Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029441.1| protein YIF1A [Bos taurus]. 468 e-132
Alignment gi|XP_002695013.1| PREDICTED: YIF1B protein-like [Bos taurus]. 266 1e-71
Alignment gi|XP_874645.4| PREDICTED: Yip1 interacting factor homolog B [B... 266 1e-71
>ref|NP_001029441.1| protein YIF1A [Bos taurus].
Length = 293
Score = 468 bits (1203), Expect = e-132
Identities = 235/255 (92%), Positives = 238/255 (93%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPP LFDDT DVAFNVNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPPLFDDTSGGYSSQPGGYPAPGADVAFNVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
N+AMAYGSSIASHGKDM++KELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NMAMAYGSSIASHGKDMMNKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV
Sbjct: 121 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA
Sbjct: 181 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 241 LMYFIVRSLRTAALG 255
>ref|XP_002695013.1| PREDICTED: YIF1B protein-like [Bos taurus].
Length = 309
Score = 266 bits (681), Expect = 1e-71
Identities = 127/200 (63%), Positives = 159/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLLVFPY
Sbjct: 68 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLVFPYL 127
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 128 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 187
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DLST L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 188 ALAWLTVEVLAILLSLYLITVNTDLSTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 247
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 248 GWCCVSIFVFMIRTLRLKIL 267
>ref|XP_874645.4| PREDICTED: Yip1 interacting factor homolog B [Bos taurus].
Length = 309
Score = 266 bits (681), Expect = 1e-71
Identities = 127/200 (63%), Positives = 159/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLLVFPY
Sbjct: 68 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLVFPYL 127
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 128 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 187
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DLST L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 188 ALAWLTVEVLAILLSLYLITVNTDLSTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 247
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 248 GWCCVSIFVFMIRTLRLKIL 267
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,563,894
Number of extensions: 1487503
Number of successful extensions: 8555
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8398
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,306,398
Effective search space: 2947117988
Effective search space used: 2947117988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852515.1| PREDICTED: similar to Yip1 interacting factor h... 471 e-133
Alignment gi|XP_533223.2| PREDICTED: similar to Yip1 interacting factor h... 452 e-127
Alignment gi|XP_865899.1| PREDICTED: similar to Yip1 interacting factor h... 338 4e-93
Alignment gi|XP_867528.1| PREDICTED: similar to Yip1 interacting factor h... 265 3e-71
Alignment gi|XP_541646.2| PREDICTED: similar to Yip1 interacting factor h... 265 3e-71
Alignment gi|XP_867511.1| PREDICTED: similar to Yip1 interacting factor h... 171 1e-42
Alignment gi|XP_865882.1| PREDICTED: similar to Yip1 interacting factor h... 145 7e-35
>ref|XP_852515.1| PREDICTED: similar to Yip1 interacting factor homolog isoform 2
[Canis familiaris].
Length = 293
Score = 471 bits (1211), Expect = e-133
Identities = 235/255 (92%), Positives = 238/255 (93%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPP LFDDT DVAFNVNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPPLFDDTSGAYSSQPGGYPAPGADVAFNVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVW+V
Sbjct: 121 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWIV 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLG+YLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS+
Sbjct: 181 MEVLALLLGVYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSS 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 241 LMYFIVRSLRTAALG 255
>ref|XP_533223.2| PREDICTED: similar to Yip1 interacting factor homolog isoform 1
[Canis familiaris].
Length = 298
Score = 452 bits (1163), Expect = e-127
Identities = 228/255 (89%), Positives = 232/255 (90%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
+ Y S Y GSKHRARAAPDPP LFDDT DVAFNVNHLLGDPMA
Sbjct: 6 VTYSSTYKPTGSKHRARAAPDPPPLFDDTSGAYSSQPGGYPAPGADVAFNVNHLLGDPMA 65
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 66 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 125
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVW+V
Sbjct: 126 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWIV 185
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLG+YLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS+
Sbjct: 186 MEVLALLLGVYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSS 245
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 246 LMYFIVRSLRTAALG 260
>ref|XP_865899.1| PREDICTED: similar to Yip1 interacting factor homolog isoform 4
[Canis familiaris].
