Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069810.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 436 e-122
Alignment gi|XP_002685725.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 204 8e-53
Alignment gi|XP_582813.5| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetyl... 204 8e-53
Alignment gi|XP_001252556.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 178 8e-45
Alignment gi|NP_001096777.1| N-acetyllactosaminide beta-1,3-N-acetylgluco... 174 1e-43
Alignment gi|NP_001095967.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 167 2e-41
Alignment gi|XP_002694533.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 158 9e-39
Alignment gi|XP_873371.2| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetyl... 158 9e-39
Alignment gi|NP_001091943.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 139 3e-33
Alignment gi|NP_001069508.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 129 5e-30
>ref|NP_001069810.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [Bos
taurus].
Length = 401
Score = 436 bits (1120), Expect = e-122
Identities = 226/298 (75%), Positives = 238/298 (79%)
Frame = +1
Query: 181 LRLRGEASITXXXXXXXXXXXYAQRDGAAQTTSAPRAEGVAAPGPTPGVRVFEAPDTGAA 360
LRLR EA +T YAQ++GAA TTSAPRA+G AAPGPTPG+RVF+APDTGAA
Sbjct: 5 LRLRREALLTLLLGATLGLLLYAQQEGAAPTTSAPRAQGRAAPGPTPGLRVFQAPDTGAA 64
Query: 361 PPVYXXXXXXXXXXXXXXXXXXGRYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAV 540
PP Y GRYLRAKDQRRFPLLINQPHKC+GNG GPDLLIAV
Sbjct: 65 PPAYEGDTPEPPTPTGPFDF--GRYLRAKDQRRFPLLINQPHKCQGNGAFPRGPDLLIAV 122
Query: 541 KSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWS 720
KSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPR T+THWS
Sbjct: 123 KSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGTGTVAGEAEAG----TQTHWS 178
Query: 721 AMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNL 900
A+LRAESRAYADILLWAFDDTFFNLTLKEIHFLAWAS YCPDVRFVFKGD+DVFVHVGNL
Sbjct: 179 ALLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASDYCPDVRFVFKGDADVFVHVGNL 238
Query: 901 LEFLAPREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
LEFLAPR+PAQDLLAGDVIVQARPIR R +YYIPEAVYGL AYPAYA GGGFVLSGA
Sbjct: 239 LEFLAPRDPAQDLLAGDVIVQARPIRVRASKYYIPEAVYGLPAYPAYAGGGGFVLSGA 296
>ref|XP_002685725.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 [Bos taurus].
Length = 401
Score = 204 bits (520), Expect = 8e-53
Identities = 108/218 (49%), Positives = 137/218 (62%), Gaps = 4/218 (1%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAE--- 600
++L + R FP+L+N P KC G+ LL+ VKS+ A +RR+A+RQTWG E
Sbjct: 110 QFLLYRHCRYFPMLLNHPEKCSGDVY------LLVVVKSIIAQHDRREAIRQTWGREQES 163
Query: 601 -GRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFD 777
GR +GA VR +FLLG ++H+ +L E R Y DIL W F
Sbjct: 164 AGRGRGA-VRTLFLLG-------------KASKPEEQSHYQQLLAYEDRIYGDILQWDFL 209
Query: 778 DTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVI 957
D+FFNLTLKEIHFL W YCPDVRFVFKGD DVFV+ NLLEFLA R P +DL GD++
Sbjct: 210 DSFFNLTLKEIHFLKWLDIYCPDVRFVFKGDDDVFVNPTNLLEFLADRRPQEDLFVGDIL 269
Query: 958 VQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
ARPIRR+ +YYIP +Y +YP YA GGGF+++G
Sbjct: 270 HHARPIRRKDSKYYIPGILYNQNSYPPYAGGGGFLMAG 307
>ref|XP_582813.5| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 [Bos taurus].
Length = 401
Score = 204 bits (520), Expect = 8e-53
Identities = 108/218 (49%), Positives = 137/218 (62%), Gaps = 4/218 (1%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAE--- 600
++L + R FP+L+N P KC G+ LL+ VKS+ A +RR+A+RQTWG E
Sbjct: 110 QFLLYRHCRYFPMLLNHPEKCSGDVY------LLVVVKSIIAQHDRREAIRQTWGREQES 163
Query: 601 -GRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFD 777
GR +GA VR +FLLG ++H+ +L E R Y DIL W F
Sbjct: 164 AGRGRGA-VRTLFLLG-------------KASKPEEQSHYQQLLAYEDRIYGDILQWDFL 209
Query: 778 DTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVI 957
D+FFNLTLKEIHFL W YCPDVRFVFKGD DVFV+ NLLEFLA R P +DL GD++
Sbjct: 210 DSFFNLTLKEIHFLKWLDIYCPDVRFVFKGDDDVFVNPTNLLEFLADRRPQEDLFVGDIL 269
Query: 958 VQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
ARPIRR+ +YYIP +Y +YP YA GGGF+++G
Sbjct: 270 HHARPIRRKDSKYYIPGILYNQNSYPPYAGGGGFLMAG 307
>ref|XP_001252556.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 6 (core 3
synthase)-like [Bos taurus].
Length = 379
Score = 178 bits (451), Expect = 8e-45
Identities = 98/218 (44%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
+LR + R FPLL + P KCRG+ GP LL+AVKS A+FERR+ +R+TWG E
Sbjct: 87 FLRYRHCRHFPLLWDAPAKCRGSR----GPFLLLAVKSAPANFERRELIRRTWGQERSYG 142
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRA-ESRAYADILLWAFDDTFF 789
G VRR+FLLG P R A L A E+R + D+L WAF DTF
Sbjct: 143 GRPVRRLFLLGTPAPEDAE------------RAEQLAELAALEAREHGDVLQWAFTDTFL 190
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLK++H L W A CP RF+ GD DVFVH N+L FL + P + L AG ++ +
Sbjct: 191 NLTLKQVHLLDWLEARCPHARFLLSGDDDVFVHTANVLRFLEAKSPDRHLFAGQLMSGSV 250
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGARYT 1083
PIR +Y++P ++ YP Y GGGF+LS RYT
Sbjct: 251 PIRESWSKYFVPPQLFPGSVYPVYCSGGGFLLS--RYT 286
>ref|NP_001096777.1| N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase [Bos
taurus].
Length = 379
Score = 174 bits (441), Expect = 1e-43
Identities = 94/213 (44%), Positives = 121/213 (56%), Gaps = 1/213 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
+LR + R FPLL + P KCRG+ GP LL+AVKS A+FERR+ +R+TWG E
Sbjct: 87 FLRYRHCRHFPLLWDAPAKCRGSR----GPFLLLAVKSAPANFERRELIRRTWGQERSYG 142
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRA-ESRAYADILLWAFDDTFF 789
G VRRVFLLG P R A L A E+ + D+L WAF DTF
Sbjct: 143 GRPVRRVFLLGTPAPEDAE------------RAEQLAELAALEAHEHGDVLQWAFTDTFL 190
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLK++H L W A CP RF+ GD DVFVH N+L FL + P + L G ++ +
Sbjct: 191 NLTLKQVHLLDWLEARCPHARFLLSGDDDVFVHTANVLRFLEAKSPDRHLFTGQLMSGSV 250
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
PIR +Y++P ++ YP Y GGGF+LS
Sbjct: 251 PIRESWSKYFVPPQLFPGSVYPVYCSGGGFLLS 283
>ref|NP_001095967.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [Bos
taurus].
Length = 397
Score = 167 bits (422), Expect = 2e-41
Identities = 100/215 (46%), Positives = 123/215 (57%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ + F+RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLTSHFDRRQAIRESWGKETHVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DILLW + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPAEDNHPDLSDMLKFESEKHQDILLWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CP+ FVFKGD DVFV+ +LL +L A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHLLNYLNSLSGNKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVY-TGVYPPYAGGGGFLYSG 313
>ref|XP_002694533.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 4 [Bos taurus].
