Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068809.1| cdc42 effector protein 2 [Bos taurus]. 316 2e-86
Alignment gi|NP_001039909.1| cdc42 effector protein 3 [Bos taurus]. 136 3e-32
Alignment gi|NP_001068963.1| cdc42 effector protein 1 [Bos taurus]. 66 5e-11
Alignment gi|NP_001039936.1| cdc42 effector protein 4 [Bos taurus]. 60 2e-09
Alignment gi|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPas... 51 2e-06
Alignment gi|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPas... 51 2e-06
>ref|NP_001068809.1| cdc42 effector protein 2 [Bos taurus].
Length = 210
Score = 316 bits (809), Expect = 2e-86
Identities = 159/196 (81%), Positives = 166/196 (84%)
Frame = +3
Query: 405 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 584
MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGG+D FGDISFLQG
Sbjct: 1 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGNDTFGDISFLQG 60
Query: 585 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 764
KFHLLPGTA++E +ED FE+PFQFTRTATL GRELPDGPSPLLKNAISLPVIGGPQALT
Sbjct: 61 KFHLLPGTAVDETQEDSGFEMPFQFTRTATLCGRELPDGPSPLLKNAISLPVIGGPQALT 120
Query: 765 LPTAQAPPKPPRLHLETXXXXXXXXXXEAGCVDIWRIPEAGSAHSGLTPESGAEEPFXXX 944
LP AQAPPKPPRLHLET EAG VD+WRIPEAG+AHS LT ESGAEEPF
Sbjct: 121 LPAAQAPPKPPRLHLET----PQASPQEAGTVDVWRIPEAGAAHSELTTESGAEEPFLSH 176
Query: 945 XXXXXXXXVDLGPSIL 992
VDLGPSIL
Sbjct: 177 ASSLLSLHVDLGPSIL 192
>ref|NP_001039909.1| cdc42 effector protein 3 [Bos taurus].
Length = 254
Score = 136 bits (342), Expect = 3e-32
Identities = 80/148 (54%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Frame = +3
Query: 405 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 581
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 582 GKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQAL 761
G + LLPG +E G F +F R + S + PSP+LKNAISLP IGG QAL
Sbjct: 61 GNYELLPGN--QEKAHMGQFPGHNEFFRANSTSDSMFTETPSPVLKNAISLPTIGGSQAL 118
Query: 762 TLPTAQ-----------APPKPPRLHLE 812
LP P K PRL E
Sbjct: 119 MLPLLSPVTFSSKQESFGPGKLPRLSCE 146
>ref|NP_001068963.1| cdc42 effector protein 1 [Bos taurus].
Length = 361
Score = 65.9 bits (159), Expect = 5e-11
Identities = 44/108 (40%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Frame = +3
Query: 441 SRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEE 620
S +GKK L++DMISPPLGDFRHT+H+G GG D+FGD SFL G+
Sbjct: 26 SSQGKKR-----LTADMISPPLGDFRHTMHVGRGG--DVFGDTSFLSNHG---GGSGSTH 75
Query: 621 GEEDGSFELPFQFTRTATLSGRELPDGP---------SPLLKNAISLP 737
G Q R R + P SP++KNAISLP
Sbjct: 76 RSPRGFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAISLP 123
>ref|NP_001039936.1| cdc42 effector protein 4 [Bos taurus].
Length = 347
Score = 60.5 bits (145), Expect = 2e-09
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L G +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDGESVDEQAPSS 72
Query: 636 SFE-----LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTL 767
S L +F +++ T S RE D L +KNA+SLP + +A
Sbjct: 73 SSSSKRSLLSRKFRASKRSQSVTRSDREQRDVLGSLRDSALFVKNAMSLPQLNEKEAAEK 132
Query: 768 PTAQAP 785
+++ P
Sbjct: 133 GSSKLP 138
>ref|XP_002695438.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 2 [Bos taurus].
Length = 153
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVLKQLGPAQPKKRPERGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
>ref|XP_002695437.1| PREDICTED: CDC42 effector protein (Rho GTPase binding) 5-like
isoform 1 [Bos taurus].
