Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098829.1| pre-mRNA-splicing factor CWC25 homolog [Bos ... 231 2e-60
>ref|NP_001098829.1| pre-mRNA-splicing factor CWC25 homolog [Bos taurus].
Length = 166
Score = 231 bits (590), Expect = 2e-60
Identities = 116/142 (81%), Positives = 116/142 (81%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFII 614
PSGANSLLDMASKIREDPLFII
Sbjct: 121 PSGANSLLDMASKIREDPLFII 142
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 93,903,957
Number of extensions: 2635637
Number of successful extensions: 11442
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11317
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 17,681,374
Length adjustment: 111
Effective length of query: 748
Effective length of database: 14,008,606
Effective search space: 10478437288
Effective search space used: 10478437288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537657.1| PREDICTED: similar to CG2843-PA isoform 1 [Cani... 548 e-155
Alignment gi|XP_864330.1| PREDICTED: similar to CG2843-PA isoform 3 [Cani... 505 e-143
Alignment gi|XP_864309.1| PREDICTED: similar to CG2843-PA isoform 2 [Cani... 503 e-142
>ref|XP_537657.1| PREDICTED: similar to CG2843-PA isoform 1 [Canis familiaris].
Length = 420
Score = 548 bits (1411), Expect = e-155
Identities = 293/425 (68%), Positives = 309/425 (72%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFIIXXXXXXXXXXVLNNPVKMKKIKELLQMSLVXXXXXXXX 728
PSGANSLLDMASKIREDPLFII VLNNPVKMKKIKELLQMSL
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 180
Query: 729 XXXXXXXXHKHXXXXXXXXXXXXXXXXGRSQKKLANSSPVLAKVPGYGLQLRNSDRSQGP 908
HKH GRSQKKLA+SS VL+K GYGLQ+R+ SQG
Sbjct: 181 EKKKKHKKHKHRSSSSDGCSSEDERGRGRSQKKLADSSSVLSKASGYGLQIRDPCHSQGV 240
Query: 909 RGPPAAEQRAGHGLKNYXXXXXXXXXXXXHASKKSTREAXXXXXXXXXXXXXXXXXXXXK 1088
+ A+Q+ HGL+N+ HA+KKSTREA K
Sbjct: 241 QSSLMAKQKGMHGLRNHSRSRSSSHSPPRHANKKSTREAGSRDPGRRSRSPRPS-----K 295
Query: 1089 PHNSKVSRRDRGRTKSPSPKKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREAERL 1268
PHNSKV+RR+RGRTKSPSP+KEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWRE ERL
Sbjct: 296 PHNSKVNRRERGRTKSPSPRKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREEERL 355
Query: 1269 NILKRHAKDDEREQRLQKLDSRDGKFLHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK 1448
NILKRHAKDDE EQRL+KLDSRDGKF+HRMKLESASTSSLEDRVKRNIYSLQRTS+ALEK
Sbjct: 356 NILKRHAKDDEWEQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSIALEK 415
Query: 1449 NFMKR 1463
NFMKR
Sbjct: 416 NFMKR 420
>ref|XP_864330.1| PREDICTED: similar to CG2843-PA isoform 3 [Canis familiaris].
