Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos ... 635 0.0
Alignment gi|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos ... 273 3e-73
Alignment gi|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like... 188 1e-47
>ref|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos taurus].
Length = 374
Score = 635 bits (1638), Expect = 0.0
Identities = 303/374 (81%), Positives = 309/374 (82%)
Frame = +3
Query: 27 MAAPALGPAQGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 206
MAAPALGPA+G QR
Sbjct: 1 MAAPALGPARGCGAELTLVLLLSLFLLLGWAAGGEEAGPEAGAPSLVGSCGCGNPQRPGA 60
Query: 207 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 386
REANAPG VP R P TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 QGSSAAAHRYSREANAPGSVPGGRPSPPTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 387 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 566
IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVKSDIQQAVAAAPWW
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKSDIQQAVAAAPWW 180
Query: 567 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 746
LPVKGANWRHPEGPDSTV+HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ
Sbjct: 181 LPVKGANWRHPEGPDSTVLHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 240
Query: 747 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 926
NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE
Sbjct: 241 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 300
Query: 927 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 1106
WTSDWWT+HH+AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN
Sbjct: 301 WTSDWWTVHHSAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 360
Query: 1107 LGFRCAADHQPTTG 1148
LGFRCAADH PTTG
Sbjct: 361 LGFRCAADHLPTTG 374
>ref|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos taurus].
Length = 301
Score = 273 bits (698), Expect = 3e-73
Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 3/280 (1%)
Frame = +3
Query: 297 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 476
MV +P G F MGTD P +DGE P R V + F +D + V+N +F +FV Y TEAE
Sbjct: 30 MVQLPGGRFQMGTDSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFREFVREKKYRTEAE 88
Query: 477 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 656
FG SFVFE ++SD++++ Q + + WWLPV+ A WR P GP S + + + PV+HVS
Sbjct: 89 VFGWSFVFEDLVSDELRNKATQRMQSLLWWLPVERAFWRQPAGPGSGIREKLEFPVVHVS 148
Query: 657 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 836
WNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGNK QP + N+WQG+FP +
Sbjct: 149 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNKFQP---NRTNLWQGKFPKGDK 205
Query: 837 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDRVK 1013
EDGF G +PV+AFPP N YGLY++VGN WEWT+ + + AA++ + RV
Sbjct: 206 AEDGFHGVSPVNAFPPQNDYGLYDLVGNVWEWTA---SQYQAADQDM----------RVL 252
Query: 1014 KGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 253 RGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 292
>ref|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like, partial [Bos taurus].
Length = 173
Score = 188 bits (477), Expect = 1e-47
Identities = 106/173 (61%), Positives = 109/173 (63%)
Frame = +3
Query: 27 MAAPALGPAQGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 206
MAAPALGPA+G QR
Sbjct: 1 MAAPALGPARGCGAELTLVLLLSLFLLLGWAAGGEEAGPEAGAPSLVGSCGCGNPQRPGA 60
Query: 207 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 386
REANAPG VP R P TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 QGSSAAAHRYSREANAPGSVPGGRPSPPTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 387 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQA 545
IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVKSDIQQA
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKSDIQQA 173
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 57,119,677
Number of extensions: 1656177
Number of successful extensions: 4376
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4372
Number of HSP's successfully gapped: 3
Length of query: 560
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 453
Effective length of database: 14,140,958
Effective search space: 6405853974
Effective search space used: 6405853974
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541796.2| PREDICTED: similar to sulfatase modifying facto... 619 e-177
Alignment gi|XP_536829.2| PREDICTED: similar to sulfatase modifying facto... 265 8e-71
>ref|XP_541796.2| PREDICTED: similar to sulfatase modifying factor 1 [Canis
familiaris].
