Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015564.1| WD repeat-containing protein 46 [Bos taurus]. 489 e-138
>ref|NP_001015564.1| WD repeat-containing protein 46 [Bos taurus].
Length = 605
Score = 489 bits (1258), Expect = e-138
Identities = 251/326 (76%), Positives = 269/326 (82%)
Frame = +3
Query: 81 METAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXXXXXXXXXRKQKKNREARPQKPK 260
MET P+PGS+VPPKKDRLQ K+KKPRRYWE+E RK+K+NRE RPQKPK
Sbjct: 1 METVPEPGSNVPPKKDRLQTKKKKPRRYWEQETTGTAAGASPGPPRKRKRNRELRPQKPK 60
Query: 261 NAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSK 440
KK R KKP+ E +SP PQRSLSGAQDPFAGPAPV VEVV+K+ RIDKSK
Sbjct: 61 KNDTSKKFRISKKPR------ELKSPRPQRSLSGAQDPFAGPAPVSVEVVQKYCRIDKSK 114
Query: 441 KLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEA 620
+LP K+K +SRL AEA+EEE SV+AARSELLL EEPGFLEGEDGEDTA+IRQADI EA
Sbjct: 115 ELPHPKTKTRSRLVVAEAQEEETSVRAARSELLLTEEPGFLEGEDGEDTAKIRQADIVEA 174
Query: 621 VDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMCEINVMEAV 800
VDIASAAKHFDLNLRQFGPYRLNYS VAALDWVTKKLMCEINVMEAV
Sbjct: 175 VDIASAAKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAV 234
Query: 801 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFL 980
RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDR+TRLEFLPFHFLLATASETGFL
Sbjct: 235 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRVTRLEFLPFHFLLATASETGFL 294
Query: 981 TYLDVSVGKIVAALNARAGRLDVMTR 1058
TYLDVSVGKIVAALNARAGRL VMT+
Sbjct: 295 TYLDVSVGKIVAALNARAGRLSVMTQ 320
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,889,750
Number of extensions: 1233799
Number of successful extensions: 8131
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7954
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538859.2| PREDICTED: similar to WD-repeat protein BING4 [... 502 e-142
>ref|XP_538859.2| PREDICTED: similar to WD-repeat protein BING4 [Canis familiaris].
Length = 599
Score = 502 bits (1293), Expect = e-142
Identities = 253/326 (77%), Positives = 272/326 (83%)
Frame = +3
Query: 81 METAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXXXXXXXXXRKQKKNREARPQKPK 260
META KPG DV PKK RLQ K+KKPRRYWE+E R +K+NRE RPQ+PK
Sbjct: 1 METASKPGRDVQPKKARLQTKKKKPRRYWEKEATLTAAGASPGPPRNKKRNRELRPQRPK 60
Query: 261 NAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSK 440
N + KKSR P KPQ PKK +E R+ PQR+LSGAQDPF GPAP+P EV RKFRRIDKSK
Sbjct: 61 NINLPKKSRIPGKPQFPKKPREQRNLEPQRNLSGAQDPFPGPAPIPEEVARKFRRIDKSK 120
Query: 441 KLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEA 620
KLP SKSK +SRL+ AEAEEEEIS+KAARSELLLAEEPGFLEGEDGEDTA+I QA+I EA
Sbjct: 121 KLPHSKSKTRSRLEVAEAEEEEISIKAARSELLLAEEPGFLEGEDGEDTAKICQAEIVEA 180
Query: 621 VDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMCEINVMEAV 800
VDIASAAKHFDLNLRQFGPYRLNYS VA LDWVTK+LMCEINVMEAV
Sbjct: 181 VDIASAAKHFDLNLRQFGPYRLNYSPVGRHLAFGGHRGHVATLDWVTKRLMCEINVMEAV 240
Query: 801 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFL 980
RDIRFLHSEAL AVAQNRWLHIYDNQGIELHC+RRCDR+TRLEFLPFHFLLATASETGFL
Sbjct: 241 RDIRFLHSEALFAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFL 300
Query: 981 TYLDVSVGKIVAALNARAGRLDVMTR 1058
TYLDVSVGKIVAALNARAGRLDVMT+
Sbjct: 301 TYLDVSVGKIVAALNARAGRLDVMTK 326
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,812,662
Number of extensions: 1282432
Number of successful extensions: 8083
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7945
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927648.3| PREDICTED: WD repeat-containing protein 46 i... 630 0.0
Alignment gi|XP_003128388.1| PREDICTED: WD repeat-containing protein 46 i... 459 e-129
>ref|XP_001927648.3| PREDICTED: WD repeat-containing protein 46 isoform 1 [Sus scrofa].
