Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096653.1| polymerase delta-interacting protein 3 [Bos ... 465 e-131
>ref|NP_001096653.1| polymerase delta-interacting protein 3 [Bos taurus].
Length = 421
Score = 465 bits (1197), Expect = e-131
Identities = 244/279 (87%), Positives = 251/279 (89%), Gaps = 1/279 (0%)
Frame = +2
Query: 95 MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKI 274
MADISLDELIRKRGAA+KGRLNARPGVGG+RSRVGIQQSLLSQPARTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAASKGRLNARPGVGGVRSRVGIQQSLLSQPARTATFQQRFDARQKI 60
Query: 275 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREK 454
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKP QVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPHQVADAREK 120
Query: 455 ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQN 634
ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAP+HAHPAGMRINVVNNHQAKQN
Sbjct: 121 ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPIHAHPAGMRINVVNNHQAKQN 180
Query: 635 LYDLDEDDDV-APIPSKQMKFVAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDAYTAPA 811
LYDLD+DDDV APIP+KQMKF A G+FLHH+AG ALPLTKVVQNDAYTAPA
Sbjct: 181 LYDLDDDDDVIAPIPTKQMKFAASGSFLHHMAGVSSSKLSMSKALPLTKVVQNDAYTAPA 240
Query: 812 LPSSVRTKALTNMSRTLVNXXXXXXXXXXXXXVLSPLEG 928
L SSVRTKALTNMSRTLVN VLSPLEG
Sbjct: 241 LSSSVRTKALTNMSRTLVNKEEPPKELPPAEPVLSPLEG 279
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,101,686
Number of extensions: 1128609
Number of successful extensions: 4379
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4360
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,306,398
Effective search space: 2961424386
Effective search space used: 2961424386
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531709.2| PREDICTED: similar to DNA polymerase delta inte... 457 e-129
>ref|XP_531709.2| PREDICTED: similar to DNA polymerase delta interacting protein 3
isoform 1 [Canis familiaris].
Length = 515
Score = 457 bits (1177), Expect = e-129
Identities = 241/284 (84%), Positives = 249/284 (87%), Gaps = 1/284 (0%)
Frame = +2
Query: 80 ARRCKMADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFD 259
ARR KMADISLDELIRKRGAA KGRLNARPGVGG+RSRVGIQQ LL QPARTATFQQRFD
Sbjct: 90 ARRRKMADISLDELIRKRGAATKGRLNARPGVGGVRSRVGIQQGLLGQPARTATFQQRFD 149
Query: 260 ARQKIGLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVA 439
ARQKIGLSDARLKLGV+DAREKLLQKDARFRIKGKVQDAREMLNSRKQQ TVPQKPRQVA
Sbjct: 150 ARQKIGLSDARLKLGVQDAREKLLQKDARFRIKGKVQDAREMLNSRKQQVTVPQKPRQVA 209
Query: 440 DAREKISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNH 619
DAREKISLKR+SPA F+SPPIGTVTPALKLTKTIQVPQQKAMAP+H HPAGMRINVVNNH
Sbjct: 210 DAREKISLKRSSPATFLSPPIGTVTPALKLTKTIQVPQQKAMAPLHTHPAGMRINVVNNH 269
Query: 620 QAKQNLYDLDEDDD-VAPIPSKQMKFVAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDA 796
AKQNLYDL+EDDD VAPIPSKQMKF A +FLHHVAG ALPLTKVVQNDA
Sbjct: 270 PAKQNLYDLEEDDDSVAPIPSKQMKFAASSSFLHHVAGLSSSKFSMSKALPLTKVVQNDA 329
Query: 797 YTAPALPSSVRTKALTNMSRTLVNXXXXXXXXXXXXXVLSPLEG 928
YTAPALPSSVRTKALT+MSRTLVN VLSPLEG
Sbjct: 330 YTAPALPSSVRTKALTSMSRTLVNKEESPKELPPAEPVLSPLEG 373
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,677,932
Number of extensions: 1152161
Number of successful extensions: 4754
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4731
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 207
Effective length of database: 15,474,232
Effective search space: 3203166024
Effective search space used: 3203166024
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126034.2| PREDICTED: polymerase delta-interacting prot... 450 e-127
>ref|XP_003126034.2| PREDICTED: polymerase delta-interacting protein 3-like [Sus
scrofa].
