Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos ... 634 0.0
Alignment gi|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos ... 273 3e-73
Alignment gi|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like... 187 2e-47
>ref|NP_001069544.1| sulfatase-modifying factor 1 precursor [Bos taurus].
Length = 374
Score = 634 bits (1634), Expect = 0.0
Identities = 290/303 (95%), Positives = 296/303 (97%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPG VP R P TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV
Sbjct: 72 REANAPGSVPGGRPSPPTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SNAEFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVKSDIQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKSDIQQAVAAAPWWLPVKGANWRHP 191
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDSTV+HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ
Sbjct: 192 EGPDSTVLHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 251
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 311
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
AEETINP+GPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADH P
Sbjct: 312 AEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHLP 371
Query: 1116 TTG 1124
TTG
Sbjct: 372 TTG 374
>ref|NP_001014881.1| sulfatase-modifying factor 2 precursor [Bos taurus].
Length = 301
Score = 273 bits (698), Expect = 3e-73
Identities = 135/280 (48%), Positives = 183/280 (65%), Gaps = 3/280 (1%)
Frame = +3
Query: 273 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 452
MV +P G F MGTD P +DGE P R V + F +D + V+N +F +FV Y TEAE
Sbjct: 30 MVQLPGGRFQMGTDSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFREFVREKKYRTEAE 88
Query: 453 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 632
FG SFVFE ++SD++++ Q + + WWLPV+ A WR P GP S + + + PV+HVS
Sbjct: 89 VFGWSFVFEDLVSDELRNKATQRMQSLLWWLPVERAFWRQPAGPGSGIREKLEFPVVHVS 148
Query: 633 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 812
WNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGNK QP + N+WQG+FP +
Sbjct: 149 WNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNKFQP---NRTNLWQGKFPKGDK 205
Query: 813 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDRVK 989
EDGF G +PV+AFPP N YGLY++VGN WEWT+ + + AA++ + RV
Sbjct: 206 AEDGFHGVSPVNAFPPQNDYGLYDLVGNVWEWTA---SQYQAADQDM----------RVL 252
Query: 990 KGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 253 RGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 292
>ref|XP_002702790.1| PREDICTED: sulfatase-modifying factor 1-like, partial [Bos taurus].
Length = 173
Score = 187 bits (476), Expect = 2e-47
Identities = 94/102 (92%), Positives = 96/102 (94%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPG VP R P TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV
Sbjct: 72 REANAPGSVPGGRPSPPTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQA 521
SNAEFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVKSDIQQA
Sbjct: 132 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKSDIQQA 173
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,191,574
Number of extensions: 1439879
Number of successful extensions: 4273
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4269
Number of HSP's successfully gapped: 3
Length of query: 478
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,174,046
Effective search space: 5272745112
Effective search space used: 5272745112
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541796.2| PREDICTED: similar to sulfatase modifying facto... 617 e-177
Alignment gi|XP_536829.2| PREDICTED: similar to sulfatase modifying facto... 265 6e-71
>ref|XP_541796.2| PREDICTED: similar to sulfatase modifying factor 1 [Canis
familiaris].
Length = 374
Score = 617 bits (1592), Expect = e-177
Identities = 281/303 (92%), Positives = 291/303 (96%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPG VP ER TKMV IPAGVFTMGTDDPQIKQDGEAPARRV+IDAFYMDAYEV
Sbjct: 72 REANAPGQVPGERPLAPTKMVLIPAGVFTMGTDDPQIKQDGEAPARRVSIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SNA+FEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK+DIQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNADFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTDIQQAVAAAPWWLPVKGANWRHP 191
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDST +HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ
Sbjct: 192 EGPDSTTLHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 251
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGN WEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNVWEWTSDWWTVHHS 311
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
E+T NP+GPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD QP
Sbjct: 312 VEKTHNPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADRQP 371
Query: 1116 TTG 1124
TTG
Sbjct: 372 TTG 374
>ref|XP_536829.2| PREDICTED: similar to sulfatase modifying factor 2 [Canis
familiaris].