Length = 357
Score = 158 bits (399), Expect = 9e-39
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 1/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR-V 609
+L + R F +L+ +P C A+ LL+A+KS ERR A+R TWG G
Sbjct: 71 FLTYRHCRNFSILL-EPSGC------AEDTFLLLAIKSQPGHVERRAAIRSTWGRAGSWA 123
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G ++ VFLLG+ + +L ESR + DIL W F + FF
Sbjct: 124 KGRQLKLVFLLGLAGPAPP-----------------AQLLAYESREFDDILQWDFAEDFF 166
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLKE+H W +A CP F+ KGD DVFVH+ N+LEFL +PAQDLL GDVI QA
Sbjct: 167 NLTLKELHLQRWVAAACPQANFILKGDDDVFVHIPNVLEFLDGWDPAQDLLVGDVIRQAL 226
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
P R +Y+IP ++Y + YP YA GGG+V+S A
Sbjct: 227 PNRNTKVKYFIPPSMYRARHYPPYAGGGGYVMSRA 261
>ref|XP_873371.2| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 4 [Bos taurus].
Length = 357
Score = 158 bits (399), Expect = 9e-39
Identities = 91/215 (42%), Positives = 121/215 (56%), Gaps = 1/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR-V 609
+L + R F +L+ +P C A+ LL+A+KS ERR A+R TWG G
Sbjct: 71 FLTYRHCRNFSILL-EPSGC------AEDTFLLLAIKSQPGHVERRAAIRSTWGRAGSWA 123
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G ++ VFLLG+ + +L ESR + DIL W F + FF
Sbjct: 124 KGRQLKLVFLLGLAGPAPP-----------------AQLLAYESREFDDILQWDFAEDFF 166
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLKE+H W +A CP F+ KGD DVFVH+ N+LEFL +PAQDLL GDVI QA
Sbjct: 167 NLTLKELHLQRWVAAACPQANFILKGDDDVFVHIPNVLEFLDGWDPAQDLLVGDVIRQAL 226
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
P R +Y+IP ++Y + YP YA GGG+V+S A
Sbjct: 227 PNRNTKVKYFIPPSMYRARHYPPYAGGGGYVMSRA 261
>ref|NP_001091943.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Bos
taurus].
Length = 372
Score = 139 bits (351), Expect = 3e-33
Identities = 79/213 (37%), Positives = 110/213 (51%), Gaps = 1/213 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLIN-QPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRV 609
+L K R F LL P KC AD LL+ +KS +++ERR+ VR+TWG E ++
Sbjct: 83 FLLYKHCRDFALLQEVPPDKC------ADPVFLLLVIKSSPSNYERRELVRRTWGRERQI 136
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
G +RR+FL+G + +L E+R + DIL W F DTFF
Sbjct: 137 LGVQLRRLFLVGTDSNPLEARKV-------------NRLLAMEARTHEDILQWDFYDTFF 183
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLK++ FL W C + F+ GD DVF H N++ +L P L G +I
Sbjct: 184 NLTLKQVLFLQWQKTRCTNASFLLNGDDDVFAHTDNMVAYLQSHNPDHHLFVGHLIHDVG 243
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
PIR +YY+P+ + + YP Y GGGF+LS
Sbjct: 244 PIRIPWSKYYVPKVIMEEEHYPPYCGGGGFLLS 276
>ref|NP_001069508.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 [Bos
taurus].
Length = 413
Score = 129 bits (324), Expect = 5e-30
Identities = 95/260 (36%), Positives = 123/260 (47%), Gaps = 6/260 (2%)
Frame = +1
Query: 310 GPTPGVRVFEAPDTGAAPPVYXXXXXXXXXXXXXXXXXXGRYLRAKDQRRFP--LLINQP 483
G PGV EA D GA + R+L R FP L
Sbjct: 81 GTLPGVNSTEAGDCGA----WGAAAAAEIPDFASYPEDLRRFLLWAACRSFPPWLPTGGG 136
Query: 484 HKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWG--AEGRVQGALVRRVFLLGVPRX 657
+ G P D P LL+AVKS F RQAVR+TWG A G VR +FLLG P
Sbjct: 137 GQVTGCEDPGDVPFLLLAVKSEPGRFAERQAVRETWGRPAPG------VRLLFLLGSP-- 188
Query: 658 XXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAY 837
S ++ ESR Y D+LLW F D FN TLK++ LAW +
Sbjct: 189 ------------VGQAGPDLSTLVSWESRRYGDLLLWDFLDVPFNQTLKDLMLLAWLGRH 236
Query: 838 CPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDVIVQARPIRRRGQQYYIPEA 1011
CP V FV + D FV LL+ L P A+ L G+V +QA+P+R+ G +Y+P +
Sbjct: 237 CPGVSFVLQAQDDAFVRTPALLDHLRGLPPVRARGLYLGEVFIQAKPLRKPGGPFYVPGS 296
Query: 1012 VYGLQAYPAYAXGGGFVLSG 1071
+ +YPAYA GGG+V++G
Sbjct: 297 FFE-GSYPAYASGGGYVIAG 315
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,758,392
Number of extensions: 1002295
Number of successful extensions: 6652
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 6522
Number of HSP's successfully gapped: 30
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546887.2| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 424 e-129
Alignment gi|XP_543284.2| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 196 4e-50
Alignment gi|XP_531841.1| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 166 4e-41
Alignment gi|XP_542294.2| PREDICTED: similar to beta-1,3-N-acetylglucosam... 160 2e-39
Alignment gi|XP_543380.2| PREDICTED: similar to beta-1,3-N-acetylglucosam... 155 6e-38
Alignment gi|XP_541947.1| PREDICTED: similar to UDP-GlcNAc:betaGal beta-1... 140 2e-33
Alignment gi|XP_541601.2| PREDICTED: similar to UDP-Gal:betaGal beta 1,3-... 117 2e-26
Alignment gi|XP_849233.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta 1... 111 1e-24
Alignment gi|XP_545508.2| PREDICTED: similar to Beta-1,3-galactosyltransf... 105 8e-23
Alignment gi|XP_544891.2| PREDICTED: similar to Beta-1,3-galactosyltransf... 92 1e-18
>ref|XP_546887.2| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 (predicted)
[Canis familiaris].
Length = 504
Score = 424 bits (1090), Expect(2) = e-129
Identities = 221/299 (73%), Positives = 232/299 (77%), Gaps = 2/299 (0%)
Frame = +1
Query: 181 LRLRGEASITXXXXXXXXXXXYAQRDGAAQTTSAPRAEGVAAPGPTPGVRVFEAPDTGAA 360
LRL G+AS+T YAQR+GAA TT APR +G A PGPTPG+RVF APD GAA
Sbjct: 105 LRLSGDASLTLLLGTALGLLLYAQREGAAPTTGAPRPQGEAEPGPTPGLRVFPAPDAGAA 164
Query: 361 --PPVYXXXXXXXXXXXXXXXXXXGRYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLI 534
PP Y GRYLRAKDQRRFPLLINQPHKCRG+G PA GPDLLI
Sbjct: 165 AAPPAYEGDTPEPPTPTGPFDF--GRYLRAKDQRRFPLLINQPHKCRGDGSPAGGPDLLI 222
Query: 535 AVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTH 714
AVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPR R+H
Sbjct: 223 AVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGAGTDGADAEGEGP---RSH 279
Query: 715 WSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVG 894
W A+LRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCP VRFVFKGD+DVFVHVG
Sbjct: 280 WPALLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPQVRFVFKGDADVFVHVG 339
Query: 895 NLLEFLAPREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
NLL FLAPR+PAQDLLAGDVIVQARPIR R +YYIPEAVYGL AYPAYA GGGFVLSG
Sbjct: 340 NLLAFLAPRDPAQDLLAGDVIVQARPIRTRASKYYIPEAVYGLPAYPAYAGGGGFVLSG 398
Score = 57.0 bits (136), Expect(2) = e-129
Identities = 30/38 (78%), Positives = 32/38 (84%)
Frame = +3
Query: 3 FLPTLHLAQAPSMAALGTLR*APEAPASGAKLLPRAER 116
FLPTLHLAQAPS+AALGT R APEA ASGA LPR +R
Sbjct: 55 FLPTLHLAQAPSLAALGTPRRAPEALASGAAPLPRDKR 92
>ref|XP_543284.2| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 7 [Canis
familiaris].
