Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029943.1| GTPase, IMAP family member 7 [Bos taurus]. 339 2e-93
Alignment gi|NP_001073726.1| GTPase, IMAP family member 7 [Bos taurus]. 338 5e-93
Alignment gi|NP_001039773.1| GTPase, IMAP family member 7 [Bos taurus]. 322 3e-88
Alignment gi|NP_001098504.1| GTPase, IMAP family member 7 [Bos taurus]. 314 7e-86
Alignment gi|NP_001039525.1| GTPase IMAP family member 4 [Bos taurus]. 208 7e-54
Alignment gi|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like... 186 3e-47
Alignment gi|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like... 186 3e-47
Alignment gi|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like is... 186 3e-47
Alignment gi|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like... 186 3e-47
Alignment gi|NP_001071589.1| GTPase IMAP family member 4-like [Bos taurus]. 182 3e-46
>ref|NP_001029943.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 294
Score = 339 bits (869), Expect = 2e-93
Identities = 166/285 (58%), Positives = 224/285 (78%), Gaps = 1/285 (0%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA + ++ LRIVLVGKTGSGKSATANTILG K+FESK++ +AVTKTCQ+ASR+WKGRELL
Sbjct: 1 MAATPNNALRIVLVGKTGSGKSATANTILGYKKFESKMAANAVTKTCQKASREWKGRELL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT++ L+TTCREISRC+ SCPGPHAIVLVL+L RHT EEQ+TV+L+K +FG
Sbjct: 61 VVDTPGLFDTKDSLNTTCREISRCVLASCPGPHAIVLVLRLGRHTQEEQQTVELVKNLFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
+ A+K+M++LFT K++LE+ SLS+F+ D++ NLQ +++ECG+R CAFSN T+QAEKEA
Sbjct: 121 KAAMKYMIILFTCKEELENQSLSNFLEDSNGNLQSLLQECGDRCCAFSNSKNTEQAEKEA 180
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETL-KILHEELQMECENIEKKYA 836
Q+QELVELI++MV++N GAY++D IY++ D+ L+ +E L K + + E +E +YA
Sbjct: 181 QVQELVELIDEMVQNNQGAYFSDPIYKETDQELKQQEEYLMKSYADTFNKQIEQVEVEYA 240
Query: 837 HXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
+ ++E + + EEAEK IL+AVF KIKN+L
Sbjct: 241 QNPSEEKMKKIKSITDEYNEQMMNVREEAEKRILQAVFDKIKNML 285
>ref|NP_001073726.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 293
Score = 338 bits (866), Expect = 5e-93
Identities = 166/285 (58%), Positives = 225/285 (78%), Gaps = 1/285 (0%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA +STLRIVLVGKTGSGKSATANTILGEK F+S+++ AVTKTCQ+A R+WKGRELL
Sbjct: 1 MAAIPNSTLRIVLVGKTGSGKSATANTILGEKVFKSRIAAEAVTKTCQKAVREWKGRELL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT+E L+TTCREIS+C+ SCPGPHAIVLVL+L R+T EEQ+TV L+K +FG
Sbjct: 61 VVDTPGLFDTKETLNTTCREISQCVLASCPGPHAIVLVLRLGRYTQEEQQTVALVKNLFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
+ A+K+M++LFTR+D+L D SLSDF+ AD NL+ +++ECG+R CA SN T+QAEKEA
Sbjct: 121 KAAMKYMIILFTRRDELGDQSLSDFLKYADVNLRSLLQECGDRCCAISNSMNTEQAEKEA 180
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILH-EELQMECENIEKKYA 836
Q+QELVELI++MV++N GAY++D IY+D+D++LR +E LK ++ +ELQ + + +EK+YA
Sbjct: 181 QVQELVELIDKMVQNNQGAYFSDPIYKDIDQKLRQQEEHLKKVYVDELQNKIKLVEKEYA 240
Query: 837 HXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
H + ++H E ++ + EAE +I + F+ I+N L
Sbjct: 241 HKQPAEKEKQIMLLMQKHEERMKNIRGEAEMNIFQVAFNMIRNTL 285
>ref|NP_001039773.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 297
Score = 322 bits (825), Expect = 3e-88
Identities = 164/276 (59%), Positives = 212/276 (76%), Gaps = 4/276 (1%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA + ++ LRIVLVGKTGSGKSATANTILG K FESK++ AVTKTCQ+ASR+WKGRELL
Sbjct: 1 MAATPNNALRIVLVGKTGSGKSATANTILGYKVFESKIAAEAVTKTCQKASREWKGRELL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT++ L+TTCREIS C+ SCPGPHAIVLVL+L+R+T EEQ+TV LIKA+FG
Sbjct: 61 VVDTPGLFDTKDSLNTTCREISLCVLASCPGPHAIVLVLRLDRYTQEEQQTVALIKALFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
E A+++M++LFTRKD+LED SLSDF+ +AD NL+ +++ECG R CA SN T+QAEKEA
Sbjct: 121 EAAMEYMIILFTRKDELEDQSLSDFLDNADVNLRSLLQECGERCCAISNSKNTNQAEKEA 180
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETL-KILHEELQMECENIEKKYA 836
Q+QELVELIE MV++N G Y+ D+IY++ ERLR +E L KI ++L+ + + +E KYA
Sbjct: 181 QIQELVELIENMVQNNQGTYFFDAIYKNTVERLRRREEVLKKIYDDQLKGDIQKVEVKYA 240
Query: 837 HXXXXXXXXXXXXV---ARRHSENVRTLTEEAEKSI 935
+ + E +R + EEA+ SI
Sbjct: 241 QAYKKRIQEKERKIKLLKMEYEEKLRCVREEAQNSI 276
>ref|NP_001098504.1| GTPase, IMAP family member 7 [Bos taurus].
Length = 297
Score = 314 bits (805), Expect = 7e-86
Identities = 159/288 (55%), Positives = 214/288 (74%), Gaps = 4/288 (1%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA ++D +LRI+LVGK G+GKSATANTILG K FESK++ AVTKTCQ+ASRKWKGRELL
Sbjct: 1 MAVTQDISLRILLVGKIGNGKSATANTILGGKVFESKIAAEAVTKTCQKASRKWKGRELL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT++ L+TTCREISRC+ S PGPHAI+LVL+L R+T EEQ+TV L+K +FG
Sbjct: 61 VVDTPGLFDTKDSLNTTCREISRCVLASSPGPHAIILVLRLRRYTQEEQQTVALVKNLFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
E A+K+M++LFT KD+LED SLSDF+ + D NL+ +++ECG R CA SN T+QAEKEA
Sbjct: 121 EAAMKYMIILFTHKDELEDQSLSDFLKNQDVNLRSLVKECGERCCAISNSGNTEQAEKEA 180
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETL-KILHEELQMECENIEKKYA 836
Q+QELVELI++MV++N G Y++D IY+D ERLR +E L K ++L+ME + +EK+ A
Sbjct: 181 QVQELVELIDKMVQNNQGTYFSDPIYKDTLERLRKLEEVLSKRYIDQLEMEIQKVEKECA 240
Query: 837 HXXXXXXXXXXXXV---ARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
+ + + +R + +EA+ ++ VF I +L
Sbjct: 241 QACEKIMQEKEGEIELLKMEYEKKLRNIRKEAQDNVFSHVFDDIMKVL 288
>ref|NP_001039525.1| GTPase IMAP family member 4 [Bos taurus].
Length = 319
Score = 208 bits (529), Expect = 7e-54
Identities = 111/280 (39%), Positives = 176/280 (62%), Gaps = 2/280 (0%)
Frame = +3
Query: 96 YLSPPERS--MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQA 269
YL P S +A+ +DS LR+VLVGKTG+GKSAT N+IL E+ F S S ++TK C++
Sbjct: 5 YLREPRTSHGLANPRDSQLRLVLVGKTGAGKSATGNSILREEVFPSSFSAVSITKHCEKG 64
Query: 270 SRKWKGRELLVVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQK 449
S WKGRE+++VDTPGLFDTE T +EI+RC+ + PGPHA++LV+ + R+T E+QK
Sbjct: 65 SSTWKGREVVIVDTPGLFDTEVPDSETLKEITRCMVLTSPGPHALLLVIPVGRYTLEDQK 124
Query: 450 TVKLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNC 629
+ I +FGE A +H++LLFT KDDL+ D++ A ++ +IRE +RYC F+N
Sbjct: 125 ATEKILTMFGERAREHIILLFTWKDDLKGMDFRDYLKHAPTAIRELIREFRDRYCVFNN- 183
Query: 630 SRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHEELQME 809
+ AE+E Q ++L+ L++ +V +G YYT+S+Y+ +E + ++ +++L E + E
Sbjct: 184 -KATGAEQENQREQLLALVQDVVDKCNGRYYTNSLYQKTEEEI---QKQIQVLQEYYRAE 239
Query: 810 CENIEKKYAHXXXXXXXXXXXXVARRHSENVRTLTEEAEK 929
E ++ + + + E +R L +E E+
Sbjct: 240 LERVKAQ---------------IKQELEEEIRKLKDELEQ 264
>ref|XP_002687089.1| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 186 bits (472), Expect = 3e-47
Identities = 92/211 (43%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+ S+LRI+LVGKTGSG+SAT N+IL + FESKL AVT+ CQ+A+ W GR ++VVDT
Sbjct: 38 ESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDT 97
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
P +F+ E + I C S PGPH ++LV QL R T+++ V +K VFG A
Sbjct: 98 PPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAE 157
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
++M++LFT K+DL GSL +++ + D L+R++RECG RYCAF+N + D E+ QL
Sbjct: 158 RYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGD--EQREQLA 215
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLR 761
+L+ +IE + +++ G + T+ ++ D L+
Sbjct: 216 QLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 246
>ref|XP_002687088.1| PREDICTED: GTPase, IMAP family member 1-like isoform 1 [Bos
taurus].
