Animal-Genome cDNA 20110601C-008551

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_002689654.1| PREDICTED: karyopherin beta 3-like [Bos taur...  1241   0.0  
Alignment   gi|XP_605078.4| PREDICTED: karyopherin beta 3-like isoform 1 [B...  1241   0.0  
Alignment   gi|NP_001077130.1| importin-4 [Bos taurus].                          129   1e-29
Alignment   gi|NP_001192432.1| transportin-2 [Bos taurus].                        58   4e-08
Alignment   gi|XP_002688808.1| PREDICTED: transportin 2 [Bos taurus].             58   4e-08
Alignment   gi|NP_001070008.1| transportin-1 [Bos taurus].                        55   3e-07

>ref|XP_002689654.1| PREDICTED: karyopherin beta 3-like [Bos taurus].
          Length = 1274

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 598/738 (81%), Positives = 678/738 (91%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPM KEHIMQMLQ+PDWKYRHAGLMALSAIGEGCHQQME IL+E VN VLLFL
Sbjct: 526  GLGGKLVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFL 585

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 586  QDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 645

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLL+ YLD+++++LHSI+V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 646  FIEDCPKSLLVLYLDSMLRNLHSILVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 705

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKH VE AVQKEL+LL+GKTIECIS +GLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 706  PYYDIFMPSLKHTVELAVQKELKLLKGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQ 765

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILG +FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 766  SDLNNMEDDDPQTSYMVSAWARMCKILGSDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 825

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGF++YTEQVVKLMV
Sbjct: 826  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFMDYTEQVVKLMV 885

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAES+P LLECAR+RGPEYL QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 886  PLLKFYFHDNVRVAAAESLPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE 945

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELG ILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 946  IMNSFAKSIEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 1005

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC +RPWPDRQWGLCIF
Sbjct: 1006 QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSNRPWPDRQWGLCIF 1065

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 1066 DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 1125

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISAVGKI++FKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 1126 PLLVKVIKCANSKTKKNVIATENCISAVGKILRFKPNCVNVDEVLPHWLSWLPLHEDKEE 1185

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT ++LCDLIESNHP+VLGPNN+NLPKI SIIAEG+++E I +EDPCAKRLANVVRQV
Sbjct: 1186 AIQTLSFLCDLIESNHPVVLGPNNSNLPKIISIIAEGKINETINYEDPCAKRLANVVRQV 1245

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  CI+ L  EQ
Sbjct: 1246 QTSEELWLECISHLDDEQ 1263


>ref|XP_605078.4| PREDICTED: karyopherin beta 3-like isoform 1 [Bos taurus].
          Length = 1274

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 598/738 (81%), Positives = 678/738 (91%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPM KEHIMQMLQ+PDWKYRHAGLMALSAIGEGCHQQME IL+E VN VLLFL
Sbjct: 526  GLGGKLVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFL 585

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 586  QDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 645

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLL+ YLD+++++LHSI+V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 646  FIEDCPKSLLVLYLDSMLRNLHSILVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 705

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKH VE AVQKEL+LL+GKTIECIS +GLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 706  PYYDIFMPSLKHTVELAVQKELKLLKGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQ 765

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILG +FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 766  SDLNNMEDDDPQTSYMVSAWARMCKILGSDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 825

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGF++YTEQVVKLMV
Sbjct: 826  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFMDYTEQVVKLMV 885

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAES+P LLECAR+RGPEYL QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 886  PLLKFYFHDNVRVAAAESLPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE 945

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELG ILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 946  IMNSFAKSIEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 1005

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC +RPWPDRQWGLCIF
Sbjct: 1006 QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSNRPWPDRQWGLCIF 1065

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 1066 DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 1125

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISAVGKI++FKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 1126 PLLVKVIKCANSKTKKNVIATENCISAVGKILRFKPNCVNVDEVLPHWLSWLPLHEDKEE 1185

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT ++LCDLIESNHP+VLGPNN+NLPKI SIIAEG+++E I +EDPCAKRLANVVRQV
Sbjct: 1186 AIQTLSFLCDLIESNHPVVLGPNNSNLPKIISIIAEGKINETINYEDPCAKRLANVVRQV 1245

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  CI+ L  EQ
Sbjct: 1246 QTSEELWLECISHLDDEQ 1263


>ref|NP_001077130.1| importin-4 [Bos taurus].
          Length = 1081

 Score =  129 bits (324), Expect = 1e-29
 Identities = 169/722 (23%), Positives = 308/722 (42%), Gaps = 33/722 (4%)
 Frame = +2

Query: 17   LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPH 193
            L++PM++E +    Q+P    R AGL+ L+ + +G    + + +L  ++  V   L+DP 
Sbjct: 352  LLMPMLEEALRS--QSP--YQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKSLEDPS 407

Query: 194  PRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMED--QGNQRVQAHAAAALINFT 367
              VR AA  A+GQ + +  P     +   V+  LL  ++    G+    A A  AL NF 
Sbjct: 408  QVVRNAALFALGQFSENLQPHISS-YSGDVMPLLLSYLKSVPPGHTHHLAKACYALENFV 466

Query: 368  EDC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVP 544
            E+  PK  + PYL  L++ +       LQ L    +    E  V+++ ++A  A+   +P
Sbjct: 467  ENLGPK--VQPYLPELMECM-------LQPLRTPSSSRSKELAVSALGAIATAAQASMLP 517

Query: 545  YYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQT 724
            Y+   M  L+  +  +  ++L+ +R +++E + ++  AVG E     A +  QL L    
Sbjct: 518  YFPTIMAHLREFLLTS-HEDLQPVRIQSLETLGVLVRAVG-EPMRPLAEECCQLGL---- 571

Query: 725  DFSDMEDDDPQISYMISAWARMCKILGKEFQQYLP----VVMGPLMKTASIKPEV----- 877
               D  DD        S +A +  ++G     +LP    +++  L  T  I P+      
Sbjct: 572  GLCDQVDDPDLRRCTYSLFAALSGLMGGSLAPHLPQITTLMLLSLRSTEGIVPQYDGSRS 631

Query: 878  -ALLDTQ-----DMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKE 1039
              L D +     + E M +DD  E  +  +   + +  A  +EK   C  L   +     
Sbjct: 632  FLLFDDESSGEEEEELMEEDDEEE--DDSEISGYSVGNAFFDEKEDTCAALGEISVNTSV 689

Query: 1040 GFVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLL--------ECARVRGPEYLTQMW 1195
             F+ Y E V + +  LL+   H  VR AA E++  L          C        L    
Sbjct: 690  AFLPYMETVFEEVFKLLECP-HLNVRKAAHEALGQLCCALHKACQSCPSESNTAALQAAL 748

Query: 1196 HFMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLEEHF 1372
              +  + ++A+  E +  V+  ++ +    +   G   L       EL  +LKA L+   
Sbjct: 749  ARVVPSYLQAVNGERERQVVMAVLEALTAVLRSCGGLALQPPGRLAELCQVLKAVLQR-- 806

Query: 1373 KNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYK-EKVLPWFEQL 1549
                    K   +D DE+ EE  +D+ + D  +L    + + ++ ++   +   P+F   
Sbjct: 807  --------KTACQDADEEDEEDEEDQAEYDAMLLEHAGEAIPALAAAAGGDAFAPFFAGF 858

Query: 1550 LPLIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQA 1729
            LPL++          ++ + +    + ++    AS ++       +L    ++ PEVR  
Sbjct: 859  LPLLLCKTKQGCTVAEKSFAVGTLAESIQGLGAASAQFVSRLFPVLLSASREADPEVRSN 918

Query: 1730 AAYGLGVMAQYGG----DNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIM 1897
            A +GLGV+A++GG    +++       LPLL R         + +    +N   A+ +++
Sbjct: 919  AIFGLGVLAEHGGRPAQEHFPKLLGLLLPLLAR---------ERHDRVHDNICGALARLL 969

Query: 1898 KFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFS 2077
               P      +VL   L  LPL ED EE V T  +L   +  + P  +      L +I+S
Sbjct: 970  IASPTRKPEPQVLAPLLHALPLKEDLEEWV-TMGHLFSFLYQSSPDQVVDVAPELLRIYS 1028

Query: 2078 II 2083
            +I
Sbjct: 1029 LI 1030


>ref|NP_001192432.1| transportin-2 [Bos taurus].
          Length = 897

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP++K+    +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 395 LLPLLKD----LLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451 VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510 TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557 FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L         ++  L     +EC+S +  A+
Sbjct: 562 LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|XP_002688808.1| PREDICTED: transportin 2 [Bos taurus].
          Length = 897

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP++K+    +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 395 LLPLLKD----LLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451 VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510 TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557 FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L         ++  L     +EC+S +  A+
Sbjct: 562 LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_001070008.1| transportin-1 [Bos taurus].
          Length = 890

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 398 ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 453

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 454 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 512

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 513 TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 564

Query: 557 FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 565 LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 597


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 81,670,959
Number of extensions: 2106640
Number of successful extensions: 6865
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6791
Number of HSP's successfully gapped: 6
Length of query: 738
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 628
Effective length of database: 14,041,694
Effective search space: 8818183832
Effective search space used: 8818183832
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_542647.2| PREDICTED: similar to RAN binding protein 5 iso...  1494   0.0  
Alignment   gi|XP_859531.1| PREDICTED: similar to RAN binding protein 5 iso...  1494   0.0  
Alignment   gi|XP_538652.2| PREDICTED: similar to RAN binding protein 6 [Ca...  1137   0.0  
Alignment   gi|XP_537384.2| PREDICTED: similar to importin 4 isoform 1 [Can...   129   9e-30
Alignment   gi|XP_860399.1| PREDICTED: similar to importin 4 isoform 2 [Can...   127   6e-29
Alignment   gi|XP_867496.1| PREDICTED: similar to transportin 2 (importin 3...    57   1e-07
Alignment   gi|XP_542046.1| PREDICTED: similar to transportin 2 (importin 3...    57   1e-07
Alignment   gi|XP_867477.1| PREDICTED: similar to transportin 2 (importin 3...    57   1e-07
Alignment   gi|XP_535270.2| PREDICTED: similar to transportin 1 [Canis fami...    55   4e-07