Length = 619
Score = 450 bits (1158), Expect = e-127
Identities = 235/258 (91%), Positives = 235/258 (91%)
Frame = +2
Query: 155 LNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQ 334
LNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQ
Sbjct: 220 LNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKIGLSDARLKLGVKDAREKLLQ 279
Query: 335 KDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVT 514
KDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVT
Sbjct: 280 KDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREKISLKRNSPAAFMSPPIGTVT 339
Query: 515 PALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKF 694
PALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKF
Sbjct: 340 PALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQNLYDLDEDDDVAPIPSKQMKF 399
Query: 695 VAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNXX 874
VAPGNFLHHVAG ALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVN
Sbjct: 400 VAPGNFLHHVAGLSSSKLSMSKALPLTKVVQNDAYTAPALPSSVRTKALTNMSRTLVNKE 459
Query: 875 XXXXXXXXXXXVLSPLEG 928
VLSPLEG
Sbjct: 460 EPPKELPPAEPVLSPLEG 477
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,975,754
Number of extensions: 727643
Number of successful extensions: 2883
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2872
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 210
Effective length of database: 8,879,129
Effective search space: 1864617090
Effective search space used: 1864617090
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848742.1| polymerase delta-interacting protein 3 [Mus mus... 442 e-124
>ref|NP_848742.1| polymerase delta-interacting protein 3 [Mus musculus].
Length = 420
Score = 442 bits (1138), Expect = e-124
Identities = 229/279 (82%), Positives = 241/279 (86%), Gaps = 1/279 (0%)
Frame = +2
Query: 95 MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKI 274
MAD+SLDELIRKRG AAKGRL+ RPG+GG+RSRVGIQ SL++QPARTATFQQRFDARQKI
Sbjct: 1 MADLSLDELIRKRGTAAKGRLSVRPGIGGVRSRVGIQHSLVNQPARTATFQQRFDARQKI 60
Query: 275 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREK 454
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQ TVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQGTVPQKPRQVADAREK 120
Query: 455 ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQN 634
ISLKR SPAAF SPPIGTVTPALKLTKTIQVPQQKAM P+HAHPAGMRINVVNNHQAKQN
Sbjct: 121 ISLKRRSPAAFTSPPIGTVTPALKLTKTIQVPQQKAMVPLHAHPAGMRINVVNNHQAKQN 180
Query: 635 LYDLDEDDD-VAPIPSKQMKFVAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDAYTAPA 811
LYDLDEDDD V P+P KQMKF A G+ +HH+ G ALPLTKVVQNDAYTAP
Sbjct: 181 LYDLDEDDDIVVPVPPKQMKFAATGSLVHHMTGLSSSKLSMSKALPLTKVVQNDAYTAPV 240
Query: 812 LPSSVRTKALTNMSRTLVNXXXXXXXXXXXXXVLSPLEG 928
LPSSVRTKALT+MSRTLVN VLSPLEG
Sbjct: 241 LPSSVRTKALTSMSRTLVNKEEPPKELPPAEPVLSPLEG 279
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,989,385
Number of extensions: 944349
Number of successful extensions: 3533
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3499
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 208
Effective length of database: 12,583,923
Effective search space: 2617455984
Effective search space used: 2617455984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_115687.2| polymerase delta-interacting protein 3 isoform ... 453 e-128
Alignment gi|NP_835237.1| polymerase delta-interacting protein 3 isoform ... 382 e-106
>ref|NP_115687.2| polymerase delta-interacting protein 3 isoform 1 [Homo sapiens].
