Animal-Genome cDNA 20110601C-008562


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001069564.2| mitogen-activated protein kinase 8 interacti...   422   e-118
Alignment   gi|XP_002697963.1| PREDICTED: mitogen-activated protein kinase ...   422   e-118
Alignment   gi|XP_002697962.1| PREDICTED: mitogen-activated protein kinase ...   422   e-118
Alignment   gi|XP_001789892.1| PREDICTED: mitogen-activated protein kinase ...   422   e-118
Alignment   gi|XP_001789891.1| PREDICTED: mitogen-activated protein kinase ...   422   e-118

>ref|NP_001069564.2| mitogen-activated protein kinase 8 interacting protein 3 [Bos
           taurus].
          Length = 1328

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248


>ref|XP_002697963.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
           isoform 2 [Bos taurus].
          Length = 1334

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248


>ref|XP_002697962.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
           isoform 1 [Bos taurus].
          Length = 1328

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248


>ref|XP_001789892.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
           isoform 2 [Bos taurus].
          Length = 1334

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248


>ref|XP_001789891.1| PREDICTED: mitogen-activated protein kinase 8 interacting protein 3
           isoform 1 [Bos taurus].
          Length = 1328

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREK+LRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSL+VFPLADG VRAQ GGK VPAGDHWHLSDLGQLQLS+SYQ
Sbjct: 193 TEGSLPGR-RKERPTSLSVFPLADGSVRAQMGGKPVPAGDHWHLSDLGQLQLSSSYQ 248


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,541,448
Number of extensions: 1135074
Number of successful extensions: 6519
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6436
Number of HSP's successfully gapped: 5
Length of query: 361
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 258
Effective length of database: 14,273,310
Effective search space: 3682513980
Effective search space used: 3682513980
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852670.1| PREDICTED: similar to sperm associated antigen ...   290   1e-78
Alignment   gi|XP_865997.1| PREDICTED: similar to sperm associated antigen ...   290   1e-78
Alignment   gi|XP_866118.1| PREDICTED: similar to sperm associated antigen ...   288   8e-78
Alignment   gi|XP_866099.1| PREDICTED: similar to sperm associated antigen ...   288   8e-78
Alignment   gi|XP_537679.2| PREDICTED: similar to sperm associated antigen ...   288   8e-78
Alignment   gi|XP_866012.1| PREDICTED: similar to sperm associated antigen ...   288   8e-78
Alignment   gi|XP_865969.1| PREDICTED: similar to sperm associated antigen ...   288   8e-78

>ref|XP_852670.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           2 [Canis familiaris].
          Length = 1320

 Score =  290 bits (743), Expect = 1e-78
 Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q +   S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245

Query: 885 YQVS 896
            +VS
Sbjct: 246 LKVS 249


>ref|XP_865997.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           5 [Canis familiaris].
          Length = 944

 Score =  290 bits (743), Expect = 1e-78
 Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q +   S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245

Query: 885 YQVS 896
            +VS
Sbjct: 246 LKVS 249


>ref|XP_866118.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           12 [Canis familiaris].
          Length = 1320

 Score =  288 bits (736), Expect = 8e-78
 Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


>ref|XP_866099.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           11 [Canis familiaris].
          Length = 1310

 Score =  288 bits (736), Expect = 8e-78
 Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


>ref|XP_537679.2| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           1 [Canis familiaris].
          Length = 1311

 Score =  288 bits (736), Expect = 8e-78
 Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


>ref|XP_866012.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           6 [Canis familiaris].
          Length = 930

 Score =  288 bits (736), Expect = 8e-78
 Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


>ref|XP_865969.1| PREDICTED: similar to sperm associated antigen 9 isoform 1 isoform
           3 [Canis familiaris].
          Length = 1306

 Score =  288 bits (736), Expect = 8e-78
 Identities = 154/234 (65%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV +LENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 33,134,845
Number of extensions: 1003961
Number of successful extensions: 7111
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 7006
Number of HSP's successfully gapped: 7
Length of query: 361
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 257
Effective length of database: 15,407,560
Effective search space: 3959742920
Effective search space used: 3959742920
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_003354707.1| PREDICTED: c-Jun-amino-terminal kinase-inter...   436   e-122
Alignment   gi|XP_003124802.2| PREDICTED: c-Jun-amino-terminal kinase-inter...   436   e-122
Alignment   gi|XP_003131645.2| PREDICTED: c-Jun-amino-terminal kinase-inter...   290   1e-78