Length = 241
Score = 338 bits (867), Expect = 4e-93
Identities = 181/255 (70%), Positives = 182/255 (71%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPP LFDDT DVAFNVNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPPLFDDTSGAYSSQPGGYPAPGADVAFNVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKR VL
Sbjct: 121 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRMILSVL------------ 168
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
TGLLFGSDGYYVALAWTSS+
Sbjct: 169 ----------------------------------------TGLLFGSDGYYVALAWTSSS 188
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 189 LMYFIVRSLRTAALG 203
>ref|XP_867528.1| PREDICTED: similar to Yip1 interacting factor homolog B isoform 2
isoform 3 [Canis familiaris].
Length = 299
Score = 265 bits (678), Expect = 3e-71
Identities = 126/200 (63%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLL FPY
Sbjct: 58 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLFFPYL 117
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 118 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 177
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYYV L
Sbjct: 178 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYVVL 237
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 238 GWCCVSIFVFMIRTLRLKIL 257
>ref|XP_541646.2| PREDICTED: similar to Yip1 interacting factor homolog B isoform a
isoform 1 [Canis familiaris].
Length = 309
Score = 265 bits (678), Expect = 3e-71
Identities = 126/200 (63%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLL FPY
Sbjct: 68 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLFFPYL 127
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 128 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 187
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYYV L
Sbjct: 188 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYVVL 247
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 248 GWCCVSIFVFMIRTLRLKIL 267
>ref|XP_867511.1| PREDICTED: similar to Yip1 interacting factor homolog B isoform a
isoform 2 [Canis familiaris].
Length = 257
Score = 171 bits (432), Expect = 1e-42
Identities = 92/200 (46%), Positives = 113/200 (56%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLL FPY
Sbjct: 68 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLFFPYL 127
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q R VL
Sbjct: 128 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRMIGGVL------ 181
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
GLLFG GYYV L
Sbjct: 182 ----------------------------------------------MGLLFGKIGYYVVL 195
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 196 GWCCVSIFVFMIRTLRLKIL 215
>ref|XP_865882.1| PREDICTED: similar to Yip1 interacting factor homolog isoform 3
[Canis familiaris].
Length = 113
Score = 145 bits (365), Expect = 7e-35
Identities = 73/75 (97%), Positives = 75/75 (100%)
Frame = +1
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLG+YLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSS+
Sbjct: 1 MEVLALLLGVYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSS 60
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 61 LMYFIVRSLRTAALG 75
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,180,703
Number of extensions: 1518164
Number of successful extensions: 8658
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8533
Number of HSP's successfully gapped: 8
Length of query: 308
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 206
Effective length of database: 15,474,232
Effective search space: 3187691792
Effective search space used: 3187691792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353810.1| PREDICTED: protein YIF1A-like [Sus scrofa]. 474 e-134
Alignment gi|XP_003122548.1| PREDICTED: protein YIF1A-like isoform 1 [Sus... 474 e-134
Alignment gi|XP_003127154.1| PREDICTED: protein YIF1B-like [Sus scrofa]. 262 2e-70
>ref|XP_003353810.1| PREDICTED: protein YIF1A-like [Sus scrofa].
Length = 293
Score = 474 bits (1221), Expect = e-134
Identities = 239/255 (93%), Positives = 239/255 (93%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPPSLFDDT DVAFNVNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPSLFDDTSGGYSSQPGGYPAPGADVAFNVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV
Sbjct: 121 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA
Sbjct: 181 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 241 LMYFIVRSLRTAALG 255
>ref|XP_003122548.1| PREDICTED: protein YIF1A-like isoform 1 [Sus scrofa].
Length = 293
Score = 474 bits (1221), Expect = e-134
Identities = 239/255 (93%), Positives = 239/255 (93%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPPSLFDDT DVAFNVNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPSLFDDTSGGYSSQPGGYPAPGADVAFNVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV
Sbjct: 121 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA
Sbjct: 181 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 241 LMYFIVRSLRTAALG 255
>ref|XP_003127154.1| PREDICTED: protein YIF1B-like [Sus scrofa].
Length = 309
Score = 262 bits (669), Expect = 2e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ V KLKY+FAVDT YV KKLGLL FPY
Sbjct: 68 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPVTKLKYYFAVDTMYVGKKLGLLFFPYL 127
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 128 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 187
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV ++L+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 188 ALAWLKLEVLAILLNLYLVTVNTELTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 247
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W ++ F++R+LR L
Sbjct: 248 GWCCVSIFVFMIRTLRLKIL 267
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,152,938
Number of extensions: 962055
Number of successful extensions: 5723
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5571
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 209
Effective length of database: 8,879,129
Effective search space: 1855737961
Effective search space used: 1855737961
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080829.1| protein YIF1A [Mus musculus]. 440 e-124
Alignment gi|NP_001103671.1| protein YIF1B isoform 2 [Mus musculus]. 266 1e-71
Alignment gi|NP_084163.2| protein YIF1B isoform 1 [Mus musculus]. 266 1e-71
>ref|NP_080829.1| protein YIF1A [Mus musculus].