Length = 404
Score = 265 bits (678), Expect = 6e-71
Identities = 129/282 (45%), Positives = 184/282 (65%), Gaps = 3/282 (1%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV +P G F MGT+ P ++GE P R V + F +D + V+N +F +FV Y TE
Sbjct: 131 TSMVQLPGGRFQMGTNSPD-GRNGEGPVREVTVKPFAIDVFPVTNKDFREFVREKKYRTE 189
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE +++++++ + + + WWLPV+ A WR P GP+S + R + PVLH
Sbjct: 190 AEMFGWSFVFEEFVANELRNKVTHQMESVLWWLPVERAFWRQPAGPNSGIQERLELPVLH 249
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 250 VSWNDARAYCAWKGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 306
Query: 807 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDR 983
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ +++ +A++ + R
Sbjct: 307 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SLYPSADQDM----------R 353
Query: 984 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
V +G S++ S + R R NTPDS++ NLGFRCA+
Sbjct: 354 VLRGASWIDTADGSANHLARVTTRMGNTPDSASDNLGFRCAS 395
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,430,951
Number of extensions: 1483831
Number of successful extensions: 3911
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3907
Number of HSP's successfully gapped: 2
Length of query: 478
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 371
Effective length of database: 15,307,552
Effective search space: 5679101792
Effective search space used: 5679101792
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like... 662 0.0
Alignment gi|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like... 601 e-172
Alignment gi|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like... 268 6e-72
Alignment gi|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like... 241 6e-64
>ref|XP_003132384.1| PREDICTED: sulfatase-modifying factor 1-like isoform 1 [Sus scrofa].
Length = 374
Score = 662 bits (1708), Expect = 0.0
Identities = 315/374 (84%), Positives = 316/374 (84%)
Frame = +3
Query: 3 MAAPALGPAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 182
MAAPALGPAQ QRH
Sbjct: 1 MAAPALGPAQGSFAGLGLVLLLPLLLLLGGVAGGEEAEAGAGAASLAGSCGCGAPQRHGA 60
Query: 183 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 362
REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 YGSSAAAQQYSREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 363 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 542
IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 180
Query: 543 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 722
LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ
Sbjct: 181 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 240
Query: 723 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 902
NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE
Sbjct: 241 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 300
Query: 903 WTSDWWTIHHAAEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 1082
WTSDWWTIHHAAEETINP+GPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN
Sbjct: 301 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 360
Query: 1083 LGFRCAADHQPTTG 1124
LGFRCAADHQPTTG
Sbjct: 361 LGFRCAADHQPTTG 374
>ref|XP_003132385.1| PREDICTED: sulfatase-modifying factor 1-like isoform 2 [Sus scrofa].
Length = 349
Score = 601 bits (1549), Expect = e-172
Identities = 290/374 (77%), Positives = 291/374 (77%)
Frame = +3
Query: 3 MAAPALGPAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRHXX 182
MAAPALGPAQ QRH
Sbjct: 1 MAAPALGPAQGSFAGLGLVLLLPLLLLLGGVAGGEEAEAGAGAASLAGSCGCGAPQRHGA 60
Query: 183 XXXXXXXXXXXREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 362
REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA
Sbjct: 61 YGSSAAAQQYSREANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVA 120
Query: 363 IDAFYMDAYEVSNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWW 542
IDAFYMDAYEVSNAEFEKFVNSTGYLTE VAAAPWW
Sbjct: 121 IDAFYMDAYEVSNAEFEKFVNSTGYLTE-------------------------VAAAPWW 155
Query: 543 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 722
LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ
Sbjct: 156 LPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQ 215
Query: 723 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 902
NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE
Sbjct: 216 NRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWE 275
Query: 903 WTSDWWTIHHAAEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 1082
WTSDWWTIHHAAEETINP+GPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN
Sbjct: 276 WTSDWWTIHHAAEETINPKGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASN 335
Query: 1083 LGFRCAADHQPTTG 1124
LGFRCAADHQPTTG
Sbjct: 336 LGFRCAADHQPTTG 349
>ref|XP_003124494.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Sus scrofa].