Length = 530
Score = 196 bits (497), Expect = 4e-50
Identities = 102/217 (47%), Positives = 133/217 (61%), Gaps = 3/217 (1%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR- 606
++L + R FP+L+N P KC G+ LL+ VKS+ +RR+A+RQTWG E
Sbjct: 239 QFLTYRHCRYFPMLLNHPEKCGGH------VHLLVVVKSIITQHDRREAIRQTWGREQES 292
Query: 607 VQGA--LVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDD 780
V G +R +FLLG RTH+ +L E R Y DIL W F D
Sbjct: 293 VSGGRGAIRTLFLLGTASKQEE-------------RTHYQQLLAYEDRLYGDILQWDFLD 339
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIV 960
+FFNLTLKEIHFL W YCP+V+F+FKGD DVFV+ NLLEFLA +P +DL GDV+
Sbjct: 340 SFFNLTLKEIHFLKWFDIYCPNVQFIFKGDDDVFVNPTNLLEFLADWQPREDLFVGDVLQ 399
Query: 961 QARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
ARPIR++ +YYIP +Y +YP YA GGGF+++G
Sbjct: 400 HARPIRKKDNKYYIPGVLYSKASYPPYAGGGGFLMAG 436
>ref|XP_531841.1| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 1 [Canis
familiaris].
Length = 397
Score = 166 bits (420), Expect = 4e-41
Identities = 99/215 (46%), Positives = 123/215 (57%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ F RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLIPHFARRQAIRESWGRETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W SA CP+ FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSASCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVY-TGVYPPYAGGGGFLYSG 313
>ref|XP_542294.2| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase
protein [Canis familiaris].
Length = 460
Score = 160 bits (406), Expect = 2e-39
Identities = 87/212 (41%), Positives = 119/212 (56%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
+LR + R FPLL + P KC G G LL+AVKS A++ERR+ +R+TWG E
Sbjct: 100 FLRYRHCRHFPLLWDAPAKCAG----PRGAFLLLAVKSSPANYERRELIRRTWGQERSYG 155
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
G VRR+FLLG +A++ E+R + D+L WAF DTF N
Sbjct: 156 GQQVRRLFLLGTAAPGDADAERAERL---------AALVGLEAREHRDVLQWAFADTFLN 206
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARP 972
LTLK +H L W + CP RF+ D DVFVH N+L FL + P + L AG ++ + P
Sbjct: 207 LTLKHVHLLDWLAERCPHARFLLSCDDDVFVHTANVLRFLRAQRPDRHLFAGQLMDGSVP 266
Query: 973 IRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
IR +Y++P ++ +AYP Y GGGF+LS
Sbjct: 267 IRDSRSKYFVPPQLFPGRAYPVYCSGGGFLLS 298
>ref|XP_543380.2| PREDICTED: similar to beta-1,3-N-acetylglucosaminyltransferase bGnT-4
[Canis familiaris].
Length = 536
Score = 155 bits (392), Expect = 6e-38
Identities = 92/215 (42%), Positives = 120/215 (55%), Gaps = 1/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR-V 609
+L + R F +L+ +P C A+ LL+A+KS ERR A+R TWG G
Sbjct: 250 FLTYRHCRNFSILL-EPSGC------AEDTFLLLAIKSQPGHVERRAAIRSTWGRVGGWA 302
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G ++ VFLLGV + +L ESR + DIL W F + FF
Sbjct: 303 RGRRLKLVFLLGVAGPAPP-----------------AQLLAYESREFDDILQWDFAEDFF 345
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLKE+H W + C RF+ KGD DVFVHV N+LEFL +PAQDLL GDVI QA
Sbjct: 346 NLTLKELHLQRWVAVACSQTRFMLKGDDDVFVHVPNVLEFLDGWDPAQDLLVGDVIRQAL 405
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
P R +Y+IP ++Y + YP YA GGG+V+S A
Sbjct: 406 PNRNTKVKYFIPPSMYRARHYPPYAGGGGYVMSRA 440
>ref|XP_541947.1| PREDICTED: similar to UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 3 (Beta3Gn-T3)
(BGnT-3) (Core 1 extending
beta-1,3-N-acetylglucosaminyltransferase)
(Core1-beta3GlcNAcT) (Beta-1,3-galactosyltransferase 8)
(Beta-1,3-GalTase 8) (Beta3Gal-T8) (b... [Canis
familiaris].
Length = 372
Score = 140 bits (354), Expect = 2e-33
Identities = 79/213 (37%), Positives = 115/213 (53%), Gaps = 1/213 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQP-HKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRV 609
+L K R F LL + P +KC ++ LL+ +KS ++ERR+ VR+TWG+E +V
Sbjct: 83 FLLHKHCRDFQLLQDVPLNKC------SEPVFLLLVIKSSPKNYERRELVRRTWGSERQV 136
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G +RR+FL+G + +L E++A+ DIL W F D+FF
Sbjct: 137 KGVQLRRLFLVGTAPNPMEAHKV-------------NRLLAMEAQAHGDILQWNFHDSFF 183
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLK++ FL W C + FV GD DVF H N++ +L P + L G +I
Sbjct: 184 NLTLKQVLFLQWQETRCTNASFVLNGDDDVFAHTDNMVSYLKDHNPDRHLFVGHLIRNVG 243
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
PIR +YY+P+ V + YP Y GGGF+LS
Sbjct: 244 PIRVTWSKYYVPKIVTEEERYPPYCGGGGFLLS 276
>ref|XP_541601.2| PREDICTED: similar to UDP-Gal:betaGal beta 1,3-galactosyltransferase
polypeptide 7 [Canis familiaris].
Length = 413
Score = 117 bits (292), Expect = 2e-26
Identities = 79/219 (36%), Positives = 105/219 (47%), Gaps = 5/219 (2%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPD---LLIAVKSVAADFERRQAVRQTWGAE 600
R+L + R FP +P RG G D LL+AVKS RQAVR+TWG+
Sbjct: 151 RFLLSAACRSFPQW--RPGSGRGQVASCSGTDVPYLLLAVKSEPGHLRERQAVRETWGSP 208
Query: 601 GRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDD 780
VR +FL ES Y+D+LLW F D
Sbjct: 209 APG----VRLLFL--------------------------------ESHRYSDLLLWDFLD 232
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDV 954
FN TLK++ LAW +CP V F+ + D FVH LL+ L P A+ L G+V
Sbjct: 233 VSFNQTLKDLLLLAWLGRHCPGVSFILQTRDDAFVHTPALLDHLQALPPSWARGLYLGEV 292
Query: 955 IVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
QA+P R+ G YY+P++ + YPAYA GGG+V++G
Sbjct: 293 FTQAKPFRKPGGPYYVPKSFF-KGGYPAYASGGGYVIAG 330
>ref|XP_849233.1| PREDICTED: similar to UDP-Gal:betaGlcNAc beta
1,3-galactosyltransferase 2 [Canis familiaris].
Length = 422
Score = 111 bits (278), Expect = 1e-24
Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F +IN+P KC+ P L++ + + E R+A+RQTWG E G + R+FL
Sbjct: 136 FKYIINEPEKCQEKS-----PFLILLIAAEPGQTEARRAIRQTWGNESLAPGIQITRIFL 190
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LGV + + ESR Y DI+ + DT++NLT+K + +
Sbjct: 191 LGVS---------------IKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGM 235
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPRE--PAQDLLAGDVIVQARPIRRRGQQ 993
W + YCP + +V K DSD+FV+ L+ L + P + G ++ P R + +
Sbjct: 236 NWVATYCPHIPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSK 295
Query: 994 YYIPEAVYGLQAYPAYAXGGGFVLSG 1071
+Y+P +Y + YP + G G+V SG
Sbjct: 296 WYMPPDLYPSERYPVFCSGTGYVFSG 321
>ref|XP_545508.2| PREDICTED: similar to Beta-1,3-galactosyltransferase 1
(Beta-1,3-GalTase 1) (Beta3GalT1)
(UDP-galactose:beta-N-acetyl-glucosamine-beta-1,
3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta
1,3-galactosyltranferase-I) [Canis familiaris].
Length = 326
Score = 105 bits (262), Expect = 8e-23
Identities = 60/204 (29%), Positives = 102/204 (50%), Gaps = 1/204 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F LIN+P+KC + P L+I + + +F+ RQA+R+TWG E +G + +FL
Sbjct: 63 FEFLINEPNKCEKSI-----PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFL 117
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LG + M+ ES+ + DI++ F D++ NLTLK + +
Sbjct: 118 LGKNADPVL-----------------NQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGM 160
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLL-EFLAPREPAQDLLAGDVIVQARPIRRRGQQY 996
W + +C ++V K DSD+FV++ NL+ + L P + ++ PIR ++
Sbjct: 161 RWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKW 220
Query: 997 YIPEAVYGLQAYPAYAXGGGFVLS 1068
Y+P +Y YP + G G++ S
Sbjct: 221 YMPRDLYPDSNYPPFCSGTGYIFS 244
>ref|XP_544891.2| PREDICTED: similar to Beta-1,3-galactosyltransferase 5
(Beta-1,3-GalTase 5) (Beta3Gal-T5) (b3Gal-T5)
(UDP-galactose:beta-N-acetylglucosamine
beta-1,3-galactosyltransferase 5) (UDP-Gal:beta-GlcNAc
beta-1,3-galactosyltransferase 5) (Beta-3-Gx-T5)...