Length = 307
Score = 186 bits (472), Expect = 3e-47
Identities = 92/211 (43%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+ S+LRI+LVGKTGSG+SAT N+IL + FESKL AVT+ CQ+A+ W GR ++VVDT
Sbjct: 24 ESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDT 83
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
P +F+ E + I C S PGPH ++LV QL R T+++ V +K VFG A
Sbjct: 84 PPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAE 143
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
++M++LFT K+DL GSL +++ + D L+R++RECG RYCAF+N + D E+ QL
Sbjct: 144 RYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGD--EQREQLA 201
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLR 761
+L+ +IE + +++ G + T+ ++ D L+
Sbjct: 202 QLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 232
>ref|XP_869775.4| PREDICTED: GTPase, IMAP family member 1-like isoform 2 [Bos
taurus].
Length = 321
Score = 186 bits (472), Expect = 3e-47
Identities = 92/211 (43%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+ S+LRI+LVGKTGSG+SAT N+IL + FESKL AVT+ CQ+A+ W GR ++VVDT
Sbjct: 38 ESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDT 97
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
P +F+ E + I C S PGPH ++LV QL R T+++ V +K VFG A
Sbjct: 98 PPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAE 157
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
++M++LFT K+DL GSL +++ + D L+R++RECG RYCAF+N + D E+ QL
Sbjct: 158 RYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGD--EQREQLA 215
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLR 761
+L+ +IE + +++ G + T+ ++ D L+
Sbjct: 216 QLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 246
>ref|XP_002704228.1| PREDICTED: GTPase, IMAP family member 1-like [Bos taurus].
Length = 307
Score = 186 bits (472), Expect = 3e-47
Identities = 92/211 (43%), Positives = 139/211 (65%), Gaps = 1/211 (0%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+ S+LRI+LVGKTGSG+SAT N+IL + FESKL AVT+ CQ+A+ W GR ++VVDT
Sbjct: 24 ESSSLRIILVGKTGSGRSATGNSILCQPMFESKLGAQAVTRKCQRATGMWNGRSIVVVDT 83
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
P +F+ E + I C S PGPH ++LV QL R T+++ V +K VFG A
Sbjct: 84 PPIFEAEAQDQEVYENIGACYLLSVPGPHVLLLVTQLGRFTEQDVVAVTRVKEVFGAGAE 143
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
++M++LFT K+DL GSL +++ + D L+R++RECG RYCAF+N + D E+ QL
Sbjct: 144 RYMVILFTHKEDLGGGSLDEYVANTDNLRLRRLVRECGRRYCAFNNRALGD--EQREQLA 201
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLR 761
+L+ +IE + +++ G + T+ ++ D L+
Sbjct: 202 QLMAVIEGLEQEHQGVFLTNELFSDAQMLLQ 232
>ref|NP_001071589.1| GTPase IMAP family member 4-like [Bos taurus].
Length = 246
Score = 182 bits (463), Expect = 3e-46
Identities = 95/200 (47%), Positives = 135/200 (67%), Gaps = 2/200 (1%)
Frame = +3
Query: 96 YLSPPERS--MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQA 269
YLS P S + + DS LR+VLVGKTG+GKSAT N+IL E+ F S S ++TK C++
Sbjct: 5 YLSEPRASHGLTNPGDSQLRLVLVGKTGAGKSATGNSILREEVFLSSFSAVSITKHCKKG 64
Query: 270 SRKWKGRELLVVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQK 449
S WKGRE++VVDTPGLFDTE T +EI+RC+ + PGPH ++LV+ L R+T E Q+
Sbjct: 65 SSTWKGREVVVVDTPGLFDTEAPDADTVKEITRCMVLTSPGPHTLLLVIPLGRYTPEGQQ 124
Query: 450 TVKLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNC 629
+ I +FGE A +HM+LLFTRKDDLE +++ A +Q +I + +RYC F+N
Sbjct: 125 ATEKILTMFGERAREHMILLFTRKDDLEGMDFCEYLKQAPTAIQELIHKFRDRYCVFNN- 183
Query: 630 SRTDQAEKEAQLQELVELIE 689
+ AE+E Q ++L+ L++
Sbjct: 184 -KATGAEQENQREQLLVLVQ 202
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 31,147,376
Number of extensions: 748430
Number of successful extensions: 3264
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 3220
Number of HSP's successfully gapped: 26
Length of query: 324
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 222
Effective length of database: 14,306,398
Effective search space: 3176020356
Effective search space used: 3176020356
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853560.1| PREDICTED: similar to GTPase, IMAP family membe... 350 2e-96
Alignment gi|XP_532756.2| PREDICTED: similar to GTPase, IMAP family membe... 218 9e-57
Alignment gi|XP_539913.2| PREDICTED: similar to GTPase, IMAP family membe... 184 1e-46
Alignment gi|XP_539911.2| PREDICTED: similar to GTPase, IMAP family membe... 162 6e-40
Alignment gi|XP_853549.1| PREDICTED: similar to GTPase, IMAP family membe... 147 1e-35
Alignment gi|XP_539912.2| PREDICTED: similar to GTPase, IMAP family membe... 142 6e-34
Alignment gi|XP_853579.1| PREDICTED: similar to GTPase, IMAP family membe... 107 2e-23
>ref|XP_853560.1| PREDICTED: similar to GTPase, IMAP family member 7 [Canis
familiaris].
Length = 291
Score = 350 bits (897), Expect = 2e-96
Identities = 177/285 (62%), Positives = 222/285 (77%), Gaps = 1/285 (0%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MAD +D+TLRIVLVGKTGSGKSATANTILG + F+S+++ HA+TK CQ+ASR+W+GR+LL
Sbjct: 1 MADPQDNTLRIVLVGKTGSGKSATANTILGRQVFDSRIAAHAITKECQKASREWEGRKLL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT+E LDTTC+EISRC+ SCPGPHAI+LVLQL R+T+EEQKTV LIKAVFG
Sbjct: 61 VVDTPGLFDTKETLDTTCKEISRCVISSCPGPHAILLVLQLGRYTEEEQKTVALIKAVFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
+ ALKHM++LFTRKD+LED SLSDFI AD L+ I +ECG+RYCAF+N R +AEKEA
Sbjct: 121 KPALKHMIMLFTRKDNLEDQSLSDFIESADVKLKNITKECGDRYCAFNN--RAKEAEKEA 178
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETL-KILHEELQMECENIEKKYA 836
Q+QELVELIEQMV+ N GAY++D IY+D +ERL+ E L KI ++L E + IEK+YA
Sbjct: 179 QVQELVELIEQMVQSNGGAYFSDDIYKDTEERLKRKAEILKKIYTDQLNKEIKLIEKEYA 238
Query: 837 HXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
H + ++ E ++ L EEAEK I V + I +L
Sbjct: 239 HLSQKEREEKIKVLRMKYEEQIKNLREEAEKGIFGDVLNSIMRVL 283
>ref|XP_532756.2| PREDICTED: similar to GTPase, IMAP family member 4
(Immunity-associated protein 4) (Immunity-associated
nucleotide 1 protein) (hIAN1) [Canis familiaris].