Length = 293
Score = 440 bits (1131), Expect = e-124
Identities = 219/255 (85%), Positives = 231/255 (90%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHS YG HGSKHR RAAPDPP LFDDT DVAF+VN+LLGDP+A
Sbjct: 1 MAYHSAYGVHGSKHRTRAAPDPPPLFDDTSGGYSSQLGGYPAPGADVAFSVNNLLGDPVA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
N+AMAYG+SIAS GKD+VHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNW++
Sbjct: 61 NMAMAYGTSIASQGKDIVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWKM 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYS DVPLPPR+DLNAPDLYIPTMAFITYVLLAGMALGIQ+RFSPEVLGLCASTALVWV
Sbjct: 121 QYSHDVPLPPRKDLNAPDLYIPTMAFITYVLLAGMALGIQQRFSPEVLGLCASTALVWVF 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLG+YLATVRS+LSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA
Sbjct: 181 MEVLALLLGLYLATVRSELSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAA G
Sbjct: 241 LMYFIVRSLRTAASG 255
>ref|NP_001103671.1| protein YIF1B isoform 2 [Mus musculus].
Length = 308
Score = 266 bits (681), Expect = 1e-71
Identities = 125/200 (62%), Positives = 160/200 (80%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L PM+N+AM YGSS+A+ GK++V K + RF+ V+KLKY+FAVDT YV KKLGLLVFPY
Sbjct: 67 LAAPMSNMAMVYGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYL 126
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITY+L+AG+ALG Q RFSP++LGL AS+
Sbjct: 127 HQDWEVQYQQDTPVAPRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASS 186
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EV+A+LL +YL TV +DL+T L+A+ GYKYVGMI VLTGLLFG GYY+ L
Sbjct: 187 ALAWLTLEVVAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVL 246
Query: 862 AWTSSALMYFIVRSLRTAAL 921
AW ++ F++R+LR L
Sbjct: 247 AWCCVSIFVFMIRTLRLKIL 266
>ref|NP_084163.2| protein YIF1B isoform 1 [Mus musculus].
Length = 311
Score = 266 bits (681), Expect = 1e-71
Identities = 125/200 (62%), Positives = 160/200 (80%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L PM+N+AM YGSS+A+ GK++V K + RF+ V+KLKY+FAVDT YV KKLGLLVFPY
Sbjct: 70 LAAPMSNMAMVYGSSLAAQGKELVDKNIDRFIPVSKLKYYFAVDTVYVGKKLGLLVFPYL 129
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITY+L+AG+ALG Q RFSP++LGL AS+
Sbjct: 130 HQDWEVQYQQDTPVAPRFDINAPDLYIPAMAFITYILVAGLALGTQDRFSPDLLGLQASS 189
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EV+A+LL +YL TV +DL+T L+A+ GYKYVGMI VLTGLLFG GYY+ L
Sbjct: 190 ALAWLTLEVVAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVL 249
Query: 862 AWTSSALMYFIVRSLRTAAL 921
AW ++ F++R+LR L
Sbjct: 250 AWCCVSIFVFMIRTLRLKIL 269
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,405,675
Number of extensions: 1224829
Number of successful extensions: 6537
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6420
Number of HSP's successfully gapped: 3
Length of query: 308
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 207
Effective length of database: 12,583,923
Effective search space: 2604872061
Effective search space used: 2604872061
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065203.2| protein YIF1A [Homo sapiens]. 466 e-131
Alignment gi|NP_001034762.1| protein YIF1B isoform 4 [Homo sapiens]. 265 6e-71
Alignment gi|NP_001138934.1| protein YIF1B isoform 2 [Homo sapiens]. 264 1e-70
Alignment gi|NP_001138933.1| protein YIF1B isoform 6 [Homo sapiens]. 264 1e-70
Alignment gi|NP_291035.1| protein YIF1B isoform 2 [Homo sapiens]. 264 1e-70
Alignment gi|NP_001034760.1| protein YIF1B isoform 3 [Homo sapiens]. 264 1e-70
Alignment gi|NP_001034761.1| protein YIF1B isoform 5 [Homo sapiens]. 264 1e-70
Alignment gi|NP_001138935.1| protein YIF1B isoform 7 [Homo sapiens]. 257 9e-69
>ref|NP_065203.2| protein YIF1A [Homo sapiens].