[Canis familiaris].
Length = 377
Score = 91.7 bits (226), Expect = 1e-18
Identities = 56/185 (30%), Positives = 83/185 (44%)
Frame = +1
Query: 514 DGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXX 693
D P L++ V S R +R TWG E V G ++ FLLG
Sbjct: 122 DPPFLVLLVTSSHEQVFVRTVIRNTWGKEKNVHGRPIKTFFLLGATASKDL--------- 172
Query: 694 XXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDS 873
S ++ ES+ + DI+ F D +FNLTLK + + W +CP FV K DS
Sbjct: 173 --------SKVVAQESQRHRDIIQKDFVDAYFNLTLKTMMGIEWIHRFCPQATFVMKTDS 224
Query: 874 DVFVHVGNLLEFLAPREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGG 1053
D+FV+V L E L + G + + PIR + ++++ + Y YP + G
Sbjct: 225 DMFVNVYYLTELLLKKNRTTRFFTGFLKLNEFPIRDKANKWFVSKYEYPWDKYPPFCSGT 284
Query: 1054 GFVLS 1068
G+V S
Sbjct: 285 GYVFS 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,326,660
Number of extensions: 1030441
Number of successful extensions: 7055
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6915
Number of HSP's successfully gapped: 13
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362238.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 177 7e-45
Alignment gi|XP_003360741.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 167 1e-41
Alignment gi|XP_003125160.2| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 167 1e-41
Alignment gi|XP_003354848.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 167 1e-41
Alignment gi|XP_003129726.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 159 2e-39
Alignment gi|XP_003123547.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 140 9e-34
Alignment gi|XP_003127204.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-ace... 130 1e-30
Alignment gi|NP_999492.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 121 8e-28
Alignment gi|XP_003130525.1| PREDICTED: beta-1,3-galactosyltransferase 2-... 112 3e-25
Alignment gi|XP_001924755.2| PREDICTED: beta-1,3-galactosyltransferase 1 ... 107 1e-23
>ref|XP_003362238.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 9-like, partial
[Sus scrofa].
Length = 236
Score = 177 bits (450), Expect = 7e-45
Identities = 86/98 (87%), Positives = 88/98 (89%)
Frame = +1
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIV 960
TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPR+PAQDLL
Sbjct: 34 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPRDPAQDLLXXXXXX 93
Query: 961 QARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
ARPIRRR +YYIPEAVYGLQAYPAYA GGGFVLSGA
Sbjct: 94 XARPIRRRTSKYYIPEAVYGLQAYPAYAGGGGFVLSGA 131
Score = 60.1 bits (144), Expect = 2e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 466 LLINQPHKCRGNGVPADGPDLLIAVKS 546
LLINQPHKCRGNGVPADGPDLLIAVKS
Sbjct: 1 LLINQPHKCRGNGVPADGPDLLIAVKS 27
>ref|XP_003360741.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus
scrofa].
Length = 397
Score = 167 bits (422), Expect = 1e-41
Identities = 98/215 (45%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ + F+RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLTSHFDRRQAIRESWGKETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CP+ FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVY-TGVYPPYAGGGGFLYSG 313
>ref|XP_003125160.2| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus
scrofa].
Length = 397
Score = 167 bits (422), Expect = 1e-41
Identities = 98/215 (45%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ + F+RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLTSHFDRRQAIRESWGKETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CP+ FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVY-TGVYPPYAGGGGFLYSG 313
>ref|XP_003354848.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 2-like [Sus
scrofa].
Length = 397
Score = 167 bits (422), Expect = 1e-41
Identities = 98/215 (45%), Positives = 124/215 (57%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ + F+RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLTSHFDRRQAIRESWGKETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CP+ FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPNAEFVFKGDDDVFVNTHHILNYLNSLSKNKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVY-TGVYPPYAGGGGFLYSG 313
>ref|XP_003129726.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 6-like [Sus
scrofa].
Length = 379
Score = 159 bits (403), Expect = 2e-39
Identities = 94/268 (35%), Positives = 131/268 (48%)
Frame = +1
Query: 265 AQTTSAPRAEGVAAPGPTPGVRVFEAPDTGAAPPVYXXXXXXXXXXXXXXXXXXGRYLRA 444
A ++ A R VAAP +PG R + +LR
Sbjct: 43 AGSSQADRVTPVAAPRSSPGPRCVANTSANSTADFEQLPARIQD------------FLRY 90
Query: 445 KDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALV 624
+ R FPLL + P KC G+ G LL+A+KS A++ERR +R+TWG E G V
Sbjct: 91 RHCRHFPLLWDAPAKCAGS----HGAFLLLAIKSSPANYERRDLIRRTWGQERSYIGRQV 146
Query: 625 RRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLK 804
RR+FLLG+ +A++ E+R + D+L WAF DTF NLTLK
Sbjct: 147 RRLFLLGIAAPEDAERAEQL-----------AALVALEAREHGDVLQWAFADTFLNLTLK 195
Query: 805 EIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARPIRRR 984
+H L W A C V F+ GD DVFVH N++ FL + P L G ++ + PIR
Sbjct: 196 HVHLLDWLEARCSRVHFLLSGDDDVFVHTANVVRFLEGQPPDHHLFTGQLMSGSVPIRDS 255
Query: 985 GQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
+Y++P ++ AYP Y GGGF++S
Sbjct: 256 WSKYFVPPQLFAGPAYPTYCSGGGFLMS 283
>ref|XP_003123547.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 3-like [Sus
scrofa].
Length = 374
Score = 140 bits (354), Expect = 9e-34
Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 1/213 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLIN-QPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRV 609
+L K R F LL + P KC A LL+ +KS +++ERR+ VR+TWG E +V
Sbjct: 85 FLLYKHCRDFVLLQDVPPDKC------AQPVFLLLVIKSSPSNYERRELVRRTWGHERQV 138
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
G LVRR+FL+G + +L E++ + DIL W F D+FF
Sbjct: 139 HGFLVRRLFLVGTDPNPLEALKV-------------NRLLAMEAQMHGDILQWDFYDSFF 185
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLK++ FL W C + FV GD DVF H GN++ +L P L G +I
Sbjct: 186 NLTLKQVLFLQWQETRCTNASFVLNGDDDVFAHTGNMVTYLQGHNPDHHLFVGHLIHNVG 245
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
PIR +YY+P+ V + YP Y GGGF+LS
Sbjct: 246 PIRFPWSKYYVPKVVMEDEHYPPYCGGGGFLLS 278
>ref|XP_003127204.1| PREDICTED: UDP-GlcNAc:betaGal
beta-1,3-N-acetylglucosaminyltransferase 8-like [Sus
scrofa].
Length = 397
Score = 130 bits (328), Expect = 1e-30
Identities = 83/219 (37%), Positives = 114/219 (52%), Gaps = 5/219 (2%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPD---LLIAVKSVAADFERRQAVRQTWGAE 600
R+L + R FP + P G + PD LL+A+KS F RQAVR+TWG
Sbjct: 117 RFLLSAACRSFPRWL--PRGSGGQVAGCEDPDIPYLLLAIKSEPGRFAERQAVRETWG-- 172
Query: 601 GRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDD 780
G G VR +FLLG P +++ ESR Y+D+LLW F D
Sbjct: 173 GPAPG--VRLLFLLGSPEGKAGPDL--------------GSLVAWESRRYSDLLLWDFLD 216
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDV 954
FN TLK++ LAW +CP V F+ + D FVH LL+ L P A+ L G+V
Sbjct: 217 VPFNQTLKDLLLLAWLGRHCPGVSFILQAQDDAFVHTPALLDHLRALPPGKARGLYLGEV 276
Query: 955 IVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
QA+P+RR G +Y+P + + YPAYA GGG++++G
Sbjct: 277 FTQAKPLRRPGDPFYVPGSFFE-GGYPAYASGGGYIIAG 314
>ref|NP_999492.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Sus
scrofa].