Length = 301
Score = 268 bits (685), Expect = 6e-72
Identities = 133/282 (47%), Positives = 181/282 (64%), Gaps = 3/282 (1%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 28 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 86
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE ++ D+++S + + WWLPV+ A WR P GP S + R + PV+H
Sbjct: 87 AEAFGWSFVFEDLVPDELRSKATHQMQSLLWWLPVERAFWRQPAGPGSGIRERLEFPVVH 146
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 147 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 203
Query: 807 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDR 983
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 204 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 250
Query: 984 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
V +G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 251 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 292
>ref|XP_003124495.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Sus scrofa].
Length = 286
Score = 241 bits (616), Expect = 6e-64
Identities = 126/282 (44%), Positives = 172/282 (60%), Gaps = 3/282 (1%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV +P G F MGT+ P +DGE P R V + F +D + V+N +F FV Y TE
Sbjct: 28 TGMVQLPGGRFQMGTNSPD-GRDGEGPVREVTVKPFAIDIFPVTNKDFRDFVREKKYRTE 86
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE ++ D+++S K + P GP S + R + PV+H
Sbjct: 87 AEAFGWSFVFEDLVPDELRS---------------KATHQMQPAGPGSGIRERLEFPVVH 131
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP
Sbjct: 132 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNQFQP---NRTNLWQGKFPKG 188
Query: 807 NTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDR 983
+ EDGF G +PV+AFPP N YGLY+++GN WEWT+ + + AA++ + R
Sbjct: 189 DKAEDGFHGVSPVNAFPPQNNYGLYDLMGNVWEWTA---SPYQAADQDM----------R 235
Query: 984 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
V +G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 236 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 277
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,301,671
Number of extensions: 926777
Number of successful extensions: 2629
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 2619
Number of HSP's successfully gapped: 4
Length of query: 478
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 375
Effective length of database: 8,779,541
Effective search space: 3292327875
Effective search space used: 3292327875
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus mus... 594 e-170
Alignment gi|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like... 262 4e-70
Alignment gi|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus mus... 262 4e-70
Alignment gi|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like... 198 1e-50
Alignment gi|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like... 198 1e-50
>ref|NP_666049.2| sulfatase-modifying factor 1 precursor [Mus musculus].
Length = 372
Score = 594 bits (1531), Expect = e-170
Identities = 267/301 (88%), Positives = 283/301 (94%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPG R LTKMVPIPAGVFTMGTDDPQI+QDGEAPARRV +D FYMDAYEV
Sbjct: 70 REANAPGLTSGPRPLALTKMVPIPAGVFTMGTDDPQIRQDGEAPARRVTVDGFYMDAYEV 129
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SNA+FEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK+ I QAVAAAPWWLPVKGANWRHP
Sbjct: 130 SNADFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTHIHQAVAAAPWWLPVKGANWRHP 189
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDS+++HR +HPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ
Sbjct: 190 EGPDSSILHRSNHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 249
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQG+FPV+NTGEDGF+GTAPVDAFPPNGYGLYNIVGN WEWTSDWWT+HH+
Sbjct: 250 PKGQHYANIWQGKFPVSNTGEDGFQGTAPVDAFPPNGYGLYNIVGNVWEWTSDWWTVHHS 309
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
EET NP+GP SGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADH P
Sbjct: 310 VEETFNPKGPTSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHLP 369
Query: 1116 T 1118
T
Sbjct: 370 T 370
>ref|XP_003086547.1| PREDICTED: sulfatase-modifying factor 2-like isoform 1 [Mus
musculus].
Length = 308
Score = 262 bits (670), Expect = 4e-70
Identities = 132/281 (46%), Positives = 178/281 (63%), Gaps = 4/281 (1%)
Frame = +3
Query: 273 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 452
MV +P G F MGTD P +DGE PAR V + F +D + V+N +F +FV Y TEAE
Sbjct: 38 MVHLPGGRFLMGTDAPD-GRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKYQTEAE 96
Query: 453 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 632
FG SFVFE +S +++ + + A WW PV A WR P GP S + + + PV+HVS
Sbjct: 97 AFGWSFVFEDFVSPELRKQ-ENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVS 155
Query: 633 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 812
WNDA AYC W G+RLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP +
Sbjct: 156 WNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDK 212
Query: 813 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKD-RV 986
EDGF G +PV+AFPP N YGLY+++GN WEWT+ + P+G+D RV
Sbjct: 213 AEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTY--------------QPAGQDMRV 258
Query: 987 KKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 259 LRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 299
>ref|NP_080721.1| sulfatase-modifying factor 2 precursor [Mus musculus].