>ref|XP_003354707.1| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3
           isoform 2 [Sus scrofa].
          Length = 1329

 Score =  436 bits (1121), Expect = e-122
 Identities = 223/237 (94%), Positives = 223/237 (94%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ
Sbjct: 193 TEGSLPGR-RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 248


>ref|XP_003124802.2| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 3
           isoform 1 [Sus scrofa].
          Length = 1335

 Score =  436 bits (1121), Expect = e-122
 Identities = 223/237 (94%), Positives = 223/237 (94%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TEGSLPGR RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ
Sbjct: 193 TEGSLPGR-RKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 248


>ref|XP_003131645.2| PREDICTED: c-Jun-amino-terminal kinase-interacting protein 4-like
           [Sus scrofa].
          Length = 252

 Score =  290 bits (742), Expect = 1e-78
 Identities = 157/244 (64%), Positives = 186/244 (76%), Gaps = 5/244 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
           Q E +   R RKERP SL +FPL   +G++    Q GG+  P  + W   +L Q +   S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGEGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245

Query: 885 YQVS 896
            +VS
Sbjct: 246 LKVS 249


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,596,533
Number of extensions: 992211
Number of successful extensions: 4169
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4119
Number of HSP's successfully gapped: 3
Length of query: 361
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,854,232
Effective search space: 2310954552
Effective search space used: 2310954552
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001156920.1| C-Jun-amino-terminal kinase-interacting prot...   430   e-120
Alignment   gi|NP_038959.2| C-Jun-amino-terminal kinase-interacting protein...   430   e-120
Alignment   gi|NP_001156919.1| C-Jun-amino-terminal kinase-interacting prot...   424   e-119
Alignment   gi|NP_001156925.1| C-Jun-amino-terminal kinase-interacting prot...   372   e-103
Alignment   gi|NP_001156922.1| C-Jun-amino-terminal kinase-interacting prot...   372   e-103
Alignment   gi|NP_001156923.1| C-Jun-amino-terminal kinase-interacting prot...   366   e-101
Alignment   gi|NP_001156921.1| C-Jun-amino-terminal kinase-interacting prot...   365   e-101
Alignment   gi|NP_001186132.1| C-Jun-amino-terminal kinase-interacting prot...   292   3e-79
Alignment   gi|NP_001186133.1| C-Jun-amino-terminal kinase-interacting prot...   289   3e-78
Alignment   gi|NP_081845.2| C-Jun-amino-terminal kinase-interacting protein...   289   3e-78

>ref|NP_001156920.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform c [Mus
           musculus].
          Length = 1322

 Score =  430 bits (1105), Expect = e-120
 Identities = 218/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TE SLPGRSRKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 249


>ref|NP_038959.2| C-Jun-amino-terminal kinase-interacting protein 3 isoform a [Mus
           musculus].
          Length = 1337

 Score =  430 bits (1105), Expect = e-120
 Identities = 218/237 (91%), Positives = 220/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TE SLPGRSRKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 249


>ref|NP_001156919.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform b [Mus
           musculus].
          Length = 1336

 Score =  424 bits (1089), Expect = e-119
 Identities = 217/237 (91%), Positives = 219/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TE SLPGR RKERPTSLNVFPLADGMVRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGMVRAQMGGKLVPAGDHWHLSDLGQLQSSSSYQ 248


>ref|NP_001156925.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform g [Mus
           musculus].
          Length = 1300

 Score =  372 bits (956), Expect = e-103
 Identities = 190/206 (92%), Positives = 191/206 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
           TE SLPGRSRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGM 218


>ref|NP_001156922.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform e [Mus
           musculus].
          Length = 1306

 Score =  372 bits (956), Expect = e-103
 Identities = 190/206 (92%), Positives = 191/206 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
           TE SLPGRSRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSRKERPTSLNVFPLADGM 218


>ref|NP_001156923.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform f [Mus
           musculus].
          Length = 1305

 Score =  366 bits (940), Expect = e-101
 Identities = 189/206 (91%), Positives = 190/206 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGM 797
           TE SLPGR RKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGM 217


>ref|NP_001156921.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform d [Mus
           musculus].
          Length = 1314

 Score =  365 bits (937), Expect = e-101
 Identities = 190/214 (88%), Positives = 191/214 (89%), Gaps = 8/214 (3%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGG+ Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQ 192