Length = 421
Score = 453 bits (1166), Expect = e-128
Identities = 236/279 (84%), Positives = 247/279 (88%), Gaps = 1/279 (0%)
Frame = +2
Query: 95 MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKI 274
MADISLDELIRKRGAAAKGRLNARPGVGG+RSRVGIQQ LLSQ RTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 275 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREK 454
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQ+TVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 455 ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQN 634
ISLKR+SPAAF++PPIGTVTPALKLTKTIQVPQQKAMAP+H HPAGMRINVVNNHQAKQN
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQVPQQKAMAPLHPHPAGMRINVVNNHQAKQN 180
Query: 635 LYDLDEDDD-VAPIPSKQMKFVAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDAYTAPA 811
LYDLDEDDD +A +P+KQMKF A G FLHH+AG ALPLTKVVQNDAYTAPA
Sbjct: 181 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 240
Query: 812 LPSSVRTKALTNMSRTLVNXXXXXXXXXXXXXVLSPLEG 928
LPSS+RTKALTNMSRTLVN VLSPLEG
Sbjct: 241 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEG 279
>ref|NP_835237.1| polymerase delta-interacting protein 3 isoform 2 [Homo sapiens].
Length = 392
Score = 382 bits (980), Expect = e-106
Identities = 209/279 (74%), Positives = 219/279 (78%), Gaps = 1/279 (0%)
Frame = +2
Query: 95 MADISLDELIRKRGAAAKGRLNARPGVGGIRSRVGIQQSLLSQPARTATFQQRFDARQKI 274
MADISLDELIRKRGAAAKGRLNARPGVGG+RSRVGIQQ LLSQ RTATFQQRFDARQKI
Sbjct: 1 MADISLDELIRKRGAAAKGRLNARPGVGGVRSRVGIQQGLLSQSTRTATFQQRFDARQKI 60
Query: 275 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQSTVPQKPRQVADAREK 454
GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQ+TVPQKPRQVADAREK
Sbjct: 61 GLSDARLKLGVKDAREKLLQKDARFRIKGKVQDAREMLNSRKQQTTVPQKPRQVADAREK 120
Query: 455 ISLKRNSPAAFMSPPIGTVTPALKLTKTIQVPQQKAMAPVHAHPAGMRINVVNNHQAKQN 634
ISLKR+SPAAF++PPIGTVTPALKLTKTIQ N
Sbjct: 121 ISLKRSSPAAFINPPIGTVTPALKLTKTIQ-----------------------------N 151
Query: 635 LYDLDEDDD-VAPIPSKQMKFVAPGNFLHHVAGXXXXXXXXXXALPLTKVVQNDAYTAPA 811
LYDLDEDDD +A +P+KQMKF A G FLHH+AG ALPLTKVVQNDAYTAPA
Sbjct: 152 LYDLDEDDDGIASVPTKQMKFAASGGFLHHMAGLSSSKLSMSKALPLTKVVQNDAYTAPA 211
Query: 812 LPSSVRTKALTNMSRTLVNXXXXXXXXXXXXXVLSPLEG 928
LPSS+RTKALTNMSRTLVN VLSPLEG
Sbjct: 212 LPSSIRTKALTNMSRTLVNKEEPPKELPAAEPVLSPLEG 250
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,929,992
Number of extensions: 1135543
Number of successful extensions: 4413
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4368
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 207
Effective length of database: 14,934,836
Effective search space: 3091511052
Effective search space used: 3091511052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008580
(929 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 781 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 781 bits (394), Expect = 0.0
Identities = 394/394 (100%)
Strand = Plus / Plus
Query: 153 gcctcaacgccagaccaggagttggaggtatccgatctcgtgtcgggatccaacagagcc 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524349 gcctcaacgccagaccaggagttggaggtatccgatctcgtgtcgggatccaacagagcc 3524408
Query: 213 ttctcagccagccagcacgcaccgccaccttccagcagagatttgatgcccggcagaaga 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524409 ttctcagccagccagcacgcaccgccaccttccagcagagatttgatgcccggcagaaga 3524468
Query: 273 ttggcctctcagatgcccggctcaagctgggagtcaaagatgcccgggaaaagcttttac 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524469 ttggcctctcagatgcccggctcaagctgggagtcaaagatgcccgggaaaagcttttac 3524528