Length = 330
Score = 218 bits (554), Expect = 9e-57
Identities = 106/237 (44%), Positives = 164/237 (69%), Gaps = 1/237 (0%)
Frame = +3
Query: 126 DSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVV 305
D +DS LR+VLVGKTG+GKSAT N+ILGEK F S ++ +VTK C++ S +W GREL+VV
Sbjct: 26 DCRDSQLRLVLVGKTGAGKSATGNSILGEKVFHSSIAAKSVTKVCKKGSSRWHGRELIVV 85
Query: 306 DTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGET 485
DTPG+FDTE + TCREI+ CI + PGPHA++LV+ L R+T EE+K ++ I +FG
Sbjct: 86 DTPGIFDTEVQDADTCREIAHCILLTSPGPHALLLVVPLGRYTQEERKAMEKILQMFGPR 145
Query: 486 ALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQL 665
A ++M+LLFTRKDDL+ D++ DA ++Q ++ +RYC F+N R E+EAQ
Sbjct: 146 ARRYMILLFTRKDDLDGMHFQDYLKDASEDIQELVDMFRDRYCVFNN--RATGTEQEAQR 203
Query: 666 QELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHE-ELQMECENIEKKY 833
+L+ L++++V +N+G YT+ +++ +E ++ E L+ + EL+ + I +++
Sbjct: 204 MQLLTLVQRVVMENEGGCYTNKMFQKAEEEIQKKIEVLQEFYRAELERQRVQIREEF 260
>ref|XP_539913.2| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 581
Score = 184 bits (466), Expect = 1e-46
Identities = 87/209 (41%), Positives = 140/209 (66%), Gaps = 1/209 (0%)
Frame = +3
Query: 129 SKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVD 308
+++S LRI+LVGKTG+GKSAT N+IL ++ FES+L+ TKTC ++ W RE++++D
Sbjct: 18 ARESKLRIILVGKTGTGKSATGNSILRKQAFESRLAAQPFTKTCSESQGSWGEREMVIID 77
Query: 309 TPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETA 488
TP +F + D+ +E+ RC S PGPH ++LV QL R T ++Q+ V+ +K +FGE
Sbjct: 78 TPDMFSERDHSDSLYKEVERCYLLSAPGPHVLLLVTQLGRFTTQDQQVVQRMKEIFGEDV 137
Query: 489 LKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQL 665
++H ++LFT K+DL+ SL+D+I D D L +++ CG R CAF N ++++ Q+
Sbjct: 138 MRHTIVLFTHKEDLKGESLTDYILDIDNKALCKLVAACGGRVCAFDN--HATGSDRDDQV 195
Query: 666 QELVELIEQMVRDNDGAYYTDSIYEDVDE 752
+EL+ L+E +V + G +YT+ +Y V E
Sbjct: 196 KELMALMEDLVLERRGEHYTNGLYGLVTE 224
Score = 182 bits (461), Expect = 5e-46
Identities = 92/216 (42%), Positives = 137/216 (63%), Gaps = 9/216 (4%)
Frame = +3
Query: 117 SMADSKDS--------TLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQAS 272
+MA+ +D +LRI+LVGKTGSG+SAT N+IL + FES+L VTKTCQ +
Sbjct: 283 TMAEGRDEDNWFATPPSLRIILVGKTGSGRSATGNSILCQPVFESRLGNQPVTKTCQGET 342
Query: 273 RKWKGRELLVVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKT 452
W GR +LVVDTP LF+ E + + I C S PGPH ++LV L R T ++
Sbjct: 343 GTWNGRSILVVDTPSLFEAEAQTQELYKAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVA 402
Query: 453 VKLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNC 629
V+ +K VFG A++H ++LFT K+DL SL D++ D D +L+ +++ECG RYCAF+N
Sbjct: 403 VRRVKEVFGAGAMRHAVVLFTHKEDLAGESLDDYLADTDNHSLRSLVQECGRRYCAFNN- 461
Query: 630 SRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIY 737
R E+ QL L+ ++E++ R+ GA+Y++ ++
Sbjct: 462 -RATGEEQREQLARLMAVVERLERETGGAFYSNDLF 496
>ref|XP_539911.2| PREDICTED: similar to GTPase, IMAP family member 1 [Canis
familiaris].
Length = 373
Score = 162 bits (409), Expect = 6e-40
Identities = 83/200 (41%), Positives = 125/200 (62%), Gaps = 2/200 (1%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
L ++LVG+TG+GKSAT N+ILG + F S+L+ VT+TC SR+W G + V DTP LF
Sbjct: 90 LGLILVGRTGAGKSATGNSILGHRSFPSRLAAAPVTRTCALGSRRWAGWRVEVTDTPDLF 149
Query: 324 DTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHM 500
E + D C E RC S PGPHA++LV QL R T ++++ V+ ++ +FG L
Sbjct: 150 SAEGRRADRGCAERGRCYLLSAPGPHALLLVTQLGRFTAQDEQAVRGVRELFGPGVLARA 209
Query: 501 MLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
+++FTR++DL S D++ D L+ ++ ECG R CA N R + AE+EAQ EL+
Sbjct: 210 VVVFTRREDLAGASPHDYVRATDNRALRALVAECGGRVCALDN--RAEGAEREAQAGELL 267
Query: 678 ELIEQMVRDNDGAYYTDSIY 737
L ++ R++ A +T+ +Y
Sbjct: 268 ALAARLAREHADAPFTNDVY 287
>ref|XP_853549.1| PREDICTED: similar to GTPase, IMAP family member 8 [Canis
familiaris].
Length = 723
Score = 147 bits (372), Expect = 1e-35
Identities = 76/192 (39%), Positives = 121/192 (63%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LR++L+G++G GKSAT NTILG F SK S VTK CQ+ SR L+V+DTP LF
Sbjct: 72 LRLLLLGRSGVGKSATGNTILGRSMFVSKFSNQMVTKVCQRESRATGEGTLVVIDTPYLF 131
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+ + R I RC+ P H ++LV+ + + E+++ V ++ VFG A ++M+
Sbjct: 132 SSMSPAEDKQRNIERCLELCAPSLHVLLLVIAIGCYELEDKEVVCGVQEVFGAEARRYMI 191
Query: 504 LLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVEL 683
++FTRKDDLE S+ D+I D +L+ ++ CG RYCA +N + + E+ Q++EL+ +
Sbjct: 192 VVFTRKDDLEGDSVQDYIEGLD-SLRELVENCGGRYCALNN--KGSEEERVGQVRELLGM 248
Query: 684 IEQMVRDNDGAY 719
++++V +N G Y
Sbjct: 249 VQRLVGENGGPY 260
Score = 141 bits (355), Expect = 1e-33
Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 4/231 (1%)
Frame = +3
Query: 111 ERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGR 290
+R + L +VLVGK+G GKSAT NTILG F S+ VT+TCQ + R W +
Sbjct: 488 DRPCTFREQEPLSLVLVGKSGPGKSATGNTILGRPDFLSQFRAQPVTRTCQSSRRLWGQQ 547
Query: 291 ELLVVDTPGL---FDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKL 461
E++VVD P L E E+ RC + C G +VLV QL T E+++ VK
Sbjct: 548 EVVVVDMPSLCLMASAEGGPSQLEEEVRRC-WSCCKGNKILVLVFQLGWFTQEDKRAVKE 606
Query: 462 IKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRT 638
++ +FGE LK+ ++LFTRK+DLE ++D+I +A+ LQ II+ CG R CAF+N T
Sbjct: 607 LETIFGEEVLKYTIVLFTRKEDLE-VDIADYIKNAENRTLQNIIKRCGGRICAFNN-KET 664
Query: 639 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILH 791
QA +E Q L+ + Q++ + G Y +E++ + ++N ++ K H
Sbjct: 665 GQA-REDQAAVLLTMANQLIESHGGHGYPQK-WENISKSIKNGQDKHKPKH 713
Score = 122 bits (305), Expect = 7e-28
Identities = 63/188 (33%), Positives = 117/188 (62%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
L+++LVGK G+GKSA N++LG++ FE+K S +VT+ SR W+ R ++++DTP +
Sbjct: 308 LKVLLVGKRGAGKSAAGNSLLGKRVFETKFSEESVTRRFVLESRIWRERRVVIIDTPDIS 367
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+++ E+ R +F GPHA +LV L + +++ + ++A FG+ +++++
Sbjct: 368 SSKD----IKAELRRHVF---GGPHAFLLVTPLGSFSKKDEVVLDTLQASFGDKFVEYLI 420
Query: 504 LLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVEL 683
+LFTRK+DL D L F+ L ++I++C +RYC FS R + E++ Q +EL++
Sbjct: 421 ILFTRKEDLGDQDLEMFLKSRSTALCKLIKKCKDRYCVFS--YRVTREEEQHQAEELLQT 478
Query: 684 IEQMVRDN 707
+ +V+ +
Sbjct: 479 VVSLVQQH 486
>ref|XP_539912.2| PREDICTED: similar to GTPase, IMAP family member 6 isoform 1 [Canis
familiaris].
Length = 314
Score = 142 bits (357), Expect = 6e-34
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LR++LVGK+GSGKSAT N+ILG + F S+LSP VT+ Q+ S W GREL V+DTP L
Sbjct: 98 LRLLLVGKSGSGKSATGNSILGRREFPSRLSPQPVTRDLQRGSGAWAGRELEVIDTPDLL 157
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+ + R I + +S PGPHA++LV QL R T+E+++ V+ ++ FG L H +
Sbjct: 158 SPQAGPEAAARAICEAVAFSAPGPHAVLLVTQLGRFTEEDRQAVRGLQEAFGVGVLAHTV 217
Query: 504 LLFTRKDDLEDGSLSDFIGDADANLQRIIRE--CGNRYC 614
L+FTR++DL GSL +++ D NL + + C R+C
Sbjct: 218 LVFTRREDLGGGSLEEYVRRTD-NLHPALLDAVCARRHC 255
>ref|XP_853579.1| PREDICTED: similar to GTPase, IMAP family member 5 [Canis
familiaris].
Length = 298
Score = 107 bits (266), Expect = 2e-23
Identities = 50/129 (38%), Positives = 82/129 (63%), Gaps = 1/129 (0%)
Frame = +3
Query: 354 REISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMMLLFTRKDDLE 533
+ I C S PGPH ++LV L R T ++ V+ +K VFG A++H ++LFT K+DL
Sbjct: 114 KAIGDCYLLSAPGPHVLLLVTPLGRFTAQDAVAVRRVKEVFGAGAMRHAVVLFTHKEDLA 173
Query: 534 DGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVELIEQMVRDND 710
SL D++ D D +L+ +++ECG RYCAF+N R E+ QL L+ ++E++ R+
Sbjct: 174 GESLDDYLADTDNHSLRSLVQECGRRYCAFNN--RATGEEQREQLARLMAVVERLERETG 231
Query: 711 GAYYTDSIY 737
GA+Y++ ++
Sbjct: 232 GAFYSNDLF 240
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 32,575,914
Number of extensions: 770861
Number of successful extensions: 3364
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3351
Number of HSP's successfully gapped: 10
Length of query: 324
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 221
Effective length of database: 15,440,896
Effective search space: 3412438016
Effective search space used: 3412438016
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like ... 314 5e-86
Alignment gi|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelia... 307 5e-84
Alignment gi|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like ... 201 7e-52
Alignment gi|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like ... 186 2e-47
Alignment gi|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like ... 186 2e-47
Alignment gi|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like ... 172 3e-43
Alignment gi|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP ... 169 2e-42
Alignment gi|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2... 64 1e-10
>ref|XP_003134606.2| PREDICTED: GTPase IMAP family member 7-like [Sus scrofa].