Length = 642
Score = 630 bits (1624), Expect = 0.0
Identities = 320/348 (91%), Positives = 321/348 (92%)
Frame = +3
Query: 15 VFNPTVGQLRGVCTCVAVRVGLMETAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXX 194
VFNPTVGQLRGVCTCVAVRVGLMETAPKPGSDVPPKKDRLQAKRKKPRRYWEEE
Sbjct: 9 VFNPTVGQLRGVCTCVAVRVGLMETAPKPGSDVPPKKDRLQAKRKKPRRYWEEETAPTAA 68
Query: 195 XXXXXXXRKQKKNREARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDP 374
RKQKKNREARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDP
Sbjct: 69 GASPGPPRKQKKNREARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDP 128
Query: 375 FAGPAPVPVEVVRKFRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEP 554
FAGPAPVPVEVVRKFRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEP
Sbjct: 129 FAGPAPVPVEVVRKFRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEP 188
Query: 555 GFLEGEDGEDTARIRQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXX 734
GFLEGEDGEDTARIRQADIAEAVDIASAAKHFDLNLRQFGPYRLNYS
Sbjct: 189 GFLEGEDGEDTARIRQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRG 248
Query: 735 XVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDR 914
VAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDR
Sbjct: 249 HVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDR 308
Query: 915 ITRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMTR 1058
ITRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMT+
Sbjct: 309 ITRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMTQ 356
>ref|XP_003128388.1| PREDICTED: WD repeat-containing protein 46 isoform 2 [Sus scrofa].
Length = 557
Score = 459 bits (1181), Expect = e-129
Identities = 241/274 (87%), Positives = 244/274 (89%)
Frame = +3
Query: 237 EARPQKPKNAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRK 416
E P+ + P KK R K KKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRK
Sbjct: 2 ETAPKPGSDVP-PKKDRLQAKR---KKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRK 57
Query: 417 FRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARI 596
FRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARI
Sbjct: 58 FRRIDKSKKLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARI 117
Query: 597 RQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMC 776
RQADIAEAVDIASAAKHFDLNLRQFGPYRLNYS VAALDWVTKKLMC
Sbjct: 118 RQADIAEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMC 177
Query: 777 EINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLA 956
EINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLA
Sbjct: 178 EINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLA 237
Query: 957 TASETGFLTYLDVSVGKIVAALNARAGRLDVMTR 1058
TASETGFLTYLDVSVGKIVAALNARAGRLDVMT+
Sbjct: 238 TASETGFLTYLDVSVGKIVAALNARAGRLDVMTQ 271
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,427,715
Number of extensions: 800069
Number of successful extensions: 5090
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5002
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065628.1| WD repeat-containing protein 46 [Mus musculus]. 464 e-131
>ref|NP_065628.1| WD repeat-containing protein 46 [Mus musculus].