Length = 153
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVLKQLGPAQPKKRPERGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,338,987
Number of extensions: 1216760
Number of successful extensions: 6897
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6841
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,273,310
Effective search space: 3254314680
Effective search space used: 3254314680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 ... 322 3e-88
Alignment gi|XP_532935.1| PREDICTED: similar to Cdc42 effector protein 3 ... 137 2e-32
Alignment gi|XP_538388.2| PREDICTED: similar to CDC42 effector protein (R... 63 5e-10
Alignment gi|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 ... 60 4e-09
Alignment gi|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 ... 51 2e-06
>ref|XP_540865.1| PREDICTED: similar to Cdc42 effector protein 2 [Canis familiaris].
Length = 214
Score = 322 bits (825), Expect = 3e-88
Identities = 161/196 (82%), Positives = 164/196 (83%)
Frame = +3
Query: 405 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 584
MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG
Sbjct: 1 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 60
Query: 585 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 764
KFHLLPGT +E EEDGS +LPFQFTRT TL GRELPDGPSPLLKNAISLPVIGGPQALT
Sbjct: 61 KFHLLPGTVVEGPEEDGSLDLPFQFTRTGTLCGRELPDGPSPLLKNAISLPVIGGPQALT 120
Query: 765 LPTAQAPPKPPRLHLETXXXXXXXXXXEAGCVDIWRIPEAGSAHSGLTPESGAEEPFXXX 944
LPT QAPPKPPRLHLE EAG VDIWRIPEAGS H+GLTPE GAEEPF
Sbjct: 121 LPTTQAPPKPPRLHLEIPQPSPQPSPQEAGSVDIWRIPEAGSVHNGLTPELGAEEPFLSH 180
Query: 945 XXXXXXXXVDLGPSIL 992
VDLGPSIL
Sbjct: 181 ASSLLSLHVDLGPSIL 196
>ref|XP_532935.1| PREDICTED: similar to Cdc42 effector protein 3 [Canis familiaris].
Length = 253
Score = 137 bits (345), Expect = 2e-32
Identities = 80/148 (54%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Frame = +3
Query: 405 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 581
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 582 GKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQAL 761
G + LLPG +E G F +F R + S + PSP+LKNAISLP IGG QAL
Sbjct: 61 GNYELLPGN--QEKARAGQFPGHSEFFRANSTSDSMFTETPSPVLKNAISLPTIGGSQAL 118
Query: 762 TLPTAQ-----------APPKPPRLHLE 812
LP P K PRL E
Sbjct: 119 MLPLLSPVTFNSKQESFGPAKLPRLSCE 146
>ref|XP_538388.2| PREDICTED: similar to CDC42 effector protein (Rho GTPase binding) 1
[Canis familiaris].
Length = 164
Score = 62.8 bits (151), Expect = 5e-10
Identities = 50/139 (35%), Positives = 61/139 (43%), Gaps = 17/139 (12%)
Frame = +3
Query: 372 PWQPGLGAEVAMST-KVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGG 548
P G G AMS K+ S GK+ L++DMISPPLGDFRHT+H+G GG
Sbjct: 2 PGPQGAGGAPAMSLGKLSPVGWVSSSHGKRR-----LTADMISPPLGDFRHTMHVGRGG- 55
Query: 549 SDMFGDISFLQGKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGREL------------ 692
D+FGD SFL G G+ P F R +
Sbjct: 56 -DVFGDTSFLSN----------HGGSSGGTHRSPRSFLAKKLQQVRRVGAPPRRMASPPA 104
Query: 693 ----PDGPSPLLKNAISLP 737
P SP++KNAISLP
Sbjct: 105 PSPAPPAISPIIKNAISLP 123
>ref|XP_533114.2| PREDICTED: similar to Cdc42 effector protein 4 [Canis familiaris].
Length = 352
Score = 59.7 bits (143), Expect = 4e-09
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L G +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDGESLDEQASSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A +
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGS 132
Query: 774 AQAP 785
+ P
Sbjct: 133 GKLP 136
>ref|XP_854183.1| PREDICTED: similar to CDC42 effector protein 5 [Canis familiaris].