Query: 720 TEGSLPGR--------SRKERPTSLNVFPLADGM 797
           TE SLPGR        SRKERPTSLNVFPLADGM
Sbjct: 193 TESSLPGRSPRQSWRKSRKERPTSLNVFPLADGM 226


>ref|NP_001186132.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 5 [Mus
           musculus].
          Length = 1321

 Score =  292 bits (748), Expect = 3e-79
 Identities = 162/258 (62%), Positives = 190/258 (73%), Gaps = 5/258 (1%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q +   S
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQPRSHTS 245

Query: 885 YQVS*PCCGVRAFSPSPL 938
            +VS         SP PL
Sbjct: 246 LKVS--------HSPEPL 255


>ref|NP_001186133.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 6 [Mus
           musculus].
          Length = 1320

 Score =  289 bits (739), Expect = 3e-78
 Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


>ref|NP_081845.2| C-Jun-amino-terminal kinase-interacting protein 4 isoform 1 [Mus
           musculus].
          Length = 1307

 Score =  289 bits (739), Expect = 3e-78
 Identities = 155/234 (66%), Positives = 181/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++    Q GG+  P  + W   +L Q
Sbjct: 187 QLEATAHSRIRKERPISLGIFPLPAGDGLLTPDTQKGGE-TPGSEQWKFQELSQ 239


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,025,047
Number of extensions: 786141
Number of successful extensions: 5012
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 4873
Number of HSP's successfully gapped: 10
Length of query: 361
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 258
Effective length of database: 12,523,851
Effective search space: 3231153558
Effective search space used: 3231153558
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001035529.1| C-Jun-amino-terminal kinase-interacting prot...   422   e-118
Alignment   gi|NP_055948.2| C-Jun-amino-terminal kinase-interacting protein...   422   e-118
Alignment   gi|NP_001124000.1| C-Jun-amino-terminal kinase-interacting prot...   293   2e-79
Alignment   gi|NP_003962.3| C-Jun-amino-terminal kinase-interacting protein...   290   1e-78

>ref|NP_001035529.1| C-Jun-amino-terminal kinase-interacting protein 3 isoform 2 [Homo
           sapiens].
          Length = 1330

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 219/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALR+QAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TE SLPGR RKERPTSLNVFPLADG VRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGTVRAQIGGKLVPAGDHWHLSDLGQLQSSSSYQ 248


>ref|NP_055948.2| C-Jun-amino-terminal kinase-interacting protein 3 isoform 1 [Homo
           sapiens].
          Length = 1336

 Score =  422 bits (1086), Expect = e-118
 Identities = 216/237 (91%), Positives = 219/237 (92%)
 Frame = +3

Query: 180 VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 359
           VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE
Sbjct: 13  VVYQDDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSE 72

Query: 360 NQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEFQ 539
           NQEHEVELELLREDNEQLLTQYEREKALR+QAEEKFIEFEDA             HYEFQ
Sbjct: 73  NQEHEVELELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQEKKELQIQVEHYEFQ 132

Query: 540 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNNQ 719
           TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGN+Q
Sbjct: 133 TRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQ 192

Query: 720 TEGSLPGRSRKERPTSLNVFPLADGMVRAQTGGKLVPAGDHWHLSDLGQLQLSASYQ 890
           TE SLPGR RKERPTSLNVFPLADG VRAQ GGKLVPAGDHWHLSDLGQLQ S+SYQ
Sbjct: 193 TESSLPGR-RKERPTSLNVFPLADGTVRAQIGGKLVPAGDHWHLSDLGQLQSSSSYQ 248


>ref|NP_001124000.1| C-Jun-amino-terminal kinase-interacting protein 4 isoform 1 [Homo
           sapiens].
          Length = 1321

 Score =  293 bits (750), Expect = 2e-79
 Identities = 159/244 (65%), Positives = 187/244 (76%), Gaps = 5/244 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQLQLSAS 884
           Q E +   R RKERP SL +FPL   DG++   AQ GG+  P  + W   +L Q +   S
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDAQKGGE-TPGSEQWKFQELSQPRSHTS 245

Query: 885 YQVS 896
            +VS
Sbjct: 246 LKVS 249


>ref|NP_003962.3| C-Jun-amino-terminal kinase-interacting protein 4 isoform 3 [Homo
           sapiens].
          Length = 1307

