Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039576.1| alba-like protein C9orf23 homolog [Bos tauru... 208 6e-54
Alignment gi|XP_002696678.1| PREDICTED: ribonuclease P 25kDa subunit-like... 99 7e-21
Alignment gi|XP_609164.4| PREDICTED: ribonuclease P 25kDa subunit-like [B... 99 7e-21
>ref|NP_001039576.1| alba-like protein C9orf23 homolog [Bos taurus].
Length = 163
Score = 208 bits (529), Expect = 6e-54
Identities = 107/134 (79%), Positives = 108/134 (80%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVR GSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGL+QLTKLRFLQTEDSWVPTSPDTGLDPLTVR HVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNE GYQ
Sbjct: 121 LSRDPLDPNEYGYQ 134
>ref|XP_002696678.1| PREDICTED: ribonuclease P 25kDa subunit-like [Bos taurus].
Length = 210
Score = 98.6 bits (244), Expect = 7e-21
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA K V+CAEI+KRR+ GLHQ+T
Sbjct: 47 VHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVT 106
Query: 337 KLRFLQTEDSW--VPTSPDTGLDP------LTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W +P P G P L+V ++VP++ +LLS+D LDP + GYQ
Sbjct: 107 RLRYQSVRELWQSLPPEPTPGQKPGEPAASLSVLKNVPSLAILLSKDALDPRQPGYQ 163
>ref|XP_609164.4| PREDICTED: ribonuclease P 25kDa subunit-like [Bos taurus].
Length = 210
Score = 98.6 bits (244), Expect = 7e-21
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA K V+CAEI+KRR+ GLHQ+T
Sbjct: 47 VHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVT 106
Query: 337 KLRFLQTEDSW--VPTSPDTGLDP------LTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W +P P G P L+V ++VP++ +LLS+D LDP + GYQ
Sbjct: 107 RLRYQSVRELWQSLPPEPTPGQKPGEPAASLSVLKNVPSLSILLSKDALDPRQPGYQ 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 38,416,276
Number of extensions: 1168866
Number of successful extensions: 5094
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5070
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,306,398
Effective search space: 2904198794
Effective search space used: 2904198794
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538708.1| PREDICTED: similar to ribonuclease P (predicted... 218 8e-57
Alignment gi|XP_543884.1| PREDICTED: similar to ribonuclease P (predicted... 216 3e-56
Alignment gi|XP_854362.1| PREDICTED: similar to ribonuclease P 25kDa subu... 96 6e-20
>ref|XP_538708.1| PREDICTED: similar to ribonuclease P (predicted) [Canis
familiaris].
Length = 163
Score = 218 bits (554), Expect = 8e-57
Identities = 110/134 (82%), Positives = 110/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVP SPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_543884.1| PREDICTED: similar to ribonuclease P (predicted) [Canis
familiaris].
Length = 163
Score = 216 bits (549), Expect = 3e-56
Identities = 109/134 (81%), Positives = 109/134 (81%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKL FLQTEDSWVP SPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_854362.1| PREDICTED: similar to ribonuclease P 25kDa subunit [Canis
familiaris].
Length = 213
Score = 95.5 bits (236), Expect = 6e-20
Identities = 51/117 (43%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA+ K V+CAEI+KRR+ GLHQ+T
Sbjct: 50 VHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRASTKTVTCAEILKRRLAGLHQVT 109
Query: 337 KLRFLQTEDSW--VPTSPDTGLDP------LTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W +P P G P L+V ++VP + +LL +D LDP + GYQ
Sbjct: 110 RLRYRSVREVWQSLPPGPAPGHRPGEPAASLSVLKNVPGLAILLCKDALDPRQPGYQ 166
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,797,179
Number of extensions: 1194071
Number of successful extensions: 5103
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5068
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 203
Effective length of database: 15,474,232
Effective search space: 3141269096
Effective search space used: 3141269096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130709.1| PREDICTED: alba-like protein C9orf23-like is... 220 1e-57
Alignment gi|XP_003130708.1| PREDICTED: alba-like protein C9orf23-like is... 220 1e-57
Alignment gi|XP_003130707.1| PREDICTED: alba-like protein C9orf23-like is... 220 1e-57
Alignment gi|XP_003130706.1| PREDICTED: alba-like protein C9orf23-like is... 220 1e-57
Alignment gi|XP_001927152.1| PREDICTED: ribonuclease P protein subunit p2... 97 9e-21
>ref|XP_003130709.1| PREDICTED: alba-like protein C9orf23-like isoform 4 [Sus scrofa].
Length = 163
Score = 220 bits (560), Expect = 1e-57
Identities = 111/134 (82%), Positives = 111/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_003130708.1| PREDICTED: alba-like protein C9orf23-like isoform 3 [Sus scrofa].