Length = 153
Score = 50.8 bits (120), Expect = 2e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVLKQLGPAQPKKRPERGTLS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,168,031
Number of extensions: 1260975
Number of successful extensions: 7286
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7230
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,440,896
Effective search space: 3520524288
Effective search space used: 3520524288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Su... 349 1e-96
Alignment gi|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like iso... 136 2e-32
Alignment gi|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like iso... 57 1e-08
Alignment gi|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like iso... 57 1e-08
Alignment gi|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like iso... 57 1e-08
Alignment gi|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like iso... 57 1e-08
Alignment gi|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Su... 51 1e-06
>ref|XP_003122586.1| PREDICTED: cdc42 effector protein 2-like [Sus scrofa].
Length = 214
Score = 349 bits (896), Expect = 1e-96
Identities = 175/196 (89%), Positives = 175/196 (89%)
Frame = +3
Query: 405 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 584
MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG
Sbjct: 1 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 60
Query: 585 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 764
KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT
Sbjct: 61 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 120
Query: 765 LPTAQAPPKPPRLHLETXXXXXXXXXXEAGCVDIWRIPEAGSAHSGLTPESGAEEPFXXX 944
LPTAQAPPKPPRLHLET EAGCVDIWRIPEAGSAHSGLTPESGAEEPF
Sbjct: 121 LPTAQAPPKPPRLHLETPQPSPQPSPQEAGCVDIWRIPEAGSAHSGLTPESGAEEPFLSH 180
Query: 945 XXXXXXXXVDLGPSIL 992
VDLGPSIL
Sbjct: 181 ASSLLSLHVDLGPSIL 196
>ref|XP_003125272.1| PREDICTED: cdc42 effector protein 3-like isoform 1 [Sus scrofa].
Length = 254
Score = 136 bits (342), Expect = 2e-32
Identities = 80/148 (54%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Frame = +3
Query: 405 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 581
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 582 GKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQAL 761
G + LLPG +E G F +F R + S + PSP+LKNAISLP IGG QAL
Sbjct: 61 GNYELLPGN--QEKAHMGQFPGHNEFFRANSTSDSMFTETPSPVLKNAISLPTIGGSQAL 118
Query: 762 TLPTAQ-----------APPKPPRLHLE 812
LP P K PRL E
Sbjct: 119 MLPLLSPVTFNSKQESFGPGKLPRLSCE 146
>ref|XP_003358042.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDSESMDEQASSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A +
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGS 132
Query: 774 AQAP 785
++ P
Sbjct: 133 SKLP 136
>ref|XP_003131291.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDSESMDEQASSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A +
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGS 132
Query: 774 AQAP 785
++ P
Sbjct: 133 SKLP 136
>ref|XP_003358041.1| PREDICTED: cdc42 effector protein 4-like isoform 2 [Sus scrofa].
Length = 357
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDSESMDEQASSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A +
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGS 132
Query: 774 AQAP 785
++ P
Sbjct: 133 SKLP 136
>ref|XP_003131290.1| PREDICTED: cdc42 effector protein 4-like isoform 1 [Sus scrofa].
Length = 357
Score = 57.4 bits (137), Expect = 1e-08
Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K L +++E
Sbjct: 15 KRRSRVDLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGELDSESMDEQASSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A +
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGS 132
Query: 774 AQAP 785
++ P
Sbjct: 133 SKLP 136
>ref|XP_003127481.2| PREDICTED: cdc42 effector protein 5-like [Sus scrofa].
Length = 153
Score = 50.8 bits (120), Expect = 1e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVLKQLGPAQPKKRPERGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,543,286
Number of extensions: 795988
Number of successful extensions: 4572
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 4523
Number of HSP's successfully gapped: 7
Length of query: 331
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,879,129
Effective search space: 2059957928
Effective search space used: 2059957928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081048.1| cdc42 effector protein 2 [Mus musculus]. 316 2e-86
Alignment gi|NP_080790.1| cdc42 effector protein 3 [Mus musculus]. 136 2e-32
Alignment gi|NP_081495.1| cdc42 effector protein 1 [Mus musculus]. 62 9e-10
Alignment gi|NP_001156818.1| cdc42 effector protein 4 [Mus musculus]. 57 3e-08
Alignment gi|NP_064390.1| cdc42 effector protein 4 [Mus musculus]. 57 3e-08
Alignment gi|NP_067429.1| cdc42 effector protein 5 [Mus musculus]. 50 3e-06
>ref|NP_081048.1| cdc42 effector protein 2 [Mus musculus].