 Score =  290 bits (743), Expect = 1e-78
 Identities = 156/234 (66%), Positives = 182/234 (77%), Gaps = 5/234 (2%)
 Frame = +3

Query: 180 VVYQDDYC-SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLS 356
           VVYQ++   SG+VMSERVSGLAGSIYREFERLI  YDEEVVKELMPLVV VLENLDSV +
Sbjct: 7   VVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLENLDSVFA 66

Query: 357 ENQEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDAXXXXXXXXXXXXXHYEF 536
           ++QEH+VELELLR+DNEQL+TQYEREKALRK AEEKFIEFED+               E 
Sbjct: 67  QDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTRVESLES 126

Query: 537 QTRQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNN 716
           QTRQLELKAKNYADQISRLEERE+E+KKEYNALHQRHTEMI  Y+EH+ER+K+ Q+ G++
Sbjct: 127 QTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLHQLSGSD 186

Query: 717 QTEGSLPGRSRKERPTSLNVFPL--ADGMVR--AQTGGKLVPAGDHWHLSDLGQ 866
           Q E +   R RKERP SL +FPL   DG++   AQ GG+  P  + W   +L Q
Sbjct: 187 QLESTAHSRIRKERPISLGIFPLPAGDGLLTPDAQKGGE-TPGSEQWKFQELSQ 239


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,192,557
Number of extensions: 948174
Number of successful extensions: 6110
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6014
Number of HSP's successfully gapped: 4
Length of query: 361
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 257
Effective length of database: 14,868,908
Effective search space: 3821309356
Effective search space used: 3821309356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008562
         (1085 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr03                                                         565   e-158
Sscrofa_Chr12                                                         190   1e-45

>Sscrofa_Chr03 
||          Length = 144787322

 Score =  565 bits (285), Expect = e-158
 Identities = 326/342 (95%)
 Strand = Plus / Minus

                                                                            
Query: 744      agcaggaaggaacggcccacttccctgaatgtcttccccctggcggacggcatggtacgt 803
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41682448 agcaggaaggaacggcccacttccctgaatgtcttccccctggcggacggcatggtacgt 41682389

                                                                            
Query: 804      gcccagacggggggcaagctcgtgcctgcgggggaccactggcacctgagcgacctcggc 863
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41682388 gcccagacggggggcaagctcgtgcctgcgggggaccactggcacctgagcgacctcggc 41682329

                                                                            
Query: 864      cagctgcagctcagcgccagctaccaggtttcgtagccgtgctgtggagtgagggccttt 923
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 41682328 cagctgcagctcagcgccagctaccaggtttcgtagccgtgctgtggagtgagggccttc 41682269

                                                                            
Query: 924      tccccgtcgcccctcgctcacccggggagcccaggcttagcagcttccccccattagtgg 983
                ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 41682268 tccccgtcgcccctcgctcacccggggagcccaggcttagcagcttcccccaattagtgg 41682209

                                                                            
Query: 984      acctgtcccgaggtgtgaccgcaatggagacccgggagcaacgcnnnnnnncaaaggcgc 1043
                ||||||||||||||||||||||| |||||||||||||||| |||       ||| | |||
Sbjct: 41682208 acctgtcccgaggtgtgaccgcagtggagacccgggagcagcgcgggagggcaaggccgc 41682149

                                                          
Query: 1044     aagccgggtgctgctgctcaggctccattcgtccagcccggc 1085
                | || ||||||||||||||||||||||||||||||| |||||
Sbjct: 41682148 aggcggggtgctgctgctcaggctccattcgtccaggccggc 41682107



 Score =  563 bits (284), Expect = e-158
 Identities = 284/284 (100%)
 Strand = Plus / Minus

                                                                            
Query: 178      tggtcgtgtaccaggatgactactgctccggctcggtgatgtcggagcgggtgtcgggcc 237
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705412 tggtcgtgtaccaggatgactactgctccggctcggtgatgtcggagcgggtgtcgggcc 41705353

                                                                            
Query: 238      tggcgggctccatctaccgcgagttcgagcgcctcatccactgctatgacgaggaggtgg 297
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705352 tggcgggctccatctaccgcgagttcgagcgcctcatccactgctatgacgaggaggtgg 41705293

                                                                            
Query: 298      tcaaagagcttatgccgctcgtggtcaacgtgctcgagaacctggactccgtgctcagcg 357
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705292 tcaaagagcttatgccgctcgtggtcaacgtgctcgagaacctggactccgtgctcagcg 41705233