Length = 208
Score = 314 bits (804), Expect = 5e-86
Identities = 162/187 (86%), Positives = 167/187 (89%)
Frame = +3
Query: 411 VLQLNRHTDEEQKTVKLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRII 590
VL + +++KTV LIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRII
Sbjct: 6 VLSVAIKRTKKKKTVMLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRII 65
Query: 591 RECGNRYCAFSNCSRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHK 770
RECGNRYCAFSNCSRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHK
Sbjct: 66 RECGNRYCAFSNCSRTDQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHK 125
Query: 771 ETLKILHEELQMECENIEKKYAHXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVF 950
ETLKIL+EELQMECENIEKKYAH V RRHSENVRTLTEEAEKSILEAVF
Sbjct: 126 ETLKILNEELQMECENIEKKYAHKPLPEKEKEKELVRRRHSENVRTLTEEAEKSILEAVF 185
Query: 951 SKIKNLL 971
SKIKNLL
Sbjct: 186 SKIKNLL 192
>ref|XP_003360131.1| PREDICTED: nitric oxide synthase, endothelial-like [Sus scrofa].
Length = 767
Score = 307 bits (787), Expect = 5e-84
Identities = 157/171 (91%), Positives = 158/171 (92%)
Frame = +3
Query: 459 LIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRT 638
LIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRT
Sbjct: 581 LIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRT 640
Query: 639 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHEELQMECEN 818
DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKIL+EELQMECEN
Sbjct: 641 DQAEKEAQLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILNEELQMECEN 700
Query: 819 IEKKYAHXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
IEKKYAH V RRHSENVRTLTEEAEKSILEAVFSKIKNLL
Sbjct: 701 IEKKYAHKPLPEKEKEKELVRRRHSENVRTLTEEAEKSILEAVFSKIKNLL 751
>ref|XP_003134633.2| PREDICTED: GTPase IMAP family member 2-like [Sus scrofa].
Length = 280
Score = 201 bits (510), Expect = 7e-52
Identities = 96/215 (44%), Positives = 148/215 (68%), Gaps = 1/215 (0%)
Frame = +3
Query: 129 SKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVD 308
++ S LRI+LVGKTG+GKSAT N+ILG++ FES+LS ++TKTC + W+GRE++V+D
Sbjct: 63 ARGSELRIILVGKTGTGKSATGNSILGKQVFESRLSAQSLTKTCSVSRGSWRGREMVVID 122
Query: 309 TPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETA 488
TP +F + ++ E+ RC S PGPH ++LV QL R T ++++ V+ +K +FG
Sbjct: 123 TPDMFSGRDPSESLYEEVQRCFLLSAPGPHVLLLVTQLGRFTTKDEQVVRRVKELFGADV 182
Query: 489 LKHMMLLFTRKDDLEDGSLSDFI-GDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQL 665
L+H ++LFTRK+DLE GSL +I G + L +++ CG R CAF+N R + ++AQ+
Sbjct: 183 LRHTIVLFTRKEDLEGGSLMHYIHGSDNKALSKLVAACGGRVCAFNN--RARGSNRDAQV 240
Query: 666 QELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHK 770
+EL++LIE +VR G YT+ +Y +ERL++ K
Sbjct: 241 KELMDLIESLVRAKKGDCYTNQLYRQSEERLKDLK 275
>ref|XP_003134611.1| PREDICTED: GTPase IMAP family member 1-like isoform 2 [Sus scrofa].
Length = 299
Score = 186 bits (471), Expect = 2e-47
Identities = 97/231 (41%), Positives = 149/231 (64%), Gaps = 10/231 (4%)
Frame = +3
Query: 111 ERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGR 290
E A ++ LR++L G+TG+GKS+T N+ILG K F+S+L +VT++C AS +W
Sbjct: 17 EDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEW 76
Query: 291 ELLVVDTPGLFDTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIK 467
++ V+DTP LF +E + D C+E RC + PGPHA++LV QL R T ++Q+ + +K
Sbjct: 77 DVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVK 136
Query: 468 AVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQ 644
A+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 137 ALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RATG 194
Query: 645 AEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 773
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 195 PEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 245
>ref|XP_003134609.1| PREDICTED: GTPase IMAP family member 1-like [Sus scrofa].
Length = 296
Score = 186 bits (471), Expect = 2e-47
Identities = 97/231 (41%), Positives = 149/231 (64%), Gaps = 10/231 (4%)
Frame = +3
Query: 111 ERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGR 290
E A ++ LR++L G+TG+GKS+T N+ILG K F+S+L +VT++C AS +W
Sbjct: 21 EDLQAALQEPRLRLLLAGRTGAGKSSTGNSILGRKHFDSRLRATSVTRSCAVASGRWAEW 80
Query: 291 ELLVVDTPGLFDTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIK 467
++ V+DTP LF +E + D C+E RC + PGPHA++LV QL R T ++Q+ + +K
Sbjct: 81 DVDVLDTPDLFSSEVARTDPDCKERGRCYLLAAPGPHALLLVTQLGRFTAQDQQAWRGVK 140
Query: 468 AVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQ 644
A+FG+ H +++FTRK+DL +GSL D++ D++ L++++ ECG R CAF+N R
Sbjct: 141 ALFGDGVSAHTIVVFTRKEDLAEGSLQDYVRDSENQALRQLVAECGGRVCAFNN--RATG 198
Query: 645 AEKEAQLQELVELIEQMVRDNDGAYYTDSIYE--------DVDERLRNHKE 773
E+EAQ+ EL+ L+E +VRD GA YT+ +Y +ERLR E
Sbjct: 199 PEQEAQVTELLRLVEDLVRDRGGAPYTNDVYHLAQALGGVSPEERLRKVAE 249
>ref|XP_003360132.1| PREDICTED: GTPase IMAP family member 6-like [Sus scrofa].
Length = 270
Score = 172 bits (436), Expect = 3e-43
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 1/221 (0%)
Frame = +3
Query: 69 TSFKIRFCGYLSPPERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAV 248
TS+ G L P + LR++LVGK GSGKSAT N+ILG K F+ KLS V
Sbjct: 52 TSYGQLTLGLLMLPGLRADERTPRKLRLLLVGKPGSGKSATGNSILGRKLFKCKLSSRPV 111
Query: 249 TKTCQQASRKWKGRELLVVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNR 428
T+ Q+ R W GREL V+DTP + + SR I +S PGPHA++LV QL R
Sbjct: 112 TQDFQRGCRVWAGRELEVIDTPDILSPRAAPGVAAQGFSRAIAFSFPGPHAVLLVTQLGR 171
Query: 429 HTDEEQKTVKLIKAVFGETALKHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGN 605
T E+Q+ V+ ++ VFG L H +L+FTRK+DL GSL +++ + D L ++ C
Sbjct: 172 FTQEDQEVVRRLQEVFGVGVLAHTILVFTRKEDLGGGSLEEYLRETDNRELAQLDVICER 231
Query: 606 RYCAFSNCSRTDQAEKEAQLQELVELIEQMVRDNDGAYYTD 728
R+C F+N + + AE+EAQL+EL++ IE ++ +N+G YY++
Sbjct: 232 RHCGFNN--KVEGAEQEAQLEELMQQIESILWENEGHYYSN 270
>ref|XP_003134607.1| PREDICTED: LOW QUALITY PROTEIN: GTPase IMAP family member 4-like
[Sus scrofa].
Length = 315
Score = 169 bits (429), Expect = 2e-42
Identities = 90/233 (38%), Positives = 144/233 (61%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+DS LR+VLVGKTG+GKSAT N+ILG+K F S +S ++TK C++ WK RE++VVDT
Sbjct: 21 RDSQLRLVLVGKTGAGKSATGNSILGKKVFPSGISAKSITKHCEKGKSTWKEREVVVVDT 80
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
PG+FD E + + T +EI RC+ + PG HA++LV+ L R Q + K+ GE A+
Sbjct: 81 PGIFDPEVQEEDTVKEICRCMILTSPGXHALLLVIPLGRTRQRAQASSKIXPV--GERAM 138
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQE 671
+ M+ L TRKDDLE ++ +A +++ ++ + NRYC +N R E++ Q +
Sbjct: 139 QRMIXLVTRKDDLEGTDFHEYXREASESVRELMGKFRNRYCVVNN--RATGEERKRQRDQ 196
Query: 672 LVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHEELQMECENIEKK 830
L+ L+ ++V++ YYT+ +YE +E ++ K++ E + E E + K
Sbjct: 197 LLSLVVRVVKECGERYYTNYLYEKSEEVIQ------KVIEENRRAELEREKAK 243
>ref|XP_003357100.1| PREDICTED: putative protein PHLOEM PROTEIN 2-LIKE A3-like [Sus
scrofa].