Length = 377
Score = 121 bits (303), Expect = 8e-28
Identities = 72/210 (34%), Positives = 105/210 (50%), Gaps = 5/210 (2%)
Frame = +1
Query: 457 RFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGAL---VR 627
R+ LIN KC+ V LL+ VK+ ++ RR A+R TWG E VQ L ++
Sbjct: 70 RYQYLINHEEKCQAQDVL-----LLLFVKTAPENYNRRSAIRNTWGNEKYVQSQLNANIK 124
Query: 628 RVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKE 807
+F+LG P R L E Y+DI+ F D+F+NLTLK
Sbjct: 125 TLFVLGTPSDPLM-------------RERLQRRLVWEDHMYSDIIQQDFVDSFYNLTLKF 171
Query: 808 IHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDVIVQARPIRR 981
+ WA+++CP +F+ D D+F+H+ NL+E+L E QD G V A P+R
Sbjct: 172 LLQFKWANSFCPHAKFLMTADDDIFIHMPNLIEYLQSLEQMGVQDFWIGRVHHGAPPVRD 231
Query: 982 RGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
+ +YY+ +Y AYP Y G +V+SG
Sbjct: 232 KSSKYYVSYDMYQWPAYPDYTAGAAYVISG 261
>ref|XP_003130525.1| PREDICTED: beta-1,3-galactosyltransferase 2-like [Sus scrofa].
Length = 422
Score = 112 bits (281), Expect = 3e-25
Identities = 64/206 (31%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F +IN+P KC+ P L++ + + E R+A+RQTWG E G + R+FL
Sbjct: 136 FKYIINEPEKCQEKS-----PFLILLIAAEPGQIEARRAIRQTWGNESLAPGIRITRIFL 190
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LGV + H + ESR + DI+ + DT++NLT+K + +
Sbjct: 191 LGVS---------------VKLQGHLQRAILEESRQHHDIIQQEYLDTYYNLTIKTLMGM 235
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPRE--PAQDLLAGDVIVQARPIRRRGQQ 993
W + YCP +V K DSD+FV+ L+ L + P + G ++ P R R +
Sbjct: 236 NWVATYCPQSPYVMKTDSDMFVNTEYLIHKLLKPDLPPRHNYFTGYLMRGYAPNRNRDSK 295
Query: 994 YYIPEAVYGLQAYPAYAXGGGFVLSG 1071
+Y+P +Y + YP + G G+V SG
Sbjct: 296 WYMPPDLYPSERYPVFCSGTGYVFSG 321
>ref|XP_001924755.2| PREDICTED: beta-1,3-galactosyltransferase 1 [Sus scrofa].
Length = 326
Score = 107 bits (267), Expect = 1e-23
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 1/204 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F LIN+P+KC N P L+I + + +F+ RQA+R+TWG E +G + +FL
Sbjct: 63 FEFLINEPNKCEKNI-----PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFL 117
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LG + M+ ES+ + DI++ F D++ NLTLK + +
Sbjct: 118 LGKNADPVL-----------------NQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGM 160
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLL-EFLAPREPAQDLLAGDVIVQARPIRRRGQQY 996
W + +C ++V K DSD+FV++ NL+ + L P + ++ PIR ++
Sbjct: 161 RWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKW 220
Query: 997 YIPEAVYGLQAYPAYAXGGGFVLS 1068
Y+P +Y YP + G G++ S
Sbjct: 221 YMPRDLYPDSNYPPFCSGTGYIFS 244
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,452,277
Number of extensions: 649961
Number of successful extensions: 4320
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 4219
Number of HSP's successfully gapped: 15
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_849210.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 352 3e-97
Alignment gi|NP_660257.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 200 1e-51
Alignment gi|NP_001074636.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 164 1e-40
Alignment gi|NP_001162585.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 164 1e-40
Alignment gi|NP_058584.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 164 1e-40
Alignment gi|NP_941013.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 148 6e-36
Alignment gi|NP_082465.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 145 5e-35
Alignment gi|NP_001031817.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 132 5e-31
Alignment gi|NP_666296.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 132 5e-31
Alignment gi|NP_001152880.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosam... 114 1e-25
>ref|NP_849210.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [Mus
musculus].
Length = 399
Score = 352 bits (903), Expect = 3e-97
Identities = 189/297 (63%), Positives = 208/297 (70%)
Frame = +1
Query: 184 RLRGEASITXXXXXXXXXXXYAQRDGAAQTTSAPRAEGVAAPGPTPGVRVFEAPDTGAAP 363
RL +A +T YAQRD A+ TT P A G P PTP +R E P+T A
Sbjct: 8 RLCPDAWLTLLLSAALGLLLYAQRDVASPTTRPP-ARGPQLPRPTPSLRARELPNTARAA 66
Query: 364 PVYXXXXXXXXXXXXXXXXXXGRYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVK 543
P+ G YLRAKDQRRFPLLINQ KCR +G PDLLIAVK
Sbjct: 67 PLAYEGDTPVPPTPTDPFDFGG-YLRAKDQRRFPLLINQRRKCRSDGASGGSPDLLIAVK 125
Query: 544 SVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSA 723
SVAADFERR+AVRQTWGAEGRVQGALVRRVFLLGVP+ TR+HW
Sbjct: 126 SVAADFERREAVRQTWGAEGRVQGALVRRVFLLGVPKGAGSGGAG--------TRSHWRT 177
Query: 724 MLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLL 903
+L AESRAYADILLWAF+DTFFNLTLKEIHFL+WASA+CPDV FVFKGD+DVFVHV NLL
Sbjct: 178 LLEAESRAYADILLWAFEDTFFNLTLKEIHFLSWASAFCPDVHFVFKGDADVFVHVRNLL 237
Query: 904 EFLAPREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
+FL R+PAQDLLAGDVIVQARPIR R +Y+IP AVYGL YPAYA GGGFVLSGA
Sbjct: 238 QFLELRDPAQDLLAGDVIVQARPIRARASKYFIPRAVYGLPVYPAYAGGGGFVLSGA 294
>ref|NP_660257.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Mus
musculus].
Length = 397
Score = 200 bits (509), Expect = 1e-51
Identities = 104/218 (47%), Positives = 133/218 (61%), Gaps = 3/218 (1%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRV 609
++L + R FP+L+N P KC G+ +L+ VKSV +RR+ +RQTWG E
Sbjct: 106 QFLAYRHCRYFPMLLNHPEKCAGDVY------MLVVVKSVITQHDRREVIRQTWGHEWES 159
Query: 610 QG---ALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDD 780
G VR +FLLG RTH+ +L E R YADIL W F D
Sbjct: 160 AGLGRGAVRTLFLLGTASKQEE-------------RTHYQQLLAYEDRLYADILQWDFLD 206
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIV 960
+FFNLTLKEIHFL W YCP+V FVFKGD DVFV+ NLLEFL+ R+P ++L GDV+
Sbjct: 207 SFFNLTLKEIHFLKWLDIYCPNVPFVFKGDDDVFVNPTNLLEFLSDRQPQENLFVGDVLK 266
Query: 961 QARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
ARPIR++ +YYIP +YG YP YA GGGF++SG+
Sbjct: 267 HARPIRKKDNKYYIPAVMYGKATYPPYAGGGGFLMSGS 304
>ref|NP_001074636.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 [Mus
musculus].
Length = 391
Score = 164 bits (415), Expect = 1e-40
Identities = 89/217 (41%), Positives = 119/217 (54%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
+LR + RRFP L + P KC G G LL+AVKS A +ERR+ +R+TWG E
Sbjct: 87 FLRYRHCRRFPQLWDAPPKCAG----PRGVFLLLAVKSSPAHYERRELIRRTWGQERSYS 142
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
G V R+FL+G + +L E+R Y D+L W F DTF N
Sbjct: 143 GRQVLRLFLVGTS-----------PPEEAAREPQLADLLSLEAREYGDVLQWDFSDTFLN 191
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARP 972
LTLK +H L W + +CP V F+ D DVFVH N+L FL + P L G ++V + P
Sbjct: 192 LTLKHLHLLDWTAEHCPGVSFLLSCDDDVFVHTANVLSFLEVQSPEHHLFTGQLMVGSVP 251
Query: 973 IRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGARYT 1083
+R G +Y++P ++ AYPAY GGGF+LS RYT
Sbjct: 252 VRESGSKYFVPPQIFPGVAYPAYCSGGGFLLS--RYT 286
>ref|NP_001162585.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [Mus
musculus].
