Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039617.1| hypothetical protein LOC513550 [Bos taurus]. 389 e-108
Alignment gi|XP_002698007.1| PREDICTED: hypothetical protein [Bos taurus]. 258 9e-69
Alignment gi|XP_001789414.2| PREDICTED: hypothetical protein [Bos taurus]. 258 9e-69
>ref|NP_001039617.1| hypothetical protein LOC513550 [Bos taurus].
Length = 208
Score = 389 bits (1000), Expect = e-108
Identities = 189/196 (96%), Positives = 194/196 (98%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRPKK +IRHPVASFFHLFFRVSAIIVYLLCELFSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPKKSRIRHPVASFFHLFFRVSAIIVYLLCELFSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQE +TVS
Sbjct: 61 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQEGKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGLVACPVLWV+FAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK
Sbjct: 121 EAESRIFWLGLVACPVLWVVFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 180
Query: 564 NLTSMATSYLGKQFLR 611
NLTSMAT+YLG+QFLR
Sbjct: 181 NLTSMATTYLGRQFLR 196
>ref|XP_002698007.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 213
Score = 258 bits (658), Expect = 9e-69
Identities = 120/192 (62%), Positives = 153/192 (79%), Gaps = 1/192 (0%)
Frame = +3
Query: 27 LQQDSNDDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
++Q DDTEDVSL F EEE R K KIRHPVA+FFHLFFRVSAI+ Y+ C+ FS S
Sbjct: 1 MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPVATFFHLFFRVSAIVTYVGCDWFSKS 58
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
F+ C VT++LLLS DFW+VKNVTGRLMVGLRWWN IDEDGKSHW+FE+RK SP + +
Sbjct: 59 FVGCFVTVLLLLSFDFWSVKNVTGRLMVGLRWWNQIDEDGKSHWIFEARKVSP-DMVAAT 117
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAE+R+FWLGL+ CP++W++F FS+LFS ++KWLA+VI G+ LQ ANLYGY+ CK+GS
Sbjct: 118 EAEARVFWLGLIVCPMIWIVFFFSSLFSLKLKWLALVIAGISLQAANLYGYVLCKMGSES 177
Query: 564 NLTSMATSYLGK 599
N++ + S+L +
Sbjct: 178 NISKVTASFLSQ 189
>ref|XP_001789414.2| PREDICTED: hypothetical protein [Bos taurus].
Length = 213
Score = 258 bits (658), Expect = 9e-69
Identities = 120/192 (62%), Positives = 153/192 (79%), Gaps = 1/192 (0%)
Frame = +3
Query: 27 LQQDSNDDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
++Q DDTEDVSL F EEE R K KIRHPVA+FFHLFFRVSAI+ Y+ C+ FS S
Sbjct: 1 MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPVATFFHLFFRVSAIVTYVGCDWFSKS 58
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
F+ C VT++LLLS DFW+VKNVTGRLMVGLRWWN IDEDGKSHW+FE+RK SP + +
Sbjct: 59 FVGCFVTVLLLLSFDFWSVKNVTGRLMVGLRWWNQIDEDGKSHWIFEARKVSP-DMVAAT 117
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAE+R+FWLGL+ CP++W++F FS+LFS ++KWLA+VI G+ LQ ANLYGY+ CK+GS
Sbjct: 118 EAEARVFWLGLIVCPMIWIVFFFSSLFSLKLKWLALVIAGISLQAANLYGYVLCKMGSES 177
Query: 564 NLTSMATSYLGK 599
N++ + S+L +
Sbjct: 178 NISKVTASFLSQ 189
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,039,683
Number of extensions: 1094419
Number of successful extensions: 3659
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3638
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546636.2| PREDICTED: similar to RIKEN cDNA 1810036I24 [Ca... 388 e-108
Alignment gi|XP_547129.2| PREDICTED: similar to RIKEN cDNA 1810036I24 [Ca... 256 4e-68
>ref|XP_546636.2| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris].
Length = 205
Score = 388 bits (996), Expect = e-108
Identities = 188/196 (95%), Positives = 194/196 (98%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEET+NRPKK KIRHPVASFFHLFFRVSAI+VYLLCELFSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETSNRPKKSKIRHPVASFFHLFFRVSAIVVYLLCELFSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKAS QE++TVS
Sbjct: 61 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASAQESKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGL+ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 180
Query: 564 NLTSMATSYLGKQFLR 611
NLT+MATSYLGKQFLR
Sbjct: 181 NLTNMATSYLGKQFLR 196
>ref|XP_547129.2| PREDICTED: similar to RIKEN cDNA 1810036I24 [Canis familiaris].