Length = 383
Score = 505 bits (1300), Expect = e-143
Identities = 280/425 (65%), Positives = 291/425 (68%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFIIXXXXXXXXXXVLNNPVKMKKIKELLQMSLVXXXXXXXX 728
PSGANSLLDMASKIREDPLFII VLNNPVKMKKIKELLQMSL
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 180
Query: 729 XXXXXXXXHKHXXXXXXXXXXXXXXXXGRSQKKLANSSPVLAKVPGYGLQLRNSDRSQGP 908
HKH GRSQKKLA+SS VL+K GYGLQ+ R +G
Sbjct: 181 EKKKKHKKHKHRSSSSDGCSSEDERGRGRSQKKLADSSSVLSKASGYGLQV----RMEGK 236
Query: 909 RGPPAAEQRAGHGLKNYXXXXXXXXXXXXHASKKSTREAXXXXXXXXXXXXXXXXXXXXK 1088
G P N+ HA+KKSTREA
Sbjct: 237 FGQPG----------NHSRSRSSSHSPPRHANKKSTREAG-------------------- 266
Query: 1089 PHNSKVSRRDRGRTKSPSPKKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREAERL 1268
R+RGRTKSPSP+KEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWRE ERL
Sbjct: 267 --------RERGRTKSPSPRKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREEERL 318
Query: 1269 NILKRHAKDDEREQRLQKLDSRDGKFLHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK 1448
NILKRHAKDDE EQRL+KLDSRDGKF+HRMKLESASTSSLEDRVKRNIYSLQRTS+ALEK
Sbjct: 319 NILKRHAKDDEWEQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSIALEK 378
Query: 1449 NFMKR 1463
NFMKR
Sbjct: 379 NFMKR 383
>ref|XP_864309.1| PREDICTED: similar to CG2843-PA isoform 2 [Canis familiaris].
Length = 391
Score = 503 bits (1295), Expect = e-142
Identities = 279/429 (65%), Positives = 292/429 (68%), Gaps = 4/429 (0%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFIIXXXXXXXXXXVLNNPVKMKKIKELLQMSLVXXXXXXXX 728
PSGANSLLDMASKIREDPLFII VLNNPVKMKKIKELLQMSL
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 180
Query: 729 XXXXXXXXHKHXXXXXXXXXXXXXXXXGR----SQKKLANSSPVLAKVPGYGLQLRNSDR 896
HKH G + KLA+SS VL+K GYGLQ+R+
Sbjct: 181 EKKKKHKKHKHRSSSSDGCSSEDERGRGSTHMWAHHKLADSSSVLSKASGYGLQIRDPCH 240
Query: 897 SQGPRGPPAAEQRAGHGLKNYXXXXXXXXXXXXHASKKSTREAXXXXXXXXXXXXXXXXX 1076
SQG HGL+N+ HA+KKSTREA
Sbjct: 241 SQG----------GMHGLRNHSRSRSSSHSPPRHANKKSTREAG---------------- 274
Query: 1077 XXXKPHNSKVSRRDRGRTKSPSPKKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWRE 1256
R+RGRTKSPSP+KEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWRE
Sbjct: 275 ------------RERGRTKSPSPRKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWRE 322
Query: 1257 AERLNILKRHAKDDEREQRLQKLDSRDGKFLHRMKLESASTSSLEDRVKRNIYSLQRTSV 1436
ERLNILKRHAKDDE EQRL+KLDSRDGKF+HRMKLESASTSSLEDRVKRNIYSLQRTS+
Sbjct: 323 EERLNILKRHAKDDEWEQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSI 382
Query: 1437 ALEKNFMKR 1463
ALEKNFMKR
Sbjct: 383 ALEKNFMKR 391
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 97,971,312
Number of extensions: 2664772
Number of successful extensions: 12196
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12074
Number of HSP's successfully gapped: 3
Length of query: 859
Length of database: 18,874,504
Length adjustment: 112
Effective length of query: 747
Effective length of database: 15,140,872
Effective search space: 11310231384
Effective search space used: 11310231384
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 61,143,132
Number of extensions: 1779486
Number of successful extensions: 7634
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 7513
Number of HSP's successfully gapped: 0
Length of query: 859
Length of database: 11,343,932
Length adjustment: 108
Effective length of query: 751
Effective length of database: 8,655,056
Effective search space: 6499947056
Effective search space used: 6499947056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080462.2| pre-mRNA-splicing factor CWC25 homolog [Mus mus... 513 e-145
>ref|NP_080462.2| pre-mRNA-splicing factor CWC25 homolog [Mus musculus].