Length = 308
Score = 262 bits (670), Expect = 4e-70
Identities = 132/281 (46%), Positives = 178/281 (63%), Gaps = 4/281 (1%)
Frame = +3
Query: 273 MVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTEAE 452
MV +P G F MGTD P +DGE PAR V + F +D + V+N +F +FV Y TEAE
Sbjct: 38 MVHLPGGRFLMGTDAPD-GRDGEGPAREVTVKPFAIDIFPVTNKDFREFVREKKYQTEAE 96
Query: 453 KFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVS 632
FG SFVFE +S +++ + + A WW PV A WR P GP S + + + PV+HVS
Sbjct: 97 AFGWSFVFEDFVSPELRKQ-ENLMPAVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVS 155
Query: 633 WNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNT 812
WNDA AYC W G+RLPTE EWE++ RGGL+ +++PWGN+ QP + N+WQG+FP +
Sbjct: 156 WNDAGAYCAWRGRRLPTEEEWEFAARGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDK 212
Query: 813 GEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKD-RV 986
EDGF G +PV+AFPP N YGLY+++GN WEWT+ + P+G+D RV
Sbjct: 213 AEDGFHGLSPVNAFPPQNNYGLYDLMGNVWEWTASTY--------------QPAGQDMRV 258
Query: 987 KKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAA 1103
+G S++ S +R R R NTPDS++ NLGFRCA+
Sbjct: 259 LRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAS 299
>ref|XP_003086548.1| PREDICTED: sulfatase-modifying factor 2-like isoform 2 [Mus
musculus].
Length = 190
Score = 198 bits (503), Expect = 1e-50
Identities = 95/196 (48%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Frame = +3
Query: 528 AAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSC 707
A WW PV A WR P GP S + + + PV+HVSWNDA AYC W G+RLPTE EWE++
Sbjct: 3 AVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAA 62
Query: 708 RGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNI 884
RGGL+ +++PWGN+ QP + N+WQG+FP + EDGF G +PV+AFPP N YGLY++
Sbjct: 63 RGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDL 119
Query: 885 VGNAWEWTSDWWTIHHAAEETINPRGPPSGKD-RVKKGGSYM--CHKSYCYRYRCAARSQ 1055
+GN WEWT+ + P+G+D RV +G S++ S +R R R
Sbjct: 120 MGNVWEWTASTY--------------QPAGQDMRVLRGASWIDTADGSANHRARVTTRMG 165
Query: 1056 NTPDSSASNLGFRCAA 1103
NTPDS++ NLGFRCA+
Sbjct: 166 NTPDSASDNLGFRCAS 181
>ref|XP_003086549.1| PREDICTED: sulfatase-modifying factor 2-like isoform 3 [Mus
musculus].