Length = 163
Score = 220 bits (560), Expect = 1e-57
Identities = 111/134 (82%), Positives = 111/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_003130707.1| PREDICTED: alba-like protein C9orf23-like isoform 2 [Sus scrofa].
Length = 163
Score = 220 bits (560), Expect = 1e-57
Identities = 111/134 (82%), Positives = 111/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_003130706.1| PREDICTED: alba-like protein C9orf23-like isoform 1 [Sus scrofa].
Length = 163
Score = 220 bits (560), Expect = 1e-57
Identities = 111/134 (82%), Positives = 111/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|XP_001927152.1| PREDICTED: ribonuclease P protein subunit p25-like [Sus scrofa].
Length = 213
Score = 97.4 bits (241), Expect = 9e-21
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA K V+CAEI+KRR+ GLHQ+T
Sbjct: 50 VHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLVGLHQVT 109
Query: 337 KLRFLQTEDSW-----VPT---SPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W PT PD LTV ++VP++ +LLS+D LDP + GYQ
Sbjct: 110 RLRYRSVREVWQSLPPEPTPDQKPDEPAASLTVLKNVPSLAILLSKDALDPRQPGYQ 166
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,806,432
Number of extensions: 756606
Number of successful extensions: 3292
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3283
Number of HSP's successfully gapped: 5
Length of query: 305
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 206
Effective length of database: 8,879,129
Effective search space: 1829100574
Effective search space used: 1829100574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081554.2| alba-like protein C9orf23 homolog [Mus musculus]. 212 3e-55
Alignment gi|NP_598743.1| ribonuclease P protein subunit p25 [Mus musculu... 99 3e-21
>ref|NP_081554.2| alba-like protein C9orf23 homolog [Mus musculus].
Length = 163
Score = 212 bits (540), Expect = 3e-55
Identities = 107/134 (79%), Positives = 109/134 (81%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
ME YR+AGSVEL DTLEMRVRDGSKIRN S RHVVFSGS
Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDP+ECGYQ
Sbjct: 121 LSRDPLDPSECGYQ 134
>ref|NP_598743.1| ribonuclease P protein subunit p25 [Mus musculus].
Length = 199
Score = 99.4 bits (246), Expect = 3e-21
Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA K V+CAEI+KRR+ GLHQ+T
Sbjct: 36 VHMRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVT 95
Query: 337 KLRFLQTEDSW--VPTSPDTGLDP------LTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W +P P G P L+V ++VP++ +LLS+D LDP + GYQ
Sbjct: 96 RLRYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQ 152
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 33,040,654
Number of extensions: 970309
Number of successful extensions: 3903
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3881
Number of HSP's successfully gapped: 2
Length of query: 305
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 204
Effective length of database: 12,583,923
Effective search space: 2567120292
Effective search space used: 2567120292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_680545.1| alba-like protein C9orf23 [Homo sapiens]. 218 6e-57
Alignment gi|NP_680544.1| alba-like protein C9orf23 [Homo sapiens]. 218 6e-57
Alignment gi|NP_060263.2| ribonuclease P protein subunit p25 [Homo sapien... 98 9e-21
>ref|NP_680545.1| alba-like protein C9orf23 [Homo sapiens].
Length = 163
Score = 218 bits (555), Expect = 6e-57
Identities = 110/134 (82%), Positives = 110/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVP SPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|NP_680544.1| alba-like protein C9orf23 [Homo sapiens].
Length = 163
Score = 218 bits (555), Expect = 6e-57
Identities = 110/134 (82%), Positives = 110/134 (82%)
Frame = +1
Query: 82 MEHYRKAGSVELXXXXXXXXXXXDTLEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGS 261
MEHYRKAGSVEL DTLEMRVRDGSKIRN SARHVVFSGS
Sbjct: 1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60
Query: 262 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 441
GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVP SPDTGLDPLTVRRHVPAVWVL
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120
Query: 442 LSRDPLDPNECGYQ 483
LSRDPLDPNECGYQ
Sbjct: 121 LSRDPLDPNECGYQ 134
>ref|NP_060263.2| ribonuclease P protein subunit p25 [Homo sapiens].