Length = 216
Score = 63.9 bits (154), Expect = 1e-10
Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 17/206 (8%)
Frame = +3
Query: 126 DSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQ-------QASRKWK 284
DS T+ + L G T SGKS+ N +LG F S SP +VTK C A +
Sbjct: 2 DSNKLTINLALFGMTQSGKSSAGNILLGSTDFHSSFSPSSVTKDCTLGRSCHLHAFMRRG 61
Query: 285 GRELL----VVDTPGLFDTEEKLDTTCREISRCI--FYSCPGPHAIVLVLQLNRHT--DE 440
G+E+ V+DTPG + +E+ + + G H +LV + + E
Sbjct: 62 GQEITLQVQVLDTPGYPHSMLSKKHVKQEVREALARHFGQEGLHLALLVQRADVPLCGQE 121
Query: 441 EQKTVKLIKAVFGETALKHMMLLFTRKDDLEDGSLS--DFIGDADANLQRIIRECGNRYC 614
E V+LI+ + G+ + +LFT + +E+ + +++ +A L ++ ++Y
Sbjct: 122 ESSPVQLIQELLGQAWKNYTAILFTHAEKIEEAGFNEEEYLREASDTLLTLLNSIQHKYI 181
Query: 615 AFSNCSRTDQAEKEAQLQELVELIEQ 692
+ ++ L+ ++E I++
Sbjct: 182 FQYKKGNSPNEQRLKILERIIEFIKE 207
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 20,020,302
Number of extensions: 476693
Number of successful extensions: 2078
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2066
Number of HSP's successfully gapped: 8
Length of query: 324
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 225
Effective length of database: 8,879,129
Effective search space: 1997804025
Effective search space used: 1997804025
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus]. 314 7e-86
Alignment gi|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus]. 311 5e-85
Alignment gi|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musc... 199 3e-51
Alignment gi|NP_778200.1| GTPase IMAP family member 5 [Mus musculus]. 179 4e-45
Alignment gi|NP_112537.2| GTPase IMAP family member 3 [Mus musculus]. 176 2e-44
Alignment gi|NP_001230128.1| GTPase IMAP family member 4 isoform c [Mus m... 174 1e-43
Alignment gi|NP_787056.1| GTPase IMAP family member 1 [Mus musculus]. 172 4e-43
Alignment gi|NP_032402.2| GTPase IMAP family member 1 [Mus musculus]. 172 4e-43
Alignment gi|NP_694815.1| GTPase IMAP family member 6 [Mus musculus]. 166 2e-41
Alignment gi|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus]. 134 8e-32
>ref|NP_777620.1| GTPase, IMAP family member 9 [Mus musculus].
Length = 291
Score = 314 bits (804), Expect = 7e-86
Identities = 156/285 (54%), Positives = 209/285 (73%), Gaps = 1/285 (0%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA D+ +RI+LVGKTG+GKSATANTILG ++F+SK+ +AVTKTCQ+A R+WKG+ L+
Sbjct: 1 MAGQGDTEVRIILVGKTGNGKSATANTILGRRQFDSKICANAVTKTCQRAYREWKGKNLV 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT+E + TTC EISRC+ YSCPGPHAI+LVL+L+R+T+EEQKTV LIK +FG
Sbjct: 61 VVDTPGLFDTKETMKTTCFEISRCVLYSCPGPHAIILVLRLDRYTEEEQKTVALIKGLFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
E ALK+M++LFT K+DLED SL +F+ DA L II +CG RY AF+N + D E+E
Sbjct: 121 EAALKYMIILFTHKEDLEDQSLDNFVSDAGEKLNNIISQCGKRYLAFNNKAALD--EQEN 178
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILH-EELQMECENIEKKYA 836
Q+Q+L+EL E+MV N G+Y++D IY+D+D RL + E LK + ++L E E IEK+YA
Sbjct: 179 QVQQLIELTEKMVAQNGGSYFSDKIYKDIDSRLNHCLEELKETYAQQLTSEIERIEKEYA 238
Query: 837 HXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
R H E +R L E+AE+++ +F KIK +L
Sbjct: 239 AKLEKGKAAQIVFAQRNHDEKLRNLKEKAEETVFMYIFQKIKEIL 283
>ref|NP_666279.1| GTPase, IMAP family member 7 [Mus musculus].
Length = 293
Score = 311 bits (797), Expect = 5e-85
Identities = 158/287 (55%), Positives = 213/287 (74%), Gaps = 3/287 (1%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA+ D++LRIVLVGKTGSGKSATANTILG+KRF S+++PHAVT+ CQ SR+WK R+LL
Sbjct: 1 MAEPSDNSLRIVLVGKTGSGKSATANTILGQKRFVSRIAPHAVTQNCQSDSRRWKERDLL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT+ KL+TTC EISRC+ SCPGPHAI+LVLQLNR T EEQ+TV IKA+FG
Sbjct: 61 VVDTPGLFDTKVKLETTCLEISRCVLQSCPGPHAIILVLQLNRFTVEEQETVIRIKAIFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
E +K+M++LFTRKDDLED SLSDFI D+D NL+ II+ECGNR A +N + ++AE+E
Sbjct: 121 EEVMKYMIVLFTRKDDLEDQSLSDFIADSDTNLKSIIKECGNRCLAINN--KAERAERET 178
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHEEL-QMECENIEKKYA 836
Q+QEL+ L+E +V++N G Y++ +Y+D + RL+ E L+ ++ +L + E +E++YA
Sbjct: 179 QVQELMGLVETLVQNNGGLYFSHPVYKDAERRLKKQVEILRKIYTDLPEKEIRIVEEEYA 238
Query: 837 HXXXXXXXXXXXXVARRHSEN--VRTLTEEAEKSILEAVFSKIKNLL 971
A R + N +R L EEAEK+I + ++K +L
Sbjct: 239 LRKFSAQEREKKIQAIRENYNLKIRNLREEAEKNIFNQIIEEVKKVL 285
>ref|NP_778155.2| GTPase IMAP family member 4 isoform a [Mus musculus].
Length = 328
Score = 199 bits (505), Expect = 3e-51
Identities = 112/267 (41%), Positives = 166/267 (62%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LRIVL+GKTG+GKS+T N+ILGEK F S + ++TK C++ W G+EL+VVDTPG+F
Sbjct: 31 LRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGIF 90
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
DTE T REI+R + + PGPHA++LV+ L R+T EE K + I +FG+ A + M+
Sbjct: 91 DTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 504 LLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVEL 683
LL TRKDDLED + +++ A Q ++ E NRYC F+N R AEKE Q +L+ L
Sbjct: 151 LLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEFQNRYCLFNN--RASGAEKEEQKMQLLTL 208
Query: 684 IEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHEELQMECENIEKKYAHXXXXXXXX 863
++ MVR+N G +T+ +YE + ++ KETL++ +EL E +E++ A
Sbjct: 209 VQSMVRENGGRCFTNKMYESAECVIQ--KETLRM--QELYR--EELEREKAR-------- 254
Query: 864 XXXXVARRHSENVRTLTEEAEKSILEA 944
+ R + E ++ L +E E+ I A
Sbjct: 255 ----IRREYEEQIKDLRDELEREIRRA 277
>ref|NP_778200.1| GTPase IMAP family member 5 [Mus musculus].
Length = 308
Score = 179 bits (453), Expect = 4e-45
Identities = 90/233 (38%), Positives = 149/233 (63%), Gaps = 5/233 (2%)
Frame = +3
Query: 132 KDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDT 311
+ S LRI+LVGK+G GKSAT N+IL F+S+L +VT+T Q + W+GR +LVVDT
Sbjct: 23 ESSCLRILLVGKSGCGKSATGNSILRRPAFQSRLRGQSVTRTSQAETGTWEGRSILVVDT 82
Query: 312 PGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
P +F+++ + ++I C PGPH ++LV QL R T E+ V+++K VFG +
Sbjct: 83 PPIFESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDAMAVRMVKEVFGVGVM 142
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
+HM++LFTRK+DLE+ SL +F+ D +L+ + +ECG RYCAF+N R E++ QL
Sbjct: 143 RHMIVLFTRKEDLEEKSLEEFVTHTDNRSLRSLTQECGRRYCAFNN--RASGEEQQGQLA 200
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLRN----HKETLKILHEELQMECE 815
EL+ L+ ++ ++ +G+++++ ++ + LR H+E + +++ E E
Sbjct: 201 ELMALVRRLEQECEGSFHSNDLFLHAEALLREGYSVHQEAYRCYLAKVRQEVE 253
>ref|NP_112537.2| GTPase IMAP family member 3 [Mus musculus].