Length = 293
Score = 466 bits (1200), Expect = e-131
Identities = 234/255 (91%), Positives = 237/255 (92%)
Frame = +1
Query: 160 MAYHSGYGAHGSKHRARAAPDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMA 339
MAYHSGYGAHGSKHRARAAPDPP LFDDT DVAF+VNHLLGDPMA
Sbjct: 1 MAYHSGYGAHGSKHRARAAPDPPPLFDDTSGGYSSQPGGYPATGADVAFSVNHLLGDPMA 60
Query: 340 NVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 519
NVAMAYGSSIASHGKDMVHKELHRFVSV+KLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV
Sbjct: 61 NVAMAYGSSIASHGKDMVHKELHRFVSVSKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEV 120
Query: 520 QYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 699
QYSRD PLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV
Sbjct: 121 QYSRDAPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVV 180
Query: 700 MEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 879
MEVLALLLG+YLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA
Sbjct: 181 MEVLALLLGLYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSA 240
Query: 880 LMYFIVRSLRTAALG 924
LMYFIVRSLRTAALG
Sbjct: 241 LMYFIVRSLRTAALG 255
>ref|NP_001034762.1| protein YIF1B isoform 4 [Homo sapiens].
Length = 311
Score = 265 bits (676), Expect = 6e-71
Identities = 143/295 (48%), Positives = 185/295 (62%), Gaps = 11/295 (3%)
Frame = +1
Query: 70 PCPGSGAAAPLVFLPTRRR--------SGPSERASVGAMAYHSGYGAH---GSKHRARAA 216
P + AAA LP++RR + P + + A GYGA G A+
Sbjct: 3 PAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAAS 62
Query: 217 PDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMANVAMAYGSSIASHGKDMVH 396
P P + F L DP++N+AMAYGSS+A+ GK++V
Sbjct: 63 PTPHAAF----------------------------LADPVSNMAMAYGSSLAAQGKELVD 94
Query: 397 KELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVPLPPRQDLNAPDL 576
K + RF+ + KLKY+FAVDT YV +KLGLL FPY HQ+WEVQY +D P+ PR D+NAPDL
Sbjct: 95 KNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDL 154
Query: 577 YIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDL 756
YIP MAFITYVL+AG+ALG Q RFSP++LGL AS+AL W+ +EVLA+LL +YL TV +DL
Sbjct: 155 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDL 214
Query: 757 STFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFIVRSLRTAAL 921
+T L+A+ GYKYVGMI VL GLLFG GYY+ L W A+ F++R+LR L
Sbjct: 215 TTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKIL 269
>ref|NP_001138934.1| protein YIF1B isoform 2 [Homo sapiens].
Length = 283
Score = 264 bits (674), Expect = 1e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ + KLKY+FAVDT YV +KLGLL FPY
Sbjct: 42 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYL 101
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 102 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 161
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 162 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 221
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W A+ F++R+LR L
Sbjct: 222 GWCCVAIFVFMIRTLRLKIL 241
>ref|NP_001138933.1| protein YIF1B isoform 6 [Homo sapiens].
Length = 297
Score = 264 bits (674), Expect = 1e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ + KLKY+FAVDT YV +KLGLL FPY
Sbjct: 56 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYL 115
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 116 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 175
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 176 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 235
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W A+ F++R+LR L
Sbjct: 236 GWCCVAIFVFMIRTLRLKIL 255
>ref|NP_291035.1| protein YIF1B isoform 2 [Homo sapiens].
Length = 283
Score = 264 bits (674), Expect = 1e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ + KLKY+FAVDT YV +KLGLL FPY
Sbjct: 42 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYL 101
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 102 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 161
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 162 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 221
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W A+ F++R+LR L
Sbjct: 222 GWCCVAIFVFMIRTLRLKIL 241
>ref|NP_001034760.1| protein YIF1B isoform 3 [Homo sapiens].