Length = 190
Score = 198 bits (503), Expect = 1e-50
Identities = 95/196 (48%), Positives = 127/196 (64%), Gaps = 4/196 (2%)
Frame = +3
Query: 528 AAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSC 707
A WW PV A WR P GP S + + + PV+HVSWNDA AYC W G+RLPTE EWE++
Sbjct: 3 AVHWWQPVPKAFWRQPAGPGSGIREKLELPVVHVSWNDAGAYCAWRGRRLPTEEEWEFAA 62
Query: 708 RGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNI 884
RGGL+ +++PWGN+ QP + N+WQG+FP + EDGF G +PV+AFPP N YGLY++
Sbjct: 63 RGGLKGQVYPWGNRFQP---NRTNLWQGKFPKGDKAEDGFHGLSPVNAFPPQNNYGLYDL 119
Query: 885 VGNAWEWTSDWWTIHHAAEETINPRGPPSGKD-RVKKGGSYM--CHKSYCYRYRCAARSQ 1055
+GN WEWT+ + P+G+D RV +G S++ S +R R R
Sbjct: 120 MGNVWEWTASTY--------------QPAGQDMRVLRGASWIDTADGSANHRARVTTRMG 165
Query: 1056 NTPDSSASNLGFRCAA 1103
NTPDS++ NLGFRCA+
Sbjct: 166 NTPDSASDNLGFRCAS 181
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,161,788
Number of extensions: 1232122
Number of successful extensions: 3279
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3258
Number of HSP's successfully gapped: 5
Length of query: 478
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 373
Effective length of database: 12,463,779
Effective search space: 4648989567
Effective search space used: 4648989567
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precurso... 617 e-177
Alignment gi|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precu... 563 e-160
Alignment gi|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precu... 561 e-160
Alignment gi|NP_056226.2| sulfatase-modifying factor 2 isoform b precurso... 272 6e-73
Alignment gi|NP_001035934.2| sulfatase-modifying factor 2 isoform c precu... 243 2e-64
Alignment gi|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo... 224 2e-58
Alignment gi|NP_001123541.1| sulfatase-modifying factor 2 isoform e precu... 219 4e-57
Alignment gi|NP_001035935.2| sulfatase-modifying factor 2 isoform d precu... 89 1e-17
>ref|NP_877437.2| sulfatase-modifying factor 1 isoform 1 precursor [Homo sapiens].
Length = 374
Score = 617 bits (1591), Expect = e-177
Identities = 278/301 (92%), Positives = 291/301 (96%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SN EFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK++IQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHP 191
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 192 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 251
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 311
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
EET+NP+GPPSGKDRVKKGGSYMCH+SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 312 VEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 371
Query: 1116 T 1118
T
Sbjct: 372 T 372
>ref|NP_001158147.1| sulfatase-modifying factor 1 isoform 3 precursor [Homo sapiens].
Length = 354
Score = 563 bits (1451), Expect = e-160
Identities = 260/301 (86%), Positives = 271/301 (90%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SN EFEKFVNSTGYLTEAEKFGDSFVFEG+LS+QVK++IQQAVAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQQAVAAAPWWLPVKGANWRHP 191
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 192 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 251
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 252 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 311
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
EET+NP SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 312 VEETLNP--------------------SYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 351
Query: 1116 T 1118
T
Sbjct: 352 T 352
>ref|NP_001158146.1| sulfatase-modifying factor 1 isoform 2 precursor [Homo sapiens].
Length = 349
Score = 561 bits (1447), Expect = e-160
Identities = 257/301 (85%), Positives = 266/301 (88%)
Frame = +3
Query: 216 REANAPGPVPRERQFPLTKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEV 395
REANAPGPVP ERQ +KMVPIPAGVFTMGTDDPQIKQDGEAPARRV IDAFYMDAYEV
Sbjct: 72 REANAPGPVPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEV 131
Query: 396 SNAEFEKFVNSTGYLTEAEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHP 575
SN EFEKFVNSTGYLTE VAAAPWWLPVKGANWRHP
Sbjct: 132 SNTEFEKFVNSTGYLTE-------------------------VAAAPWWLPVKGANWRHP 166
Query: 576 EGPDSTVVHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQ 755
EGPDST++HRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGL NRLFPWGNKLQ
Sbjct: 167 EGPDSTILHRPDHPVLHVSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQ 226
Query: 756 PKGQHYANIWQGEFPVTNTGEDGFRGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTIHHA 935
PKGQHYANIWQGEFPVTNTGEDGF+GTAPVDAFPPNGYGLYNIVGNAWEWTSDWWT+HH+
Sbjct: 227 PKGQHYANIWQGEFPVTNTGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHS 286
Query: 936 AEETINPRGPPSGKDRVKKGGSYMCHKSYCYRYRCAARSQNTPDSSASNLGFRCAADHQP 1115
EET+NP+GPPSGKDRVKKGGSYMCH+SYCYRYRCAARSQNTPDSSASNLGFRCAAD P
Sbjct: 287 VEETLNPKGPPSGKDRVKKGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLP 346
Query: 1116 T 1118
T
Sbjct: 347 T 347
>ref|NP_056226.2| sulfatase-modifying factor 2 isoform b precursor [Homo sapiens].