>ref|XP_542647.2| PREDICTED: similar to RAN binding protein 5 isoform 1 [Canis
            familiaris].
          Length = 1097

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 734/738 (99%), Positives = 736/738 (99%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL
Sbjct: 349  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 408

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN
Sbjct: 409  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 468

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV
Sbjct: 469  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 528

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ
Sbjct: 529  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 588

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM
Sbjct: 589  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 648

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV
Sbjct: 649  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 708

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
Sbjct: 709  PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 768

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL
Sbjct: 769  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 828

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF
Sbjct: 829  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 888

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DDV+EHCSPASFKYAEYFLRPMLQYVCD+SPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL
Sbjct: 889  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 948

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE
Sbjct: 949  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1008

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV
Sbjct: 1009 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1068

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTSGGLWT CIAQLSPEQ
Sbjct: 1069 QTSGGLWTECIAQLSPEQ 1086


>ref|XP_859531.1| PREDICTED: similar to RAN binding protein 5 isoform 2 [Canis
            familiaris].
          Length = 1070

 Score = 1494 bits (3867), Expect = 0.0
 Identities = 734/738 (99%), Positives = 736/738 (99%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL
Sbjct: 322  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 381

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN
Sbjct: 382  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 441

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV
Sbjct: 442  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 501

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ
Sbjct: 502  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 561

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM
Sbjct: 562  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 621

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV
Sbjct: 622  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 681

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
Sbjct: 682  PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 741

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL
Sbjct: 742  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 801

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF
Sbjct: 802  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 861

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DDV+EHCSPASFKYAEYFLRPMLQYVCD+SPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL
Sbjct: 862  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 921

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE
Sbjct: 922  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 981

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV
Sbjct: 982  AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1041

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTSGGLWT CIAQLSPEQ
Sbjct: 1042 QTSGGLWTECIAQLSPEQ 1059


>ref|XP_538652.2| PREDICTED: similar to RAN binding protein 6 [Canis familiaris].
          Length = 693

 Score = 1137 bits (2941), Expect = 0.0
 Identities = 547/678 (80%), Positives = 623/678 (91%)
 Frame = +2

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 5    QDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 64

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPK+LL+ YLD++V++LHSI+V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 65   FIEDCPKALLVLYLDSMVRNLHSILVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 124

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKHIVE A+QKEL+LL+GKTIECIS +GLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 125  PYYDIFMPSLKHIVELAIQKELKLLKGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQ 184

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILG +FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 185  SDLNNMEDDDPQTSYMVSAWARMCKILGSDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 244

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL EGFVEYTEQVVKLMV
Sbjct: 245  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELGEGFVEYTEQVVKLMV 304

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAESMP LLECAR+RGPEYL QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 305  PLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE 364

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            +M+SFAK IEVMGDGCLN+EH EELG ILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 365  VMNSFAKSIEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 424

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC  RPWPDRQWGLCIF
Sbjct: 425  QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIF 484

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 485  DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 544

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISAVGKI++FKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 545  PLLVKVIKCANSKTKKNVIATENCISAVGKILRFKPNCVNVDEVLPHWLSWLPLHEDKEE 604

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+Q+ ++LCDLIESNHP+VLGPNN+NLPKI SIIAEG+++E I +EDPCAKRLANVVRQV
Sbjct: 605  AIQSLSFLCDLIESNHPVVLGPNNSNLPKIISIIAEGKVNETINYEDPCAKRLANVVRQV 664

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  CI+QL  EQ
Sbjct: 665  QTSEELWLECISQLDDEQ 682


>ref|XP_537384.2| PREDICTED: similar to importin 4 isoform 1 [Canis familiaris].
          Length = 1079

 Score =  129 bits (325), Expect = 9e-30
 Identities = 168/717 (23%), Positives = 310/717 (43%), Gaps = 28/717 (3%)
 Frame = +2

Query: 17   LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPH 193
            L++PM++E     L++     R AGL+ L+ + +G    + + +L  ++  V   L+DP 
Sbjct: 352  LLMPMLEE----ALRSERPYQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKGLEDPS 407

Query: 194  PRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMED--QGNQRVQAHAAAALINFT 367
              VR AA  A+GQ + +  P     +   V+  LL  ++    G+    A A  AL NF 
Sbjct: 408  QVVRNAALFALGQFSENLQPHISS-YSGDVMPLLLAYLKSVPPGHTNHLAKACYALENFV 466

Query: 368  EDC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVP 544
            E+  PK  + PYL  L++ +       LQ L    +    E  V+++ ++A  A+   +P
Sbjct: 467  ENLGPK--VQPYLPELMECM-------LQPLRNPSSPRAKELAVSALGAIATAAQASLLP 517

Query: 545  YYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQT 724
            Y+   M  L+  +  A   +L+ ++ +++E + ++  AVG E     A +  QL L    
Sbjct: 518  YFPTIMEHLREFLL-AGHGDLQPVQIQSLETLGVLARAVG-EPMRPLAEECCQLGL---- 571

Query: 725  DFSDMEDDDPQISYMISAWARMCKILGKEFQQYLP----VVMGPLMKTASIKPEVA---- 880
               D  DD        S +A +  ++G+    +LP    +++  L  T  I P+      
Sbjct: 572  GLCDQVDDPDLRRCTYSLFAALSGLMGEGLAPHLPQITTLMLLSLRSTEGIVPQYDGSRS 631

Query: 881  -LL-----DTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEG 1042
             LL     D ++ E + D D  E  +  +   + ++ A  +EK  AC  L   +      
Sbjct: 632  FLLFDDESDGEEEEELMDKDEEEEED-SEISGYSVENAFFDEKEDACAALGEISVNTSVS 690

Query: 1043 FVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLL--------ECARVRGPEYLTQMWH 1198
            F+ Y E V + +  LL+   H  VR AA E++             C        L     
Sbjct: 691  FLPYVESVFEEVFKLLECP-HLNVRKAAHEALGQFCCALHKACQSCPSEPNTAALQAALA 749

Query: 1199 FMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLEEHFK 1375
             +  + I+A+  E +  V+  ++ +    +   G   L       EL G+L+A L+    
Sbjct: 750  RVLPSYIQAVSEERERQVVMAVLEALTSVLRGCGPLALQPPGRLAELCGMLRAVLQR--- 806

Query: 1376 NQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYK-EKVLPWFEQLL 1552
                   K   +D DE+ EE  +D+ + D  +L    + + ++ ++   +   P+F   L
Sbjct: 807  -------KTACQDTDEEEEE--EDQAEYDAMLLEHAGEAIPALAAAVGGDTFAPFFASFL 857

Query: 1553 PLIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAA 1732
            PL++          ++ + +    + ++    AS ++    L  +L    ++ PEVR  A
Sbjct: 858  PLLLCKTKQGCTVAEKSFAVGTLAESIQGLGGASAQFVSRLLPVLLSTAREADPEVRSNA 917

Query: 1733 AYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPD 1912
             +GLGV+A++GG   + +  + L LL+ ++       + +    +N   A+ +++   P 
Sbjct: 918  IFGLGVLAEHGGRPAQEYFPKLLGLLLPLL-----ARERHDRVRDNICGALARLLMAGPT 972

Query: 1913 CVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSII 2083
                 +VL   L  LPL ED EE V T  +L   +  + P  +      L +I S+I
Sbjct: 973  RKPEPQVLAALLHALPLKEDLEEWV-TIGHLFSFLYQSSPDQVVDVAPELLRICSLI 1028


>ref|XP_860399.1| PREDICTED: similar to importin 4 isoform 2 [Canis familiaris].
          Length = 1083

 Score =  127 bits (318), Expect = 6e-29
 Identities = 173/721 (23%), Positives = 310/721 (42%), Gaps = 32/721 (4%)
 Frame = +2

Query: 17   LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPH 193
            L++PM++E     L++     R AGL+ L+ + +G    + + +L  ++  V   L+DP 
Sbjct: 352  LLMPMLEE----ALRSERPYQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKGLEDPS 407

Query: 194  PRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMED--QGNQRVQAHAAAALINFT 367
              VR AA  A+GQ + +  P     +   V+  LL  ++    G+    A A  AL NF 
Sbjct: 408  QVVRNAALFALGQFSENLQPHI-SSYSGDVMPLLLAYLKSVPPGHTNHLAKACYALENFV 466

Query: 368  EDC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVP 544
            E+  PK  + PYL  L       M   LQ L    +    E  V+++ ++A  A+   +P
Sbjct: 467  ENLGPK--VQPYLPEL-------MECMLQPLRNPSSPRAKELAVSALGAIATAAQASLLP 517

Query: 545  YYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQT 724
            Y+   M  L+  +  A   +L+ ++ +++E + ++  AVG E     A +  QL L    
Sbjct: 518  YFPTIMEHLREFL-LAGHGDLQPVQIQSLETLGVLARAVG-EPMRPLAEECCQLGL---- 571

Query: 725  DFSDMEDDDPQISYMISAWARMCKILGKEFQQYLP----VVMGPLMKTASIKPEV----- 877
               D  DD        S +A +  ++G+    +LP    +++  L  T  I P+      
Sbjct: 572  GLCDQVDDPDLRRCTYSLFAALSGLMGEGLAPHLPQITTLMLLSLRSTEGIVPQYDGSRS 631

Query: 878  ALL-----DTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEG 1042
             LL     D ++ E + D D  E  +  +   + ++ A  +EK  AC  L   +      
Sbjct: 632  FLLFDDESDGEEEEELMDKDEEEEED-SEISGYSVENAFFDEKEDACAALGEISVNTSVS 690

Query: 1043 FVEYTEQVVKLMVPLLKFYFHDGVRVAAAESM-----PLLLECARVRGPEYLTQMWHFMC 1207
            F+ Y E V + +  LL+   H  VR AA E++      L   C           M   + 
Sbjct: 691  FLPYVESVFEEVFKLLECP-HLNVRKAAHEALGQFCCALHKACQSCPSEPNTPIMSPALQ 749

Query: 1208 DAL-------IKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLE 1363
             AL       I+A+  E +  V+  ++ +    +   G   L       EL G+L+A L 
Sbjct: 750  AALARVLPSYIQAVSEERERQVVMAVLEALTSVLRGCGPLALQPPGRLAELCGMLRAVL- 808