Length = 374
Score = 619 bits (1595), Expect = e-177
Identities = 282/303 (93%), Positives = 291/303 (96%)
Frame = +3
Query: 240 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 419
REANAPG VP ER TKMV IPAGVFTMGTDDPQIKQDGEAPARRV+IDAFYMDAYEV
Sbjct: 72 REANAPGQVPGERPLAPTKMVLIPAGVFTMGTDDPQIKQDGEAPARRVSIDAFYMDAYEV 131
Query: 420 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 599
SNA+FEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK+DIQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNADFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTDIQQAVAAAPWWLPVKGANWRHP 191
Query: 600 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 779
EGPDST +HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ
Sbjct: 192 EGPDSTTLHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 251
Query: 780 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 959
PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGN WEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNVWEWTSDWWTVHHS 311
Query: 960 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1139
E+T NPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD QP
Sbjct: 312 VEKTHNPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADRQP 371
Query: 1140 TTG 1148
TTG
Sbjct: 372 TTG 374
>ref|XP_536829.2| PREDICTED: similar to sulfatase modifying factor 2 [Canis
familiaris].
Length = 404
Score = 265 bits (678), Expect = 8e-71
Identities = 129/282 (45%), Positives = 184/282 (65%), Gaps = 3/282 (1%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV +P G F MGT+ P ++GE P R V + F +D + V+N +F +FV Y TE
Sbjct: 131 TSMVQLPGGRFQMGTNSPD-GRNGEGPVREVTVKPFAIDVFPVTNKDFREFVREKKYRTE 189
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE +++++++ + + + WWLPV+ A WR P GP+S + R + PVLH
Sbjct: 190 AEMFGWSFVFEEFVANELRNKVTHQMESVLWWLPVERAFWRQPAGPNSGIQERLELPVLH 249
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 250 VSWNDARAYCAWKGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 306
Query: 831 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 1007
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ +++ +A++ + R
Sbjct: 307 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SLYPSADQDM----------R 353
Query: 1008 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
V +G S++ S + R R NTPDS++ NLGFRCA+
Sbjct: 354 VLRGASWIDTADGSANHLARVTTRMGNTPDSASDNLGFRCAS 395
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 58,592,047
Number of extensions: 1528580
Number of successful extensions: 4028
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4024
Number of HSP's successfully gapped: 2
Length of query: 560
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 452
Effective length of database: 15,274,216
Effective search space: 6903945632
Effective search space used: 6903945632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like... 671 0.0
Alignment gi|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like... 609 e-174
Alignment gi|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like... 268 7e-72
Alignment gi|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like... 241 7e-64
>ref|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like isoform 1 [Sus scrofa].
Length = 374
Score = 671 bits (1730), Expect = 0.0
Identities = 319/374 (85%), Positives = 319/374 (85%)
Frame = +3
Query: 27 MAAPALGPAQGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 206
MAAPALGPAQGSF QRH
Sbjct: 1 MAAPALGPAQGSFAGLGLVLLLPLLLLLGGVAGGEEAEAGAGAASLAGSCGCGAPQRHGA 60
Query: 207 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 386
REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 YGSSAAAQQYSREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 387 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 566
IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 180
Query: 567 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 746
LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ
Sbjct: 181 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 240
Query: 747 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 926
NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE
Sbjct: 241 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 300
Query: 927 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 1106
WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN
Sbjct: 301 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 360
Query: 1107 LGFRCAADHQPTTG 1148
LGFRCAADHQPTTG
Sbjct: 361 LGFRCAADHQPTTG 374
>ref|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like isoform 2 [Sus scrofa].
Length = 349
Score = 609 bits (1571), Expect = e-174
Identities = 294/374 (78%), Positives = 294/374 (78%)
Frame = +3
Query: 27 MAAPALGPAQGSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 206
MAAPALGPAQGSF QRH
Sbjct: 1 MAAPALGPAQGSFAGLGLVLLLPLLLLLGGVAGGEEAEAGAGAASLAGSCGCGAPQRHGA 60
Query: 207 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 386
REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 YGSSAAAQQYSREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 387 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 566
IDAFYMDAYEVSNAEFEKFVNSTGYLTE VAAAPWW
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTE-------------------------VAAAPWW 155
Query: 567 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 746
LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ
Sbjct: 156 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 215
Query: 747 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 926
NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE
Sbjct: 216 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 275
Query: 927 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 1106
WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN
Sbjct: 276 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 335
Query: 1107 LGFRCAADHQPTTG 1148
LGFRCAADHQPTTG
Sbjct: 336 LGFRCAADHQPTTG 349
>ref|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Sus scrofa].