Length = 213
Score = 256 bits (653), Expect = 4e-68
Identities = 120/192 (62%), Positives = 151/192 (78%), Gaps = 1/192 (0%)
Frame = +3
Query: 27 LQQDSNDDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
++Q DDTEDVSL F E+E R K KIRHP+A+FFHLFFRVSAI+ Y+ C+ FS S
Sbjct: 1 MKQALVDDTEDVSLDFGNEDELAFR--KAKIRHPLATFFHLFFRVSAIVTYVCCDWFSRS 58
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
F+ C VT++LLLS DFW+VKNVTGRLMVGLRWWN IDEDGKSHW+FE+RKASP +
Sbjct: 59 FVGCFVTVLLLLSFDFWSVKNVTGRLMVGLRWWNQIDEDGKSHWIFEARKASPNHI-AAT 117
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAE+RIFWLGL+ CP++W++F FS LFS ++KWLA+VI G+ LQ ANLYGYI CK+G
Sbjct: 118 EAEARIFWLGLIICPLIWIVFLFSTLFSLKLKWLALVIAGISLQAANLYGYILCKMGGES 177
Query: 564 NLTSMATSYLGK 599
+L+ + S+L +
Sbjct: 178 DLSKVTASFLSQ 189
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,630,517
Number of extensions: 1111230
Number of successful extensions: 3699
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132066.1| PREDICTED: protein FAM18B1-like isoform 1 [S... 400 e-112
Alignment gi|XP_003132067.1| PREDICTED: protein FAM18B1-like isoform 2 [S... 317 6e-87
Alignment gi|XP_003354659.1| PREDICTED: protein FAM18A-like [Sus scrofa]. 250 9e-67
Alignment gi|XP_003361596.1| PREDICTED: protein FAM18A-like [Sus scrofa]. 232 3e-61
Alignment gi|XP_003354660.1| PREDICTED: tektin-5-like [Sus scrofa]. 213 1e-55
>ref|XP_003132066.1| PREDICTED: protein FAM18B1-like isoform 1 [Sus scrofa].
Length = 205
Score = 400 bits (1028), Expect = e-112
Identities = 196/196 (100%), Positives = 196/196 (100%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS
Sbjct: 61 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK
Sbjct: 121 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 180
Query: 564 NLTSMATSYLGKQFLR 611
NLTSMATSYLGKQFLR
Sbjct: 181 NLTSMATSYLGKQFLR 196
>ref|XP_003132067.1| PREDICTED: protein FAM18B1-like isoform 2 [Sus scrofa].
Length = 175
Score = 317 bits (813), Expect = 6e-87
Identities = 166/196 (84%), Positives = 166/196 (84%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVK ASPQETRTVS
Sbjct: 61 FIACMVTIILLLSCDFWAVK------------------------------ASPQETRTVS 90
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK
Sbjct: 91 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 150
Query: 564 NLTSMATSYLGKQFLR 611
NLTSMATSYLGKQFLR
Sbjct: 151 NLTSMATSYLGKQFLR 166
>ref|XP_003354659.1| PREDICTED: protein FAM18A-like [Sus scrofa].
Length = 329
Score = 250 bits (639), Expect = 9e-67
Identities = 115/186 (61%), Positives = 147/186 (79%), Gaps = 1/186 (0%)
Frame = +3
Query: 45 DDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMV 221
DDTEDVSL F EEE R K KIRHP+A+FFHLFFRVSAI+ Y+ C+ FS SF C V
Sbjct: 123 DDTEDVSLDFGNEEELALR--KAKIRHPLATFFHLFFRVSAIVTYVGCDWFSRSFAGCFV 180
Query: 222 TIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVSEAESRI 401
T++LLL+ DFW+VKNVTGRLMVGLRWWN IDEDGKSHW+FE+RK SP +EAE+R+
Sbjct: 181 TVLLLLTLDFWSVKNVTGRLMVGLRWWNQIDEDGKSHWIFEARKVSPHHV-AATEAEARV 239
Query: 402 FWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMA 581
FWLGL+ CP++W++F FS+LFS ++KWLA+VI G+ LQ ANLYGY+ CK+G +++ +
Sbjct: 240 FWLGLIICPMIWIVFFFSSLFSLKLKWLALVIAGISLQAANLYGYVLCKMGGESDISKIT 299
Query: 582 TSYLGK 599
S+L +
Sbjct: 300 ASFLSQ 305
>ref|XP_003361596.1| PREDICTED: protein FAM18A-like [Sus scrofa].
