Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039551.1| WD repeat-containing protein 54 [Bos taurus]. 531 e-151
>ref|NP_001039551.1| WD repeat-containing protein 54 [Bos taurus].
Length = 331
Score = 531 bits (1368), Expect = e-151
Identities = 258/288 (89%), Positives = 274/288 (95%)
Frame = +1
Query: 70 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 249
MF RERSIPLRGSAAALCNNLSVLQLP RNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFRRERSIPLRGSAAALCNNLSVLQLPARNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 250 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 429
AK+GAGVSPPLITQ+HWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALD+GDAS VQA
Sbjct: 61 AKEGAGVSPPLITQIHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDAGDASLVQA 120
Query: 430 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 609
FARGIAASGH++CVGTWSG+VLVFDIP KGPNIVLSEELA HQTP++DIATE AQGQDC
Sbjct: 121 AFARGIAASGHYVCVGTWSGQVLVFDIPTKGPNIVLSEELARHQTPISDIATEPAQGQDC 180
Query: 610 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 789
VAD VTADDSGLLCVWRSGP+FKLLT+IPGFG+PC SVQLWQG IAAGYG+GQVRLYEAS
Sbjct: 181 VADTVTADDSGLLCVWRSGPKFKLLTQIPGFGVPCSSVQLWQGTIAAGYGNGQVRLYEAS 240
Query: 790 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSKTPESG 933
TGT+HVQI+AHARAICALDLAPE LLSAAEDTFVHIWKLS++PE G
Sbjct: 241 TGTVHVQIDAHARAICALDLAPE---LLSAAEDTFVHIWKLSRSPEDG 285
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,542,899
Number of extensions: 1405421
Number of successful extensions: 6052
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6022
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,306,398
Effective search space: 2990037182
Effective search space used: 2990037182
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532999.2| PREDICTED: similar to WD repeat domain 54 [Cani... 557 e-159
>ref|XP_532999.2| PREDICTED: similar to WD repeat domain 54 [Canis familiaris].
Length = 334
Score = 557 bits (1436), Expect = e-159
Identities = 268/288 (93%), Positives = 280/288 (97%)
Frame = +1
Query: 70 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 249
MF RERSIPLRGSAAALCNNLSVL +P RNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFRRERSIPLRGSAAALCNNLSVLHVPARNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 250 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 429
AK+GAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGD SPVQA
Sbjct: 61 AKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDVSPVQA 120
Query: 430 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 609
VFARGIA+SGHFICVGTWSGR+LVFDIPAKGPNIVLSEELAGHQT VTDIATE AQGQDC
Sbjct: 121 VFARGIASSGHFICVGTWSGRILVFDIPAKGPNIVLSEELAGHQTSVTDIATEPAQGQDC 180
Query: 610 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 789
VADMVTADDSGLLCVW+SGPEFKL+TRIPGFG+PCPSVQLW G +AAGYGDGQVRLYEAS
Sbjct: 181 VADMVTADDSGLLCVWQSGPEFKLMTRIPGFGVPCPSVQLWHGIVAAGYGDGQVRLYEAS 240
Query: 790 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSKTPESG 933
TGTLHVQI+AHARAICALDLAPEVGKLLSAAEDTF+HIWKLS++PESG
Sbjct: 241 TGTLHVQISAHARAICALDLAPEVGKLLSAAEDTFIHIWKLSRSPESG 288
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,136,771
Number of extensions: 1428380
Number of successful extensions: 6148
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6131
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 208
Effective length of database: 15,440,896
Effective search space: 3211706368
Effective search space used: 3211706368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003125040.1| PREDICTED: WD repeat-containing protein 54 [... 583 e-167
Alignment gi|XP_003125048.2| PREDICTED: WD repeat-containing protein 54-l... 540 e-154
>ref|XP_003125040.1| PREDICTED: WD repeat-containing protein 54 [Sus scrofa].
Length = 334
Score = 583 bits (1504), Expect = e-167
Identities = 286/288 (99%), Positives = 288/288 (100%)
Frame = +1
Query: 70 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 249
MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 250 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 429
AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA
Sbjct: 61 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 120
Query: 430 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 609
VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC
Sbjct: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 180
Query: 610 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 789
VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS
Sbjct: 181 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 240
Query: 790 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSKTPESG 933
TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLS++PESG
Sbjct: 241 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSRSPESG 288
>ref|XP_003125048.2| PREDICTED: WD repeat-containing protein 54-like [Sus scrofa].