Length = 214
Score = 316 bits (809), Expect = 2e-86
Identities = 157/196 (80%), Positives = 165/196 (84%)
Frame = +3
Query: 405 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 584
MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGG DMFGDISFLQG
Sbjct: 1 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGDDMFGDISFLQG 60
Query: 585 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 764
KFHLLPGTA+EE EEDGSF+LPFQFTRT T+ GRELPDG SPLLKNAISLPVIGGPQALT
Sbjct: 61 KFHLLPGTAVEEAEEDGSFDLPFQFTRTTTVCGRELPDGLSPLLKNAISLPVIGGPQALT 120
Query: 765 LPTAQAPPKPPRLHLETXXXXXXXXXXEAGCVDIWRIPEAGSAHSGLTPESGAEEPFXXX 944
LPTAQAPPKPPRLHLE+ AG VD+WRIPEAGS H+G++PE AEEPF
Sbjct: 121 LPTAQAPPKPPRLHLESPQPSPQPSPQGAGNVDVWRIPEAGSPHNGMSPEPEAEEPFLSH 180
Query: 945 XXXXXXXXVDLGPSIL 992
VDLGPSIL
Sbjct: 181 ASSLLSLHVDLGPSIL 196
>ref|NP_080790.1| cdc42 effector protein 3 [Mus musculus].
Length = 254
Score = 136 bits (343), Expect = 2e-32
Identities = 80/148 (54%), Positives = 89/148 (60%), Gaps = 12/148 (8%)
Frame = +3
Query: 405 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 581
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 582 GKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQAL 761
G + LLPG +E G F F R + S + PSP+LKNAISLP IGG QAL
Sbjct: 61 GNYELLPGN--QEKAHSGQFPGHNDFFRANSTSDSMFTETPSPVLKNAISLPTIGGSQAL 118
Query: 762 TLPTAQ-----------APPKPPRLHLE 812
LP PK PRL E
Sbjct: 119 MLPLLSPVTFHSKQESFGRPKLPRLSCE 146
>ref|NP_081495.1| cdc42 effector protein 1 [Mus musculus].
Length = 409
Score = 61.6 bits (148), Expect = 9e-10
Identities = 49/135 (36%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Frame = +3
Query: 378 QPGLGAEVAMSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDM 557
Q G GA K+ S GK+ L++DMISPPLGDFRHT+H+G GG D+
Sbjct: 5 QGGTGAPTMSLGKLSPVGWVSSSHGKRR-----LTADMISPPLGDFRHTMHVGRGG--DV 57
Query: 558 FGDISFL------QGKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGREL--------- 692
FGD SFL G H P + + Q R + R +
Sbjct: 58 FGDTSFLSNHGGRSGNTHRSPRSFLAR---------KLQQVRRVGVPPRRMASPAAPSPA 108
Query: 693 PDGPSPLLKNAISLP 737
P SP++KNAISLP
Sbjct: 109 PPPISPIIKNAISLP 123
>ref|NP_001156818.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 56.6 bits (135), Expect = 3e-08
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Frame = +3
Query: 441 SRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEE 620
S K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K +++E
Sbjct: 10 SSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLTSKAREADDESLDE 67
Query: 621 GEEDGSFEL------PFQFTRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALT 764
L + +++ T RE D L +KNA+SLP + +A
Sbjct: 68 QASASKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAE 127
Query: 765 LPTAQAP 785
+++ P
Sbjct: 128 KDSSKLP 134
>ref|NP_064390.1| cdc42 effector protein 4 [Mus musculus].