Length = 347
Score = 232 bits (592), Expect = 3e-61
Identities = 99/161 (61%), Positives = 131/161 (81%)
Frame = +3
Query: 117 RHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLR 296
RHP+A+FFHLFFRVSAI+ Y+ C+ FS SF C VT++LLL+ DFW+VKNVTGRLMVGLR
Sbjct: 171 RHPLATFFHLFFRVSAIVTYVGCDWFSRSFAGCFVTVLLLLTLDFWSVKNVTGRLMVGLR 230
Query: 297 WWNHIDEDGKSHWVFESRKASPQETRTVSEAESRIFWLGLVACPVLWVIFAFSALFSFRV 476
WWN IDEDGKSHW+FE+RK SP +EAE+R+FWLGL+ CP++W++F FS+LFS ++
Sbjct: 231 WWNQIDEDGKSHWIFEARKVSPHHV-AATEAEARVFWLGLIICPMIWIVFFFSSLFSLKL 289
Query: 477 KWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATSYLGK 599
KWLA+VI G+ LQ ANLYGY+ CK+G +++ + S+L +
Sbjct: 290 KWLALVIAGISLQAANLYGYVLCKMGGESDISKITASFLSQ 330
>ref|XP_003354660.1| PREDICTED: tektin-5-like [Sus scrofa].
Length = 654
Score = 213 bits (543), Expect = 1e-55
Identities = 93/161 (57%), Positives = 124/161 (77%)
Frame = +3
Query: 117 RHPVASFFHLFFRVSAIIVYLLCELFSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLR 296
+HP+A+FFHLFFRVSAI+ Y+ C+ FS SF C VT++LLL+ DFW+VKNVTGRLMVGLR
Sbjct: 481 QHPLATFFHLFFRVSAIVTYVGCDWFSRSFAGCFVTVLLLLTLDFWSVKNVTGRLMVGLR 540
Query: 297 WWNHIDEDGKSHWVFESRKASPQETRTVSEAESRIFWLGLVACPVLWVIFAFSALFSFRV 476
WWN IDEDGKSHW+FE+RK SP +EAE+R+FWLGL+ CP++W++F FS+LFS ++
Sbjct: 541 WWNQIDEDGKSHWIFEARKVSPHHV-AATEAEARVFWLGLIICPMIWIVFFFSSLFSLKL 599
Query: 477 KWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMATSYLGK 599
KWLA ANLYGY+ CK+G +++ + S+L +
Sbjct: 600 KWLA----------ANLYGYVLCKMGGESDISKITASFLSQ 630
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,618,203
Number of extensions: 695813
Number of successful extensions: 2418
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2405
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080486.1| hypothetical protein LOC67510 [Mus musculus]. 382 e-106
Alignment gi|XP_001474238.1| PREDICTED: protein FAM18B-like [Mus musculus]. 380 e-106
Alignment gi|NP_001013800.1| hypothetical protein LOC383103 [Mus musculus]. 253 2e-67
>ref|NP_080486.1| hypothetical protein LOC67510 [Mus musculus].
Length = 205
Score = 382 bits (982), Expect = e-106
Identities = 182/196 (92%), Positives = 192/196 (97%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
ML QDSNDDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSA++VYLLCEL SSS
Sbjct: 1 MLSQDSNDDTEDVSLFDAEEETTNRPRKSKIRHPVASFFHLFFRVSAVVVYLLCELLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK++PQ+ +T+S
Sbjct: 61 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKSTPQDNKTIS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGL+ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGS+K
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSKK 180
Query: 564 NLTSMATSYLGKQFLR 611
NLTSMATSYLGKQFLR
Sbjct: 181 NLTSMATSYLGKQFLR 196
>ref|XP_001474238.1| PREDICTED: protein FAM18B-like [Mus musculus].