Length = 622
Score = 464 bits (1195), Expect = e-131
Identities = 235/326 (72%), Positives = 259/326 (79%)
Frame = +3
Query: 81 METAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXXXXXXXXXRKQKKNREARPQKPK 260
METAPKPG VPPK+D+ QAKRKKPRRYWEEE RK+ + E+RP + K
Sbjct: 1 METAPKPGRGVPPKRDKPQAKRKKPRRYWEEETTPAAVATSPGPPRKKARTGESRPPRSK 60
Query: 261 NAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSK 440
+A I +KSRF KKP + K + +W+ P QR+LSGAQDPF GP P P+E RKF RIDKSK
Sbjct: 61 SAHIAQKSRFSKKPPISKTAPDWKKP--QRTLSGAQDPFPGPVPAPLEEARKFCRIDKSK 118
Query: 441 KLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEA 620
LP SK K QS+L+ AEA+EEE SV+AAR+ELLLAEEPGFL GEDGEDTA+I Q DI EA
Sbjct: 119 TLPHSKPKTQSKLEKAEAQEEEASVRAARAELLLAEEPGFLVGEDGEDTAKILQTDIVEA 178
Query: 621 VDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMCEINVMEAV 800
VDIASAAKHFDLNLRQFGPYRLNYS VAALDWVTKKLMCEINVMEAV
Sbjct: 179 VDIASAAKHFDLNLRQFGPYRLNYSRTGRHLALGGRRGHVAALDWVTKKLMCEINVMEAV 238
Query: 801 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFL 980
RDI FLHSEALLAVAQNRWL+IYDNQGIELHC+RRCDR+TRLEFLPFHFLLAT SETGFL
Sbjct: 239 RDIHFLHSEALLAVAQNRWLYIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATTSETGFL 298
Query: 981 TYLDVSVGKIVAALNARAGRLDVMTR 1058
TYLDVSVGKIV ALN RAGRL VM +
Sbjct: 299 TYLDVSVGKIVTALNVRAGRLSVMAQ 324
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 35,155,921
Number of extensions: 1027287
Number of successful extensions: 6180
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6015
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005443.3| WD repeat-containing protein 46 isoform 1 [Homo... 515 e-146
Alignment gi|NP_001157739.1| WD repeat-containing protein 46 isoform 2 [H... 427 e-120
>ref|NP_005443.3| WD repeat-containing protein 46 isoform 1 [Homo sapiens].
Length = 610
Score = 515 bits (1326), Expect = e-146
Identities = 261/326 (80%), Positives = 277/326 (84%)
Frame = +3
Query: 81 METAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXXXXXXXXXRKQKKNREARPQKPK 260
METAPKPG DVPPKKD+LQ KRKKPRRYWEEE R KKNRE RPQ+PK
Sbjct: 1 METAPKPGKDVPPKKDKLQTKRKKPRRYWEEETVPTTAGASPGPPRN-KKNRELRPQRPK 59
Query: 261 NAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSK 440
NA I KKSR KKPQVPKK +EW++P QR LSG QDPF GPAPVPVEVV+KF RIDKS+
Sbjct: 60 NAYILKKSRISKKPQVPKKPREWKNPESQRGLSGTQDPFPGPAPVPVEVVQKFCRIDKSR 119
Query: 441 KLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEA 620
KLP SK+K +SRL+ AEAEEEE S+KAARSELLLAEEPGFLEGEDGEDTA+I QADI EA
Sbjct: 120 KLPHSKAKTRSRLEVAEAEEEETSIKAARSELLLAEEPGFLEGEDGEDTAKICQADIVEA 179
Query: 621 VDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMCEINVMEAV 800
VDIASAAKHFDLNLRQFGPYRLNYS VAALDWVTKKLMCEINVMEAV
Sbjct: 180 VDIASAAKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAV 239
Query: 801 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFL 980
RDIRFLHSEALLAVAQNRWLHIYDNQGIELHC+RRCDR+TRLEFLPFHFLLATASETGFL
Sbjct: 240 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFL 299
Query: 981 TYLDVSVGKIVAALNARAGRLDVMTR 1058
TYLDVSVGKIVAALNARAGRLDVM++
Sbjct: 300 TYLDVSVGKIVAALNARAGRLDVMSQ 325
>ref|NP_001157739.1| WD repeat-containing protein 46 isoform 2 [Homo sapiens].