Length = 349
Score = 56.6 bits (135), Expect = 3e-08
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 12/127 (9%)
Frame = +3
Query: 441 SRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEE 620
S K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K +++E
Sbjct: 10 SSVNSKRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLTSKAREADDESLDE 67
Query: 621 GEEDGSFEL------PFQFTRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALT 764
L + +++ T RE D L +KNA+SLP + +A
Sbjct: 68 QASASKLSLLSRKFRGSKRSQSVTRGDREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAE 127
Query: 765 LPTAQAP 785
+++ P
Sbjct: 128 KDSSKLP 134
>ref|NP_067429.1| cdc42 effector protein 5 [Mus musculus].
Length = 150
Score = 50.1 bits (118), Expect = 3e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVMKQLGPAQPKKRLDRGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,366,233
Number of extensions: 979729
Number of successful extensions: 5132
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5065
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,553,887
Effective search space: 2874840123
Effective search space used: 2874840123
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006770.1| cdc42 effector protein 2 [Homo sapiens]. 320 1e-87
Alignment gi|NP_006440.2| cdc42 effector protein 3 [Homo sapiens]. 136 3e-32
Alignment gi|NP_689449.1| cdc42 effector protein 1 [Homo sapiens]. 60 2e-09
Alignment gi|NP_036253.2| cdc42 effector protein 4 [Homo sapiens]. 59 7e-09
Alignment gi|NP_659494.2| cdc42 effector protein 5 [Homo sapiens]. 50 2e-06
>ref|NP_006770.1| cdc42 effector protein 2 [Homo sapiens].
Length = 210
Score = 320 bits (820), Expect = 1e-87
Identities = 162/196 (82%), Positives = 167/196 (85%)
Frame = +3
Query: 405 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 584
MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG
Sbjct: 1 MSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQG 60
Query: 585 KFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQALT 764
KFHLLPGT +E EEDG+F+LPFQFTRTAT+ GRELPDGPSPLLKNAISLPVIGGPQALT
Sbjct: 61 KFHLLPGTMVEGPEEDGTFDLPFQFTRTATVCGRELPDGPSPLLKNAISLPVIGGPQALT 120
Query: 765 LPTAQAPPKPPRLHLETXXXXXXXXXXEAGCVDIWRIPEAGSAHSGLTPESGAEEPFXXX 944
LPTAQAPPKPPRLHLET E G VDIWRIPE GS +SGLTPESGAEEPF
Sbjct: 121 LPTAQAPPKPPRLHLET----PQPSPQEGGSVDIWRIPETGSPNSGLTPESGAEEPFLSN 176
Query: 945 XXXXXXXXVDLGPSIL 992
VDLGPSIL
Sbjct: 177 ASSLLSLHVDLGPSIL 192
>ref|NP_006440.2| cdc42 effector protein 3 [Homo sapiens].
Length = 254
Score = 136 bits (342), Expect = 3e-32
Identities = 80/148 (54%), Positives = 90/148 (60%), Gaps = 12/148 (8%)
Frame = +3
Query: 405 MSTKVPIYLKRGS-RKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQ 581
M K PIYLK + +KGKK KLRD+LS DMISPPLGDFRHTIHIG G D+FGDISFLQ
Sbjct: 1 MPAKTPIYLKAANNKKGKKFKLRDILSPDMISPPLGDFRHTIHIGKEGQHDVFGDISFLQ 60
Query: 582 GKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGPSPLLKNAISLPVIGGPQAL 761
G + LLPG +E G F +F R + S + PSP+LKNAISLP IGG QAL
Sbjct: 61 GNYELLPGN--QEKAHLGQFPGHNEFFRANSTSDSVFTETPSPVLKNAISLPTIGGSQAL 118
Query: 762 TLPTAQ-----------APPKPPRLHLE 812
LP P K PRL E
Sbjct: 119 MLPLLSPVTFNSKQESFGPAKLPRLSCE 146
>ref|NP_689449.1| cdc42 effector protein 1 [Homo sapiens].