Length = 265
Score = 380 bits (977), Expect = e-106
Identities = 181/196 (92%), Positives = 192/196 (97%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
ML QDS+DDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSA++VYLLCEL SSS
Sbjct: 1 MLSQDSHDDTEDVSLFDAEEETTNRPRKSKIRHPVASFFHLFFRVSAVVVYLLCELLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK++PQ+ +T+S
Sbjct: 61 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKSTPQDNKTIS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGL+ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGS+K
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSKK 180
Query: 564 NLTSMATSYLGKQFLR 611
NLTSMATSYLGKQFLR
Sbjct: 181 NLTSMATSYLGKQFLR 196
>ref|NP_001013800.1| hypothetical protein LOC383103 [Mus musculus].
Length = 222
Score = 253 bits (647), Expect = 2e-67
Identities = 121/195 (62%), Positives = 150/195 (76%), Gaps = 1/195 (0%)
Frame = +3
Query: 18 AAMLQQDSNDDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELF 194
A + Q DDTEDVSL F EEE R K KIRHP+A+FFHLFFRVSAI+ Y+ C+ F
Sbjct: 7 APAVPQGLGDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVCCDWF 64
Query: 195 SSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETR 374
S SF+ C VT++LLLS DFW+VKNVTGRLMVGLRWWN IDEDGKSHW+FE+RK S
Sbjct: 65 SKSFVGCFVTVLLLLSFDFWSVKNVTGRLMVGLRWWNQIDEDGKSHWIFEARKVSANH-M 123
Query: 375 TVSEAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVG 554
+EAE+RIFWLGL+ CPV+W++F FS LFS ++KWLA+VI G+ LQ ANLYGYI CK+G
Sbjct: 124 AATEAEARIFWLGLIICPVIWIVFFFSTLFSLKLKWLALVIAGISLQAANLYGYILCKMG 183
Query: 555 SRKNLTSMATSYLGK 599
++ ++A S+L +
Sbjct: 184 GDGDMRTVAASFLSQ 198
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,743,177
Number of extensions: 952927
Number of successful extensions: 3248
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3234
Number of HSP's successfully gapped: 3
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057162.4| hypothetical protein LOC51030 [Homo sapiens]. 374 e-104
Alignment gi|NP_001128508.1| hypothetical protein LOC201158 isoform 2 [Ho... 368 e-102
Alignment gi|NP_001191407.1| hypothetical protein LOC100533496 [Homo sapi... 294 1e-79
Alignment gi|NP_660344.2| hypothetical protein LOC201158 isoform 1 [Homo ... 294 1e-79
Alignment gi|NP_001072980.1| hypothetical protein LOC780776 [Homo sapiens]. 249 3e-66
>ref|NP_057162.4| hypothetical protein LOC51030 [Homo sapiens].
Length = 205
Score = 374 bits (961), Expect = e-104
Identities = 183/196 (93%), Positives = 187/196 (95%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSAIIVYLLC L SSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVYLLCGLLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FI CMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK S QE +TVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGL+ACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKV SRK
Sbjct: 121 EAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
Query: 564 NLTSMATSYLGKQFLR 611
+LTSMATSY GKQFLR
Sbjct: 181 HLTSMATSYFGKQFLR 196
>ref|NP_001128508.1| hypothetical protein LOC201158 isoform 2 [Homo sapiens].
Length = 203
Score = 368 bits (945), Expect = e-102
Identities = 181/196 (92%), Positives = 185/196 (94%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSAIIV LLCEL SSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FI CMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK S QE +TVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAESRIFWLGL+AC VLWVIFAFSALFSF VKWLAVVIMGVVLQGANLYGYIRCKV SRK
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWLAVVIMGVVLQGANLYGYIRCKVRSRK 180
Query: 564 NLTSMATSYLGKQFLR 611
+LTSMATSY GKQFLR
Sbjct: 181 HLTSMATSYFGKQFLR 196
>ref|NP_001191407.1| hypothetical protein LOC100533496 [Homo sapiens].
Length = 164
Score = 294 bits (752), Expect = 1e-79
Identities = 142/154 (92%), Positives = 145/154 (94%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSAIIV LLCEL SSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FI CMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK S QE +TVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWL 485
EAESRIFWLGL+AC VLWVIFAFSALFSF VKWL
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154
>ref|NP_660344.2| hypothetical protein LOC201158 isoform 1 [Homo sapiens].