Length = 416
Score = 513 bits (1321), Expect = e-145
Identities = 281/425 (66%), Positives = 301/425 (70%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEE+EAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEREAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFIIXXXXXXXXXXVLNNPVKMKKIKELLQMSLVXXXXXXXX 728
PSGANSLLDMASKIREDPLFII VLNNPVKMKKIKELLQMSL
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 180
Query: 729 XXXXXXXXHKHXXXXXXXXXXXXXXXXGRSQKKLANSSPVLAKVPGYGLQLRNSDRSQGP 908
HKH RSQKK+ANS PVL+KVPGYGLQ+R+SDR++G
Sbjct: 181 EKKKKHRKHKHRSSSSGGSSSEDEQSQARSQKKMANSFPVLSKVPGYGLQVRDSDRNRGL 240
Query: 909 RGPPAAEQRAGHGLKNYXXXXXXXXXXXXHASKKSTREAXXXXXXXXXXXXXXXXXXXXK 1088
+G EQRA +KN HASKKST+E K
Sbjct: 241 QG-SLGEQRA---IKN--NSRSRSSSPPRHASKKSTKEERPRDRRSRSPSRRSRSPRPSK 294
Query: 1089 PHNSKVSRRDRGRTKSPSPKKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREAERL 1268
PH SKV+R++R SPSPKKE YQRRHA GYTRKLS+EELERKRQEMMENAKWRE ERL
Sbjct: 295 PHTSKVNRKER---DSPSPKKEAYQRRHASGYTRKLSAEELERKRQEMMENAKWREEERL 351
Query: 1269 NILKRHAKDDEREQRLQKLDSRDGKFLHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK 1448
N LKRHA++DERE RL++LDSR GKFLHRMKLESASTSSLEDRVKRNI+SLQRTSVALEK
Sbjct: 352 NTLKRHAREDEREHRLERLDSRSGKFLHRMKLESASTSSLEDRVKRNIHSLQRTSVALEK 411
Query: 1449 NFMKR 1463
NFM+R
Sbjct: 412 NFMRR 416
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 80,842,412
Number of extensions: 2160807
Number of successful extensions: 9231
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9100
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 15,617,559
Length adjustment: 110
Effective length of query: 749
Effective length of database: 12,313,599
Effective search space: 9222885651
Effective search space used: 9222885651
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060218.1| pre-mRNA-splicing factor CWC25 homolog [Homo sa... 573 e-163
>ref|NP_060218.1| pre-mRNA-splicing factor CWC25 homolog [Homo sapiens].
Length = 425
Score = 573 bits (1477), Expect = e-163
Identities = 301/425 (70%), Positives = 317/425 (74%)
Frame = +3
Query: 189 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAXXXXXXXXXXXXXXXXXXXXXXXXXXDV 368
MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEA DV
Sbjct: 1 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV 60
Query: 369 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 548
GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
Sbjct: 61 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA 120
Query: 549 PSGANSLLDMASKIREDPLFIIXXXXXXXXXXVLNNPVKMKKIKELLQMSLVXXXXXXXX 728
PSGANSLLDMASKIREDPLFII VLNNPVKMKKIKELLQMSL
Sbjct: 121 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK 180
Query: 729 XXXXXXXXHKHXXXXXXXXXXXXXXXXGRSQKKLANSSPVLAKVPGYGLQLRNSDRSQGP 908
HKH GRSQKK+ANSSPVL+KVPGYGLQ+RNSDR+QG
Sbjct: 181 EKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQGL 240
Query: 909 RGPPAAEQRAGHGLKNYXXXXXXXXXXXXHASKKSTREAXXXXXXXXXXXXXXXXXXXXK 1088
+GP AEQ+ GHG+KN+ HASKKSTREA K
Sbjct: 241 QGPLTAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTREAGSRDRRSRSLGRRSRSPRPSK 300
Query: 1089 PHNSKVSRRDRGRTKSPSPKKEVYQRRHAPGYTRKLSSEELERKRQEMMENAKWREAERL 1268
HNSKV+RR+ G+T+SPSPKKEVYQRRHAPGYTRKLS+EELERKRQEMMENAKWRE ERL
Sbjct: 301 LHNSKVNRRETGQTRSPSPKKEVYQRRHAPGYTRKLSAEELERKRQEMMENAKWREEERL 360
Query: 1269 NILKRHAKDDEREQRLQKLDSRDGKFLHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK 1448
NILKRHAKD+EREQRL+KLDSRDGKF+HRMKLESASTSSLEDRVKRNIYSLQRTSVALEK
Sbjct: 361 NILKRHAKDEEREQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK 420