Length = 556
Score = 427 bits (1099), Expect = e-120
Identities = 229/326 (70%), Positives = 243/326 (74%)
Frame = +3
Query: 81 METAPKPGSDVPPKKDRLQAKRKKPRRYWEEEXXXXXXXXXXXXXRKQKKNREARPQKPK 260
METAPKPG DVPPKKD+LQ KRKKPR + KN E+
Sbjct: 1 METAPKPGKDVPPKKDKLQTKRKKPREW---------------------KNPES------ 33
Query: 261 NAPIQKKSRFPKKPQVPKKSQEWRSPGPQRSLSGAQDPFAGPAPVPVEVVRKFRRIDKSK 440
QR LSG QDPF GPAPVPVEVV+KF RIDKS+
Sbjct: 34 ----------------------------QRGLSGTQDPFPGPAPVPVEVVQKFCRIDKSR 65
Query: 441 KLPRSKSKAQSRLDAAEAEEEEISVKAARSELLLAEEPGFLEGEDGEDTARIRQADIAEA 620
KLP SK+K +SRL+ AEAEEEE S+KAARSELLLAEEPGFLEGEDGEDTA+I QADI EA
Sbjct: 66 KLPHSKAKTRSRLEVAEAEEEETSIKAARSELLLAEEPGFLEGEDGEDTAKICQADIVEA 125
Query: 621 VDIASAAKHFDLNLRQFGPYRLNYSXXXXXXXXXXXXXXVAALDWVTKKLMCEINVMEAV 800
VDIASAAKHFDLNLRQFGPYRLNYS VAALDWVTKKLMCEINVMEAV
Sbjct: 126 VDIASAAKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAV 185
Query: 801 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCVRRCDRITRLEFLPFHFLLATASETGFL 980
RDIRFLHSEALLAVAQNRWLHIYDNQGIELHC+RRCDR+TRLEFLPFHFLLATASETGFL
Sbjct: 186 RDIRFLHSEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFL 245
Query: 981 TYLDVSVGKIVAALNARAGRLDVMTR 1058
TYLDVSVGKIVAALNARAGRLDVM++
Sbjct: 246 TYLDVSVGKIVAALNARAGRLDVMSQ 271
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,832,437
Number of extensions: 1246044
Number of successful extensions: 7832
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7681
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008554
(1062 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 428 e-117
>Sscrofa_Chr07
|| Length = 134764511
Score = 428 bits (216), Expect = e-117
Identities = 216/216 (100%)
Strand = Plus / Minus
Query: 148 agaaacctcggcgatactgggaggaagagaccgctccgacagctgccggagcctctccgg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156847 agaaacctcggcgatactgggaggaagagaccgctccgacagctgccggagcctctccgg 34156788
Query: 208 gtccccctcgtaaacagaagaagaatcgagaggcccgccctcagaagccaaagaacgctc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156787 gtccccctcgtaaacagaagaagaatcgagaggcccgccctcagaagccaaagaacgctc 34156728
Query: 268 ccatccaaaagaagtctcggttccccaagaagccccaggtcccaaagaaatcccaagaat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156727 ccatccaaaagaagtctcggttccccaagaagccccaggtcccaaagaaatcccaagaat 34156668
Query: 328 ggaggagtccaggccctcagcggagcttgtctgggg 363
||||||||||||||||||||||||||||||||||||
Sbjct: 34156667 ggaggagtccaggccctcagcggagcttgtctgggg 34156632
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Minus
Query: 811 ggtttctgcactcagaggcactgcttgctgttgctcagaaccgttggcttcacatttacg 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155297 ggtttctgcactcagaggcactgcttgctgttgctcagaaccgttggcttcacatttacg 34155238
Query: 871 acaaccagggcatcgagctccattgcgtccgccgctgtgaccgcatcacccggcttgagt 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155237 acaaccagggcatcgagctccattgcgtccgccgctgtgaccgcatcacccggcttgagt 34155178
Query: 931 tcctgcccttccacttcctcctggccacggct 962
||||||||||||||||||||||||||||||||
Sbjct: 34155177 tcctgcccttccacttcctcctggccacggct 34155146
Score = 272 bits (137), Expect = 4e-70
Identities = 137/137 (100%)
Strand = Plus / Minus