Length = 276
Score = 294 bits (752), Expect = 1e-79
Identities = 142/154 (92%), Positives = 145/154 (94%)
Frame = +3
Query: 24 MLQQDSNDDTEDVSLFDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
MLQQDSNDDTEDVSLFDAEEETTNRP+K KIRHPVASFFHLFFRVSAIIV LLCEL SSS
Sbjct: 1 MLQQDSNDDTEDVSLFDAEEETTNRPRKAKIRHPVASFFHLFFRVSAIIVCLLCELLSSS 60
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
FI CMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRK S QE +TVS
Sbjct: 61 FITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKESSQENKTVS 120
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWL 485
EAESRIFWLGL+AC VLWVIFAFSALFSF VKWL
Sbjct: 121 EAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154
>ref|NP_001072980.1| hypothetical protein LOC780776 [Homo sapiens].
Length = 213
Score = 249 bits (637), Expect = 3e-66
Identities = 116/192 (60%), Positives = 148/192 (77%), Gaps = 1/192 (0%)
Frame = +3
Query: 27 LQQDSNDDTEDVSL-FDAEEETTNRPKKPKIRHPVASFFHLFFRVSAIIVYLLCELFSSS 203
++Q DDTEDVSL F EEE R K KIRHP+A+FFHLFFRVSAI+ Y+ C+ FS S
Sbjct: 1 MKQALVDDTEDVSLDFGNEEELAFR--KAKIRHPLATFFHLFFRVSAIVTYVSCDWFSKS 58
Query: 204 FIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDEDGKSHWVFESRKASPQETRTVS 383
F+ C V ++LLLS DFW+VKNVTGRL+VGLRWWN IDEDGKSHW+FE+RK SP +
Sbjct: 59 FVGCFVMVLLLLSLDFWSVKNVTGRLLVGLRWWNQIDEDGKSHWIFEARKVSPNSI-AAT 117
Query: 384 EAESRIFWLGLVACPVLWVIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRK 563
EAE+RIFWLGL+ CP++W++F FS LFS ++KWLA+V+ G+ LQ ANLYGYI CK+G
Sbjct: 118 EAEARIFWLGLIICPMIWIVFFFSTLFSLKLKWLALVVAGISLQAANLYGYILCKMGGNS 177
Query: 564 NLTSMATSYLGK 599
++ + S+L +
Sbjct: 178 DIGKVTASFLSQ 189
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,109,967
Number of extensions: 1113118
Number of successful extensions: 3645
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3630
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008540
(1177 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 946 0.0
Sscrofa_Chr15 111 9e-22
>Sscrofa_Chr12
|| Length = 63588571
Score = 946 bits (477), Expect = 0.0
Identities = 537/559 (96%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 615 accacaggagacgatcagacatcctgaggagacggagggagcctgcctgtccttcacatt 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61906582 accacaggagacgatcagacatcctgaggagacggagggagcctgcctgtccttcacatt 61906641
Query: 675 gggaacagctgagcctttcgaactcagtgcatattgcaaggaggagtgttgggtttgttt 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61906642 gggaacagctgagcctttcgaactcagtgcatattgcaaggaggagtgttgggtttgttt 61906701
Query: 735 ttccattagaaaattttctttcnnnnnnnnnngtagtcttcatattaagtttttacttcc 794
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 61906702 ttccattagaaaattttctttcaaaaaaaaaagtagtcttcatattaagtttttacttcc 61906761
Query: 795 ttttagcatttggggcttgaaggtgtggcgtggctggaaacactgtcggcgttggggtca 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61906762 ttttagcatttggggcttgaaggtgtggcgtggctggaaacactgtcggcgttggggtca 61906821
Query: 855 tggtttgcacccgcgcacaggtggtcacctagggccctgcgccttaggttaacacagtgg 914
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 61906822 tggtttgcacccgcgcacaggtggtcacctagggccctgcgtcttaggttaacacagtgg 61906881
Query: 915 ttgtgctcctgtctgtgtggaatggagaccttcggctgtggtctgtagatcacagagggt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61906882 ttgtgctcctgtctgtgtggaatggagaccttcggctgtggtctgtagatcacagagggt 61906941
Query: 975 gttcttagtctgtctcaaaactgtgtgtgtttacctgctatctctagacattattttcaa 1034
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61906942 gttcttagtctgtctcagaactgtgtgtgtttacctgctatttctagacattattttcag 61907001
Query: 1035 aaggttttttcttccagggtaagagtgggccctttggcttatagataagctagaaataat 1094
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61907002 aaggttttttcttccatggtaagagtgggccctttggcttatagataagctagaaataat 61907061