Length = 320
Score = 272 bits (695), Expect = 6e-73
Identities = 136/283 (48%), Positives = 180/283 (63%), Gaps = 3/283 (1%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLH 165
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 166 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 222
Query: 807 NTGEDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDR 983
+ EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + R
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------R 269
Query: 984 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1106
V +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 270 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 312
>ref|NP_001035934.2| sulfatase-modifying factor 2 isoform c precursor [Homo sapiens].
Length = 305
Score = 243 bits (621), Expect = 2e-64
Identities = 130/283 (45%), Positives = 172/283 (60%), Gaps = 3/283 (1%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE +SD++++ Q P+K P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQ---------PMK------PAGPGSGIRERLEHPVLH 150
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 151 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 207
Query: 807 NTGEDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDR 983
+ EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + R
Sbjct: 208 DKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------R 254
Query: 984 VKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1106
V +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 255 VLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 297
>ref|NP_001139805.1| sulfatase-modifying factor 2 isoform g [Homo sapiens].
Length = 213
Score = 224 bits (571), Expect = 2e-58
Identities = 110/220 (50%), Positives = 146/220 (66%), Gaps = 3/220 (1%)
Frame = +3
Query: 456 FGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLHVSW 635
FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLHVSW
Sbjct: 2 FGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLHVSW 61
Query: 636 NDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVTNTG 815
NDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP +
Sbjct: 62 NDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKGDKA 118
Query: 816 EDGFRGTAPVDAFP-PNGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRGPPSGKDRVKK 992
EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ + RV +
Sbjct: 119 EDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM----------RVLR 165
Query: 993 GGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1106
G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 166 GASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 205
>ref|NP_001123541.1| sulfatase-modifying factor 2 isoform e precursor [Homo sapiens].
Length = 358
Score = 219 bits (559), Expect = 4e-57
Identities = 103/203 (50%), Positives = 133/203 (65%), Gaps = 1/203 (0%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQAVAAAPWWLPVKGANWRHPEGPDSTVVHRPDHPVLH 626
AE FG SFVFE +SD++++ Q + + WWLPV+ A WR P GP S + R +HPVLH
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQPMKSVLWWLPVEKAFWRQPAGPGSGIRERLEHPVLH 165
Query: 627 VSWNDAVAYCTWAGKRLPTEAEWEYSCRGGLQNRLFPWGNKLQPKGQHYANIWQGEFPVT 806
VSWNDA AYC W GKRLPTE EWE++ RGGL+ +++PWGN QP + N+WQG+FP
Sbjct: 166 VSWNDARAYCAWRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKG 222
Query: 807 NTGEDGFRGTAPVDAFP-PNGYG 872
+ EDGF G +PV+AFP N YG
Sbjct: 223 DKAEDGFHGVSPVNAFPAQNNYG 245
>ref|NP_001035935.2| sulfatase-modifying factor 2 isoform d precursor [Homo sapiens].