Length = 301
Score = 268 bits (685), Expect = 7e-72
Identities = 133/282 (47%), Positives = 181/282 (64%), Gaps = 3/282 (1%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 28 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 86
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE ++ D+++S + + WWLPV+ A WR P GP S + R + PV+H
Sbjct: 87 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 146
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 147 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 203
Query: 831 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 1007
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 204 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 250
Query: 1008 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
V +G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 251 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 292
>ref|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Sus scrofa].
Length = 286
Score = 241 bits (616), Expect = 7e-64
Identities = 126/282 (44%), Positives = 172/282 (60%), Gaps = 3/282 (1%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 28 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 86
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE ++ D+++S K + P GP S + R + PV+H
Sbjct: 87 AEAFGWSFVFEDLVPDELRS---------------KATHQMQPAGPGSGIRERLEFPVVH 131
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 132 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 188
Query: 831 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 1007
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 189 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 235
Query: 1008 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
V +G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 236 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 277
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 38,446,812
Number of extensions: 1340888
Number of successful extensions: 2729
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2719
Number of HSP's successfully gapped: 4
Length of query: 560
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 456
Effective length of database: 8,754,644
Effective search space: 3992117664
Effective search space used: 3992117664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus mus... 595 e-170
Alignment gi|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like... 262 5e-70
Alignment gi|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus mus... 262 5e-70
Alignment gi|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like... 198 1e-50
Alignment gi|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like... 198 1e-50
>ref|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus musculus].
Length = 372
Score = 595 bits (1534), Expect = e-170
Identities = 268/301 (89%), Positives = 283/301 (94%)
Frame = +3
Query: 240 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 419
REANAPG R LTKMVPIPAGVFTMGTDDPQI+QDGEAPARRV +D FYMDAYEV
Sbjct: 70 REANAPGLTSGPRPLALTKMVPIPAGVFTMGTDDPQIRQDGEAPARRVTVDGFYMDAYEV 129
Query: 420 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 599
SNA+FEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK+ I QAVAAAPWWLPVKGANWRHP
Sbjct: 130 SNADFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTHIHQAVAAAPWWLPVKGANWRHP 189
Query: 600 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 779
EGPDS+++HR +HPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ
Sbjct: 190 EGPDSSILHRSNHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 249
Query: 780 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 959
PKGQHYANIWQG+FPV+NTGEDGF+GTAPVDAFPPNGYGLYNIVGN WEWTSDWWT+HH+
Sbjct: 250 PKGQHYANIWQGKFPVSNTGEDGFQGTAPVDAFPPNGYGLYNIVGNVWEWTSDWWTVHHS 309
Query: 960 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1139
EET NPKGP SGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADH P
Sbjct: 310 VEETFNPKGPTSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHLP 369
Query: 1140 T 1142
T
Sbjct: 370 T 370
>ref|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Mus
musculus].
Length = 308
Score = 262 bits (670), Expect = 5e-70
Identities = 132/281 (46%), Positives = 178/281 (63%), Gaps = 4/281 (1%)
Frame = +3
Query: 297 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 476
MV +P G F MGTD P +DGE PAR V + F +D + V+N +F +FV Y TEAE
Sbjct: 38 MVHLPGGRFLMGTDAPD-GRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKYQTEAE 96
Query: 477 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 656
FG SFVFE +S +++ + + A WW PV A WR P GP S + + + PV+HVS
Sbjct: 97 AFGWSFVFEDFVSPELRKQ-ENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVS 155
Query: 657 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 836
WNDA AYC W G+RLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP +
Sbjct: 156 WNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDK 212
Query: 837 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKD-RV 1010
EDGF G +PV+AFPP N YGLY+++GN WEWT+ + P+G+D RV
Sbjct: 213 AEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTY--------------QPAGQDMRV 258
Query: 1011 KKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 259 LRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 299
>ref|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus musculus].