                                                                            
Query: 358      agaaccaggagcacgaggtggagctggagctactgcgcgaggacaacgaacagctgctca 417
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705232 agaaccaggagcacgaggtggagctggagctactgcgcgaggacaacgaacagctgctca 41705173

                                                            
Query: 418      cccagtacgagcgggagaaggctctgcgcaagcaggccgaagag 461
                ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41705172 cccagtacgagcgggagaaggctctgcgcaagcaggccgaagag 41705129



 Score =  244 bits (123), Expect = 8e-62
 Identities = 123/123 (100%)
 Strand = Plus / Minus

                                                                            
Query: 460      agaaattcatcgagttcgaagatgccttggagcaggagaagaaggagctccaagtccagg 519
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690637 agaaattcatcgagttcgaagatgccttggagcaggagaagaaggagctccaagtccagg 41690578

                                                                            
Query: 520      tggagcactatgagtttcagacccgccagctggagctgaaggccaaaaactatgcagacc 579
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41690577 tggagcactatgagtttcagacccgccagctggagctgaaggccaaaaactatgcagacc 41690518

                   
Query: 580      aga 582
                |||
Sbjct: 41690517 aga 41690515



 Score =  186 bits (94), Expect = 2e-44
 Identities = 94/94 (100%)
 Strand = Plus / Minus

                                                                            
Query: 652      agatgatccagacctacgtggagcacatcgagaggtccaagatgcagcaggtcgggggca 711
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41688022 agatgatccagacctacgtggagcacatcgagaggtccaagatgcagcaggtcgggggca 41687963

                                                  
Query: 712      acaaccagacggagggcagcctgcccgggcggag 745
                ||||||||||||||||||||||||||||||||||
Sbjct: 41687962 acaaccagacggagggcagcctgcccgggcggag 41687929



 Score =  141 bits (71), Expect = 9e-31
 Identities = 71/71 (100%)
 Strand = Plus / Minus

                                                                            
Query: 583      tttcccggctggaggagcgggagtcggagatgaagaaggagtacaacgccctgcaccagc 642
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41688172 tttcccggctggaggagcgggagtcggagatgaagaaggagtacaacgccctgcaccagc 41688113

                           
Query: 643      ggcacacggag 653
                |||||||||||
Sbjct: 41688112 ggcacacggag 41688102


>Sscrofa_Chr12 
||          Length = 63588571

 Score =  190 bits (96), Expect = 1e-45
 Identities = 206/240 (85%), Gaps = 2/240 (0%)
 Strand = Plus / Minus

                                                                            
Query: 213      gtgatgtcggagcgggtgtcgggcctggcgggctccatctaccgcgagttcgagcgcctc 272
                |||||||| ||| ||||||| |||||||| |||||||||||||||||||||||| | |||
Sbjct: 27437873 gtgatgtctgagagggtgtccggcctggccggctccatctaccgcgagttcgagaggctc 27437814

                                                                            
Query: 273      atccactgctatgacgaggaggtggtcaaagagcttatgccgctcgtggtcaacgtgctc 332
                |||    |||| ||||||||||||||||| ||||| ||||| || |||||   |||||| 
Sbjct: 27437813 atcgggcgctacgacgaggaggtggtcaaggagctgatgccactggtggtggccgtgctg 27437754

                                                                            
Query: 333      gagaacctggactccgtgctcagcg-agaaccaggagcacgaggtggagctggagctact 391
                |||||||||||||| ||| || ||| || | ||||||||| |||||||||||||||| ||
Sbjct: 27437753 gagaacctggactcggtgttc-gcgcaggatcaggagcaccaggtggagctggagctgct 27437695

                                                                            
Query: 392      gcgcgaggacaacgaacagctgctcacccagtacgagcgggagaaggctctgcgcaagca 451
                ||| || |||||||| |||||  |||||||||||||||| |||||||| |||||||||||
Sbjct: 27437694 gcgggacgacaacgagcagcttatcacccagtacgagcgagagaaggcgctgcgcaagca 27437635


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 18,330,621
Number of extensions: 83
Number of successful extensions: 83
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 7
Length of query: 1085
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1064
Effective length of database: 2,808,413,156
Effective search space: 2988151597984
Effective search space used: 2988151597984
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)