Query: 1364 EHFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSY-KEKVLPWF 1540
                     Q K   +D DE+ EE  +D+ + D  +L    + + ++ ++   +   P+F
Sbjct: 809  ---------QRKTACQDTDEEEEE--EDQAEYDAMLLEHAGEAIPALAAAVGGDTFAPFF 857

Query: 1541 EQLLPLIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEV 1720
               LPL++          ++ + +    + ++    AS ++    L  +L    ++ PEV
Sbjct: 858  ASFLPLLLCKTKQGCTVAEKSFAVGTLAESIQGLGGASAQFVSRLLPVLLSTAREADPEV 917

Query: 1721 RQAAAYGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMK 1900
            R  A +GLGV+A++GG   + +  + L LL+ ++       + +    +N   A+ +++ 
Sbjct: 918  RSNAIFGLGVLAEHGGRPAQEYFPKLLGLLLPLL-----ARERHDRVRDNICGALARLLM 972

Query: 1901 FKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSI 2080
              P      +VL   L  LPL ED EE V T  +L   +  + P  +      L +I S+
Sbjct: 973  AGPTRKPEPQVLAALLHALPLKEDLEEWV-TIGHLFSFLYQSSPDQVVDVAPELLRICSL 1031

Query: 2081 I 2083
            I
Sbjct: 1032 I 1032


>ref|XP_867496.1| PREDICTED: similar to transportin 2 (importin 3, karyopherin beta 2b)
            isoform 4 [Canis familiaris].
          Length = 887

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|XP_542046.1| PREDICTED: similar to transportin 2 (importin 3, karyopherin beta 2b)
            isoform 1 [Canis familiaris].
          Length = 887

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|XP_867477.1| PREDICTED: similar to transportin 2 (importin 3, karyopherin beta
           2b) isoform 3 [Canis familiaris].
          Length = 765

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 269 LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 328

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 329 VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 387

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 388 TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 439

Query: 557 FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L         ++  L     +EC+S +  A+
Sbjct: 440 LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 472


>ref|XP_535270.2| PREDICTED: similar to transportin 1 [Canis familiaris].
          Length = 925

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 433  ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 488

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 489  VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 547

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 548  TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 599

Query: 557  FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 600  LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 632


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 85,055,660
Number of extensions: 2161372
Number of successful extensions: 7306
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 7148
Number of HSP's successfully gapped: 9
Length of query: 738
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 628
Effective length of database: 15,207,544
Effective search space: 9550337632
Effective search space used: 9550337632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_001926818.2| PREDICTED: importin-5 [Sus scrofa].              1495   0.0  
Alignment   gi|XP_003121961.1| PREDICTED: ran-binding protein 6-like [Sus s...  1240   0.0  
Alignment   gi|XP_001925868.2| PREDICTED: importin-4 [Sus scrofa].               126   4e-29
Alignment   gi|XP_003123364.2| PREDICTED: transportin-2 [Sus scrofa].             57   6e-08

>ref|XP_001926818.2| PREDICTED: importin-5 [Sus scrofa].
          Length = 1188

 Score = 1495 bits (3871), Expect = 0.0
 Identities = 736/738 (99%), Positives = 736/738 (99%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL
Sbjct: 440  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 499

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN
Sbjct: 500  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 559

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV
Sbjct: 560  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 619

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ
Sbjct: 620  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 679

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM
Sbjct: 680  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 739

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV
Sbjct: 740  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 799

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
Sbjct: 800  PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 859

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL
Sbjct: 860  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 919

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF
Sbjct: 920  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 979

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL
Sbjct: 980  DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1039

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE
Sbjct: 1040 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1099

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV
Sbjct: 1100 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1159

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTSGGLWT CIAQLSPEQ
Sbjct: 1160 QTSGGLWTECIAQLSPEQ 1177


>ref|XP_003121961.1| PREDICTED: ran-binding protein 6-like [Sus scrofa].
          Length = 1105

 Score = 1240 bits (3209), Expect = 0.0
 Identities = 600/738 (81%), Positives = 679/738 (92%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPM KEHIMQMLQ+PDWKYRHAGLMALSAIGEGCHQQME IL+E VN VLLFL
Sbjct: 357  GLGGKLVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFL 416

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 417  QDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 476

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLL+ YLD++V++LHSI+V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 477  FIEDCPKSLLVLYLDSMVRNLHSILVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 536

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKHIVE AVQKEL+LL+GKTIECIS +GLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 537  PYYDIFMPSLKHIVELAVQKELKLLKGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQ 596

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYMI AWARMCKILG +FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 597  SDLNNMEDDDPQTSYMIPAWARMCKILGNDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 656

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGFV YTEQVVKLMV
Sbjct: 657  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVGYTEQVVKLMV 716

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAESMP LLECAR+RGPEYL+QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 717  PLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLSQMWQFICDPLIKAIGTEPDTDVLSE 776

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELG ILKAKLE HFKNQELRQVKR++E+YD+QVE SL
Sbjct: 777  IMNSFAKSIEVMGDGCLNDEHLEELGEILKAKLEGHFKNQELRQVKRREENYDQQVEMSL 836

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC +RPWPDRQWGLCIF
Sbjct: 837  QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSNRPWPDRQWGLCIF 896

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY E+F  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 897  DDIIEHCSPTSFKYVEHFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 956

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISAVGKI++FKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 957  PLLVKVIKCANSKTKKNVIATENCISAVGKILRFKPNCVNVDEVLPHWLSWLPLHEDKEE 1016

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT ++LCDLIESNHP+VLGPNN+NLPKI SIIAEG+++E I +E+PCAKRLANVVRQV
Sbjct: 1017 AIQTLSFLCDLIESNHPVVLGPNNSNLPKIISIIAEGKINETINYEEPCAKRLANVVRQV 1076

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  CI+QL  EQ
Sbjct: 1077 QTSEELWLECISQLDNEQ 1094


>ref|XP_001925868.2| PREDICTED: importin-4 [Sus scrofa].
          Length = 1076

 Score =  126 bits (317), Expect = 4e-29
 Identities = 166/721 (23%), Positives = 307/721 (42%), Gaps = 32/721 (4%)
 Frame = +2

Query: 17   LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPH 193
            L++PM++E +    +NP    R AGL+ L+ + +G    + + +L  ++  V   L+DP 
Sbjct: 352  LLMPMLEEALRS--ENP--YQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKSLEDPS 407

Query: 194  PRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMED--QGNQRVQAHAAAALINFT 367
              VR AA   +GQ + +  P     +  +V+  LL  ++    G+    A A  AL NF 
Sbjct: 408  LVVRNAALFTLGQFSENLQPHISS-YSGEVMPLLLTYLKSVPSGHTHHLAKACYALENFV 466

Query: 368  EDC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVP 544
            E+  PK  + PYL  L++ +       LQ L +  +    E  V+++ ++A  A+   +P
Sbjct: 467  ENLGPK--VQPYLPELMECM-------LQPLRKPSSPRAKELAVSALGAIATAAQASVLP 517

Query: 545  YYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQT 724
            Y+   M  L+  +     ++L+ +R +++E + ++  AVG E     A +  QL L    
Sbjct: 518  YFPTIMEQLREFLLTG-HEDLQPVRIQSLETLGVLVRAVG-EPMRPLAEECCQLGL---- 571

Query: 725  DFSDMEDDDPQISYMISAWARMCKILGKEFQQYLP----VVMGPLMKTASIKPEV----A 880
               D  DD        S +A +  ++G+    +LP    +++  L     I P+     A
Sbjct: 572  GLCDQVDDPDLRRCTYSLFAALSGLMGESLAPHLPQITTLMLSSLRSAEGIVPQYDGNSA 631

Query: 881  LL------DTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEG 1042
             L      D ++ E + D+D  E   +     + ++ A  +EK   C  L   +      
Sbjct: 632  FLLFDDESDGEEEEELMDEDEEEDSEIS---GYSVENAFFDEKEDTCAALGEISVNASVA 688

Query: 1043 FVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLL--------ECARVRGPEYLTQMWH 1198
            F+ Y E V + +  LL+   H  VR AA E++             C        L     
Sbjct: 689  FLPYMETVFEEVFKLLECP-HLNVRKAAHEALGQFCCALHKACQSCPSEPNAAALQAALA 747

Query: 1199 FMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLEEHFK 1375
             +  + ++A+  E +  V+  ++ +    +   G+  L       EL  +LKA L+    
Sbjct: 748  RVVPSYMQAVNGEQERQVVMAVLEALTAVLRGCGNLALQPPGRLAELCHMLKAVLQR--- 804

Query: 1376 NQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYK-EKVLPWFEQLL 1552
                   K   +D DE+ EE   D+ + D  +L    + + ++ ++   +   P+F   L
Sbjct: 805  -------KTACQDADEEEEE---DQAEYDAMLLEHAGEAIPALAAAAGGDAFAPFFAGFL 854

Query: 1553 PLIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAA 1732
            PL++          ++ + +    + ++    AS ++       +L    ++ PEVR  A
Sbjct: 855  PLLLCKTKQGCTVAEKSFAVGTLAESIQGLGAASAQFVSRLFPALLSTARETDPEVRSNA 914

Query: 1733 AYGLGVMAQYGG----DNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMK 1900
             +GLGV+A++GG    +++       LPLL R         + +    +N   A+ +++ 
Sbjct: 915  IFGLGVLAEHGGRPAQEHFPKLLGLLLPLLAR---------ERHDRVHDNICGALARLLM 965

Query: 1901 FKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSI 2080
              P      +VL   L  LPL ED EE V T  +L   +  + P  +      L +I S+
Sbjct: 966  ASPTRKPEPQVLAALLHALPLKEDLEEWV-TIGHLFSFLHQSSPDQVVDVAPELLRICSL 1024

Query: 2081 I 2083
            I
Sbjct: 1025 I 1025


>ref|XP_003123364.2| PREDICTED: transportin-2 [Sus scrofa].
          Length = 897