Length = 397
Score = 164 bits (414), Expect = 1e-40
Identities = 98/215 (45%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ F RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPKKC------AKKPFLLLAIKSLIPHFARRQAIRESWGRETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------KTPPEDNHPDLSDMLKFESDKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CPD FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE Y YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVFY-TGVYPPYAGGGGFLYSG 313
>ref|NP_058584.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [Mus
musculus].
Length = 397
Score = 164 bits (414), Expect = 1e-40
Identities = 98/215 (45%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ F RRQA+R++WG E V
Sbjct: 122 YLRC---RNYSLLIDQPKKC------AKKPFLLLAIKSLIPHFARRQAIRESWGRETNVG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------KTPPEDNHPDLSDMLKFESDKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CPD FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPDAEFVFKGDDDVFVNTHHILNYLNSLSKSKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE Y YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVFY-TGVYPPYAGGGGFLYSG 313
>ref|NP_941013.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Mus
musculus].
Length = 350
Score = 148 bits (374), Expect = 6e-36
Identities = 88/215 (40%), Positives = 118/215 (54%), Gaps = 1/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR-V 609
+L + R F +L+ +P +C A LL+ +KS A E+R A+R TWG G
Sbjct: 70 FLTYRHCRNFSILL-EPSEC------ARDTFLLLVIKSQPAHIEQRSAIRSTWGRAGSWA 122
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G ++ VFLLGV + +L ES + DIL W F + FF
Sbjct: 123 RGRQLKLVFLLGVAGPVPP-----------------AQLLVYESWQFDDILQWDFAEDFF 165
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLKE+H W +A C F+ KGD DVF+HV N+LEFL +PAQD L GDVI AR
Sbjct: 166 NLTLKELHVQRWIAAACTQAHFILKGDDDVFIHVPNVLEFLEGWDPAQDFLVGDVIRLAR 225
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
P R +Y+IP ++Y + YP YA GGG+V+S A
Sbjct: 226 PNRNTKVKYFIPFSMYRARHYPPYAGGGGYVMSQA 260
>ref|NP_082465.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Mus
musculus].
Length = 372
Score = 145 bits (366), Expect = 5e-35
Identities = 83/207 (40%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Frame = +1
Query: 454 RRFPLLINQPH--KCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVR 627
R FP+L +P KC A+ LL+A+KS A++ RRQ +R TW E RV+GA +R
Sbjct: 90 RDFPVL-REPRVTKC------AEPVFLLLAIKSSPANYGRRQMLRTTWARERRVRGAPLR 142
Query: 628 RVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKE 807
R+FL+G R ++ +L E++ Y DIL W F D+FFNLTLK+
Sbjct: 143 RLFLVGSDRDPQQARK-------------YNRLLELEAQKYGDILQWDFHDSFFNLTLKQ 189
Query: 808 IHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARPIRRRG 987
+ FL W YC + FV GD DVF H N++ +L +P Q L G +I PIR
Sbjct: 190 VLFLEWQLTYCTNASFVLNGDDDVFAHTDNMVTYLQDHDPDQHLFVGHLIQNVGPIRVPW 249
Query: 988 QQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
+Y+IP V YP Y GGGF+LS
Sbjct: 250 SKYFIPALVMAEDRYPPYCGGGGFLLS 276
>ref|NP_001031817.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 [Mus
musculus].
Length = 389
Score = 132 bits (332), Expect = 5e-31
Identities = 87/222 (39%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPA------DGPDLLIAVKSVAADFERRQAVRQTW 591
R+L + R FPL + G G P D P LL+AVKS F RQAVR+TW
Sbjct: 109 RFLLSAACRSFPLWLPA-----GEGSPVASCSDKDVPYLLLAVKSEPGHFAARQAVRETW 163
Query: 592 GAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWA 771
G+ V G R +FLLG P +++ ESR Y D+LLW
Sbjct: 164 GSP--VAGT--RLLFLLGSPLGMGGPDLR--------------SLVTWESRRYGDLLLWD 205
Query: 772 FDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLA 945
F D +N TLK++ L W S +CPDV FV + D FVH+ LLE L P A+ L
Sbjct: 206 FLDVPYNRTLKDLLLLTWLSHHCPDVNFVLQVQDDAFVHIPALLEHLQTLPPTWARSLYL 265
Query: 946 GDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
G++ QA+P+R+ G +Y+P+ + YPAYA GGG+V+SG
Sbjct: 266 GEIFTQAKPLRKPGGPFYVPKTFFE-GDYPAYASGGGYVISG 306
>ref|NP_666296.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 [Mus
musculus].
Length = 389
Score = 132 bits (332), Expect = 5e-31
Identities = 87/222 (39%), Positives = 116/222 (52%), Gaps = 8/222 (3%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPA------DGPDLLIAVKSVAADFERRQAVRQTW 591
R+L + R FPL + G G P D P LL+AVKS F RQAVR+TW
Sbjct: 109 RFLLSAACRSFPLWLPA-----GEGSPVASCSDKDVPYLLLAVKSEPGHFAARQAVRETW 163
Query: 592 GAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWA 771
G+ V G R +FLLG P +++ ESR Y D+LLW
Sbjct: 164 GSP--VAGT--RLLFLLGSPLGMGGPDLR--------------SLVTWESRRYGDLLLWD 205
Query: 772 FDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLA 945
F D +N TLK++ L W S +CPDV FV + D FVH+ LLE L P A+ L
Sbjct: 206 FLDVPYNRTLKDLLLLTWLSHHCPDVNFVLQVQDDAFVHIPALLEHLQTLPPTWARSLYL 265
Query: 946 GDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
G++ QA+P+R+ G +Y+P+ + YPAYA GGG+V+SG
Sbjct: 266 GEIFTQAKPLRKPGGPFYVPKTFFE-GDYPAYASGGGYVISG 306
>ref|NP_001152880.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Mus
musculus].
Length = 376
Score = 114 bits (285), Expect = 1e-25
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 5/211 (2%)
Frame = +1
Query: 451 QRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGAL--- 621
Q +P LIN KC+ V LL+ +K+ ++ RR A+R+TWG E VQ L
Sbjct: 68 QPHYPYLINHREKCQAQDVL-----LLLFIKTAPENYGRRSAIRKTWGNENYVQSQLNAN 122
Query: 622 VRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTL 801
++ +F LG P L E + Y DI+ F D+F NLT
Sbjct: 123 IKILFALGTPGPLKGKEL--------------QKRLIGEDQVYKDIIQQDFIDSFHNLTS 168
Query: 802 KEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDVIVQARPI 975
K + +WA+ +CP +F+ D D+F+H+ NL+E+L E +D G V P+
Sbjct: 169 KFLLQFSWANTFCPHAKFLMTADDDIFIHMPNLIEYLQGLEQIGVRDFWIGHVHRGGPPV 228
Query: 976 RRRGQQYYIPEAVYGLQAYPAYAXGGGFVLS 1068
R + +YY+P +Y AYP Y G +V+S
Sbjct: 229 RDKSSKYYVPYEMYKWPAYPDYTAGAAYVVS 259
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,022,310
Number of extensions: 806148
Number of successful extensions: 4855
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 4742
Number of HSP's successfully gapped: 22
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_171608.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 413 e-115
Alignment gi|NP_660279.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 207 1e-53
Alignment gi|NP_619651.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 166 5e-41
Alignment gi|NP_006568.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 166 5e-41
Alignment gi|NP_110392.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 154 1e-37
Alignment gi|NP_055071.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 140 2e-33
Alignment gi|NP_940942.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 127 1e-29
Alignment gi|NP_114436.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminy... 120 2e-27
Alignment gi|NP_003774.1| beta-1,3-galactosyltransferase 2 [Homo sapiens]. 111 1e-24
Alignment gi|NP_066191.1| beta-1,3-galactosyltransferase 1 [Homo sapiens]. 107 2e-23
>ref|NP_171608.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 [Homo
sapiens].