Length = 308
Score = 262 bits (670), Expect = 5e-70
Identities = 132/281 (46%), Positives = 178/281 (63%), Gaps = 4/281 (1%)
Frame = +3
Query: 297 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 476
MV +P G F MGTD P +DGE PAR V + F +D + V+N +F +FV Y TEAE
Sbjct: 38 MVHLPGGRFLMGTDAPD-GRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKYQTEAE 96
Query: 477 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 656
FG SFVFE +S +++ + + A WW PV A WR P GP S + + + PV+HVS
Sbjct: 97 AFGWSFVFEDFVSPELRKQ-ENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVS 155
Query: 657 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 836
WNDA AYC W G+RLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP +
Sbjct: 156 WNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDK 212
Query: 837 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKD-RV 1010
EDGF G +PV+AFPP N YGLY+++GN WEWT+ + P+G+D RV
Sbjct: 213 AEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTY--------------QPAGQDMRV 258
Query: 1011 KKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1127
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 259 LRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 299
>ref|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Mus
musculus].
Length = 190
Score = 198 bits (503), Expect = 1e-50
Identities = 95/196 (48%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Frame = +3
Query: 552 AAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSC 731
A WW PV A WR P GP S + + + PV+HVSWNDA AYC W G+RLPTE EWE++
Sbjct: 3 AVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAA 62
Query: 732 RGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNI 908
RGGL+ +++PWGN+ QP + N+WQG+FP + EDGF G +PV+AFPP N YGLY++
Sbjct: 63 RGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDL 119
Query: 909 VGNAWEWTSDWWTIHHAAEETINPKGPPSGKD-RVKKGGSYM--CHKSYCYRYRCAARSQ 1079
+GN WEWT+ + P+G+D RV +G S++ S +R R R
Sbjct: 120 MGNVWEWTASTY--------------QPAGQDMRVLRGASWIDTADGSANHRARVTTRMG 165
Query: 1080 NTPDSSASNLGFRCAA 1127
NTPDS++ NLGFRCA+
Sbjct: 166 NTPDSASDNLGFRCAS 181
>ref|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like isoform 3 [Mus
musculus].
Length = 190
Score = 198 bits (503), Expect = 1e-50
Identities = 95/196 (48%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Frame = +3
Query: 552 AAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSC 731
A WW PV A WR P GP S + + + PV+HVSWNDA AYC W G+RLPTE EWE++
Sbjct: 3 AVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAA 62
Query: 732 RGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNI 908
RGGL+ +++PWGN+ QP + N+WQG+FP + EDGF G +PV+AFPP N YGLY++
Sbjct: 63 RGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDL 119
Query: 909 VGNAWEWTSDWWTIHHAAEETINPKGPPSGKD-RVKKGGSYM--CHKSYCYRYRCAARSQ 1079
+GN WEWT+ + P+G+D RV +G S++ S +R R R
Sbjct: 120 MGNVWEWTASTY--------------QPAGQDMRVLRGASWIDTADGSANHRARVTTRMG 165
Query: 1080 NTPDSSASNLGFRCAA 1127
NTPDS++ NLGFRCA+
Sbjct: 166 NTPDSASDNLGFRCAS 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 48,827,116
Number of extensions: 1267552
Number of successful extensions: 3394
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3373
Number of HSP's successfully gapped: 5
Length of query: 560
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 453
Effective length of database: 12,403,707
Effective search space: 5618879271
Effective search space used: 5618879271
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precurso... 618 e-177
Alignment gi|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precu... 563 e-160
Alignment gi|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precu... 563 e-160
Alignment gi|NP_056226.2| sulfatase-modifying factor 2 isoform b precurso... 272 8e-73
Alignment gi|NP_001035934.2| sulfatase-modifying factor 2 isoform c precu... 243 3e-64
Alignment gi|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo... 224 2e-58
Alignment gi|NP_001123541.1| sulfatase-modifying factor 2 isoform e precu... 219 5e-57
Alignment gi|NP_001035935.2| sulfatase-modifying factor 2 isoform d precu... 89 2e-17
>ref|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precursor [Homo sapiens].