Query: 1449 NFMKR 1463
NFMKR
Sbjct: 421 NFMKR 425
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 95,807,737
Number of extensions: 2600484
Number of successful extensions: 11345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 11239
Number of HSP's successfully gapped: 1
Length of query: 859
Length of database: 18,297,164
Length adjustment: 111
Effective length of query: 748
Effective length of database: 14,638,160
Effective search space: 10949343680
Effective search space used: 10949343680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008576
(2577 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896426.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1725 0.0
>gb|GL896426.1| Sus scrofa unplaced genomic scaffold chrU_scaffold768
Length = 83148
Score = 1725 bits (870), Expect = 0.0
Identities = 934/966 (96%)
Strand = Plus / Minus
Query: 1352 ccgcatgaagctagagagcgcatctacctcctctctggaagatcgggtgaagcggaatat 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34583 ccgcatgaagctagagagcgcatctacctcctctctggaagatcgggtgaagcggaatat 34524
Query: 1412 ttattccctgcagaggacctcagtagctctggagaagaactttatgaaaagatgaaagcc 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34523 ttattccctgcagaggacctcagtagctctggagaagaactttatgaaaagatgaaagcc 34464
Query: 1472 atcgcctgtcttgctggttttcctgaagttttcagggaggctgctgaccccttacaaatt 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34463 atcgcctgtcttgctggttttcctgaagttttcagggaggctgctgaccccttacaaatt 34404
Query: 1532 ctctttataagagttcaaatggcttcttccacagatgtcaaaccaccactgttcaaagtg 1591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34403 ctctttataagagttcaaatggcttcttccacagatgtcaaaccaccactgttcaaagtg 34344
Query: 1592 actgtcccccgtggatcgcagaaacagcccatttcttttgagaacccgtgtgacttgctc 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34343 actgtcccccgtggatcgcagaaacagcccatttcttttgagaacccgtgtgacttgctc 34284
Query: 1652 tatgggaccctcggtaacttttgctgggtgcagagcagatgttaacnnnnnnnnnnnnnn 1711
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34283 tatgggaccctcggtaacttttgctgggtgcagagcagatgttaacttttttttgttttt 34224
Query: 1712 nnnnnnnnnnnagtggatgggcactggagcatctcggggtgagcactcatgttgctctgg 1771
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34223 tttttttttttagtggatgggcactggagcatctcggggtgagcactcatgttgctctgg 34164
Query: 1772 aagcctgctccccatggtcagggtactttttattcctcttccctccacctgtgtgaacac 1831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34163 aagcctgctccccatggtcagggtactttttattcctcttccctccacctgtgtgaacac 34104
Query: 1832 ccctatactaccacctcagtatagaccggaccttttggaagcctctctccccaaagccac 1891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34103 ccctatactaccacctcagtatagaccggaccttttggaagcctctctccccaaagccac 34044
Query: 1892 tcaggtagagcccagggagtgacaaagaatctggaagggaaaacaatgcagaaaagccct 1951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34043 tcaggtagagcccagggagtgacaaagaatctggaagggaaaacaatgcagaaaagccct 33984
Query: 1952 gtaaatgaactattgaagtatttggactttttctccagctgtaaagcatagtgtgtatat 2011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33983 gtaaatgaactattgaagtatttggactttttctccagctgtaaagcatagtgtgtatat 33924
Query: 2012 gtacaaatgtatattttttcatgcttttnnnnnnngaagttagctttgtgagaagatctt 2071
|||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 33923 gtacaaatgtatattttttcatgcttttaaaaaaagaagttagctttgtgagaagatctt 33864
Query: 2072 gtttggtaagtgactttactatgtaataggaccacactgtatcttgtcatccagtaacac 2131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33863 gtttggtaagtgactttactatgtaataggaccacactgtatcttgtcatccagtaacac 33804