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 52,389,617
Number of extensions: 1339741
Number of successful extensions: 4207
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4143
Number of HSP's successfully gapped: 4
Length of query: 738
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 632
Effective length of database: 8,704,850
Effective search space: 5501465200
Effective search space used: 5501465200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_076068.1| importin-5 [Mus musculus].                          1476   0.0  
Alignment   gi|NP_808389.2| ran-binding protein 6 [Mus musculus].               1239   0.0  
Alignment   gi|NP_077229.4| importin-4 [Mus musculus].                           131   2e-30
Alignment   gi|NP_001116315.1| transportin-2 [Mus musculus].                      57   8e-08
Alignment   gi|NP_663365.3| transportin-2 [Mus musculus].                         57   8e-08
Alignment   gi|NP_001041732.1| transportin-1 isoform 2 [Mus musculus].            55   3e-07
Alignment   gi|NP_848831.2| transportin-1 isoform 1 [Mus musculus].               55   3e-07

>ref|NP_076068.1| importin-5 [Mus musculus].
          Length = 1097

 Score = 1476 bits (3821), Expect = 0.0
 Identities = 723/738 (97%), Positives = 733/738 (99%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL
Sbjct: 349  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 408

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN
Sbjct: 409  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 468

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV
Sbjct: 469  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 528

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ
Sbjct: 529  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 588

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            TDF+DMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM
Sbjct: 589  TDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 648

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV
Sbjct: 649  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 708

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
Sbjct: 709  PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 768

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL
Sbjct: 769  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 828

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICP RPWPDRQWGLCIF
Sbjct: 829  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPQRPWPDRQWGLCIF 888

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD+VEHCSPASFKYAEYF+ PMLQYVCD+SPEVRQAAAYGLGVMAQ+GGDNYRPFCT+AL
Sbjct: 889  DDIVEHCSPASFKYAEYFISPMLQYVCDNSPEVRQAAAYGLGVMAQFGGDNYRPFCTDAL 948

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLVRVIQ+ ++KTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE
Sbjct: 949  PLLVRVIQAPEAKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1008

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            AVQTF+YLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV
Sbjct: 1009 AVQTFSYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1068

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTSGGLWT CIAQLSPEQ
Sbjct: 1069 QTSGGLWTECIAQLSPEQ 1086


>ref|NP_808389.2| ran-binding protein 6 [Mus musculus].
          Length = 1105

 Score = 1239 bits (3207), Expect = 0.0
 Identities = 596/738 (80%), Positives = 675/738 (91%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG +VLPM KEHIMQMLQ+PDWK RHAGLMALSAIGEGCHQQME IL+E VN VLLFL
Sbjct: 357  GLGGKVVLPMTKEHIMQMLQSPDWKCRHAGLMALSAIGEGCHQQMEPILDETVNSVLLFL 416

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VI ALL+TME+QGNQRVQ+HAA+AL+ 
Sbjct: 417  QDPHPRVRAAACTTLGQMATDFAPSFQKKFHEIVITALLRTMENQGNQRVQSHAASALVI 476

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLLI YL+N+VK LHSI+V+KLQELI+ GTKL LEQ+VT+IASVAD  EE F+
Sbjct: 477  FIEDCPKSLLILYLENMVKSLHSILVIKLQELIRNGTKLALEQLVTTIASVADAIEESFI 536

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKH+VE AVQKEL+LLRGKTIECIS +GLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 537  PYYDIFMPSLKHVVELAVQKELKLLRGKTIECISHVGLAVGKEKFMQDASNVMQLLLKTQ 596

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILGK+F+QYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 597  SDLNNMEDDDPQTSYMVSAWARMCKILGKDFEQYLPLVIEPLIKTASAKPDVALLDTQDV 656

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGFVEYTEQVVK+MV
Sbjct: 657  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVEYTEQVVKMMV 716

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAE+MP LLECAR+RG EYL+QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 717  PLLKFYFHDNVRVAAAEAMPFLLECARIRGSEYLSQMWQFICDPLIKAIGTEPDTDVLSE 776

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELGGILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 777  IMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 836

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC  RPWPDRQWGLCIF
Sbjct: 837  QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIF 896

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 897  DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 956

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISA+GKI+KFKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 957  PLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEE 1016

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT N+LCDLIESNHP+V+GPNN+NLPKI SIIAEG+++E I HEDPCAKRLANVVRQ+
Sbjct: 1017 AIQTLNFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKINETISHEDPCAKRLANVVRQI 1076

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  C +QL  EQ
Sbjct: 1077 QTSEELWLECTSQLDDEQ 1094


>ref|NP_077229.4| importin-4 [Mus musculus].
          Length = 1082

 Score =  131 bits (330), Expect = 2e-30
 Identities = 166/724 (22%), Positives = 308/724 (42%), Gaps = 36/724 (4%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPHP 196
            V+PM++E     L++ D   R AG + L+ + +G    + + +L  ++  V   L DP  
Sbjct: 353  VMPMLEE----ALRSEDPYQRKAGFLVLAVLSDGAGDHIRQRLLYPLLQIVCKGLDDPSQ 408

Query: 197  RVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMED--QGNQRVQAHAAAALINFTE 370
             VR AA  A+GQ + +  P     + E+V+  LL  ++    GN    A A  AL NF E
Sbjct: 409  IVRNAALFALGQFSENLQPHISS-YSEEVMPLLLSYLKSVPMGNTHHLAKACYALENFVE 467

Query: 371  DC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPY 547
            +  PK  + PYL  L++ +       LQ L         E  V++I ++A  A++  +PY
Sbjct: 468  NLGPK--VQPYLPELMECM-------LQPLKNPSKARTKELAVSAIGAIATAAQDSLLPY 518

Query: 548  YDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTD 727
            +   M  L+  +     ++  L++ +++E + ++  A+G E     A +  QL L     
Sbjct: 519  FPTIMDLLREFLLTG-HEDFHLVQIQSLETLGVLARALG-ESMKPLAEECCQLGLGLCIH 576

Query: 728  FSDMEDDDPQISYMI-SAWARMCKILGKEFQQYLP----VVMGPLMKTASIKPEVALL-- 886
                  DDP +     S +A +  ++G+    YLP    +++  L  T  I P+   +  
Sbjct: 577  I-----DDPDVRRCTYSLFAALSGLMGEGLGPYLPQITTLMLLSLRSTEGIVPQYDGISS 631

Query: 887  --------DTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEG 1042
                    + ++ E + D+D  E  +  +   + ++ A  +EK   C  L   +      
Sbjct: 632  FLLFDDDSEAEEEEELMDEDMEEEGDDSEISGYSVENAFFDEKEDTCTALGEISMNTCVA 691

Query: 1043 FVEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLLECARVRG-----------PEYLTQ 1189
            F+ + +     +  LL+   H  VR +A E++     CA  +            P   T 
Sbjct: 692  FLPFMDATFDEVYKLLECP-HMNVRKSAYEALGQFC-CALHKASQRSSSDPSSSPVLQTS 749

Query: 1190 MWHFMCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLEE 1366
            +   M  A ++A+  E +  V+  ++ S    +   G   L       EL  +LKA L++
Sbjct: 750  LARVM-PAYMQAVKVERERPVVMAVLESLTGVLRTCGSLALQPPGRLSELCNVLKAVLQK 808

Query: 1367 HFKNQELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYKEKVL-PWFE 1543
                Q+  +    D+D D+       D+ + D  +L    + +  + ++       P+F 
Sbjct: 809  KTACQDAEE----DDDEDD-------DQAEYDAMLLEHAGEAIPVLAATAGGHAFAPFFA 857

Query: 1544 QLLPLIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVR 1723
              LPL++          ++ + +    + ++    AS ++       +L    ++ PEVR
Sbjct: 858  TFLPLLLCKTKQSCTVAEKSFAVGTLAESIQGLGTASAQFVSRLFPVLLNNAREADPEVR 917

Query: 1724 QAAAYGLGVMAQYGG----DNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGK 1891
              A +GLGV+A++GG    D++       LPLL R         + +    +N   A+ +
Sbjct: 918  SNAIFGLGVLAEHGGCPAQDHFPKLLGLLLPLLAR---------ERHDRVRDNICGALAR 968

Query: 1892 IMKFKPDCVNVEEVLPHWLSWLPLHEDKEEAVQTFNYLCDLIESNHPIVLGPNNTNLPKI 2071
            ++   P      +VL   L  LPL ED EE + T  +L   +  N+P  +    + L +I
Sbjct: 969  VLMASPVGKTEPQVLATLLRALPLKEDMEEWL-TIGHLFSFLHQNNPEQVVDVASELLRI 1027

Query: 2072 FSII 2083
             S+I
Sbjct: 1028 CSLI 1031


>ref|NP_001116315.1| transportin-2 [Mus musculus].
          Length = 897

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_663365.3| transportin-2 [Mus musculus].
          Length = 897

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_001041732.1| transportin-1 isoform 2 [Mus musculus].
          Length = 890

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 398 ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 453

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 454 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 512

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 513 TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 564

Query: 557 FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 565 LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 597


>ref|NP_848831.2| transportin-1 isoform 1 [Mus musculus].
          Length = 898

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 406  ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 461

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 462  VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 520

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 521  TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 572

Query: 557  FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 573  LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 605


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 71,945,307
Number of extensions: 1852577
Number of successful extensions: 5992
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5891
Number of HSP's successfully gapped: 7
Length of query: 738
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 629
Effective length of database: 12,343,635
Effective search space: 7764146415
Effective search space used: 7764146415
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002262.3| importin-5 [Homo sapiens].                          1493   0.0  
Alignment   gi|NP_036548.1| ran-binding protein 6 isoform 1 [Homo sapiens].     1254   0.0  
Alignment   gi|NP_001230131.1| ran-binding protein 6 isoform 2 [Homo sapien...  1147   0.0  
Alignment   gi|NP_078934.3| importin-4 [Homo sapiens].                           126   1e-28
Alignment   gi|NP_001129667.1| transportin-2 isoform 3 [Homo sapiens].            57   9e-08
Alignment   gi|NP_038461.2| transportin-2 isoform 2 [Homo sapiens].               57   9e-08
Alignment   gi|NP_001129668.1| transportin-2 isoform 1 [Homo sapiens].            57   9e-08
Alignment   gi|NP_694858.1| transportin-1 isoform 2 [Homo sapiens].               55   4e-07
Alignment   gi|NP_002261.3| transportin-1 isoform 1 [Homo sapiens].               55   4e-07