Length = 402
Score = 413 bits (1061), Expect = e-115
Identities = 215/298 (72%), Positives = 225/298 (75%)
Frame = +1
Query: 181 LRLRGEASITXXXXXXXXXXXYAQRDGAAQTTSAPRAEGVAAPGPTPGVRVFEAPDTGAA 360
LRLR +A +T YAQRDGAA T SAPR G AAP PTPG R F+ PD GAA
Sbjct: 5 LRLRRDALLTLLLGASLGLLLYAQRDGAAPTASAPRGRGRAAPRPTPGPRAFQLPDAGAA 64
Query: 361 PPVYXXXXXXXXXXXXXXXXXXGRYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAV 540
PP Y RYLRAKDQRRFPLLINQPHKCRG+G P PDLLIAV
Sbjct: 65 PPAYEGDTPAPPTPTGPFDF--ARYLRAKDQRRFPLLINQPHKCRGDGAPGGRPDLLIAV 122
Query: 541 KSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWS 720
KSVA DFERRQAVRQTWGAEGRVQGALVRRVFLLGVPR RTHW
Sbjct: 123 KSVAEDFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRGAGSGGADEVGEG---ARTHWR 179
Query: 721 AMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNL 900
A+LRAES AYADILLWAFDDTFFNLTLKEIHFLAWASA+CPDVRFVFKGD+DVFV+VGNL
Sbjct: 180 ALLRAESLAYADILLWAFDDTFFNLTLKEIHFLAWASAFCPDVRFVFKGDADVFVNVGNL 239
Query: 901 LEFLAPREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
LEFLAPR+PAQDLLAGDVIV ARPIR R +YYIPEAVYGL AYPAYA GGGFVLSGA
Sbjct: 240 LEFLAPRDPAQDLLAGDVIVHARPIRTRASKYYIPEAVYGLPAYPAYAGGGGFVLSGA 297
>ref|NP_660279.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7 [Homo
sapiens].
Length = 401
Score = 207 bits (527), Expect = 1e-53
Identities = 108/218 (49%), Positives = 136/218 (62%), Gaps = 3/218 (1%)
Frame = +1
Query: 430 RYLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRV 609
++L + R FP+L+N P KCRG+ LL+ VKSV +RR+A+RQTWG E +
Sbjct: 110 QFLFYRHCRYFPMLLNHPEKCRGDVY------LLVVVKSVITQHDRREAIRQTWGRERQS 163
Query: 610 QGA---LVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDD 780
G VR +FLLG RTH+ +L E R Y DIL W F D
Sbjct: 164 AGGGRGAVRTLFLLGTASKQEE-------------RTHYQQLLAYEDRLYGDILQWGFLD 210
Query: 781 TFFNLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIV 960
TFFNLTLKEIHFL W YCP V F+FKGD DVFV+ NLLEFLA R+P ++L GDV+
Sbjct: 211 TFFNLTLKEIHFLKWLDIYCPHVPFIFKGDDDVFVNPTNLLEFLADRQPQENLFVGDVLQ 270
Query: 961 QARPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
ARPIRR+ +YYIP A+YG +YP YA GGGF+++G+
Sbjct: 271 HARPIRRKDNKYYIPGALYGKASYPPYAGGGGFLMAGS 308
>ref|NP_619651.3| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 [Homo
sapiens].
Length = 384
Score = 166 bits (419), Expect = 5e-41
Identities = 87/213 (40%), Positives = 119/213 (55%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
+LR + R FPLL + P KC G G LL+AVKS +ERR+ +R+TWG E
Sbjct: 92 FLRYRHCRHFPLLWDAPAKCAGGR----GVFLLLAVKSAPEHYERRELIRRTWGQERSYG 147
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
G VRR+FLLG P + ++ E+R + D+L WAF DTF N
Sbjct: 148 GRPVRRLFLLGTP-----------GPEDEARAERLAELVALEAREHGDVLQWAFADTFLN 196
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARP 972
LTLK +H L W +A CP RF+ GD DVFVH N++ FL + P + L +G ++ + P
Sbjct: 197 LTLKHLHLLDWLAARCPHARFLLSGDDDVFVHTANVVRFLQAQPPGRHLFSGQLMEGSVP 256
Query: 973 IRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
IR +Y++P ++ AYP Y GGGF+LSG
Sbjct: 257 IRDSWSKYFVPPQLFPGSAYPVYCSGGGFLLSG 289
>ref|NP_006568.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 [Homo
sapiens].
Length = 397
Score = 166 bits (419), Expect = 5e-41
Identities = 98/215 (45%), Positives = 121/215 (56%), Gaps = 2/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQ 612
YLR R + LLI+QP KC A P LL+A+KS+ F RRQA+R++WG E
Sbjct: 122 YLRC---RNYSLLIDQPDKC------AKKPFLLLAIKSLTPHFARRQAIRESWGQESNAG 172
Query: 613 GALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFN 792
V RVFLLG S ML+ ES + DIL+W + DTFFN
Sbjct: 173 NQTVVRVFLLG-------------QTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFN 219
Query: 793 LTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFL--APREPAQDLLAGDVIVQA 966
L+LKE+ FL W S CPD FVFKGD DVFV+ ++L +L + A+DL GDVI A
Sbjct: 220 LSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNA 279
Query: 967 RPIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
P R + +YYIPE VY YP YA GGGF+ SG
Sbjct: 280 GPHRDKKLKYYIPEVVYS-GLYPPYAGGGGFLYSG 313
>ref|NP_110392.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 [Homo
sapiens].
Length = 378
Score = 154 bits (389), Expect = 1e-37
Identities = 92/215 (42%), Positives = 118/215 (54%), Gaps = 1/215 (0%)
Frame = +1
Query: 433 YLRAKDQRRFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGR-V 609
+L + R F +L+ +P C + LL+A+KS ERR A+R TWG G
Sbjct: 96 FLTYRHCRNFSILL-EPSGCSKDTF------LLLAIKSQPGHVERRAAIRSTWGRVGGWA 148
Query: 610 QGALVRRVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFF 789
+G ++ VFLLGV + +L ESR + DIL W F + FF
Sbjct: 149 RGRQLKLVFLLGVAGSAPP-----------------AQLLAYESREFDDILQWDFTEDFF 191
Query: 790 NLTLKEIHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQAR 969
NLTLKE+H W A CP F+ KGD DVFVHV N+LEFL +PAQDLL GDVI QA
Sbjct: 192 NLTLKELHLQRWVVAACPQAHFMLKGDDDVFVHVPNVLEFLDGWDPAQDLLVGDVIRQAL 251
Query: 970 PIRRRGQQYYIPEAVYGLQAYPAYAXGGGFVLSGA 1074
P R +Y+IP ++Y YP YA GGG+V+S A
Sbjct: 252 PNRNTKVKYFIPPSMYRATHYPPYAGGGGYVMSRA 286
>ref|NP_055071.2| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 [Homo
sapiens].
Length = 372
Score = 140 bits (354), Expect = 2e-33
Identities = 86/266 (32%), Positives = 124/266 (46%), Gaps = 2/266 (0%)
Frame = +1
Query: 277 SAPRAEGVAAPGPTPGVRVFEAPDTGAAP-PVYXXXXXXXXXXXXXXXXXXGRYLRAKDQ 453
S P + P P + P T AP P + +L +
Sbjct: 30 SPPTCKVQEQPPAIPEALAWPTPPTRPAPAPCHANTSMVTHPDFATQPQHVQNFLLYRHC 89
Query: 454 RRFPLLIN-QPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRR 630
R FPLL + P KC A LL+ +KS +++ RR+ +R+TWG E +V+G +R
Sbjct: 90 RHFPLLQDVPPSKC------AQPVFLLLVIKSSPSNYVRRELLRRTWGRERKVRGLQLRL 143
Query: 631 VFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEI 810
+FL+G + +L E++ + DIL W F D+FFNLTLK++
Sbjct: 144 LFLVGTASNPHEARKV-------------NRLLELEAQTHGDILQWDFHDSFFNLTLKQV 190
Query: 811 HFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREPAQDLLAGDVIVQARPIRRRGQ 990
FL W C + FV GD DVF H N++ +L +P + L G +I PIR
Sbjct: 191 LFLQWQETRCANASFVLNGDDDVFAHTDNMVFYLQDHDPGRHLFVGQLIQNVGPIRAFWS 250
Query: 991 QYYIPEAVYGLQAYPAYAXGGGFVLS 1068
+YY+PE V + YP Y GGGF+LS
Sbjct: 251 KYYVPEVVTQNERYPPYCGGGGFLLS 276
>ref|NP_940942.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8 [Homo
sapiens].