Length = 236
Score = 88.6 bits (218), Expect = 1e-17
Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 3/110 (2%)
Frame = +3
Query: 786 QGEFPVTNTGEDGFRGTAPVDAFPP-NGYGLYNIVGNAWEWTSDWWTIHHAAEETINPRG 962
+G+FP + EDGF G +PV+AFP N YGLY+++GN WEWT+ + + AAE+ +
Sbjct: 132 KGKFPKGDKAEDGFHGVSPVNAFPAQNNYGLYDLLGNVWEWTA---SPYQAAEQDM---- 184
Query: 963 PPSGKDRVKKGGSYM--CHKSYCYRYRCAARSQNTPDSSASNLGFRCAAD 1106
RV +G S++ S +R R R NTPDS++ NLGFRCAAD
Sbjct: 185 ------RVLRGASWIDTADGSANHRARVTTRMGNTPDSASDNLGFRCAAD 228
Score = 72.0 bits (175), Expect = 1e-12
Identities = 36/84 (42%), Positives = 49/84 (58%)
Frame = +3
Query: 267 TKMVPIPAGVFTMGTDDPQIKQDGEAPARRVAIDAFYMDAYEVSNAEFEKFVNSTGYLTE 446
T MV + G F MGT+ P +DGE P R + F +D + V+N +F FV Y TE
Sbjct: 47 TSMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTE 105
Query: 447 AEKFGDSFVFEGILSDQVKSDIQQ 518
AE FG SFVFE +SD++++ Q
Sbjct: 106 AEMFGWSFVFEDFVSDELRNKATQ 129
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,454,599
Number of extensions: 1463842
Number of successful extensions: 3890
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 3875
Number of HSP's successfully gapped: 9
Length of query: 478
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 372
Effective length of database: 14,802,980
Effective search space: 5506708560
Effective search space used: 5506708560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008557
(1436 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 761 0.0
>Sscrofa_Chr13
|| Length = 218635234
Score = 761 bits (384), Expect = 0.0
Identities = 416/424 (98%), Gaps = 3/424 (0%)
Strand = Plus / Minus
Query: 1015 agtcctactgctacaggtaccgctgtgctgctcgaagccagaacacgccggacagctcgg 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256471 agtcctactgctacaggtaccgctgtgctgctcgaagccagaacacgccggacagctcgg 67256412
Query: 1075 cttcaaatctggggttccgctgtgcagctgaccaccagcccaccacaggctgagtcagga 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256411 cttcaaatctggggttccgctgtgcagctgaccaccagcccaccacaggctgagtcagga 67256352
Query: 1135 ggagtcttcccgaatccgagaagtcgtgtctaatgtgcatgcggcttccttcagaatgct 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256351 ggagtcttcccgaatccgagaagtcgtgtctaatgtgcatgcggcttccttcagaatgct 67256292
Query: 1195 gacccacctcgtggaagaatttccacatcaggtgggctacgtacctgcccgatggccaaa 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256291 gacccacctcgtggaagaatttccacatcaggtgggctacgtacctgcccgatggccaaa 67256232
Query: 1255 ggaactgtgttgtgagaccaaattgccgctgacctgcatcagcatgtgcgctttattgtg 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67256231 ggaactgtgttgtgagaccaaattgccgctgacctgcatcagcatgtgcgctttattgtg 67256172
Query: 1315 tgatgtatttttggagctcattgccatgttttatttttgagagtcttttaaaga-ggagg 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 67256171 tgatgtatttttggagctcattgccatgttttatttttgagagtcttttaaagagggagg 67256112
Query: 1374 aggtggnnaggca-cctgagctangtttcagtaggcctgtgttctaccnagctctgccca 1432
|||||| |||| ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 67256111 aggtggag-ggcaccctgagctaggtttcagtaggcctgtgttctaccaggctctgccca 67256053
Query: 1433 gggg 1436
||||
Sbjct: 67256052 gggg 67256049
Score = 531 bits (268), Expect = e-148
Identities = 271/272 (99%)
Strand = Plus / Minus
Query: 1 acatggctgcgcccgcgctagggccagctcaaggaagcttcgctggactcggtctcgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345906 acatggctgcgcccgcgctagggccagctcaaggaagcttcgctggactcggtctcgtcc 67345847
Query: 61 ttttgctgccgctgctcttgctgctgggcggagtggcaggaggcgaagaagccgaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345846 ttttgctgccgctgctcttgctgctgggcggagtggcaggaggcgaagaagccgaggctg 67345787
Query: 121 gggctggtgcggcgtccttcgcgggctcgtgcggttgtggcgctccccagcggcacgggg 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345786 gggctggtgcggcgtccctcgcgggctcgtgcggttgtggcgctccccagcggcacgggg 67345727
Query: 181 cctatggcagctcagcggccgcgcagcagtactcgcgggaggcgaacgccccgggcccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67345726 cctatggcagctcagcggccgcgcagcagtactcgcgggaggcgaacgccccgggcccgg 67345667