Length = 374
Score = 618 bits (1594), Expect = e-177
Identities = 279/301 (92%), Positives = 291/301 (96%)
Frame = +3
Query: 240 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 419
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 420 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 599
SN EFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK++IQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHP 191
Query: 600 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 779
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 192 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 251
Query: 780 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 959
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 311
Query: 960 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1139
EET+NPKGPPSGKDRVKKGGSYMCH+SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 312 VEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 371
Query: 1140 T 1142
T
Sbjct: 372 T 372
>ref|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precursor [Homo sapiens].
Length = 354
Score = 563 bits (1451), Expect = e-160
Identities = 260/301 (86%), Positives = 271/301 (90%)
Frame = +3
Query: 240 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 419
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 420 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 599
SN EFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK++IQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHP 191
Query: 600 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 779
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 192 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 251
Query: 780 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 959
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 311
Query: 960 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1139
EET+NP SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 312 VEETLNP--------------------SYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 351
Query: 1140 T 1142
T
Sbjct: 352 T 352
>ref|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precursor [Homo sapiens].
Length = 349
Score = 563 bits (1450), Expect = e-160
Identities = 258/301 (85%), Positives = 266/301 (88%)
Frame = +3
Query: 240 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 419
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 420 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 599
SN EFEKFVNSTGYLTE VAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTE-------------------------VAAAPWWLPVKGANWRHP 166
Query: 600 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 779
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 167 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 226
Query: 780 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 959
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 227 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 286
Query: 960 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1139
EET+NPKGPPSGKDRVKKGGSYMCH+SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 287 VEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 346
Query: 1140 T 1142
T
Sbjct: 347 T 347
>ref|NP_056226.2| sulfatase-modifying factor 2 isoform b precursor [Homo sapiens].
Length = 320
Score = 272 bits (695), Expect = 8e-73
Identities = 136/283 (48%), Positives = 180/283 (63%), Gaps = 3/283 (1%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLH 165
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 166 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 222
Query: 831 NTGEDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 1007
+ EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + R
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------R 269
Query: 1008 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1130
V +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 270 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 312
>ref|NP_001035934.2| sulfatase-modifying factor 2 isoform c precursor [Homo sapiens].
Length = 305
Score = 243 bits (621), Expect = 3e-64
Identities = 130/283 (45%), Positives = 172/283 (60%), Gaps = 3/283 (1%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE +SD++++ Q P+K P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQ---------PMK------PAGPGSGIRERLEHPVLH 150
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 151 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 207
Query: 831 NTGEDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDR 1007
+ EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + R
Sbjct: 208 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------R 254
Query: 1008 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1130
V +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 255 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 297
>ref|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo sapiens].
Length = 213
Score = 224 bits (571), Expect = 2e-58
Identities = 110/220 (50%), Positives = 146/220 (66%), Gaps = 3/220 (1%)
Frame = +3
Query: 480 FGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSW 659
FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLHVSW
Sbjct: 2 FGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSW 61
Query: 660 NDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTG 839
NDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP +
Sbjct: 62 NDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKGDKA 118
Query: 840 EDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKGPPSGKDRVKK 1016
EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + RV +
Sbjct: 119 EDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------RVLR 165
Query: 1017 GGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1130
G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 166 GASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 205
>ref|NP_001123541.1| sulfatase-modifying factor 2 isoform e precursor [Homo sapiens].
Length = 358
Score = 219 bits (559), Expect = 5e-57
Identities = 103/203 (50%), Positives = 133/203 (65%), Gaps = 1/203 (0%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 650
AE FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLH 165
Query: 651 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 830
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 166 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 222
Query: 831 NTGEDGFRGTAPVDAFP-PNGYG 896
+ EDGF G +PV+AFP N YG
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYG 245
>ref|NP_001035935.2| sulfatase-modifying factor 2 isoform d precursor [Homo sapiens].