Query: 2132 agtaaggcaggtcagcttttctttcctctttgaatctggctagttttggaggggcctggg 2191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33803 agtaaggcaggtcagcttttctttcctctttgaatctggctagttttggaggggcctggg 33744
Query: 2192 tttattgataggacgtagggtatcaatccttttacactgcttagagtctgcagtgtgggc 2251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33743 tttattgataggacgtagggtatcaatccttttacactgcttagagtctgcagtgtgggc 33684
Query: 2252 agtgcagtgttgaagtcagatgattttaggagtcaggaccaaactgccagtatactcctt 2311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33683 agtgcagtgttgaagtcagatgattttaggagtcaggaccaaactgccagtatactcctt 33624
Query: 2312 ggctct 2317
||||||
Sbjct: 33623 ggctct 33618
Score = 519 bits (262), Expect = e-144
Identities = 262/262 (100%)
Strand = Plus / Minus
Query: 2316 ctgaatagtcctccgtttctggtcgtttgatgtggctgctcaaggtttccccatcctcca 2375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32367 ctgaatagtcctccgtttctggtcgtttgatgtggctgctcaaggtttccccatcctcca 32308
Query: 2376 gacctctttacccctgcctggaaatcctcctcgggtttcttttcttctcgaacaagatgt 2435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32307 gacctctttacccctgcctggaaatcctcctcgggtttcttttcttctcgaacaagatgt 32248
Query: 2436 atcaactggagaagcactggcttccttgggccacagatcagggtcttcctgggttagaga 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32247 atcaactggagaagcactggcttccttgggccacagatcagggtcttcctgggttagaga 32188
Query: 2496 gaagggggaataaccattagagaaggtgaggcctgcttttgaggactgttcatagtagga 2555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32187 gaagggggaataaccattagagaaggtgaggcctgcttttgaggactgttcatagtagga 32128
Query: 2556 ataacgcatcttcctgaattct 2577
||||||||||||||||||||||
Sbjct: 32127 ataacgcatcttcctgaattct 32106
Score = 472 bits (238), Expect = e-130
Identities = 238/238 (100%)
Strand = Plus / Minus
Query: 380 gaaaaaggaagaaaaattggactggatgtaccagggccccggtgggatggtgaaccgtga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45272 gaaaaaggaagaaaaattggactggatgtaccagggccccggtgggatggtgaaccgtga 45213
Query: 440 tgaatacttactggggcgccccattgacaaatacgtttttgagaagatggaggagaagga 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45212 tgaatacttactggggcgccccattgacaaatacgtttttgagaagatggaggagaagga 45153
Query: 500 ggcaggctgttcctctgagacaggactcctcccaggctctatctttgccccatcgggtgc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45152 ggcaggctgttcctctgagacaggactcctcccaggctctatctttgccccatcgggtgc 45093
Query: 560 caattcccttcttgacatggccagcaaaatccgggaggacccactcttcatcatcagg 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45092 caattcccttcttgacatggccagcaaaatccgggaggacccactcttcatcatcagg 45035
Score = 408 bits (206), Expect = e-111
Identities = 206/206 (100%)
Strand = Plus / Minus
Query: 1 tgatcctgcgacgccgtcgccgcaatgggacgccctcccggaagtgggctctggatcggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49562 tgatcctgcgacgccgtcgccgcaatgggacgccctcccggaagtgggctctggatcggg 49503
Query: 61 cagtgaaagtggtgtccagttacccccgggaccagatctgggaagtcggagctgaactgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49502 cagtgaaagtggtgtccagttacccccgggaccagatctgggaagtcggagctgaactgt 49443
Query: 121 ttctttacctttctcccatcctttctgaatcttctaggtccgcctagtgaggaaacgtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49442 ttctttacctttctcccatcctttctgaatcttctaggtccgcctagtgaggaaacgtct 49383
Query: 181 ccgccgtcatggggggcggagacctg 206
||||||||||||||||||||||||||
Sbjct: 49382 ccgccgtcatggggggcggagacctg 49357
Score = 347 bits (175), Expect = 2e-92
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 206 gaatttgaagaagagctggcacccgcagactctccgcaatgtggagaaagtgtggaaggc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46766 gaatttgaagaagagctggcacccgcagactctccgcaatgtggagaaagtgtggaaggc 46707