Query: 13 gagttttcaatccgactgtgggacagctgagaggagtttgcacgtgtgtcgcggttcggg 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34157080 gagttttcaatccgactgtgggacagctgagaggagtttgcacgtgtgtcgcggttcggg 34157021
Query: 73 tgggcttgatggagacagcccccaagcctggcagtgatgtcccgcccaagaaggacagac 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34157020 tgggcttgatggagacagcccccaagcctggcagtgatgtcccgcccaagaaggacagac 34156961
Query: 133 ttcaggccaagagaaag 149
|||||||||||||||||
Sbjct: 34156960 ttcaggccaagagaaag 34156944
Score = 232 bits (117), Expect = 3e-58
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 442 agctgccccgttccaagtccaaagcccaaagccggcttgatgctgctgaagctgaggaag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156314 agctgccccgttccaagtccaaagcccaaagccggcttgatgctgctgaagctgaggaag 34156255
Query: 502 aggaaataagcgtcaaagctgctcgttctgagctgctgctggctgaggaacctgggt 558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156254 aggaaataagcgtcaaagctgctcgttctgagctgctgctggctgaggaacctgggt 34156198
Score = 216 bits (109), Expect = 2e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 705 aggcacctggctttgggagggcgacggggtcatgtggccgccctcgactgggtgacaaag 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155524 aggcacctggctttgggagggcgacggggtcatgtggccgccctcgactgggtgacaaag 34155465
Query: 765 aagcttatgtgcgagatcaacgtcatggaggcggtgcgggacatccggt 813
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155464 aagcttatgtgcgagatcaacgtcatggaggcggtgcgggacatccggt 34155416
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 963 tcagagacagggtttctgacctacttggacgtgtcagtgggcaagatcgtggcagctctg 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155029 tcagagacagggtttctgacctacttggacgtgtcagtgggcaagatcgtggcagctctg 34154970
Query: 1023 aacgcccgggctggacggctcgacgtcatgaccc 1056
||||||||||||||||||||||||||||||||||
Sbjct: 34154969 aacgcccgggctggacggctcgacgtcatgaccc 34154936
Score = 176 bits (89), Expect = 2e-41
Identities = 89/89 (100%)
Strand = Plus / Minus
Query: 556 ggtttctggaaggtgaggatggggaggacacagcaaggatacgccaggctgacatcgcag 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156077 ggtttctggaaggtgaggatggggaggacacagcaaggatacgccaggctgacatcgcag 34156018
Query: 616 aggctgtggatattgcaagtgcagccaag 644
|||||||||||||||||||||||||||||
Sbjct: 34156017 aggctgtggatattgcaagtgcagccaag 34155989
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 362 ggcccaggacccgtttgcaggccccgcccctgtccctgtggaggtagttcgaaagttccg 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34156524 ggcccaggacccgtttgcaggccccgcccctgtccctgtggaggtagttcgaaagttccg 34156465
Query: 422 tcgcatcgacaaatccaaaaag 443
||||||||||||||||||||||
Sbjct: 34156464 tcgcatcgacaaatccaaaaag 34156443
Score = 129 bits (65), Expect = 3e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 643 agcactttgacttgaacttgaggcagtttggaccctacaggctgaattactctcgaacag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34155855 agcactttgacttgaacttgaggcagtttggaccctacaggctgaattactctcgaacag 34155796
Query: 703 ggagg 707
|||||
Sbjct: 34155795 ggagg 34155791
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,676,975
Number of extensions: 158
Number of successful extensions: 158
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 9
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)