Length = 356
Score = 540 bits (1391), Expect = e-154
Identities = 264/266 (99%), Positives = 266/266 (100%)
Frame = +1
Query: 136 VLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHAKQGAGVSPPLITQVHWCVLPF 315
VLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHAKQGAGVSPPLITQVHWCVLPF
Sbjct: 45 VLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLHAKQGAGVSPPLITQVHWCVLPF 104
Query: 316 RVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQAVFARGIAASGHFICVGTWSGRV 495
RVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQAVFARGIAASGHFICVGTWSGRV
Sbjct: 105 RVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQAVFARGIAASGHFICVGTWSGRV 164
Query: 496 LVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDCVADMVTADDSGLLCVWRSGPEF 675
LVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDCVADMVTADDSGLLCVWRSGPEF
Sbjct: 165 LVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDCVADMVTADDSGLLCVWRSGPEF 224
Query: 676 KLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEASTGTLHVQINAHARAICALDLAP 855
KLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEASTGTLHVQINAHARAICALDLAP
Sbjct: 225 KLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEASTGTLHVQINAHARAICALDLAP 284
Query: 856 EVGKLLSAAEDTFVHIWKLSKTPESG 933
EVGKLLSAAEDTFVHIWKLS++PESG
Sbjct: 285 EVGKLLSAAEDTFVHIWKLSRSPESG 310
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,108,426
Number of extensions: 904479
Number of successful extensions: 3889
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3873
Number of HSP's successfully gapped: 2
Length of query: 311
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 212
Effective length of database: 8,879,129
Effective search space: 1882375348
Effective search space used: 1882375348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_076279.1| WD repeat-containing protein 54 [Mus musculus]. 528 e-150
>ref|NP_076279.1| WD repeat-containing protein 54 [Mus musculus].
Length = 334
Score = 528 bits (1361), Expect = e-150
Identities = 260/288 (90%), Positives = 272/288 (94%)
Frame = +1
Query: 70 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 249
MF RERSIPLR SAAAL NNLSVLQLP R+LTHFGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFRRERSIPLRSSAAALSNNLSVLQLPARDLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 250 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 429
K+GAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDAS VQA
Sbjct: 61 VKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASSVQA 120
Query: 430 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 609
+FARGIAAS HFICVGT SGRVLVFDIPAKGPNIVLSEELAGHQTP+TDIATE AQGQD
Sbjct: 121 MFARGIAASVHFICVGTCSGRVLVFDIPAKGPNIVLSEELAGHQTPITDIATERAQGQDG 180
Query: 610 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 789
VADMVTADDSG+LCVWRSGPEF LLTRIPGFG+PCPSVQLWQG +AAGYG+GQVRLY+AS
Sbjct: 181 VADMVTADDSGVLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIVAAGYGNGQVRLYDAS 240
Query: 790 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSKTPESG 933
TG LHVQI+AHAR I ALDLAPEVGKLLSAAEDTFVHIWKL++ PESG
Sbjct: 241 TGALHVQISAHARTISALDLAPEVGKLLSAAEDTFVHIWKLNRNPESG 288
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,616,053
Number of extensions: 1179430
Number of successful extensions: 4815
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4800
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 210
Effective length of database: 12,583,923
Effective search space: 2642623830
Effective search space used: 2642623830
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115494.1| WD repeat-containing protein 54 [Homo sapiens]. 545 e-155
>ref|NP_115494.1| WD repeat-containing protein 54 [Homo sapiens].
Length = 334
Score = 545 bits (1405), Expect = e-155
Identities = 266/288 (92%), Positives = 274/288 (95%)
Frame = +1
Query: 70 MFHRERSIPLRGSAAALCNNLSVLQLPVRNLTHFGVVHGPSAQLLSAAPEGVPLAQRQLH 249
MF ERSIPLRGSAAALCNNLSVLQLP RNLT+FGVVHGPSAQLLSAAPEGVPLAQRQLH
Sbjct: 1 MFRWERSIPLRGSAAALCNNLSVLQLPARNLTYFGVVHGPSAQLLSAAPEGVPLAQRQLH 60
Query: 250 AKQGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESDGSVMVYWHALDSGDASPVQA 429
AK+GAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYES+G MVYWHALDSGDASPVQA
Sbjct: 61 AKEGAGVSPPLITQVHWCVLPFRVLLVLTSHRGIQMYESNGYTMVYWHALDSGDASPVQA 120
Query: 430 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQTPVTDIATEAAQGQDC 609
VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQ P+TDIATE AQGQDC
Sbjct: 121 VFARGIAASGHFICVGTWSGRVLVFDIPAKGPNIVLSEELAGHQMPITDIATEPAQGQDC 180
Query: 610 VADMVTADDSGLLCVWRSGPEFKLLTRIPGFGIPCPSVQLWQGAIAAGYGDGQVRLYEAS 789