Length = 199
Score = 98.2 bits (243), Expect = 9e-21
Identities = 52/117 (44%), Positives = 72/117 (61%), Gaps = 8/117 (6%)
Frame = +1
Query: 157 LEMRVRDGSKIRNXXXXXXXXXXXXSARHVVFSGSGRAAGKAVSCAEIVKRRVPGLHQLT 336
+ MRV++GSKIRN + R +VFSG GRA K V+CAEI+KRR+ GLHQ+T
Sbjct: 36 VHMRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVT 95
Query: 337 KLRFLQTEDSW--VPTSPDTGLDP------LTVRRHVPAVWVLLSRDPLDPNECGYQ 483
+LR+ + W +P P G P L+V ++VP + +LLS+D LDP + GYQ
Sbjct: 96 RLRYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQ 152
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 39,149,289
Number of extensions: 1168604
Number of successful extensions: 4924
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4906
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 203
Effective length of database: 14,934,836
Effective search space: 3031771708
Effective search space used: 3031771708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008584
(916 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr10 860 0.0
>Sscrofa_Chr10
|| Length = 79102373
Score = 860 bits (434), Expect = 0.0
Identities = 434/434 (100%)
Strand = Plus / Plus
Query: 47 gcgggcagcaagattgagacccagcagcaagcgagatggagcactaccggaaagctggct 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36330965 gcgggcagcaagattgagacccagcagcaagcgagatggagcactaccggaaagctggct 36331024
Query: 107 ctgtggaactaccagcaccttccccaatgccccagctgcctcctgataccctggagatgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331025 ctgtggaactaccagcaccttccccaatgccccagctgcctcctgataccctggagatgc 36331084
Query: 167 gagtccgagatggcagcaagatccgcaacctgctgggactggcgctggggcggttggagg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331085 gagtccgagatggcagcaagatccgcaacctgctgggactggcgctggggcggttggagg 36331144
Query: 227 gtggcagcgcccggcatgtggtcttctcaggttctggccgggctgccggcaaggctgtca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331145 gtggcagcgcccggcatgtggtcttctcaggttctggccgggctgccggcaaggctgtca 36331204
Query: 287 gctgtgccgagatcgtcaaacggcgggtaccaggcctgcaccagctcaccaagctgcgct 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331205 gctgtgccgagatcgtcaaacggcgggtaccaggcctgcaccagctcaccaagctgcgct 36331264
Query: 347 tcctgcaaacagaggacagctgggtgccaacctcacctgacactggcctagatcccctca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331265 tcctgcaaacagaggacagctgggtgccaacctcacctgacactggcctagatcccctca 36331324
Query: 407 cagtccgccgccatgtgcctgcggtgtgggtactgctcagccgggaccccttggacccca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331325 cagtccgccgccatgtgcctgcggtgtgggtactgctcagccgggaccccttggacccca 36331384
Query: 467 atgagtgtggctat 480
||||||||||||||
Sbjct: 36331385 atgagtgtggctat 36331398
Score = 722 bits (364), Expect = 0.0
Identities = 370/372 (99%)
Strand = Plus / Plus
Query: 545 gaagaagggcacgagacacccggttctgaggacctgccaagcaagctgttctccaggcct 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331463 gaagaagggcacgagacacccggttctgaggacctgccaagcaagctgttctccaggcct 36331522
Query: 605 gaatgtctaggatggctgtgccttctttgagaagcctctgtaactgctcaacatccccat 664
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 36331523 gaatgtctaggatggctgtgccttctttgagaagcccctgtaactgctcaacatccccat 36331582
Query: 665 ctagacttgaggttacagaagtggacctccctgtcctacttcaacttccctctggctggt 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331583 ctagacttgaggttacagaagtggacctccctgtcctacttcaacttccctctggctggt 36331642
Query: 725 ggaaagggactgtgatgaagagtgacaggtgtggggtctctgctgagttctggattgctt 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331643 ggaaagggactgtgatgaagagtgacaggtgtggggtctctgctgagttctggattgctt 36331702
Query: 785 aagaggagcttattctgccttccacctacagtgactctgatctaccttctgacagaggtc 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36331703 aagaggagcttattctgccttccacctacagtgactctgatctaccttctgacagaggtc 36331762
Query: 845 tgaggagtgggttaggaaataaaagttctgcccatttgataagcctctgctcggcctgct 904
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 36331763 tgaggagtgggttaggaaataaaagttctgcccatttgataagcctctgcttggcctgct 36331822
Query: 905 gtgtggaggtgg 916
||||||||||||
Sbjct: 36331823 gtgtggaggtgg 36331834
Score = 91.7 bits (46), Expect = 6e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 2 gccattttggactaggagcgaagtggtagagtgcgtggctgctgtg 47
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36330146 gccattttggactaggagcgaagtggtagagtgcgtggctgctgtg 36330191
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,395,422
Number of extensions: 122
Number of successful extensions: 122
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 3
Length of query: 916
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 895
Effective length of database: 2,808,413,156
Effective search space: 2513529774620
Effective search space used: 2513529774620
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)