Length = 301
Score = 176 bits (447), Expect = 2e-44
Identities = 88/229 (38%), Positives = 147/229 (64%), Gaps = 5/229 (2%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LRI+LVGK+G GKSAT N++L FES+L +VT+T Q + W+GR +LVVDTP +F
Sbjct: 23 LRILLVGKSGCGKSATGNSLLRRPAFESRLRGQSVTRTSQAETGTWEGRSILVVDTPPIF 82
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+++ + ++I C PGPH ++LV QL R T E+ V+++K VFG ++HM+
Sbjct: 83 ESKAQNQDMDKDIGDCYLLCAPGPHVLLLVTQLGRFTAEDVMAVRMVKEVFGVGVMRHMI 142
Query: 504 LLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVE 680
+LFTRK+DL + SL +F+ D +L+ +++ECG RYCAF+N R E++ QL EL+
Sbjct: 143 VLFTRKEDLAEKSLEEFVTHTDNRSLRSLVQECGRRYCAFNN--RASGEEQQGQLAELMA 200
Query: 681 LIEQMVRDNDGAYYTDSIYEDVDERLRN----HKETLKILHEELQMECE 815
L+ ++ ++ +G+++++ ++ + LR H+E + +++ E E
Sbjct: 201 LVRRLEQECEGSFHSNDLFLHAETLLREGYSVHQEAYRCYLAKVRQEVE 249
>ref|NP_001230128.1| GTPase IMAP family member 4 isoform c [Mus musculus].
Length = 219
Score = 174 bits (440), Expect = 1e-43
Identities = 89/184 (48%), Positives = 124/184 (67%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LRIVL+GKTG+GKS+T N+ILGEK F S + ++TK C++ W G+EL+VVDTPG+F
Sbjct: 31 LRIVLLGKTGAGKSSTGNSILGEKVFNSGICAKSITKVCEKRVSTWDGKELVVVDTPGIF 90
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
DTE T REI+R + + PGPHA++LV+ L R+T EE K + I +FG+ A + M+
Sbjct: 91 DTEVPDADTQREITRYVALTSPGPHALLLVVPLGRYTVEEHKATQKILDMFGKQARRFMI 150
Query: 504 LLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVEL 683
LL TRKDDLED + +++ A Q ++ E NRYC F+N R AEKE Q +L+ L
Sbjct: 151 LLLTRKDDLEDTDIHEYLEKAPKFFQEVMHEFQNRYCLFNN--RASGAEKEEQKMQLLTL 208
Query: 684 IEQM 695
++ M
Sbjct: 209 VQSM 212
>ref|NP_787056.1| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 172 bits (436), Expect = 4e-43
Identities = 86/205 (41%), Positives = 137/205 (66%), Gaps = 2/205 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LR++LVG+TG+GKSAT N+ILG+K F S+L VT++C ASR W G ++ VVDTP +F
Sbjct: 27 LRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIF 86
Query: 324 DTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHM 500
+E + D C E +RC S PGPHA++LV QL R T ++ + + +K +FG+ +
Sbjct: 87 SSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMART 146
Query: 501 MLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
+++FTR++DL SL D++ D L+ ++ ECG R CA +N R +E+EAQ ++L+
Sbjct: 147 VVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNN--RATGSEREAQAEQLL 204
Query: 678 ELIEQMVRDNDGAYYTDSIYEDVDE 752
++ +VR++ GA+Y++ +YE V +
Sbjct: 205 GMVACLVREHGGAHYSNEVYELVQD 229
>ref|NP_032402.2| GTPase IMAP family member 1 [Mus musculus].
Length = 300
Score = 172 bits (436), Expect = 4e-43
Identities = 86/205 (41%), Positives = 137/205 (66%), Gaps = 2/205 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LR++LVG+TG+GKSAT N+ILG+K F S+L VT++C ASR W G ++ VVDTP +F
Sbjct: 27 LRLILVGRTGTGKSATGNSILGQKCFLSRLGAVPVTRSCTLASRMWAGWQVEVVDTPDIF 86
Query: 324 DTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHM 500
+E + D C E +RC S PGPHA++LV QL R T ++ + + +K +FG+ +
Sbjct: 87 SSEIPRTDPGCVETARCFVLSAPGPHALLLVTQLGRFTMQDSQALAAVKRLFGKQVMART 146
Query: 501 MLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
+++FTR++DL SL D++ D L+ ++ ECG R CA +N R +E+EAQ ++L+
Sbjct: 147 VVVFTRQEDLAGDSLQDYVHCTDNRALRDLVAECGGRVCALNN--RATGSEREAQAEQLL 204
Query: 678 ELIEQMVRDNDGAYYTDSIYEDVDE 752
++ +VR++ GA+Y++ +YE V +
Sbjct: 205 GMVACLVREHGGAHYSNEVYELVQD 229
>ref|NP_694815.1| GTPase IMAP family member 6 [Mus musculus].
Length = 305
Score = 166 bits (421), Expect = 2e-41
Identities = 84/195 (43%), Positives = 138/195 (70%), Gaps = 1/195 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
L+++LVGKTGSGKSAT N+ILG + FESK+S VT T Q+ +R+++G+EL V+DTP +F
Sbjct: 104 LQLLLVGKTGSGKSATGNSILGRQAFESKISARPVTTTFQKGTREFEGKELEVIDTPDIF 163
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+ + + T ++I C + PGPHA++LV+Q+ R+T E+Q + ++ +FG T L + +
Sbjct: 164 SPQNQPEATAKKI--CDLLASPGPHAVLLVIQVGRYTAEDQAVARCLQEIFGNTILAYTI 221
Query: 504 LLFTRKDDLEDGSLSDFIGD-ADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVE 680
L+FTRK+DL +GSL ++I + + +L + C R+C F+N ++ D E+EAQL++L+E
Sbjct: 222 LVFTRKEDLAEGSLEEYIQENNNKSLDVLDVACERRHCGFNNKAQGD--EQEAQLKKLME 279
Query: 681 LIEQMVRDNDGAYYT 725
+E ++ +N+G YT
Sbjct: 280 EVELILWENEGHCYT 294
>ref|NP_001070878.1| GTPase IMAP family member 8 [Mus musculus].
Length = 688
Score = 134 bits (338), Expect = 8e-32
Identities = 68/195 (34%), Positives = 126/195 (64%)
Frame = +3
Query: 138 STLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPG 317
STLR++L+GK G+GKSAT NTILG+ FESK S H VT CQ S +G++++V+DTP
Sbjct: 47 STLRLLLLGKQGAGKSATGNTILGKAVFESKFSDHMVTDRCQSESVSVRGKQVIVIDTPD 106
Query: 318 LFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKH 497
LF + + + + +C+ ++LV + +T+E+++T++ I G A +H
Sbjct: 107 LFSSLSCSEVRQQNLKQCLELLADDHCVLLLVTPIGHYTEEDRETIEGIWGKIGPKAYRH 166
Query: 498 MMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
M+++FTR+D+L++ SL ++I ++ +L+ +I+ G+R C N ++ D+ ++E Q+ +L+
Sbjct: 167 MIVVFTREDELDEDSLWNYI-ESKESLKELIKNIGSRRCCTFN-NKADKKQRELQVFKLL 224
Query: 678 ELIEQMVRDNDGAYY 722
+ IE ++ ++ Y+
Sbjct: 225 DAIELLMMESPEPYF 239
Score = 126 bits (317), Expect = 2e-29
Identities = 71/193 (36%), Positives = 114/193 (59%), Gaps = 4/193 (2%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
L I+L+G++G+GKSAT NTILG F S+L VT + Q R ++++VVDTP
Sbjct: 476 LNIILLGRSGAGKSATGNTILGRSAFFSQLRAQPVTSSSQSGKRTLDWQDVVVVDTPSFI 535
Query: 324 DT---EEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALK 494
T E+ EI C+ G VLVLQL R T E++ V+ ++A F E +K
Sbjct: 536 QTPGTEKDPSRLKEEIHHCLSLCEEGMKIFVLVLQLGRFTQEDEVVVEQLEASFEENIMK 595
Query: 495 HMMLLFTRKDDLEDGSLSDFIGDA-DANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQE 671
+M++LFTRK+DL DG L D+ + + L++I+++C R CAF+N + ++E Q++
Sbjct: 596 YMIVLFTRKEDLGDGDLHDYTNNTKNKALKKILKKCNGRVCAFNN--KETGEDQETQVKG 653
Query: 672 LVELIEQMVRDND 710
L+++ + ++ D
Sbjct: 654 LLKIANSLKKNYD 666
Score = 112 bits (279), Expect = 6e-25
Identities = 68/187 (36%), Positives = 111/187 (59%), Gaps = 1/187 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSP-HAVTKTCQQASRKWKGRELLVVDTPGL 320
LR++L+GK G GKSA N+ILG++ F+++ S VTK SR W+G+++L++D+P +
Sbjct: 285 LRVLLMGKRGVGKSAAGNSILGKQVFKTQFSEKQRVTKAFASHSRVWQGKKVLIIDSPEI 344
Query: 321 FDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHM 500
+ KLD + + ++ PGPHA +LV L + +IK +FGE K
Sbjct: 345 --SSWKLDESAVKN-----HTFPGPHAFLLVTPLGSSLKSDDDVFSIIKRIFGEKFTKFT 397
Query: 501 MLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVE 680
++LFTRK+D ED +L I + DA L + ++ G RY F+ R E+++Q+ +L+
Sbjct: 398 IVLFTRKEDFEDQALDKVIKENDA-LYNLTQKFGERYAIFN--YRASVEEEQSQVGKLLS 454
Query: 681 LIEQMVR 701
IE+MV+
Sbjct: 455 QIEKMVQ 461
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 27,196,453
Number of extensions: 642467
Number of successful extensions: 2698
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 2670
Number of HSP's successfully gapped: 18
Length of query: 324
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 222
Effective length of database: 12,553,887
Effective search space: 2786962914
Effective search space used: 2786962914
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens]. 337 7e-93
Alignment gi|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens]. 208 7e-54
Alignment gi|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens]. 190 2e-48
Alignment gi|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens]. 188 6e-48
Alignment gi|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens]. 181 1e-45
Alignment gi|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens]. 181 1e-45
Alignment gi|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens]. 176 3e-44
Alignment gi|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens]. 147 1e-35
Alignment gi|NP_001182067.1| GTPase IMAP family member-like [Homo sapiens]. 55 7e-08
>ref|NP_694968.1| GTPase IMAP family member 7 [Homo sapiens].