Query: 241 tccctagagagcggcagttcccgctcacgaag 272
||||||||||||||||||||||||||||||||
Sbjct: 67345666 tccctagagagcggcagttcccgctcacgaag 67345635
Score = 351 bits (177), Expect = 7e-94
Identities = 177/177 (100%)
Strand = Plus / Minus
Query: 271 agatggtccccatccctgccggagtctttacaatgggcacagatgatcctcagataaagc 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67331112 agatggtccccatccctgccggagtctttacaatgggcacagatgatcctcagataaagc 67331053
Query: 331 aggatggggaagcacctgcgaggagagttgctattgatgccttttacatggatgcctatg 390
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67331052 aggatggggaagcacctgcgaggagagttgctattgatgccttttacatggatgcctatg 67330993
Query: 391 aagtcagtaatgctgaatttgagaagtttgtgaactcaactggctatttgacagagg 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67330992 aagtcagtaatgctgaatttgagaagtttgtgaactcaactggctatttgacagagg 67330936
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 602 caggccagatcacccagttctccacgtctcctggaacgatgccgtggcgtactgcacttg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67302254 caggccagatcacccagttctccacgtctcctggaacgatgccgtggcgtactgcacttg 67302195
Query: 662 ggcagggaagcggttgcccacggaagctgagtgggaatatagctgtcgaggaggcctgca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67302194 ggcagggaagcggttgcccacggaagctgagtgggaatatagctgtcgaggaggcctgca 67302135
Query: 722 aaatag 727
||||||
Sbjct: 67302134 aaatag 67302129
Score = 228 bits (115), Expect = 7e-57
Identities = 118/119 (99%)
Strand = Plus / Minus
Query: 726 agacttttcccctggggcaacaaactgcagccaaaagggcaacattatgccaacatttgg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67301371 agacttttcccctggggcaacaaactgcagccaaaagggcaacattatgccaacatttgg 67301312
Query: 786 cagggcgagtttcctgtgaccaacaccggagaggacggcttccgaggaactgcgcctgt 844
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 67301311 cagggcgagtttcctgtgaccaacaccggagaggatggcttccgaggaactgcgcctgt 67301253
Score = 218 bits (110), Expect = 6e-54
Identities = 113/114 (99%)
Strand = Plus / Minus
Query: 843 gttgacgcctttcctcccaatggttatggcctttacaatatagtagggaacgcctgggaa 902
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67295588 gttgatgcctttcctcccaatggttatggcctttacaatatagtagggaacgcctgggaa 67295529
Query: 903 tggacctcagactggtggaccattcaccatgctgctgaagaaacaattaaccca 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67295528 tggacctcagactggtggaccattcaccatgctgctgaagaaacaattaaccca 67295475
Score = 167 bits (84), Expect = 2e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 522 gttgcagctgctccctggtggttacctgttaaaggcgctaactggagacacccagaaggg 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67304745 gttgcagctgctccctggtggttacctgttaaaggcgctaactggagacacccagaaggg 67304686
Query: 582 ccggactctactgttgtacacagg 605
||||||||||||||||||||||||
Sbjct: 67304685 ccggactctactgttgtacacagg 67304662
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 445 aggctgagaagtttggtgactcctttgtctttgaaggcatattgagtgaccaagtgaagt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67327548 aggctgagaagtttggtgactcctttgtctttgaaggcatattgagtgaccaagtgaagt 67327489
Query: 505 ctgatatccaacaggcagt 523
|||||||||||||||||||
Sbjct: 67327488 ctgatatccaacaggcagt 67327470
Score = 115 bits (58), Expect = 7e-23
Identities = 58/58 (100%)
Strand = Plus / Minus
Query: 959 aggccccccttctgggaaagaccgggtgaagaaagggggatcctatatgtgccataag 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67266382 aggccccccttctgggaaagaccgggtgaagaaagggggatcctatatgtgccataag 67266325
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,779,682
Number of extensions: 209
Number of successful extensions: 209
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 9
Length of query: 1436
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1415
Effective length of database: 2,808,413,156
Effective search space: 3973904615740
Effective search space used: 3973904615740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)