Query: 266 tgagcagaagcatgaggccgagcggaagaagattgaggagcttcagcgggaactgcggga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46706 tgagcagaagcatgaggccgagcggaagaagattgaggagcttcagcgggaactgcggga 46647
Query: 326 ggagagggctcgggaggagatgcagcgctatgcggaggatgtcggggctgtcaag 380
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46646 ggagagggctcgggaggagatgcagcgctatgcggaggatgtcggggctgtcaag 46592
Score = 238 bits (120), Expect = 1e-59
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 1232 gatggagaacgccaagtggcgggaggcggagaggctcaacatcctcaagagacacgccaa 1291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35688 gatggagaacgccaagtggcgggaggcggagaggctcaacatcctcaagagacacgccaa 35629
Query: 1292 ggacgacgagcgcgagcagaggctgcagaagctggactctcgggatggcaagttcctcca 1351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35628 ggacgacgagcgcgagcagaggctgcagaagctggactctcgggatggcaagttcctcca 35569
Score = 196 bits (99), Expect = 4e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 1091 gcacaactctaaggtaagcaggagagacagaggccgaactaagagcccatcacctaaaaa 1150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38593 gcacaactctaaggtaagcaggagagacagaggccgaactaagagcccatcacctaaaaa 38534
Query: 1151 agaggtctaccaaaggcggcatgctccagggtacaccag 1189
|||||||||||||||||||||||||||||||||||||||
Sbjct: 38533 agaggtctaccaaaggcggcatgctccagggtacaccag 38495
Score = 172 bits (87), Expect = 6e-40
Identities = 90/91 (98%)
Strand = Plus / Minus
Query: 877 agctcaggaactccgaccggagccagggaccgcggggtcctccggcggctgagcagcggg 936
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 39651 agctcaggaactccgaccggagccagggaccgcggggtcctccggtggctgagcagcggg 39592
Query: 937 cagggcatgggttgaagaattactccaggtc 967
|||||||||||||||||||||||||||||||
Sbjct: 39591 cagggcatgggttgaagaattactccaggtc 39561
Score = 125 bits (63), Expect = 1e-25
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 752 acataagcacagaggctcaagtagcgatcgttgcagcagcgaggatgagcgcggccgggg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41027 acataagcacagaggctcaagtagcgatcgttgcagcagcgaggatgagcgcggccgggg 40968
Query: 812 gag 814
|||
Sbjct: 40967 gag 40965
Score = 105 bits (53), Expect = 1e-19
Identities = 53/53 (100%)
Strand = Plus / Minus
Query: 998 cgccagcaagaagagcaccagagaagcagggtcccgggacaggaggtcccggt 1050
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39460 cgccagcaagaagagcaccagagaagcagggtcccgggacaggaggtcccggt 39408
Score = 101 bits (51), Expect = 2e-18
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 615 aggaagaaagaggaggagnnnnnnngagaggtgttgaataatcctgtgaaaatgaagaaa 674
|||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 41949 aggaagaaagaggaggagaaaaaaagagaggtgttgaataatcctgtgaaaatgaagaaa 41890
Query: 675 attaaagaattg 686
||||||||||||
Sbjct: 41889 attaaagaattg 41878
Score = 99.6 bits (50), Expect = 7e-18
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 813 agatctcaaaagaagctggcgaattcttcccctgttttggccaaagtccc 862
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 40317 agatctcaaaagaagctggcgaattcttcccctgttttggccaaagtccc 40268
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 76,376,689
Number of extensions: 709
Number of successful extensions: 709
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 13
Length of query: 2577
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2555
Effective length of database: 2,808,408,574
Effective search space: 7175483906570
Effective search space used: 7175483906570
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)