Length = 391
Score = 60.5 bits (145), Expect = 2e-09
Identities = 48/135 (35%), Positives = 62/135 (45%), Gaps = 15/135 (11%)
Frame = +3
Query: 378 QPGLGAEVAMSTKVPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDM 557
Q G GA K+ S +GK+ L++DMIS PLGDFRHT+H+G GG D+
Sbjct: 5 QGGRGAATMSLGKLSPVGWVSSSQGKRR-----LTADMISHPLGDFRHTMHVGRGG--DV 57
Query: 558 FGDISFL------QGKFHLLPGTAIEEGEEDGSFELPFQFTRTATLSGRELPDGP----- 704
FGD SFL G H P + + + Q R R + P
Sbjct: 58 FGDTSFLSNHGGSSGSTHRSPRSFLAK---------KLQLVRRVGAPPRRMASPPAPSPA 108
Query: 705 ----SPLLKNAISLP 737
SP++KNAISLP
Sbjct: 109 PPAISPIIKNAISLP 123
>ref|NP_036253.2| cdc42 effector protein 4 [Homo sapiens].
Length = 356
Score = 58.9 bits (141), Expect = 7e-09
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 14/124 (11%)
Frame = +3
Query: 456 KEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFLQGKFHLLPGTAIEEGEEDG 635
K + R L+++MIS PLGDFRHT+H+G G D FGD SFL K G +++E
Sbjct: 15 KRRSRADLTAEMISAPLGDFRHTMHVGRAG--DAFGDTSFLNSKAGEPDGESLDEQPSSS 72
Query: 636 SFE---LPFQF-----TRTATLSGRELPDGPSPL------LKNAISLPVIGGPQALTLPT 773
S + L +F +++ T RE D L +KNA+SLP + +A T
Sbjct: 73 SSKRSLLSRKFRGSKRSQSVTRGEREQRDMLGSLRDSALFVKNAMSLPQLNEKEAAEKGT 132
Query: 774 AQAP 785
++ P
Sbjct: 133 SKLP 136
>ref|NP_659494.2| cdc42 effector protein 5 [Homo sapiens].
Length = 148
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 417 VPIYLKRGSRKGKKEKLRDLLSSDMISPPLGDFRHTIHIGSGGGSDMFGDISFL 578
+P+ + G + KK R LS IS PLGDFRHT+H+G GG D FGD SFL
Sbjct: 1 MPVLKQLGPAQPKKRPDRGALS---ISAPLGDFRHTLHVGRGG--DAFGDTSFL 49
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,019,316
Number of extensions: 1210976
Number of successful extensions: 6551
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6495
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,901,872
Effective search space: 3397626816
Effective search space used: 3397626816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008581
(994 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 1281 0.0
Sscrofa_Chr05 62 6e-07
Sscrofa_Chr03 58 1e-05
>Sscrofa_Chr02
|| Length = 162569375
Score = 1281 bits (646), Expect = 0.0
Identities = 649/650 (99%)
Strand = Plus / Minus
Query: 99 cagctcctcggccctgaaccccgagagcatcacggcctccaagctctgtaccttcctgct 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031736 cagctcctcggccctgaaccccgagagcatcacggcctccaagctctgtaccttcctgct 6031677
Query: 159 cccagttttcagaagagttttcaacccttttgggaggcagggatttttgctgtctttacc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031676 cccagttttcagaagagttttcaacccttttgggaggcagggatttttgctgtctttacc 6031617
Query: 219 ttggacttcatcgatcgttgatcttttctgaattcctggggtcacctttggttacacccc 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031616 ttggacttcatcgatcgttgatcttttctgaattcctggggtcacctttggttacacccc 6031557
Query: 279 acacgctagtcttggccccttggcgggtgttgcggggtctggacccctccctcggggttt 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031556 acacgctagtcttggccccttggcgggtgttgcggggtctggacccctccctcggggttt 6031497
Query: 339 ctgggtgagggtggtgataacggacggttccagccttggcagccaggcctgggtgccgag 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031496 ctgggtgagggtggtgataacggacggttccagccttggcagccaggcctgggtgccgag 6031437
Query: 399 gtcgcaatgtccaccaaggtgcccatctatctgaagcgcggcagccgcaagggcaagaag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031436 gtcgcaatgtccaccaaggtgcccatctatctgaagcgcggcagccgcaagggcaagaag 6031377
Query: 459 gagaagctgcgggacctgctgtcctccgacatgatcagcccgccgctgggggacttccgc 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031376 gagaagctgcgggacctgctgtcctccgacatgatcagcccgccgctgggggacttccgc 6031317