Query: 333 agaaagatgcccggttccggatcaaagggaaagtgcaagatgccagagagatgctgaact 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524529 agaaagatgcccggttccggatcaaagggaaagtgcaagatgccagagagatgctgaact 3524588
Query: 393 cccgcaaacagcagagcacagtgccccagaagccccgccaggtggctgatgcccgggaga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524589 cccgcaaacagcagagcacagtgccccagaagccccgccaggtggctgatgcccgggaga 3524648
Query: 453 agatcagcctgaagcggaattctcctgctgccttcatgagcccacccatcgggacagtga 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3524649 agatcagcctgaagcggaattctcctgctgccttcatgagcccacccatcgggacagtga 3524708
Query: 513 cccctgctctaaagctcactaaaaccatccaggt 546
||||||||||||||||||||||||||||||||||
Sbjct: 3524709 cccctgctctaaagctcactaaaaccatccaggt 3524742
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 724 ggctgggctgagcagttccaagctttccatgtccaaggcccttcctctcaccaaagtggt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530582 ggctgggctgagcagttccaagctttccatgtccaaggcccttcctctcaccaaagtggt 3530641
Query: 784 tcaaaatgatgcatacacagctcctgctctcccttcctctgttcgaacaaaagccttgac 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530642 tcaaaatgatgcatacacagctcctgctctcccttcctctgttcgaacaaaagccttgac 3530701
Query: 844 caacatgtcccggactctagtgaacaaggaggagccccccaaagaactgccgcctgctga 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530702 caacatgtcccggactctagtgaacaaggaggagccccccaaagaactgccgcctgctga 3530761
Query: 904 g 904
|
Sbjct: 3530762 g 3530762
Score = 295 bits (149), Expect = 2e-77
Identities = 152/153 (99%)
Strand = Plus / Plus
Query: 1 cgccggaagccgctagttgctccacagcggccgaaggggcgggctcgggggccgagggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3632389 cgccggaagccgctagttgctccacagcggccgaaggggcgggctcgggggccgagggac 3632448
Query: 61 cctgaggtgctcgcggcctgctcggcggtgcaagatggcggacatctccctggacgagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3632449 cctgaggtgctcgcggcctgctcggcggtgcaagatggcggacatctccctggacgagct 3632508
Query: 121 catccggaagcgcggggctgctgcgaaggggcg 153
||||||||||||||||||||||||||| |||||
Sbjct: 3632509 catccggaagcgcggggctgctgcgaaagggcg 3632541
Score = 192 bits (97), Expect = 2e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 629 cagaatttatatgacctggatgaagacgatgatgtagctcccattcctagtaaacagatg 688
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Sbjct: 3528353 cagaatttatatgacctggatgaagacgatgatgtagctcccattcctagtaaacagatg 3528412
Query: 689 aaatttgtagccccgggcaactttctccaccatgtgg 725
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Sbjct: 3528413 aaatttgtagccccgggcaactttctccaccatgtgg 3528449
Score = 176 bits (89), Expect = 1e-41
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 543 aggttccacagcagaaggccatggcaccagttcatgcccatcctgctggaatgaggatca 602
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Sbjct: 3525488 aggttccacagcagaaggccatggcaccagttcatgcccatcctgctggaatgaggatca 3525547
Query: 603 atgtcgtcaataaccaccaggccaaacag 631
|||||||||||||||||||||||||||||
Sbjct: 3525548 atgtcgtcaataaccaccaggccaaacag 3525576
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,572,813
Number of extensions: 121
Number of successful extensions: 121
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 5
Length of query: 929
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 908
Effective length of database: 2,808,413,156
Effective search space: 2550039145648
Effective search space used: 2550039145648
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)