VADMVTADDSGLLCVWRSGPEF LLTRIPGFG+PCPSVQLWQG IAAGYG+GQV LYEA+
Sbjct: 181 VADMVTADDSGLLCVWRSGPEFTLLTRIPGFGVPCPSVQLWQGIIAAGYGNGQVHLYEAT 240
Query: 790 TGTLHVQINAHARAICALDLAPEVGKLLSAAEDTFVHIWKLSKTPESG 933
TG LHVQINAHARAICALDLA EVGKLLSA EDTFVHIWKLS+ PESG
Sbjct: 241 TGNLHVQINAHARAICALDLASEVGKLLSAGEDTFVHIWKLSRNPESG 288
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,451,857
Number of extensions: 1413349
Number of successful extensions: 5825
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5796
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 209
Effective length of database: 14,934,836
Effective search space: 3121380724
Effective search space used: 3121380724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008528
(935 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 450 e-124
gb|JH118982.1| Sus scrofa unplaced genomic scaffold ChrUScaf3915 325 2e-86
>Sscrofa_Chr03
|| Length = 144787322
Score = 450 bits (227), Expect = e-124
Identities = 227/227 (100%)
Strand = Plus / Plus
Query: 67 aggatgttccaccgggagcgctctatcccccttcgaggctcggcggccgctctgtgcaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71805180 aggatgttccaccgggagcgctctatcccccttcgaggctcggcggccgctctgtgcaac 71805239
Query: 127 aacctcagtgtgctgcagctgcctgtccgcaacctcacacattttggagtagtccatgga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71805240 aacctcagtgtgctgcagctgcctgtccgcaacctcacacattttggagtagtccatgga 71805299
Query: 187 cccagcgcccagcttctcagcgctgctcctgagggtgtgcccttggcccagcgccaactc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71805300 cccagcgcccagcttctcagcgctgctcctgagggtgtgcccttggcccagcgccaactc 71805359
Query: 247 cacgcgaagcagggcgctggagtgagccccccactcatcacccaggt 293
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71805360 cacgcgaagcagggcgctggagtgagccccccactcatcacccaggt 71805406
Score = 325 bits (164), Expect = 2e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 704 ggatcccatgcccgtctgtgcagctgtggcagggagccatagcagcaggctacggggatg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71808383 ggatcccatgcccgtctgtgcagctgtggcagggagccatagcagcaggctacggggatg 71808442
Query: 764 ggcaggtgcgtctgtatgaagccagtacaggaactctgcacgtccagatcaacgctcatg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71808443 ggcaggtgcgtctgtatgaagccagtacaggaactctgcacgtccagatcaacgctcatg 71808502
Query: 824 cccgggccatctgtgccctggacctggctcctgaggtgggcaag 867
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71808503 cccgggccatctgtgccctggacctggctcctgaggtgggcaag 71808546
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 475 ggaacgtggtcaggccgggtactagtgtttgacatcccagccaagggtcccaacattgta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71807164 ggaacgtggtcaggccgggtactagtgtttgacatcccagccaagggtcccaacattgta 71807223
Query: 535 ctgagtgaagagctggctgggcaccagacaccagtcacagacattgccacggaggctgcc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71807224 ctgagtgaagagctggctgggcaccagacaccagtcacagacattgccacggaggctgcc 71807283
Query: 595 cagggacagg 604
||||||||||
Sbjct: 71807284 cagggacagg 71807293
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 600 acaggactgcgtggctgacatggtgacagcagatgactcaggcttgctgtgtgtctggcg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71808180 acaggactgcgtggctgacatggtgacagcagatgactcaggcttgctgtgtgtctggcg 71808239
Query: 660 gtcagggcccgaattcaaattactgacgcgaattccaggctttggg 705
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71808240 gtcagggcccgaattcaaattactgacgcgaattccaggctttggg 71808285
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 352 cagatgtacgagtctgacggctctgtcatggtctattggcatgcactggactctggagat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71806316 cagatgtacgagtctgacggctctgtcatggtctattggcatgcactggactctggagat 71806375
Query: 412 gcctctccag 421
||||||||||
Sbjct: 71806376 gcctctccag 71806385
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 acgtgcgtcgtctctatggtggcggcggattcggaggagactggggtaccgaacgcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71804709 acgtgcgtcgtctctatggtggcggcggattcggaggagactggggtaccgaacgcttct 71804768
Query: 61 ggagtcagg 69
|||||||||
Sbjct: 71804769 ggagtcagg 71804777
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 288 ccaggtccactggtgtgtcctccctttccgagtgttgctggtactcacctcacatcgagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71805553 ccaggtccactggtgtgtcctccctttccgagtgttgctggtactcacctcacatcgagg 71805612
Query: 348 aatacag 354
|||||||
Sbjct: 71805613 aatacag 71805619
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 419 cagtgcaggctgtgtttgcccgaggaattgccgccagtggccacttcatctgtgtggg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71806773 cagtgcaggctgtgtttgcccgaggaattgccgccagtggccacttcatctgtgtggg 71806830