>ref|NP_002262.3| importin-5 [Homo sapiens].
          Length = 1115

 Score = 1493 bits (3864), Expect = 0.0
 Identities = 733/738 (99%), Positives = 736/738 (99%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG LVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL
Sbjct: 367  GLGGKLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 426

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN
Sbjct: 427  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 486

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV
Sbjct: 487  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 546

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ
Sbjct: 547  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 606

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            TDF+DMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM
Sbjct: 607  TDFNDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 666

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV
Sbjct: 667  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 726

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE
Sbjct: 727  PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 786

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL
Sbjct: 787  IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 846

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF
Sbjct: 847  QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 906

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DDV+EHCSPASFKYAEYFLRPMLQYVCD+SPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL
Sbjct: 907  DDVIEHCSPASFKYAEYFLRPMLQYVCDNSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 966

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE
Sbjct: 967  PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1026

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV
Sbjct: 1027 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 1086

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTSGGLWT CIAQLSPEQ
Sbjct: 1087 QTSGGLWTECIAQLSPEQ 1104


>ref|NP_036548.1| ran-binding protein 6 isoform 1 [Homo sapiens].
          Length = 1105

 Score = 1254 bits (3244), Expect = 0.0
 Identities = 604/738 (81%), Positives = 681/738 (92%)
 Frame = +2

Query: 2    GLGGNLVLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFL 181
            GLGG +VLPM KEHIMQMLQ+PDWKYRHAGLMALSAIGEGCHQQME IL+E VN VLLFL
Sbjct: 357  GLGGKVVLPMTKEHIMQMLQSPDWKYRHAGLMALSAIGEGCHQQMESILDETVNSVLLFL 416

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            QDPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 417  QDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 476

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLL+ Y+D++VK+LHS++V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 477  FIEDCPKSLLVLYVDSMVKNLHSVLVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 536

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKHIVE AVQKEL+LLRGKTIECIS IGLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 537  PYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHIGLAVGKEKFMQDASNVMQLLLKTQ 596

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILGK+FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 597  SDLNNMEDDDPQTSYMVSAWARMCKILGKDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 656

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGFVEYTEQVVKLMV
Sbjct: 657  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVEYTEQVVKLMV 716

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAESMP LLECAR+RGPEYL QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 717  PLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE 776

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELGGILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 777  IMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 836

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC  RPWPDRQWGLCIF
Sbjct: 837  QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIF 896

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 897  DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 956

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISA+GKI+KFKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 957  PLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEE 1016

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT ++LCDLIESNHP+V+GPNN+NLPKI SIIAEG+++E I +EDPCAKRLANVVRQV
Sbjct: 1017 AIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKINETINYEDPCAKRLANVVRQV 1076

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  C++QL  EQ
Sbjct: 1077 QTSEDLWLECVSQLDDEQ 1094


>ref|NP_001230131.1| ran-binding protein 6 isoform 2 [Homo sapiens].
          Length = 753

 Score = 1147 bits (2967), Expect = 0.0
 Identities = 551/678 (81%), Positives = 626/678 (92%)
 Frame = +2

Query: 182  QDPHPRVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALIN 361
            +DPHPRVR AAC  +GQMATDFAP FQKKFHE VIAALL+TME+QGNQRVQ+HAA+ALI 
Sbjct: 65   EDPHPRVRAAACTTLGQMATDFAPNFQKKFHETVIAALLRTMENQGNQRVQSHAASALII 124

Query: 362  FTEDCPKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFV 541
            F EDCPKSLL+ Y+D++VK+LHS++V+KLQELI+ GTKL LEQ+VT+IASVADT EEKFV
Sbjct: 125  FIEDCPKSLLVLYVDSMVKNLHSVLVIKLQELIRNGTKLALEQLVTTIASVADTIEEKFV 184

Query: 542  PYYDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQ 721
            PYYD+FMPSLKHIVE AVQKEL+LLRGKTIECIS IGLAVGKEKFMQDAS+VMQLLLKTQ
Sbjct: 185  PYYDIFMPSLKHIVELAVQKELKLLRGKTIECISHIGLAVGKEKFMQDASNVMQLLLKTQ 244

Query: 722  TDFSDMEDDDPQISYMISAWARMCKILGKEFQQYLPVVMGPLMKTASIKPEVALLDTQDM 901
            +D ++MEDDDPQ SYM+SAWARMCKILGK+FQQYLP+V+ PL+KTAS KP+VALLDTQD+
Sbjct: 245  SDLNNMEDDDPQTSYMVSAWARMCKILGKDFQQYLPLVIEPLIKTASAKPDVALLDTQDV 304

Query: 902  ENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGFVEYTEQVVKLMV 1081
            ENMSDDDGW+FVNLGDQQSFGIKT+GLE K+TACQMLV YAKEL+EGFVEYTEQVVKLMV
Sbjct: 305  ENMSDDDGWQFVNLGDQQSFGIKTSGLEAKATACQMLVYYAKELREGFVEYTEQVVKLMV 364

Query: 1082 PLLKFYFHDGVRVAAAESMPLLLECARVRGPEYLTQMWHFMCDALIKAIGTEPDSDVLSE 1261
            PLLKFYFHD VRVAAAESMP LLECAR+RGPEYL QMW F+CD LIKAIGTEPD+DVLSE
Sbjct: 365  PLLKFYFHDNVRVAAAESMPFLLECARIRGPEYLAQMWQFICDPLIKAIGTEPDTDVLSE 424

Query: 1262 IMHSFAKCIEVMGDGCLNNEHFEELGGILKAKLEEHFKNQELRQVKRQDEDYDEQVEESL 1441
            IM+SFAK IEVMGDGCLN+EH EELGGILKAKLE HFKNQELRQVKRQ+E+YD+QVE SL
Sbjct: 425  IMNSFAKSIEVMGDGCLNDEHLEELGGILKAKLEGHFKNQELRQVKRQEENYDQQVEMSL 484

Query: 1442 QDEDDNDVYILTKVSDILHSIFSSYKEKVLPWFEQLLPLIVNLICPHRPWPDRQWGLCIF 1621
            QDED+ DVYILTKVSDILHS+FS+YKEK+LPWFEQLLPLIVNLIC  RPWPDRQWGLCIF
Sbjct: 485  QDEDECDVYILTKVSDILHSLFSTYKEKILPWFEQLLPLIVNLICSSRPWPDRQWGLCIF 544

Query: 1622 DDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAAYGLGVMAQYGGDNYRPFCTEAL 1801
            DD++EHCSP SFKY EYF  PML  + D++PEVRQAAAYGLGVMAQ+GGD+YR  C+EA+
Sbjct: 545  DDIIEHCSPTSFKYVEYFRWPMLLNMRDNNPEVRQAAAYGLGVMAQFGGDDYRSLCSEAV 604

Query: 1802 PLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDCVNVEEVLPHWLSWLPLHEDKEE 1981
            PLLV+VI+ A+SKTK+NV ATENCISA+GKI+KFKP+CVNV+EVLPHWLSWLPLHEDKEE
Sbjct: 605  PLLVKVIKCANSKTKKNVIATENCISAIGKILKFKPNCVNVDEVLPHWLSWLPLHEDKEE 664

Query: 1982 AVQTFNYLCDLIESNHPIVLGPNNTNLPKIFSIIAEGEMHEAIKHEDPCAKRLANVVRQV 2161
            A+QT ++LCDLIESNHP+V+GPNN+NLPKI SIIAEG+++E I +EDPCAKRLANVVRQV
Sbjct: 665  AIQTLSFLCDLIESNHPVVIGPNNSNLPKIISIIAEGKINETINYEDPCAKRLANVVRQV 724

Query: 2162 QTSGGLWTGCIAQLSPEQ 2215
            QTS  LW  C++QL  EQ
Sbjct: 725  QTSEDLWLECVSQLDDEQ 742


>ref|NP_078934.3| importin-4 [Homo sapiens].
          Length = 1081

 Score =  126 bits (316), Expect = 1e-28
 Identities = 156/684 (22%), Positives = 294/684 (42%), Gaps = 28/684 (4%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQM-EGILNEIVNFVLLFLQDPHP 196
            ++PM++E     L++     R AGL+ L+ + +G    + + +L  ++  V   L+DP  
Sbjct: 353  LMPMLEE----ALRSESPYQRKAGLLVLAVLSDGAGDHIRQRLLPPLLQIVCKGLEDPSQ 408

Query: 197  RVRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQ--GNQRVQAHAAAALINFTE 370
             VR AA  A+GQ + +  P     +  +V+  LL  ++    G+    A A  AL NF E
Sbjct: 409  VVRNAALFALGQFSENLQPHISS-YSREVMPLLLAYLKSVPLGHTHHLAKACYALENFVE 467

Query: 371  DC-PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPY 547
            +  PK  + PYL  L++ +       LQ L    +    E  V+++ ++A  A+   +PY
Sbjct: 468  NLGPK--VQPYLPELMECM-------LQLLRNPSSPRAKELAVSALGAIATAAQASLLPY 518

Query: 548  YDLFMPSLKHIVENAVQKELRLLRGKTIECISLIGLAVGKEKFMQDASDVMQLLLKTQTD 727
            +   M  L+  +    +++L+ ++ +++E + ++  AVG E     A +  QL L     
Sbjct: 519  FPAIMEHLREFLLTG-REDLQPVQIQSLETLGVLARAVG-EPMRPLAEECCQLGL----G 572

Query: 728  FSDMEDDDPQISYMISAWARMCKILGK----EFQQYLPVVMGPLMKTASIKPEVA----- 880
              D  DD        S +A +  ++G+      +Q   +++  L  T  I P+       
Sbjct: 573  LCDQVDDPDLRRCTYSLFAALSGLMGEGLAPHLEQITTLMLLSLRSTEGIVPQYDGSSSF 632

Query: 881  LL-----DTQDMENMSDDDGWEFVNLGDQQSFGIKTAGLEEKSTACQMLVCYAKELKEGF 1045
            LL     D ++ E + D+D  E  +  +   + ++ A  +EK   C  +   +      F
Sbjct: 633  LLFDDESDGEEEEELMDEDVEEEDD-SEISGYSVENAFFDEKEDTCAAVGEISVNTSVAF 691