Length = 300
Score = 337 bits (865), Expect = 7e-93
Identities = 168/285 (58%), Positives = 224/285 (78%), Gaps = 1/285 (0%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELL 299
MA+S+D +LRIVLVGKTGSGKSATANTILGE+ F+S+++ AVTK CQ+ASR+W+GR+LL
Sbjct: 1 MAESEDRSLRIVLVGKTGSGKSATANTILGEEIFDSRIAAQAVTKNCQKASREWQGRDLL 60
Query: 300 VVDTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFG 479
VVDTPGLFDT+E LDTTC+EISRCI SCPGPHAIVLVL L R+T+EEQKTV LIKAVFG
Sbjct: 61 VVDTPGLFDTKESLDTTCKEISRCIISSCPGPHAIVLVLLLGRYTEEEQKTVALIKAVFG 120
Query: 480 ETALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEA 659
++A+KHM++LFTRK++LE S DFI DAD L+ I++ECGNR CAFSN +T +AEKE+
Sbjct: 121 KSAMKHMVILFTRKEELEGQSFHDFIADADVGLKSIVKECGNRCCAFSNSKKTSKAEKES 180
Query: 660 QLQELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETL-KILHEELQMECENIEKKYA 836
Q+QELVELIE+MV+ N+GAY++D IY+D +ERL+ +E L KI ++L E + +E+
Sbjct: 181 QVQELVELIEKMVQCNEGAYFSDDIYKDTEERLKQREEVLRKIYTDQLNEEIKLVEED-K 239
Query: 837 HXXXXXXXXXXXXVARRHSENVRTLTEEAEKSILEAVFSKIKNLL 971
H + ++ E ++ + EEAE++I + VF++I +L
Sbjct: 240 HKSEEEKEKEIKLLKLKYDEKIKNIREEAERNIFKDVFNRIWKML 284
>ref|NP_060796.1| GTPase IMAP family member 4 [Homo sapiens].
Length = 329
Score = 208 bits (529), Expect = 7e-54
Identities = 107/237 (45%), Positives = 160/237 (67%), Gaps = 1/237 (0%)
Frame = +3
Query: 126 DSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVV 305
+ ++S LRIVLVGKTG+GKSAT N+ILG K F S + ++TK C++ S WK EL+VV
Sbjct: 25 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVV 84
Query: 306 DTPGLFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGET 485
DTPG+FDTE T +EI RCI + PGPHA++LV+ L R+T+EE K + I +FGE
Sbjct: 85 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER 144
Query: 486 ALKHMMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQL 665
A M+L+FTRKDDL D +L D++ +A ++Q ++ G+RYCA +N + AE+EAQ
Sbjct: 145 ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNN--KATGAEQEAQR 202
Query: 666 QELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKETLKILHE-ELQMECENIEKKY 833
+L+ LI+++VR+N YT+ +Y+ +E ++ + ++ LH EL+ E I ++Y
Sbjct: 203 AQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQKQTQAMQELHRVELEREKARIREEY 259
>ref|NP_056475.1| GTPase IMAP family member 2 [Homo sapiens].
Length = 337
Score = 190 bits (482), Expect = 2e-48
Identities = 89/225 (39%), Positives = 147/225 (65%), Gaps = 11/225 (4%)
Frame = +3
Query: 138 STLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPG 317
S LRI+LVGKTG+GKSA N+IL ++ FESKL +TKTC ++ W RE++++DTP
Sbjct: 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80
Query: 318 LFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKH 497
+F ++ + +E+ RC S PGPH ++LV QL R+T ++Q+ + +K +FGE A+ H
Sbjct: 81 MFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGH 140
Query: 498 MMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQEL 674
++LFT K+DL GSL D++ D+D L +++ CG R CAF+N R + + ++ Q++EL
Sbjct: 141 TIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRICAFNN--RAEGSNQDDQVKEL 198
Query: 675 VELIEQMVRDNDGAYYTDSIYEDV----------DERLRNHKETL 779
++ IE ++ + +G +YT+ +Y + DER++ K++L
Sbjct: 199 MDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSL 243
>ref|NP_570115.1| GTPase IMAP family member 1 [Homo sapiens].
Length = 306
Score = 188 bits (478), Expect = 6e-48
Identities = 91/212 (42%), Positives = 143/212 (67%), Gaps = 2/212 (0%)
Frame = +3
Query: 111 ERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGR 290
E + ++ST R++LVG+TG+GKSAT N+ILG++RF S+L +VT+ C SR+W
Sbjct: 17 EENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC 76
Query: 291 ELLVVDTPGLFDTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIK 467
+ VVDTP +F ++ K D C E C S PGPHA++LV QL R T ++Q+ V+ ++
Sbjct: 77 HVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVR 136
Query: 468 AVFGETALKHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQ 644
+FGE LK M+++FTRK+DL GSL D++ + + L+ ++ ECG R CAF N R
Sbjct: 137 DMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDN--RATG 194
Query: 645 AEKEAQLQELVELIEQMVRDNDGAYYTDSIYE 740
E+EAQ+++L+ ++E +V ++ GA+Y++ +YE
Sbjct: 195 REQEAQVEQLLGMVEGLVLEHKGAHYSNEVYE 226
>ref|NP_001186506.1| GIMAP1-GIMAP5 protein [Homo sapiens].
Length = 511
Score = 181 bits (458), Expect = 1e-45
Identities = 85/201 (42%), Positives = 136/201 (67%), Gaps = 1/201 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LRI+LVGKTG GKSAT N+ILG+ FESKL +VT+TCQ + W GR++LVVDTP +F
Sbjct: 232 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIF 291
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+++ + I C S PGPH ++LV+QL R T ++ ++ +K VFG A++H++
Sbjct: 292 ESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVV 351
Query: 504 LLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVE 680
+LFT K+DL +L D++ + D +L+ ++REC RYCAF+N + E+ Q EL+
Sbjct: 352 ILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVE--EQRQQQAELLA 409
Query: 681 LIEQMVRDNDGAYYTDSIYED 743
+IE++ R+ +G+++++ ++ D
Sbjct: 410 VIERLGREREGSFHSNDLFLD 430
Score = 110 bits (275), Expect = 2e-24
Identities = 53/117 (45%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Frame = +3
Query: 111 ERSMADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGR 290
E + ++ST R++LVG+TG+GKSAT N+ILG++RF S+L +VT+ C SR+W
Sbjct: 17 EENAQSRQESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC 76
Query: 291 ELLVVDTPGLFDTE-EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVK 458
+ VVDTP +F ++ K D C E C S PGPHA++LV QL R T ++Q+ V+
Sbjct: 77 HVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVR 133
>ref|NP_060854.2| GTPase IMAP family member 5 [Homo sapiens].
Length = 307
Score = 181 bits (458), Expect = 1e-45
Identities = 85/201 (42%), Positives = 136/201 (67%), Gaps = 1/201 (0%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LRI+LVGKTG GKSAT N+ILG+ FESKL +VT+TCQ + W GR++LVVDTP +F
Sbjct: 28 LRIILVGKTGCGKSATGNSILGQPVFESKLRAQSVTRTCQVKTGTWNGRKVLVVDTPSIF 87
Query: 324 DTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKHMM 503
+++ + I C S PGPH ++LV+QL R T ++ ++ +K VFG A++H++
Sbjct: 88 ESQADTQELYKNIGDCYLLSAPGPHVLLLVIQLGRFTAQDTVAIRKVKEVFGTGAMRHVV 147
Query: 504 LLFTRKDDLEDGSLSDFIGDAD-ANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELVE 680
+LFT K+DL +L D++ + D +L+ ++REC RYCAF+N + E+ Q EL+
Sbjct: 148 ILFTHKEDLGGQALDDYVANTDNCSLKDLVRECERRYCAFNNWGSVE--EQRQQQAELLA 205
Query: 681 LIEQMVRDNDGAYYTDSIYED 743
+IE++ R+ +G+++++ ++ D
Sbjct: 206 VIERLGREREGSFHSNDLFLD 226
>ref|NP_078987.3| GTPase IMAP family member 6 [Homo sapiens].