Length = 236
Score = 88.6 bits (218), Expect = 2e-17
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Frame = +3
Query: 810 QGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPKG 986
+G+FP + EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ +
Sbjct: 132 KGKFPKGDKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM---- 184
Query: 987 PPSGKDRVKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1130
RV +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 185 ------RVLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 228
Score = 72.0 bits (175), Expect = 2e-12
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +3
Query: 291 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 470
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 471 AEKFGDSFVFEGILSDQVKSDIQQ 542
AE FG SFVFE +SD++++ Q
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQ 129
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 57,505,776
Number of extensions: 1492836
Number of successful extensions: 4024
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4009
Number of HSP's successfully gapped: 9
Length of query: 560
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 452
Effective length of database: 14,737,052
Effective search space: 6661147504
Effective search space used: 6661147504
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008556
(1681 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 722 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 722 bits (364), Expect = 0.0
Identities = 364/364 (100%)
Strand = Plus / Minus
Query: 1039 agtcctactgctacaggtaccgctgtgctgctcgaagccagaacacgccggacagctcgg 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256471 agtcctactgctacaggtaccgctgtgctgctcgaagccagaacacgccggacagctcgg 67256412
Query: 1099 cttcaaatctggggttccgctgtgcagctgaccaccagcccaccacaggctgagtcagga 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256411 cttcaaatctggggttccgctgtgcagctgaccaccagcccaccacaggctgagtcagga 67256352
Query: 1159 ggagtcttcccgaatccgagaagtcgtgtctaatgtgcatgcggcttccttcagaatgct 1218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256351 ggagtcttcccgaatccgagaagtcgtgtctaatgtgcatgcggcttccttcagaatgct 67256292
Query: 1219 gacccacctcgtggaagaatttccacatcaggtgggctacgtacctgcccgatggccaaa 1278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256291 gacccacctcgtggaagaatttccacatcaggtgggctacgtacctgcccgatggccaaa 67256232
Query: 1279 ggaactgtgttgtgagaccaaattgccgctgacctgcatcagcatgtgcgctttattgtg 1338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256231 ggaactgtgttgtgagaccaaattgccgctgacctgcatcagcatgtgcgctttattgtg 67256172
Query: 1339 tgatgtatttttggagctcattgccatgttttatttttgagagtcttttaaagagggagg 1398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256171 tgatgtatttttggagctcattgccatgttttatttttgagagtcttttaaagagggagg 67256112
Query: 1399 aggt 1402
||||
Sbjct: 67256111 aggt 67256108
Score = 573 bits (289), Expect = e-160
Identities = 289/289 (100%)
Strand = Plus / Minus
Query: 8 acatggctcgcgggacaacatggctgcgcccgcgctagggccagctcaaggaagcttcgc 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345923 acatggctcgcgggacaacatggctgcgcccgcgctagggccagctcaaggaagcttcgc 67345864
Query: 68 tggactcggtctcgtccttttgctgccgctgctcttgctgctgggcggagtggcaggagg 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345863 tggactcggtctcgtccttttgctgccgctgctcttgctgctgggcggagtggcaggagg 67345804
Query: 128 cgaagaagccgaggctggggctggtgcggcgtccctcgcgggctcgtgcggttgtggcgc 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345803 cgaagaagccgaggctggggctggtgcggcgtccctcgcgggctcgtgcggttgtggcgc 67345744
Query: 188 tccccagcggcacggggcctatggcagctcagcggccgcgcagcagtactcgcgggaggc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345743 tccccagcggcacggggcctatggcagctcagcggccgcgcagcagtactcgcgggaggc 67345684
Query: 248 gaacgccccgggcccggtccctagagagcggcagttcccgctcacgaag 296
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345683 gaacgccccgggcccggtccctagagagcggcagttcccgctcacgaag 67345635