Query: 1046 VEYTEQVVKLMVPLLKFYFHDGVRVAAAESMPLLL--------ECARVRGPEYLTQMWHF 1201
            + Y E V + +  LL+   H  VR AA E++             C        L      
Sbjct: 692  LPYMESVFEEVFKLLECP-HLNVRKAAHEALGQFCCALHKACQSCPSEPNTAALQAALAR 750

Query: 1202 MCDALIKAIGTEPDSDVLSEIMHSFAKCIEVMGDGCLNNE-HFEELGGILKAKLEEHFKN 1378
            +  + ++A+  E +  V+  ++ +    +   G   L       EL G+LKA L+     
Sbjct: 751  VVPSYMQAVNRERERQVVMAVLEALTGVLRSCGTLTLKPPGRLAELCGVLKAVLQR---- 806

Query: 1379 QELRQVKRQDEDYDEQVEESLQDEDDNDVYILTKVSDILHSIFSSYK-EKVLPWFEQLLP 1555
                  K   +D DE+ EE   D+ + D  +L    + + ++ ++   +   P+F   LP
Sbjct: 807  ------KTACQDTDEEEEEEDDDQAEYDAMLLEHAGEAIPALAAAAGGDSFAPFFAGFLP 860

Query: 1556 LIVNLICPHRPWPDRQWGLCIFDDVVEHCSPASFKYAEYFLRPMLQYVCDSSPEVRQAAA 1735
            L+V          ++ + +    + ++    AS ++    L  +L    ++ PEVR  A 
Sbjct: 861  LLVCKTKQGCTVAEKSFAVGTLAETIQGLGAASAQFVSRLLPVLLSTAQEADPEVRSNAI 920

Query: 1736 YGLGVMAQYGGDNYRPFCTEALPLLVRVIQSADSKTKENVNATENCISAVGKIMKFKPDC 1915
            +G+GV+A++GG   +    + L LL  ++       + +    +N   A+ +++   P  
Sbjct: 921  FGMGVLAEHGGHPAQEHFPKLLGLLFPLL-----ARERHDRVRDNICGALARLLMASPTR 975

Query: 1916 VNVEEVLPHWLSWLPLHEDKEEAV 1987
                +VL   L  LPL ED EE V
Sbjct: 976  KPEPQVLAALLHALPLKEDLEEWV 999


>ref|NP_001129667.1| transportin-2 isoform 3 [Homo sapiens].
          Length = 887

 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_038461.2| transportin-2 isoform 2 [Homo sapiens].
          Length = 887

 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_001129668.1| transportin-2 isoform 1 [Homo sapiens].
          Length = 897

 Score = 56.6 bits (135), Expect = 9e-08
 Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 1/215 (0%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP +   +  +L +P+W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 391  LLPHLLPLLKGLLFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCLSDKKAL 450

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR  AC  + + A            + ++  LL+ + D GN+RVQ  A +A     E+ C
Sbjct: 451  VRSIACWTLSRYAHWVVSQPPDMHLKPLMTELLKRILD-GNKRVQEAACSAFATLEEEAC 509

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y   
Sbjct: 510  TE--LVPYL----SYILDTLVFAFGKYQHKNLLILYDAIGTLADSVGHHLNQP--EYIQK 561

Query: 557  FMPSLKHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L         ++  L     +EC+S +  A+
Sbjct: 562  LMPPLIQKWNELKDEDKDLF--PLLECLSSVATAL 594


>ref|NP_694858.1| transportin-1 isoform 2 [Homo sapiens].
          Length = 890

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20  VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
           +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 398 ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 453

Query: 200 VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
           VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 454 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 512

Query: 377 PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
            +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 513 TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 564

Query: 557 FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
            MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 565 LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 597


>ref|NP_002261.3| transportin-1 isoform 1 [Homo sapiens].
          Length = 898

 Score = 54.7 bits (130), Expect = 4e-07
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 3/217 (1%)
 Frame = +2

Query: 20   VLPMIKEHIMQMLQNPDWKYRHAGLMALSAIGEGCHQQMEGILNEIVNFVLLFLQDPHPR 199
            +LP++KE    +L + +W  + +G++ L AI EGC Q M   L E++  ++  L D    
Sbjct: 406  ILPLLKE----LLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL 461

Query: 200  VRYAACNAVGQMATDFAPGFQKKFHEKVIAALLQTMEDQGNQRVQAHAAAALINFTED-C 376
            VR   C  + + A          + + ++  LL+ + D  N+RVQ  A +A     E+ C
Sbjct: 462  VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEAC 520

Query: 377  PKSLLIPYLDNLVKHLHSIMVLKLQELIQKGTKLVLEQVVTSIASVADTAEEKFVPYYDL 556
             +  L+PYL     ++   +V    +   K   ++ + + T   SV     +    Y  +
Sbjct: 521  TE--LVPYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKP--EYIQM 572

Query: 557  FMPSL--KHIVENAVQKELRLLRGKTIECISLIGLAV 661
             MP L  K  +     K+L  L    +EC+S +  A+
Sbjct: 573  LMPPLIQKWNMLKDEDKDLFPL----LECLSSVATAL 605


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 84,017,727
Number of extensions: 2167440
Number of successful extensions: 6966
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 6877
Number of HSP's successfully gapped: 9
Length of query: 738
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 628
Effective length of database: 14,671,124
Effective search space: 9213465872
Effective search space used: 9213465872
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008551
         (2215 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr01                                                        1092   0.0  
Sscrofa_Chr11                                                         458   e-126

>Sscrofa_Chr01 
||          Length = 315321322

 Score = 1092 bits (551), Expect = 0.0
 Identities = 1763/2167 (81%)
 Strand = Plus / Plus

                                                                             
Query: 5         ctcggtggaaaccttgtcctgccgatgatcaaggaacacatcatgcagatgcttcagaat 64
                 ||||||||||| |||||  | || ||||  ||||| || |||||||||||||||||||  
Sbjct: 241784095 ctcggtggaaaacttgttttaccaatgactaaggagcatatcatgcagatgcttcagagc 241784154

                                                                             
Query: 65        cctgactggaagtatcgccatgcaggattgatggccttatccgccattggcgagggctgc 124
                 ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || || |||
Sbjct: 241784155 cctgactggaaatatcgacatgctggattaatggccttatctgctattggagaaggatgc 241784214

                                                                             
Query: 125       caccagcaaatggaagggattctgaatgagatagtcaattttgttttgctctttcttcag 184
                 || ||||||||||||   |||||  |||| | ||| || | ||||||||| |||||||||
Sbjct: 241784215 catcagcaaatggaatcaattctagatgaaacagttaactctgttttgctttttcttcag 241784274

                                                                             
Query: 185       gatcctcaccccagagtgaggtatgcagcctgcaatgccgtgggacagatggctacagat 244
                 |||||||| || || ||||||  ||||||||| | | |  | ||||||||||||||||||
Sbjct: 241784275 gatcctcatccaagggtgagggctgcagcctgtactacacttggacagatggctacagat 241784334

                                                                             
Query: 245       tttgcacctggtttccaaaagaaattccacgagaaggtgattgcagcactgctgcagacc 304
                 |||||||||   ||||||||||||||||| |||| ||||||||| || ||| |||  |||
Sbjct: 241784335 tttgcacctaacttccaaaagaaattccatgagacggtgattgctgctctgttgcgtacc 241784394

                                                                             
Query: 305       atggaagaccaaggcaaccagcgggtgcaggcccacgcagccgctgctctcattaacttc 364
                 |||||| | ||||| || ||||| || ||| | || |||||  |||| || ||||  || 
Sbjct: 241784395 atggaaaatcaaggtaatcagcgtgtacagtcacatgcagcttctgcacttattattttt 241784454

                                                                             
Query: 365       actgaggactgtcccaagtcgctacttattccctatttagataatttggtgaaacatctg 424
                 | ||| ||||||||||| ||  | ||| | |  ||||| |||| | |||||| | |||| 
Sbjct: 241784455 attgaagactgtcccaaatcattgcttgtcctatatttggatagtatggtgagaaatcta 241784514

                                                                             
Query: 425       cattccatcatggtgcttaaacttcaagagttgattcagaaaggcaccaaattggttttg 484
                 ||||||||| ||||| |||||||||||||||||||||  || || || || |||| ||||
Sbjct: 241784515 cattccatcttggtgattaaacttcaagagttgattcgcaatggaactaagttggctttg 241784574

                                                                             
Query: 485       gaacaagttgtgacgtctatcgcatcagttgcagatactgcagaagaaaaatttgtcccc 544
                 |||||  |||||||  | || || ||||||||||||||   ||||||||||||||| || 
Sbjct: 241784575 gaacagcttgtgacaaccattgcctcagttgcagatacaatagaagaaaaatttgttcca 241784634

                                                                             
Query: 545       tactatgacttatttatgccgtcactgaagcacattgttgagaatgcagttcaaaaggaa 604
                 || |||||  |||||||||| ||||||||||| |||||||||  ||| ||||||||||||
Sbjct: 241784635 tattatgatatatttatgccctcactgaagcatattgttgagcttgctgttcaaaaggaa 241784694

                                                                             
Query: 605       ctccggcttctcagagggaaaactattgaatgcatcagcctcattggtctggctgttggg 664
                 |||  |||||| | ||| ||||||||||||||||| ||||   ||||||| |||||||||
Sbjct: 241784695 ctcaagcttctgaaaggaaaaactattgaatgcattagccatgttggtcttgctgttggg 241784754

                                                                             
Query: 665       aaggagaaattcatgcaagatgcatcagatgtgatgcagctcctactgaagacccagacg 724
                 ||||| ||||| ||||||||||||||| |||||||||| ||  |  ||||||| ||  | 
Sbjct: 241784755 aaggaaaaatttatgcaagatgcatcaaatgtgatgcaactattgttgaagacacaatca 241784814

                                                                             
Query: 725       gacttcagtgacatggaagacgacgaccctcagatctcttatatgatctcagcatgggcc 784
                 ||||| | | | |||||||| || |||||||||| |||||| |||||  | |||||||| 
Sbjct: 241784815 gacttaaataatatggaagatgatgaccctcagacctcttacatgattcccgcatgggct 241784874