Length = 292
Score = 176 bits (446), Expect = 3e-44
Identities = 95/210 (45%), Positives = 135/210 (64%), Gaps = 4/210 (1%)
Frame = +3
Query: 144 LRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPGLF 323
LR++L+GKTGSGKSAT N+ILG FESKLS VTKT Q+ SR+W G+EL V+DTP +
Sbjct: 41 LRLILMGKTGSGKSATGNSILGRDVFESKLSTRPVTKTSQRRSREWAGKELEVIDTPNIL 100
Query: 324 DTE---EKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALK 494
+ E D C + I S PGPHA++LV QL R TDE+Q+ V+ ++ VFG L
Sbjct: 101 SPQVSPEVADAIC----QAIVLSAPGPHAVLLVTQLGRFTDEDQQVVRRLQEVFGVGVLG 156
Query: 495 HMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQE 671
H +L+FTRK+DL GSL D++ + + L + R+C F+N R E+EAQL+E
Sbjct: 157 HTILVFTRKEDLAGGSLEDYVRETNNQALAWLDVTLARRHCGFNN--RAQGEEQEAQLRE 214
Query: 672 LVELIEQMVRDNDGAYYTDSIYEDVDERLR 761
L+E +E ++ +N+G YY++ Y+ + R
Sbjct: 215 LMEKVEAIMWENEGDYYSNKAYQYTQQNFR 244
>ref|NP_783161.1| GTPase IMAP family member 8 [Homo sapiens].
Length = 665
Score = 147 bits (372), Expect = 1e-35
Identities = 86/215 (40%), Positives = 132/215 (61%), Gaps = 4/215 (1%)
Frame = +3
Query: 141 TLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPG- 317
TL IVLVG++G+GKSAT N+ILG F S+L VTKT Q R W G+E++VVDTP
Sbjct: 438 TLNIVLVGRSGTGKSATGNSILGSLVFTSRLRAQPVTKTSQSGRRTWDGQEVVVVDTPSF 497
Query: 318 --LFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETAL 491
+ D E+ E+ RC+ G VLV QL R T+E++ V ++A+FG
Sbjct: 498 NQMLDVEKDPSRLEEEVKRCLSCCEKGDTFFVLVFQLGRFTEEDKTAVAKLEAIFGADFT 557
Query: 492 KHMMLLFTRKDDLEDGSLSDFIGDADAN-LQRIIRECGNRYCAFSNCSRTDQAEKEAQLQ 668
K+ ++LFTRK+DL G+L DF+ ++D L+RI ++CG R CAF+N T QA+ E Q++
Sbjct: 558 KYAIMLFTRKEDLGAGNLEDFMKNSDNKALRRIFKKCGRRVCAFNN-KETGQAQ-ETQVK 615
Query: 669 ELVELIEQMVRDNDGAYYTDSIYEDVDERLRNHKE 773
L+ + + +++ + Y + E+V + ++N +E
Sbjct: 616 ALLTKVNDLRKESGWSGYPHT-QENVSKLIKNVQE 649
Score = 145 bits (367), Expect = 4e-35
Identities = 78/197 (39%), Positives = 122/197 (61%)
Frame = +3
Query: 138 STLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPG 317
S LR++L+GK SGKSAT N ILG+ F+SK S V K CQ+ S + R+++V+DTP
Sbjct: 9 SELRLLLLGKCRSGKSATGNAILGKHVFKSKFSDQTVIKMCQRESWVLRERKVVVIDTPD 68
Query: 318 LFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKH 497
LF + + R I C+ S P HA++LV+ + T E+++T K I+ VFG A +H
Sbjct: 69 LFSSIACAEDKQRNIQHCLELSAPSLHALLLVIAIGHFTREDEETAKGIQQVFGAEARRH 128
Query: 498 MMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
++++FTRKDDL D L DFI + + L++++++ RYC F+N + E+ Q+ EL+
Sbjct: 129 IIIVFTRKDDLGDDLLQDFI-EKNKPLKQLVQDYEGRYCIFNN-KTNSKDEQITQVLELL 186
Query: 678 ELIEQMVRDNDGAYYTD 728
+E +V N G Y+ +
Sbjct: 187 RKVESLVNTNGGPYHVN 203
Score = 124 bits (312), Expect = 1e-28
Identities = 68/190 (35%), Positives = 113/190 (59%)
Frame = +3
Query: 138 STLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVTKTCQQASRKWKGRELLVVDTPG 317
S L ++LVGK G+GKSA N+ILG + F++ S +VT++ SR W+ +++ ++D P
Sbjct: 246 SELTVLLVGKRGAGKSAAGNSILGRQAFQTGFSEQSVTQSFLSESRSWRKKKVSIIDAPD 305
Query: 318 LFDTEEKLDTTCREISRCIFYSCPGPHAIVLVLQLNRHTDEEQKTVKLIKAVFGETALKH 497
+ + + +D+ R+ + C GPHA +LV L +T ++ + I+ FGE ++
Sbjct: 306 I-SSLKNIDSEVRK------HICTGPHAFLLVTPLGFYTKNDEAVLSTIQNNFGEKFFEY 358
Query: 498 MMLLFTRKDDLEDGSLSDFIGDADANLQRIIRECGNRYCAFSNCSRTDQAEKEAQLQELV 677
M++L TRK+DL D L F+ +++ L +I++C NRY AF+ R E++ Q EL+
Sbjct: 359 MIILLTRKEDLGDQDLDTFLRNSNKALYGLIQKCKNRYSAFN--YRATGEEEQRQADELL 416
Query: 678 ELIEQMVRDN 707
E IE MV N
Sbjct: 417 EKIESMVHQN 426
>ref|NP_001182067.1| GTPase IMAP family member-like [Homo sapiens].
Length = 217
Score = 55.5 bits (132), Expect = 7e-08
Identities = 45/208 (21%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Frame = +3
Query: 120 MADSKDSTLRIVLVGKTGSGKSATANTILGEKRFESKLSPHAVT------KTCQQASRKW 281
M D + + L G T SGKS+ N +LG F S +P +VT ++C S
Sbjct: 1 MTDPNKMIINLALFGMTQSGKSSAGNILLGSTDFHSSFAPCSVTTCCSLGRSCHLHSFMR 60
Query: 282 KG-----RELLVVDTPGLFDTEEKLDTTCREISRCI--FYSCPGPHAIVLVLQLNRHTDE 440
+G ++ V+DTPG + +E+ + + G H +LV + +
Sbjct: 61 RGGLEVALQVQVLDTPGYPHSRLSKKYVKQEVKEALAHHFGQGGLHLALLVQRADVPFCG 120
Query: 441 EQKT--VKLIKAVFGETALKHMMLLFTRKDDLEDGSLSD--FIGDADANLQRIIRECGNR 608
++ T V++I+ + G + + +LFT + +E+ L++ ++ +A L+ ++ ++
Sbjct: 121 QEVTDPVQMIQELLGHAWMNYTAILFTHAEKIEEAGLTEDKYLHEASDTLKTLLNSIQHK 180
Query: 609 YCAFSNCSRTDQAEKEAQLQELVELIEQ 692
Y ++ ++ L+ ++E I++
Sbjct: 181 YVFQYKKGKSLNEQRMKILERIMEFIKE 208
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 32,001,052
Number of extensions: 763275
Number of successful extensions: 3245
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3220
Number of HSP's successfully gapped: 12
Length of query: 324
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 221
Effective length of database: 14,901,872
Effective search space: 3293313712
Effective search space used: 3293313712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008577
(972 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr18 690 0.0
>Sscrofa_Chr18
|| Length = 61220071
Score = 690 bits (348), Expect = 0.0
Identities = 351/352 (99%)
Strand = Plus / Plus
Query: 461 gatcaaggctgtgtttggggaaacagccctgaagcacatgatgctcttgttcacgcgcaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6602895 gatcaaggctgtgtttggggaaacagccctgaagcacatgatgctcttgttcacgcgcaa 6602954
Query: 521 agacgacctggaggacggcagcctgagcgacttcatcggggatgcggatgcaaaccttca 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6602955 agacgacctggaggacggcagcctgagcgacttcatcggggatgcggatgcaaaccttca 6603014
Query: 581 aaggatcatcagggagtgtggaaaccgctactgcgccttcagtaactgcagcagaacaga 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6603015 aaggatcatcagggagtgtggaaaccgctactgcgccttcagtaactgcagcagaacaga 6603074
Query: 641 ccaggctgagaaggaagcccagctgcaggagctggtggagctgatcgagcagatggtgcg 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6603075 ccaggctgagaaggaagcccagctgcaggagctggtggagctgatcgagcagatggtgcg 6603134
Query: 701 ggacaatgacggggcttactacaccgacagcatctatgaggacgtagacgaaaggctgag 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6603135 ggacaatgacggggcttactacaccgacagcatctatgaggacgtagacgaaaggctgag 6603194
Query: 761 aaaccataaggaaaccttgaaaattctccatgaagagttacaaatggaatgt 812
|||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 6603195 aaaccataaggaaaccttgaaaattctcaatgaagagttacaaatggaatgt 6603246
Score = 182 bits (92), Expect = 2e-43
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 881 gaggaggcacagtgaaaacgtaagaactctaacggaagaagctgagaagagtatccttga 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6603315 gaggaggcacagtgaaaacgtaagaactctaacggaagaagctgagaagagtatccttga 6603374
Query: 941 ggctgttttcagtaagattaagaatctgcttt 972
||||||||||||||||||||||||||||||||
Sbjct: 6603375 ggctgttttcagtaagattaagaatctgcttt 6603406
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,174,756
Number of extensions: 142
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 2
Length of query: 972
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 951
Effective length of database: 2,808,413,156
Effective search space: 2670800911356
Effective search space used: 2670800911356
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)