Score = 351 bits (177), Expect = 8e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 295 agatggtccccatccctgccggagtctttacaatgggcacagatgatcctcagataaagc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67331112 agatggtccccatccctgccggagtctttacaatgggcacagatgatcctcagataaagc 67331053
Query: 355 aggatggggaagcacctgcgaggagagttgctattgatgccttttacatggatgcctatg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67331052 aggatggggaagcacctgcgaggagagttgctattgatgccttttacatggatgcctatg 67330993
Query: 415 aagtcagtaatgctgaatttgagaagtttgtgaactcaactggctatttgacagagg 471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67330992 aagtcagtaatgctgaatttgagaagtttgtgaactcaactggctatttgacagagg 67330936
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 626 caggccagatcacccagttctccacgtctcctggaacgatgccgtggcgtactgcacttg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67302254 caggccagatcacccagttctccacgtctcctggaacgatgccgtggcgtactgcacttg 67302195
Query: 686 ggcagggaagcggttgcccacggaagctgagtgggaatatagctgtcgaggaggcctgca 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67302194 ggcagggaagcggttgcccacggaagctgagtgggaatatagctgtcgaggaggcctgca 67302135
Query: 746 aaatag 751
||||||
Sbjct: 67302134 aaatag 67302129
Score = 236 bits (119), Expect = 3e-59
Identities = 119/119 (100%)
Strand = Plus / Minus
Query: 750 agacttttcccctggggcaacaaactgcagccaaaagggcaacattatgccaacatttgg 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67301371 agacttttcccctggggcaacaaactgcagccaaaagggcaacattatgccaacatttgg 67301312
Query: 810 cagggcgagtttcctgtgaccaacaccggagaggatggcttccgaggaactgcgcctgt 868
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67301311 cagggcgagtttcctgtgaccaacaccggagaggatggcttccgaggaactgcgcctgt 67301253
Score = 226 bits (114), Expect = 3e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 867 gttgatgcctttcctcccaatggttatggcctttacaatatagtagggaacgcctgggaa 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67295588 gttgatgcctttcctcccaatggttatggcctttacaatatagtagggaacgcctgggaa 67295529
Query: 927 tggacctcagactggtggaccattcaccatgctgctgaagaaacaattaaccca 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67295528 tggacctcagactggtggaccattcaccatgctgctgaagaaacaattaaccca 67295475
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 546 gttgcagctgctccctggtggttacctgttaaaggcgctaactggagacacccagaaggg 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67304745 gttgcagctgctccctggtggttacctgttaaaggcgctaactggagacacccagaaggg 67304686
Query: 606 ccggactctactgttgtacacagg 629
||||||||||||||||||||||||
Sbjct: 67304685 ccggactctactgttgtacacagg 67304662
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 469 aggctgagaagtttggtgactcctttgtctttgaaggcatattgagtgaccaagtgaagt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67327548 aggctgagaagtttggtgactcctttgtctttgaaggcatattgagtgaccaagtgaagt 67327489
Query: 529 ctgatatccaacaggcagt 547
|||||||||||||||||||
Sbjct: 67327488 ctgatatccaacaggcagt 67327470
Score = 135 bits (68), Expect = 9e-29
Identities = 84/92 (91%)
Strand = Plus / Minus
Query: 1590 tattgtgatttcatagtgagaatttatgacagattattttttagcaannnnnnncatgtg 1649
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 67255920 tattgtgattncatagtgagaatttatgacagattattttttagcaatttttttcatgtg 67255861
Query: 1650 tgaaacttgggtgatactaatcatgtaaataa 1681
||||||||||||||||||||||||||||||||
Sbjct: 67255860 tgaaacttgggtgatactaatcatgtaaataa 67255829
Score = 119 bits (60), Expect = 5e-24
Identities = 60/60 (100%)
Strand = Plus / Minus
Query: 981 aaaggccccccttctgggaaagaccgggtgaagaaagggggatcctatatgtgccataag 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67266384 aaaggccccccttctgggaaagaccgggtgaagaaagggggatcctatatgtgccataag 67266325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 40,685,995
Number of extensions: 222
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 11
Length of query: 1681
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1659
Effective length of database: 2,808,408,574
Effective search space: 4659149824266
Effective search space used: 4659149824266
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)