                                                                             
Query: 785       agaatgtgcaaaatccttggaaaggaatttcagcagtaccttccagtggtcatggggcct 844
                 |||||||| ||||| |||||||| || ||||| |||||||||||| | || || | ||||
Sbjct: 241784875 agaatgtgtaaaattcttggaaatgattttcaacagtaccttccactagttattgagcct 241784934

                                                                             
Query: 845       ttaatgaagacagcttcaattaagcctgaagtagcccttttagatacccaagacatggaa 904
                  | || ||||| ||||||  ||| ||||| || || || ||||| || |||||  |||| 
Sbjct: 241784935 cttattaagactgcttcagctaaacctgatgttgctctcttagacacacaagatgtggag 241784994

                                                                             
Query: 905       aacatgagtgatgatgatggttgggaatttgtgaaccttggagatcagcagagttttggt 964
                 || ||||||||||||||||| ||| ||||||| || |||||||| ||||| |||||||| 
Sbjct: 241784995 aatatgagtgatgatgatggatggcaatttgtaaatcttggagaccagcaaagttttgga 241785054

                                                                             
Query: 965       attaaaactgcaggacttgaagaaaagtcaactgcttgccagatgctggtttgctatgct 1024
                 ||||||||| |||| ||||||| |||  ||||||||||||||||| ||||||  ||||||
Sbjct: 241785055 attaaaacttcagggcttgaagcaaaagcaactgcttgccagatgttggtttattatgct 241785114

                                                                             
Query: 1025      aaggagttaaaagaaggctttgtggagtacactgaacaggttgtcaaactcatggtccct 1084
                 ||||||||||  ||||| |||||||  || || ||||| ||||| ||||| ||||| |||
Sbjct: 241785115 aaggagttaagggaaggatttgtgggatatacagaacaagttgtaaaactgatggttcct 241785174

                                                                             
Query: 1085      ctactgaaattttatttccacgatggtgttcgagtggcagccgcagaatccatgcctctt 1144
                  ||||||||||||||||||| ||    |||||||||||||| ||||| ||||||||| ||
Sbjct: 241785175 ttactgaaattttatttccatgacaacgttcgagtggcagcagcagagtccatgcctttt 241785234

                                                                             
Query: 1145      ctcctggaatgtgcaagagtccgtggtcctgagtatctcacacagatgtggcatttcatg 1204
                 || |||||||||||| || | ||||| || ||||||||  ||||||||||||| ||||| 
Sbjct: 241785235 cttctggaatgtgcacgaattcgtggcccagagtatctttcacagatgtggcagttcata 241785294

                                                                             
Query: 1205      tgtgatgctctaatcaaggccattggcacagaaccagattcagatgtcctctcagaaata 1264
                 |||||| |  |||||||||| ||||| || ||||| ||| ||||||| ||||||||||||
Sbjct: 241785295 tgtgatcccttaatcaaggctattgggactgaacctgatacagatgtactctcagaaata 241785354

                                                                             
Query: 1265      atgcattcctttgcaaagtgcattgaagtcatgggagacggttgccttaataatgaacac 1324
                 ||| |||| |||||||||| ||||||||| |||||||| || ||||||||| ||||||||
Sbjct: 241785355 atgaattcttttgcaaagtccattgaagtaatgggagatgggtgccttaatgatgaacac 241785414

                                                                             
Query: 1325      tttgaagagttgggaggtatattgaaagctaaactagaagaacatttcaaaaatcaagaa 1384
                 || |||||| ||||||  ||| | ||||| ||||| ||||  || || ||||| ||||||
Sbjct: 241785415 ttggaagagctgggagaaatactaaaagcgaaacttgaagggcactttaaaaaccaagaa 241785474

                                                                             
Query: 1385      ttgcggcaagttaaaagacaagatgaagactatgatgaacaggtggaagaatcactacaa 1444
                 ||| | || ||||||||||  || ||| |||| ||  |||| || |||   || || |||
Sbjct: 241785475 ttgagacaggttaaaagacgggaagaaaactacgaccaacaagttgaaatgtctctgcaa 241785534

                                                                             
Query: 1445      gatgaggatgataatgatgtttatattctgaccaaagtgtcagacattttacactcaata 1504
                 |||||||||||   |||||||||||||||||||||||| ||||| ||||| |||||| ||
Sbjct: 241785535 gatgaggatgaatgtgatgtttatattctgaccaaagtatcagatattttgcactcatta 241785594

                                                                             
Query: 1505      ttcagtagctacaaggaaaaagtgttaccatggtttgaacagctgcttccgttaatcgtc 1564
                 || ||||  || || |||||  | |||||||||||||||||||||||||| ||||| || 
Sbjct: 241785595 tttagtacttataaagaaaagattttaccatggtttgaacagctgcttccattaattgta 241785654

                                                                             
Query: 1565      aacctaatttgtccacacagaccatggccagaccgacagtggggattgtgcatcttcgat 1624
                 || ||||||||| |  |||| |||||||||||| ||||||||||||||||||| || |||
Sbjct: 241785655 aatctaatttgttctaacaggccatggccagacagacagtggggattgtgcatatttgat 241785714

                                                                             
Query: 1625      gatgtcgtagaacactgtagtccagcctcgtttaaatacgcagagtatttcttaaggccg 1684
                 ||| || |||||||||| |||||| |||| ||||||||||  ||  ||||     |||| 
Sbjct: 241785715 gatatcatagaacactgcagtccaacctcatttaaatacgtggaacattttcggtggcca 241785774

                                                                             
Query: 1685      atgctgcagtacgtgtgtgacagcagcccagaagtcaggcaggcggctgcgtatggcctc 1744
                 |||||||   |  || | |||| || ||| ||||||||||| || ||||| |||||||| 
Sbjct: 241785775 atgctgctaaatatgcgagacaacaaccctgaagtcaggcaagctgctgcttatggcctg 241785834

                                                                             
Query: 1745      ggcgtcatggcacagtatggcggagacaactaccgtcctttctgcacagaagcccttccg 1804
                 || || ||||| |||| ||| |||||  | || ||| |||| ||  | |||||  |||||
Sbjct: 241785835 ggtgttatggcgcagtttggtggagatgattatcgttctttatgttctgaagctgttccg 241785894

                                                                             
Query: 1805      ctgctggtaagagttattcagtctgctgattctaagaccaaagaaaatgtcaacgctaca 1864
                 |||||||||| ||||||| ||| |||  | || || |||||| |||||||||  ||||||
Sbjct: 241785895 ctgctggtaaaagttattaagtgtgcaaactccaaaaccaaaaaaaatgtcattgctaca 241785954

                                                                             
Query: 1865      gagaactgcatctcggcagtggggaagattatgaagttcaagcctgactgtgtgaacgtg 1924
                 |||||||| ||||| ||||| ||||||||| ||| ||| |||||| ||||||| || || 
Sbjct: 241785955 gagaactgtatctcagcagtagggaagattttgaggtttaagcctaactgtgtaaatgta 241786014

                                                                             
Query: 1925      gaagaagtcctgccacattggctgtcttggcttccactacatgaggataaagaagaagct 1984
                 || ||||| || ||||| ||| | || ||||||||| | |||||||||||||| ||||||
Sbjct: 241786015 gatgaagttcttccacactggttatcatggcttccattgcatgaggataaagaggaagct 241786074

                                                                             
Query: 1985      gttcagactttcaactatttgtgtgacctgattgaaagtaatcacccgattgttcttggc 2044
                  |||||||||| |  | | | |||||| | ||||||||||| |||||| |||| ||||| 
Sbjct: 241786075 attcagactttgagttttctctgtgacttaattgaaagtaaccacccggttgtacttggt 241786134

                                                                             
Query: 2045      ccaaacaataccaatctgcccaaaatattcagcataattgcagaaggagagatgcatgag 2104
                 ||||| ||| | ||||| || |||||| |||| ||||||||||||||  | ||  |||||
Sbjct: 241786135 ccaaataattctaatcttccaaaaataatcagtataattgcagaagggaaaattaatgag 241786194

                                                                             
Query: 2105      gcaattaaacatgaagatccttgtgccaaacgtctggctaatgtagttcgccaggtacag 2164
                  | |||||  ||||||| |||||||||||||| || |||||||| || || |||||||||
Sbjct: 241786195 actattaactatgaagagccttgtgccaaacgcctagctaatgttgtgcgtcaggtacag 241786254

                        
Query: 2165      acgtctg 2171
                 || ||||
Sbjct: 241786255 acttctg 241786261


>Sscrofa_Chr11 
||          Length = 87690581

 Score =  458 bits (231), Expect = e-126
 Identities = 231/231 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1792     agaagcccttccgctgctggtaagagttattcagtctgctgattctaagaccaaagaaaa 1851
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170644 agaagcccttccgctgctggtaagagttattcagtctgctgattctaagaccaaagaaaa 74170703

                                                                            
Query: 1852     tgtcaacgctacagagaactgcatctcggcagtggggaagattatgaagttcaagcctga 1911
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170704 tgtcaacgctacagagaactgcatctcggcagtggggaagattatgaagttcaagcctga 74170763

                                                                            
Query: 1912     ctgtgtgaacgtggaagaagtcctgccacattggctgtcttggcttccactacatgagga 1971
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170764 ctgtgtgaacgtggaagaagtcctgccacattggctgtcttggcttccactacatgagga 74170823

                                                                   
Query: 1972     taaagaagaagctgttcagactttcaactatttgtgtgacctgattgaaag 2022
                |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170824 taaagaagaagctgttcagactttcaactatttgtgtgacctgattgaaag 74170874



 Score =  438 bits (221), Expect = e-120
 Identities = 221/221 (100%)
 Strand = Plus / Plus

                                                                            
Query: 453      agttgattcagaaaggcaccaaattggttttggaacaagttgtgacgtctatcgcatcag 512
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74158561 agttgattcagaaaggcaccaaattggttttggaacaagttgtgacgtctatcgcatcag 74158620

                                                                            
Query: 513      ttgcagatactgcagaagaaaaatttgtcccctactatgacttatttatgccgtcactga 572
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74158621 ttgcagatactgcagaagaaaaatttgtcccctactatgacttatttatgccgtcactga 74158680