Query: 1095 tgtttattttacattaatatatacgtcatgatgaaactttctaatcttagta-tcacatc 1153
||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 61907062 tgtttattttacattaatatatacgtcatgatgaaacttcttaatctaggtattcacatc 61907121
Query: 1154 gtagggcgttaaaaaccaa 1172
||||| ||||||||||||
Sbjct: 61907122 gtaggcagttaaaaaccaa 61907140
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Plus
Query: 115 tcagacaccccgtggcatcatttttccatttattctttcgagtcagtgcaattatagtct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61899383 tcagacaccccgtggcatcatttttccatttattctttcgagtcagtgcaattatagtct 61899442
Query: 175 atctgctctgtgaattgttcagcagcagctttattgcctgtatggtgacaattatcttat 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61899443 atctgctctgtgaattgttcagcagcagctttattgcctgtatggtgacaattatcttat 61899502
Query: 235 tgttgtcatgtgacttttgggcagtcaag 263
|||||||||||||||||||||||||||||
Sbjct: 61899503 tgttgtcatgtgacttttgggcagtcaag 61899531
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Plus
Query: 352 aggcttcccctcaagagacgaggactgtttcggaggccgagtccaggatcttctggttag 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61903396 aggcttcccctcaagagacgaggactgtttcggaggccgagtccaggatcttctggttag 61903455
Query: 412 gactcgttgcctgtccggtgctgtgggtgatcttcgccttcagcgccctcttctccttca 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61903456 gactcgttgcctgtccggtgctgtgggtgatcttcgccttcagcgccctcttctccttca 61903515
Query: 472 gagtgaagtggttgg 486
|||||||||||||||
Sbjct: 61903516 gagtgaagtggttgg 61903530
Score = 258 bits (130), Expect = 6e-66
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 485 ggcggtggtcatcatgggtgtggtgctgcaaggtgccaacctgtatggctacatcaggtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61905646 ggcggtggtcatcatgggtgtggtgctgcaaggtgccaacctgtatggctacatcaggtg 61905705
Query: 545 caaagtgggcagcaggaagaatttaaccagcatggccacgtcctaccttgggaagcagtt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61905706 caaagtgggcagcaggaagaatttaaccagcatggccacgtcctaccttgggaagcagtt 61905765
Query: 605 tctaagacaa 614
||||||||||
Sbjct: 61905766 tctaagacaa 61905775
Score = 184 bits (93), Expect = 7e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 262 agaacgtcacaggtaggctgatggttggcctgcgctggtggaaccacattgatgaagatg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61901595 agaacgtcacaggtaggctgatggttggcctgcgctggtggaaccacattgatgaagatg 61901654
Query: 322 gaaaaagccattgggtgtttgagtccaggaagg 354
|||||||||||||||||||||||||||||||||
Sbjct: 61901655 gaaaaagccattgggtgtttgagtccaggaagg 61901687
Score = 168 bits (85), Expect = 4e-39
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 34 aggacagtaatgatgacaccgaagatgtttccctgtttgatgcggaagaggagacaacta 93
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61898154 aggacagtaatgatgacaccgaagatgtttccctgtttgatgcggaagaggagacaacta 61898213
Query: 94 acagaccgaaaaaacccaaaatcag 118
|||||||||||||||||||||||||
Sbjct: 61898214 acagaccgaaaaaacccaaaatcag 61898238
Score = 71.9 bits (36), Expect = 8e-10
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1 aagtgggctggcgcggggccgccatgttgcagcagg 36
||||||||||||||||||||||||||||||||||||
Sbjct: 61895965 aagtgggctggcgcggggccgccatgttgcagcagg 61896000
>Sscrofa_Chr15
|| Length = 157681621
Score = 111 bits (56), Expect = 9e-22
Identities = 56/56 (100%)
Strand = Plus / Plus
Query: 21 gccatgttgcagcaggacagtaatgatgacaccgaagatgtttccctgtttgatgc 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92263554 gccatgttgcagcaggacagtaatgatgacaccgaagatgtttccctgtttgatgc 92263609
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,919,034
Number of extensions: 251
Number of successful extensions: 251
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 9
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)