Query: 519 cacaccatccacatcggcagcggcggcggcagcgacatgtttggtgacatctccttcctg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031316 cacaccatccacatcggcagcggcggcggcagcgacatgtttggtgacatctccttcctg 6031257
Query: 579 cagggcaagttccacctcctgccggggacggccattgaggaaggcgaggaggatggcagc 638
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6031256 cagggcaagttccacctcctgccggggacggccatcgaggaaggcgaggaggatggcagc 6031197
Query: 639 ttcgagctgcccttccagttcacgcgcacggccacgctgagcgggcgcgagctccccgat 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031196 ttcgagctgcccttccagttcacgcgcacggccacgctgagcgggcgcgagctccccgat 6031137
Query: 699 gggccgtcccctctgctcaagaacgccatctccctcccggtcatcggcgg 748
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031136 gggccgtcccctctgctcaagaacgccatctccctcccggtcatcggcgg 6031087
Score = 341 bits (172), Expect = 4e-91
Identities = 175/176 (99%)
Strand = Plus / Minus
Query: 819 cagccttccccacagccctccccgcaggaggcagggtgtgtggacatctggaggattccg 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6031016 cagccttccccacagccctccccgcaggaggcagggtgtgtggacatctggaggattccg 6030957
Query: 879 gaggctggctccgcccacagtgggctgacccccgagtcaggggccgaggagccctttctg 938
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 6030956 gaggctggctccgcccacagtgggctgacccccgagtcaggggccgaggagcccttcctg 6030897
Query: 939 tcccatgccagctccctgctctctctgcacgtggacctggggccttccatcctgga 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6030896 tcccatgccagctccctgctctctctgcacgtggacctggggccttccatcctgga 6030841
Score = 200 bits (101), Expect = 1e-48
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 cggtgcgcactgtaagttcacagccctagtcggtcccatcgccgcacggtccagctccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036372 cggtgcgcactgtaagttcacagccctagtcggtcccatcgccgcacggtccagctccgg 6036313
Query: 61 agattttgccgcccacccgtccgccgcctgcgcgcctccag 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 6036312 agattttgccgcccacccgtccgccgcctgcgcgcctccag 6036272
Score = 71.9 bits (36), Expect = 6e-10
Identities = 48/52 (92%)
Strand = Plus / Minus
Query: 417 gtgcccatctatctgaagcgcggcagccgcaagggcaagaaggagaagctgc 468
|||||| ||||||||||||| |||||| | ||||||||||||||||||||||
Sbjct: 5924336 gtgcccgtctatctgaagcgaggcagctgaaagggcaagaaggagaagctgc 5924285
>Sscrofa_Chr05
|| Length = 111506441
Score = 61.9 bits (31), Expect = 6e-07
Identities = 52/59 (88%)
Strand = Plus / Minus
Query: 486 gacatgatcagcccgccgctgggggacttccgccacaccatccacatcggcagcggcgg 544
|||||||||||||| || || |||||||||||||||||||| ||| | ||| |||||||
Sbjct: 7805874 gacatgatcagcccccccctcggggacttccgccacaccatgcacgtgggccgcggcgg 7805816
>Sscrofa_Chr03
|| Length = 144787322
Score = 58.0 bits (29), Expect = 1e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 489 atgatcagcccgccgctgggggacttccgccacaccatccacatcggca 537
||||||||||| || || || ||||||||||||||||| ||||||||||
Sbjct: 108937108 atgatcagccctccccttggagacttccgccacaccattcacatcggca 108937060
Score = 58.0 bits (29), Expect = 1e-05
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 489 atgatcagcccgccgctgggggacttccgccacaccatccacatcggca 537
||||||||||| || || || ||||||||||||||||| ||||||||||
Sbjct: 109204840 atgatcagccctccccttggagacttccgccacaccattcacatcggca 109204792
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 21,722,839
Number of extensions: 218
Number of successful extensions: 218
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 7
Length of query: 994
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 973
Effective length of database: 2,808,413,156
Effective search space: 2732586000788
Effective search space used: 2732586000788
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)