                                                                            
Query: 573      agcacattgttgagaatgcagttcaaaaggaactccggcttctcagagggaaaactattg 632
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74158681 agcacattgttgagaatgcagttcaaaaggaactccggcttctcagagggaaaactattg 74158740

                                                         
Query: 633      aatgcatcagcctcattggtctggctgttgggaaggagaaa 673
                |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74158741 aatgcatcagcctcattggtctggctgttgggaaggagaaa 74158781



 Score =  436 bits (220), Expect = e-119
 Identities = 220/220 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1574     tgtccacacagaccatggccagaccgacagtggggattgtgcatcttcgatgatgtcgta 1633
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74169883 tgtccacacagaccatggccagaccgacagtggggattgtgcatcttcgatgatgtcgta 74169942

                                                                            
Query: 1634     gaacactgtagtccagcctcgtttaaatacgcagagtatttcttaaggccgatgctgcag 1693
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74169943 gaacactgtagtccagcctcgtttaaatacgcagagtatttcttaaggccgatgctgcag 74170002

                                                                            
Query: 1694     tacgtgtgtgacagcagcccagaagtcaggcaggcggctgcgtatggcctcggcgtcatg 1753
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170003 tacgtgtgtgacagcagcccagaagtcaggcaggcggctgcgtatggcctcggcgtcatg 74170062

                                                        
Query: 1754     gcacagtatggcggagacaactaccgtcctttctgcacag 1793
                ||||||||||||||||||||||||||||||||||||||||
Sbjct: 74170063 gcacagtatggcggagacaactaccgtcctttctgcacag 74170102



 Score =  349 bits (176), Expect = 4e-93
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                            
Query: 279      aggtgattgcagcactgctgcagaccatggaagaccaaggcaaccagcgggtgcaggccc 338
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155839 aggtgattgcagcactgctgcagaccatggaagaccaaggcaaccagcgggtgcaggccc 74155898

                                                                            
Query: 339      acgcagccgctgctctcattaacttcactgaggactgtcccaagtcgctacttattccct 398
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155899 acgcagccgctgctctcattaacttcactgaggactgtcccaagtcgctacttattccct 74155958

                                                                        
Query: 399      atttagataatttggtgaaacatctgcattccatcatggtgcttaaacttcaagag 454
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155959 atttagataatttggtgaaacatctgcattccatcatggtgcttaaacttcaagag 74156014



 Score =  343 bits (173), Expect = 3e-91
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1110     gtgttcgagtggcagccgcagaatccatgcctcttctcctggaatgtgcaagagtccgtg 1169
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74165245 gtgttcgagtggcagccgcagaatccatgcctcttctcctggaatgtgcaagagtccgtg 74165304

                                                                            
Query: 1170     gtcctgagtatctcacacagatgtggcatttcatgtgtgatgctctaatcaaggccattg 1229
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74165305 gtcctgagtatctcacacagatgtggcatttcatgtgtgatgctctaatcaaggccattg 74165364

                                                                     
Query: 1230     gcacagaaccagattcagatgtcctctcagaaataatgcattcctttgcaaag 1282
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74165365 gcacagaaccagattcagatgtcctctcagaaataatgcattcctttgcaaag 74165417



 Score =  285 bits (144), Expect = 5e-74
 Identities = 144/144 (100%)
 Strand = Plus / Plus

                                                                            
Query: 2021     agtaatcacccgattgttcttggcccaaacaataccaatctgcccaaaatattcagcata 2080
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74172355 agtaatcacccgattgttcttggcccaaacaataccaatctgcccaaaatattcagcata 74172414

                                                                            
Query: 2081     attgcagaaggagagatgcatgaggcaattaaacatgaagatccttgtgccaaacgtctg 2140
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74172415 attgcagaaggagagatgcatgaggcaattaaacatgaagatccttgtgccaaacgtctg 74172474

                                        
Query: 2141     gctaatgtagttcgccaggtacag 2164
                ||||||||||||||||||||||||
Sbjct: 74172475 gctaatgtagttcgccaggtacag 74172498



 Score =  270 bits (136), Expect = 3e-69
 Identities = 136/136 (100%)
 Strand = Plus / Plus

                                                                            
Query: 755      cagatctcttatatgatctcagcatgggccagaatgtgcaaaatccttggaaaggaattt 814
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74160996 cagatctcttatatgatctcagcatgggccagaatgtgcaaaatccttggaaaggaattt 74161055

                                                                            
Query: 815      cagcagtaccttccagtggtcatggggcctttaatgaagacagcttcaattaagcctgaa 874
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74161056 cagcagtaccttccagtggtcatggggcctttaatgaagacagcttcaattaagcctgaa 74161115

                                
Query: 875      gtagcccttttagata 890
                ||||||||||||||||
Sbjct: 74161116 gtagcccttttagata 74161131



 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                            
Query: 66       ctgactggaagtatcgccatgcaggattgatggccttatccgccattggcgagggctgcc 125
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155439 ctgactggaagtatcgccatgcaggattgatggccttatccgccattggcgagggctgcc 74155498

                                                                            
Query: 126      accagcaaatggaagggattctgaatgagatagtcaattttgttttgctctttcttcagg 185
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155499 accagcaaatggaagggattctgaatgagatagtcaattttgttttgctctttcttcagg 74155558

                     
Query: 186      atcct 190
                |||||
Sbjct: 74155559 atcct 74155563



 Score =  248 bits (125), Expect = 1e-62
 Identities = 125/125 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1449     aggatgataatgatgtttatattctgaccaaagtgtcagacattttacactcaatattca 1508
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74168161 aggatgataatgatgtttatattctgaccaaagtgtcagacattttacactcaatattca 74168220

                                                                            
Query: 1509     gtagctacaaggaaaaagtgttaccatggtttgaacagctgcttccgttaatcgtcaacc 1568
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74168221 gtagctacaaggaaaaagtgttaccatggtttgaacagctgcttccgttaatcgtcaacc 74168280

                     
Query: 1569     taatt 1573
                |||||
Sbjct: 74168281 taatt 74168285



 Score =  246 bits (124), Expect = 4e-62
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                            
Query: 891      cccaagacatggaaaacatgagtgatgatgatggttgggaatttgtgaaccttggagatc 950
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74161221 cccaagacatggaaaacatgagtgatgatgatggttgggaatttgtgaaccttggagatc 74161280

                                                                            
Query: 951      agcagagttttggtattaaaactgcaggacttgaagaaaagtcaactgcttgccagatgc 1010
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74161281 agcagagttttggtattaaaactgcaggacttgaagaaaagtcaactgcttgccagatgc 74161340

                    
Query: 1011     tggt 1014
                ||||
Sbjct: 74161341 tggt 74161344



 Score =  226 bits (114), Expect = 4e-56
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1281     agtgcattgaagtcatgggagacggttgccttaataatgaacactttgaagagttgggag 1340
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74166295 agtgcattgaagtcatgggagacggttgccttaataatgaacactttgaagagttgggag 74166354

                                                                      
Query: 1341     gtatattgaaagctaaactagaagaacatttcaaaaatcaagaattgcggcaag 1394
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74166355 gtatattgaaagctaaactagaagaacatttcaaaaatcaagaattgcggcaag 74166408



 Score =  194 bits (98), Expect = 1e-46
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1012     ggtttgctatgctaaggagttaaaagaaggctttgtggagtacactgaacaggttgtcaa 1071
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74163636 ggtttgctatgctaaggagttaaaagaaggctttgtggagtacactgaacaggttgtcaa 74163695

                                                      
Query: 1072     actcatggtccctctactgaaattttatttccacgatg 1109
                ||||||||||||||||||||||||||||||||||||||
Sbjct: 74163696 actcatggtccctctactgaaattttatttccacgatg 74163733



 Score =  182 bits (92), Expect = 5e-43
 Identities = 92/92 (100%)
 Strand = Plus / Plus

                                                                            
Query: 191      caccccagagtgaggtatgcagcctgcaatgccgtgggacagatggctacagattttgca 250
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74155661 caccccagagtgaggtatgcagcctgcaatgccgtgggacagatggctacagattttgca 74155720

                                                
Query: 251      cctggtttccaaaagaaattccacgagaaggt 282
                ||||||||||||||||||||||||||||||||
Sbjct: 74155721 cctggtttccaaaagaaattccacgagaaggt 74155752



 Score =  167 bits (84), Expect = 3e-38
 Identities = 84/84 (100%)
 Strand = Plus / Plus

                                                                            
Query: 674      ttcatgcaagatgcatcagatgtgatgcagctcctactgaagacccagacggacttcagt 733
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74159840 ttcatgcaagatgcatcagatgtgatgcagctcctactgaagacccagacggacttcagt 74159899

                                        
Query: 734      gacatggaagacgacgaccctcag 757
                ||||||||||||||||||||||||
Sbjct: 74159900 gacatggaagacgacgaccctcag 74159923



 Score =  121 bits (61), Expect = 2e-24
 Identities = 64/65 (98%)
 Strand = Plus / Plus

                                                                            
Query: 1        tggactcggtggaaaccttgtcctgccgatgatcaaggaacacatcatgcagatgcttca 60
                ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74152120 tggactcggtggaaagcttgtcctgccgatgatcaaggaacacatcatgcagatgcttca 74152179

                     
Query: 61       gaatc 65
                |||||
Sbjct: 74152180 gaatc 74152184



 Score =  117 bits (59), Expect = 3e-23
 Identities = 59/59 (100%)
 Strand = Plus / Plus

                                                                           
Query: 1393     agttaaaagacaagatgaagactatgatgaacaggtggaagaatcactacaagatgagg 1451
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74166494 agttaaaagacaagatgaagactatgatgaacaggtggaagaatcactacaagatgagg 74166552



 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 53/54 (98%)
 Strand = Plus / Plus

                                                                      
Query: 2162     cagacgtctggaggcctgtggactggatgcatagcacagctcagccctgagcag 2215
                ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 74173147 cagacgtctggaggcctgtggactgaatgcatagcacagctcagccctgagcag 74173200


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 69,467,290
Number of extensions: 627
Number of successful extensions: 627
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 22
Length of query: 2215
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2193
Effective length of database: 2,808,408,574
Effective search space: 6158840002782
Effective search space used: 6158840002782
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)