Length = 299
Score = 264 bits (674), Expect = 1e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ + KLKY+FAVDT YV +KLGLL FPY
Sbjct: 58 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYL 117
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 118 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 177
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 178 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 237
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W A+ F++R+LR L
Sbjct: 238 GWCCVAIFVFMIRTLRLKIL 257
>ref|NP_001034761.1| protein YIF1B isoform 5 [Homo sapiens].
Length = 314
Score = 264 bits (674), Expect = 1e-70
Identities = 124/200 (62%), Positives = 158/200 (79%)
Frame = +1
Query: 322 LGDPMANVAMAYGSSIASHGKDMVHKELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYT 501
L DP++N+AMAYGSS+A+ GK++V K + RF+ + KLKY+FAVDT YV +KLGLL FPY
Sbjct: 73 LADPVSNMAMAYGSSLAAQGKELVDKNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYL 132
Query: 502 HQNWEVQYSRDVPLPPRQDLNAPDLYIPTMAFITYVLLAGMALGIQKRFSPEVLGLCAST 681
HQ+WEVQY +D P+ PR D+NAPDLYIP MAFITYVL+AG+ALG Q RFSP++LGL AS+
Sbjct: 133 HQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASS 192
Query: 682 ALVWVVMEVLALLLGIYLATVRSDLSTFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVAL 861
AL W+ +EVLA+LL +YL TV +DL+T L+A+ GYKYVGMI VL GLLFG GYY+ L
Sbjct: 193 ALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVL 252
Query: 862 AWTSSALMYFIVRSLRTAAL 921
W A+ F++R+LR L
Sbjct: 253 GWCCVAIFVFMIRTLRLKIL 272
>ref|NP_001138935.1| protein YIF1B isoform 7 [Homo sapiens].
Length = 291
Score = 257 bits (657), Expect = 9e-69
Identities = 139/286 (48%), Positives = 179/286 (62%), Gaps = 11/286 (3%)
Frame = +1
Query: 70 PCPGSGAAAPLVFLPTRRR--------SGPSERASVGAMAYHSGYGAH---GSKHRARAA 216
P + AAA LP++RR + P + + A GYGA G A+
Sbjct: 3 PAGLAAAAAGTPRLPSKRRIPVSQPGMADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAAS 62
Query: 217 PDPPSLFDDTXXXXXXXXXXXXXXXXDVAFNVNHLLGDPMANVAMAYGSSIASHGKDMVH 396
P P + F L DP++N+AMAYGSS+A+ GK++V
Sbjct: 63 PTPHAAF----------------------------LADPVSNMAMAYGSSLAAQGKELVD 94
Query: 397 KELHRFVSVNKLKYFFAVDTAYVAKKLGLLVFPYTHQNWEVQYSRDVPLPPRQDLNAPDL 576
K + RF+ + KLKY+FAVDT YV +KLGLL FPY HQ+WEVQY +D P+ PR D+NAPDL
Sbjct: 95 KNIDRFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDL 154
Query: 577 YIPTMAFITYVLLAGMALGIQKRFSPEVLGLCASTALVWVVMEVLALLLGIYLATVRSDL 756
YIP MAFITYVL+AG+ALG Q RFSP++LGL AS+AL W+ +EVLA+LL +YL TV +DL
Sbjct: 155 YIPAMAFITYVLVAGLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDL 214
Query: 757 STFHLLAYSGYKYVGMILSVLTGLLFGSDGYYVALAWTSSALMYFI 894
+T L+A+ GYKYVGMI VL GLLFG GYY+ L W A+ F+
Sbjct: 215 TTIDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFM 260
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,277,783
Number of extensions: 1479536
Number of successful extensions: 8434
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8306
Number of HSP's successfully gapped: 8
Length of query: 308
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 206
Effective length of database: 14,934,836
Effective search space: 3076576216
Effective search space used: 3076576216
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008526
(926 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 422 e-115
>Sscrofa_Chr02
|| Length = 162569375
Score = 422 bits (213), Expect = e-115
Identities = 213/213 (100%)
Strand = Plus / Plus
Query: 190 ggctccaagcacagggcccgggcagctccggatcccccttccctcttcgatgacacaagc 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174936 ggctccaagcacagggcccgggcagctccggatcccccttccctcttcgatgacacaagc 5174995
Query: 250 ggtggttactccagccagccagggggatacccagccccaggagccgacgtggccttcaat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174996 ggtggttactccagccagccagggggatacccagccccaggagccgacgtggccttcaat 5175055