Length = 397
Score = 127 bits (320), Expect = 1e-29
Identities = 76/188 (40%), Positives = 101/188 (53%), Gaps = 2/188 (1%)
Frame = +1
Query: 514 DGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFLLGVPRXXXXXXXXXXXXX 693
D P LL+AVKS F RQAVR+TWG+ +R +FLLG P
Sbjct: 146 DVPYLLLAVKSEPGRFAERQAVRETWGSPAPG----IRLLFLLGSP-------------- 187
Query: 694 XXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFLAWASAYCPDVRFVFKGDS 873
+++ ESR Y+D+LLW F D FN TLK++ LAW +CP V FV +
Sbjct: 188 VGEAGPDLDSLVAWESRRYSDLLLWDFLDVPFNQTLKDLLLLAWLGRHCPTVSFVLRAQD 247
Query: 874 DVFVHVGNLLEFL--APREPAQDLLAGDVIVQARPIRRRGQQYYIPEAVYGLQAYPAYAX 1047
D FVH LL L P A+ L G+V QA P+R+ G +Y+PE+ + YPAYA
Sbjct: 248 DAFVHTPALLAHLRALPPASARSLYLGEVFTQAMPLRKPGGPFYVPESFFE-GGYPAYAS 306
Query: 1048 GGGFVLSG 1071
GGG+V++G
Sbjct: 307 GGGYVIAG 314
>ref|NP_114436.1| UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [Homo
sapiens].
Length = 378
Score = 120 bits (301), Expect = 2e-27
Identities = 71/210 (33%), Positives = 104/210 (49%), Gaps = 5/210 (2%)
Frame = +1
Query: 457 RFPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGAL---VR 627
R+ LIN KC+ V LL+ VK+ +++RR +R+TWG E V+ L ++
Sbjct: 72 RYQYLINHKEKCQAQDVL-----LLLFVKTAPENYDRRSGIRRTWGNENYVRSQLNANIK 126
Query: 628 RVFLLGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKE 807
+F LG P L E + Y DI+ F D+F+NLTLK
Sbjct: 127 TLFALGTPNPLEGEEL--------------QRKLAWEDQRYNDIIQQDFVDSFYNLTLKL 172
Query: 808 IHFLAWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPREP--AQDLLAGDVIVQARPIRR 981
+ +WA+ YCP +F+ D D+F+H+ NL+E+L E QD G V A PIR
Sbjct: 173 LMQFSWANTYCPHAKFLMTADDDIFIHMPNLIEYLQSLEQIGVQDFWIGRVHRGAPPIRD 232
Query: 982 RGQQYYIPEAVYGLQAYPAYAXGGGFVLSG 1071
+ +YY+ +Y AYP Y G +V+SG
Sbjct: 233 KSSKYYVSYEMYQWPAYPDYTAGAAYVISG 262
>ref|NP_003774.1| beta-1,3-galactosyltransferase 2 [Homo sapiens].
Length = 422
Score = 111 bits (277), Expect = 1e-24
Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 2/206 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F +IN+P KC+ P L++ + + E R+A+RQTWG E G + R+FL
Sbjct: 136 FKYIINEPEKCQEKS-----PFLILLIAAEPGQIEARRAIRQTWGNESLAPGIQITRIFL 190
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LG+ + + ESR Y DI+ + DT++NLT+K + +
Sbjct: 191 LGLS---------------IKLNGYLQRAILEESRQYHDIIQQEYLDTYYNLTIKTLMGM 235
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLLEFLAPRE--PAQDLLAGDVIVQARPIRRRGQQ 993
W + YCP + +V K DSD+FV+ L+ L + P + G ++ P R + +
Sbjct: 236 NWVATYCPHIPYVMKTDSDMFVNTEYLINKLLKPDLPPRHNYFTGYLMRGYAPNRNKDSK 295
Query: 994 YYIPEAVYGLQAYPAYAXGGGFVLSG 1071
+Y+P +Y + YP + G G+V SG
Sbjct: 296 WYMPPDLYPSERYPVFCSGTGYVFSG 321
>ref|NP_066191.1| beta-1,3-galactosyltransferase 1 [Homo sapiens].
Length = 326
Score = 107 bits (267), Expect = 2e-23
Identities = 61/204 (29%), Positives = 102/204 (50%), Gaps = 1/204 (0%)
Frame = +1
Query: 460 FPLLINQPHKCRGNGVPADGPDLLIAVKSVAADFERRQAVRQTWGAEGRVQGALVRRVFL 639
F LIN+P+KC N P L+I + + +F+ RQA+R+TWG E +G + +FL
Sbjct: 63 FEFLINEPNKCEKNI-----PFLVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFL 117
Query: 640 LGVPRXXXXXXXXXXXXXXXXTRTHWSAMLRAESRAYADILLWAFDDTFFNLTLKEIHFL 819
LG + M+ ES+ + DI++ F D++ NLTLK + +
Sbjct: 118 LGKNADPVL-----------------NQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGM 160
Query: 820 AWASAYCPDVRFVFKGDSDVFVHVGNLL-EFLAPREPAQDLLAGDVIVQARPIRRRGQQY 996
W + +C ++V K DSD+FV++ NL+ + L P + ++ PIR ++
Sbjct: 161 RWVATFCSKAKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKW 220
Query: 997 YIPEAVYGLQAYPAYAXGGGFVLS 1068
Y+P +Y YP + G G++ S
Sbjct: 221 YMPRDLYPDSNYPPFCSGTGYIFS 244
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,246,177
Number of extensions: 987837
Number of successful extensions: 5942
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5836
Number of HSP's successfully gapped: 22
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008529
(1085 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896501.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 319 2e-84
>gb|GL896501.1| Sus scrofa unplaced genomic scaffold chrU_scaffold835
Length = 23878
Score = 319 bits (161), Expect = 2e-84
Identities = 164/165 (99%)
Strand = Plus / Plus
Query: 779 acactttcttcaacctaacgctcaaggagatccactttctggcctgggcctccgcctact 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9383 acactttcttcaacctaacgctcaaggagatccactttctggcctgggcctccgcctact 9442
Query: 839 gccccgacgtgcgcttcgtttttaagggcgactccgacgtgtttgtgcacgtgggaaatc 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9443 gccccgacgtgcgcttcgtttttaagggcgactccgacgtgtttgtgcacgtgggaaatc 9502
Query: 899 tgctggagttcctggcgccgcgggaaccggcgcaggatctgcttg 943
||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 9503 tgctggagttcctggcgccgcgggacccggcgcaggatctgcttg 9547
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 465 tctgctcattaaccagccacacaagtgccgaggaaatggcgtacctgctgacggacctga 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9032 tctgctcattaaccagccacacaagtgccgaggaaatggcgtacctgctgacggacctga 9091
Query: 525 cctgctcatcgccgtcaagtcagtg 549
|||||||||||||||||||||||||
Sbjct: 9092 cctgctcatcgccgtcaagtcagtg 9116
Score = 168 bits (85), Expect = 4e-39
Identities = 107/112 (95%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 963 ggcgcggccaatccgccggcggggacagca-gtactacatccctgaggctgtatacggcc 1021
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 9648 ggcgcggccaatccgccggcggac-cagcaagtactacatccctgaggctgtatacggcc 9706
Query: 1022 tgcaggcgtatccggcctacgcangcggcggtggcttcgtgctctctggagc 1073
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9707 tgcaggcgtatccggcctacgcaggcggcggtggcttcgtgctctctggagc 9758
Score = 147 bits (74), Expect = 1e-32
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 ccttcctgccaacgttgcatttggcccaggccccgtccatggccgcccttgggaccctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8312 ccttcctgccaacgttgcatttggcccaggccccgtccatggccgcccttgggaccctgc 8371
Query: 61 gctgagccccggag 74
||||||||||||||
Sbjct: 8372 gctgagccccggag 8385
Score = 143 bits (72), Expect = 2e-31
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 142 gggggcgcgggcgccggccacgcggacatgaggcggaggctgcgcctacgcggagaagca 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8695 gggggcgcgggcgccggccacgcggacatgaggcggaggctgcgcctacgcggagaagca 8754
Query: 202 tctatcacgctg 213
||||||||||||
Sbjct: 8755 tctatcacgctg 8766
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 307 ccagggcccaccccgggggtccgagtgtttgaggcgccggacacgggcgcggccccgccg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8867 ccagggcccaccccgggggtccgagtgtttgaggcgccggacacgggcgcggccccgccg 8926
Query: 367 gtcta 371
|||||
Sbjct: 8927 gtcta 8931
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 17,570,570
Number of extensions: 64
Number of successful extensions: 64
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 6
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)