Score = 115 bits (58), Expect = 4e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 866 agctgctctctgcagccgaggacacctttgtacacatctggaagctgagcaaaaccccgg 925
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 71808731 agctgctctctgcagccgaggacacctttgtacacatctggaagctgagcagaagcccgg 71808790
Query: 926 aaagtggcta 935
| ||||||||
Sbjct: 71808791 agagtggcta 71808800
>gb|JH118982.1| Sus scrofa unplaced genomic scaffold ChrUScaf3915
Length = 131457
Score = 325 bits (164), Expect = 2e-86
Identities = 164/164 (100%)
Strand = Plus / Plus
Query: 704 ggatcccatgcccgtctgtgcagctgtggcagggagccatagcagcaggctacggggatg 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18235 ggatcccatgcccgtctgtgcagctgtggcagggagccatagcagcaggctacggggatg 18294
Query: 764 ggcaggtgcgtctgtatgaagccagtacaggaactctgcacgtccagatcaacgctcatg 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18295 ggcaggtgcgtctgtatgaagccagtacaggaactctgcacgtccagatcaacgctcatg 18354
Query: 824 cccgggccatctgtgccctggacctggctcctgaggtgggcaag 867
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18355 cccgggccatctgtgccctggacctggctcctgaggtgggcaag 18398
Score = 323 bits (163), Expect = 1e-85
Identities = 163/163 (100%)
Strand = Plus / Plus
Query: 131 tcagtgtgctgcagctgcctgtccgcaacctcacacattttggagtagtccatggaccca 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15015 tcagtgtgctgcagctgcctgtccgcaacctcacacattttggagtagtccatggaccca 15074
Query: 191 gcgcccagcttctcagcgctgctcctgagggtgtgcccttggcccagcgccaactccacg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15075 gcgcccagcttctcagcgctgctcctgagggtgtgcccttggcccagcgccaactccacg 15134
Query: 251 cgaagcagggcgctggagtgagccccccactcatcacccaggt 293
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15135 cgaagcagggcgctggagtgagccccccactcatcacccaggt 15177
Score = 258 bits (130), Expect = 5e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 475 ggaacgtggtcaggccgggtactagtgtttgacatcccagccaagggtcccaacattgta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17016 ggaacgtggtcaggccgggtactagtgtttgacatcccagccaagggtcccaacattgta 17075
Query: 535 ctgagtgaagagctggctgggcaccagacaccagtcacagacattgccacggaggctgcc 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17076 ctgagtgaagagctggctgggcaccagacaccagtcacagacattgccacggaggctgcc 17135
Query: 595 cagggacagg 604
||||||||||
Sbjct: 17136 cagggacagg 17145
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 600 acaggactgcgtggctgacatggtgacagcagatgactcaggcttgctgtgtgtctggcg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18032 acaggactgcgtggctgacatggtgacagcagatgactcaggcttgctgtgtgtctggcg 18091
Query: 660 gtcagggcccgaattcaaattactgacgcgaattccaggctttggg 705
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18092 gtcagggcccgaattcaaattactgacgcgaattccaggctttggg 18137
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 352 cagatgtacgagtctgacggctctgtcatggtctattggcatgcactggactctggagat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16087 cagatgtacgagtctgacggctctgtcatggtctattggcatgcactggactctggagat 16146
Query: 412 gcctctccag 421
||||||||||
Sbjct: 16147 gcctctccag 16156
Score = 133 bits (67), Expect = 2e-28
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 288 ccaggtccactggtgtgtcctccctttccgagtgttgctggtactcacctcacatcgagg 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15324 ccaggtccactggtgtgtcctccctttccgagtgttgctggtactcacctcacatcgagg 15383
Query: 348 aatacag 354
|||||||
Sbjct: 15384 aatacag 15390
Score = 115 bits (58), Expect = 4e-23
Identities = 58/58 (100%)
Strand = Plus / Plus
Query: 419 cagtgcaggctgtgtttgcccgaggaattgccgccagtggccacttcatctgtgtggg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16547 cagtgcaggctgtgtttgcccgaggaattgccgccagtggccacttcatctgtgtggg 16604
Score = 115 bits (58), Expect = 4e-23
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 866 agctgctctctgcagccgaggacacctttgtacacatctggaagctgagcaaaaccccgg 925
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 18661 agctgctctctgcagccgaggacacctttgtacacatctggaagctgagcagaagcccgg 18720
Query: 926 aaagtggcta 935
| ||||||||
Sbjct: 18721 agagtggcta 18730
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,454,719
Number of extensions: 125
Number of successful extensions: 125
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 17
Length of query: 935
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 914
Effective length of database: 2,808,413,156
Effective search space: 2566889624584
Effective search space used: 2566889624584
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)