Query: 310 gtcaaccacttgcttggggacccaatggccaacgtggctatggcctatggcagctccatc 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175056 gtcaaccacttgcttggggacccaatggccaacgtggctatggcctatggcagctccatc 5175115
Query: 370 gcctcccatgggaaggacatggtgcacaaggag 402
|||||||||||||||||||||||||||||||||
Sbjct: 5175116 gcctcccatgggaaggacatggtgcacaaggag 5175148
Score = 379 bits (191), Expect = e-102
Identities = 191/191 (100%)
Strand = Plus / Plus
Query: 1 tgacgctgtggacatggctgctgcagtcggacagtacagagacgtgtcgggctgttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174052 tgacgctgtggacatggctgctgcagtcggacagtacagagacgtgtcgggctgttctgt 5174111
Query: 61 aacctcggtccgtgcccaggaagcggagcagctgccccactagtattcttaccgaccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174112 aacctcggtccgtgcccaggaagcggagcagctgccccactagtattcttaccgaccagg 5174171
Query: 121 cgacgcagcgggccctcggagagagcgagcgtcggggccatggcttatcactcgggctac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5174172 cgacgcagcgggccctcggagagagcgagcgtcggggccatggcttatcactcgggctac 5174231
Query: 181 ggagcccacgg 191
|||||||||||
Sbjct: 5174232 ggagcccacgg 5174242
Score = 307 bits (155), Expect = 6e-81
Identities = 158/159 (99%)
Strand = Plus / Plus
Query: 643 aggttctccccagaggtgctgggcctgtgtgcaagtaccgcgctggtgtgggtggtgatg 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5177229 aggttctccccagaggtgctgggcctgtgtgcaagtaccgcgctggtgtgggtggtgatg 5177288
Query: 703 gaggtgctagccttgctcctgggcatctacctggccaccgtgcgcagtgacctgagcacc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5177289 gaggtgctagccttgctcctgggcatctacctggccaccgtgcgcagtgacctgagcacc 5177348
Query: 763 ttccacctgctggcctacagcggctacaaatatgtgggg 801
|||||||||||||||||||| ||||||||||||||||||
Sbjct: 5177349 ttccacctgctggcctacagtggctacaaatatgtgggg 5177387
Score = 212 bits (107), Expect = 3e-52
Identities = 107/107 (100%)
Strand = Plus / Plus
Query: 401 agctacaccgtttcgtgtctgtgaacaaactcaagtattttttcgctgtggacacagcct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175300 agctacaccgtttcgtgtctgtgaacaaactcaagtattttttcgctgtggacacagcct 5175359
Query: 461 atgtggctaagaagctagggctgctggtcttcccttacacacaccag 507
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175360 atgtggctaagaagctagggctgctggtcttcccttacacacaccag 5175406
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 800 ggatgatcctcagtgttctcacgggcctgctttttggcagcgatggctactacgtagcgc 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5177855 ggatgatcctcagtgttctcacgggcctgctttttggcagcgatggctactacgtagcgc 5177914
Query: 860 tggcctggacttcgtctgcgctcatgtacttcatcgtg 897
||||||||||||||||||||||||||||||||||||||
Sbjct: 5177915 tggcctggacttcgtctgcgctcatgtacttcatcgtg 5177952
Score = 170 bits (86), Expect = 9e-40
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 501 acaccagaactgggaagtgcagtacagtcgcgatgtgcctctgccccctcggcaagacct 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5175550 acaccagaactgggaagtgcagtacagtcgcgatgtgcctctgccccctcggcaagacct 5175609
Query: 561 caacgcccccgacctctatattccca 586
||||||||||||||||||||||||||
Sbjct: 5175610 caacgcccccgacctctatattccca 5175635
Score = 119 bits (60), Expect = 3e-24
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 587 cgatggccttcatcacctatgtgctgctggctgggatggcgctgggcattcagaaaaggt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5177075 cgatggccttcatcacctatgtgctgctggctgggatggcgctgggcattcagaaaaggt 5177134
Score = 63.9 bits (32), Expect = 1e-07
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 895 gtgcgctctttgcgaactgcagccctgggctc 926
||||||||||||||||||||||||||||||||
Sbjct: 5178040 gtgcgctctttgcgaactgcagccctgggctc 5178071
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,643,969
Number of extensions: 195
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 8
Length of query: 926
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 905
Effective length of database: 2,808,413,156
Effective search space: 2541613906180
Effective search space used: 2541613906180
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)