Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698596.1| PREDICTED: HtrA serine peptidase 1 [Bos taur... 592 e-169
Alignment gi|XP_612097.3| PREDICTED: HtrA serine peptidase 1 [Bos taurus]. 592 e-169
Alignment gi|XP_002698764.1| PREDICTED: HtrA serine peptidase 4-like [Bos... 414 e-115
Alignment gi|XP_592866.3| PREDICTED: HtrA serine peptidase 4-like [Bos ta... 414 e-115
Alignment gi|NP_001071424.1| serine protease HTRA2, mitochondrial precurs... 329 5e-90
Alignment gi|XP_002688528.1| PREDICTED: HtrA serine peptidase 3-like, par... 271 9e-73
Alignment gi|XP_002683974.1| PREDICTED: predicted protein-like, partial [... 155 9e-38
>ref|XP_002698596.1| PREDICTED: HtrA serine peptidase 1 [Bos taurus].
Length = 635
Score = 592 bits (1527), Expect = e-169
Identities = 304/309 (98%), Positives = 308/309 (99%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LRHKY+FIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN
Sbjct: 320 LRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 379
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS
Sbjct: 380 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 439
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT
Sbjct: 440 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 499
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLT SKAKELKDRHRD
Sbjct: 500 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTPSKAKELKDRHRD 559
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV+SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR
Sbjct: 560 FPDVLSGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 619
Query: 911 GNEDVMVTV 937
GNED+M+TV
Sbjct: 620 GNEDIMITV 628
>ref|XP_612097.3| PREDICTED: HtrA serine peptidase 1 [Bos taurus].
Length = 635
Score = 592 bits (1527), Expect = e-169
Identities = 304/309 (98%), Positives = 308/309 (99%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LRHKY+FIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN
Sbjct: 320 LRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 379
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS
Sbjct: 380 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 439
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT
Sbjct: 440 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 499
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLT SKAKELKDRHRD
Sbjct: 500 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTPSKAKELKDRHRD 559
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV+SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR
Sbjct: 560 FPDVLSGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 619
Query: 911 GNEDVMVTV 937
GNED+M+TV
Sbjct: 620 GNEDIMITV 628
>ref|XP_002698764.1| PREDICTED: HtrA serine peptidase 4-like [Bos taurus].
Length = 482
Score = 414 bits (1064), Expect = e-115
Identities = 202/309 (65%), Positives = 261/309 (84%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR+K++FIA VVEK+AP+VVH++LFR+ P +VPV+S SGFIVSEDGLIVTNAHV+TN
Sbjct: 168 LRNKFNFIASVVEKVAPSVVHLQLFRRSPLGSEDVPVSSASGFIVSEDGLIVTNAHVLTN 227
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+ R++VEL++G YEA +KDVD K D+ALIKI+ LPVLLLG+SS+LR GEFVVA+GS
Sbjct: 228 QQRIQVELQSGVQYEATVKDVDHKLDLALIKIEPNADLPVLLLGKSSDLRAGEFVVALGS 287
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGGKELGL++SDMDYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 288 PFSLQNTVTAGIVSTTQRGGKELGLKDSDMDYIQTDAIINHGNSGGPLVNLDGDVIGINT 347
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL E H+RQ KGKA+++KKY+G+RM+ LT + +E+K + +
Sbjct: 348 LKVTAGISFAIPSDRIRQFLAEFHERQLKGKALSQKKYLGLRMLPLTMNLLQEMKRQDPE 407
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI T AE+ GLK++DVI+SING V + DV + +K +L+++VRR
Sbjct: 408 FPDVASGVFVHEVIQGTAAESSGLKDHDVIVSINGLPVTTTTDVIEAVKANDSLSLLVRR 467
Query: 911 GNEDVMVTV 937
++ +++TV
Sbjct: 468 KSQTLILTV 476
>ref|XP_592866.3| PREDICTED: HtrA serine peptidase 4-like [Bos taurus].
Length = 482
Score = 414 bits (1064), Expect = e-115
Identities = 202/309 (65%), Positives = 261/309 (84%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR+K++FIA VVEK+AP+VVH++LFR+ P +VPV+S SGFIVSEDGLIVTNAHV+TN
Sbjct: 168 LRNKFNFIASVVEKVAPSVVHLQLFRRSPLGSEDVPVSSASGFIVSEDGLIVTNAHVLTN 227
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+ R++VEL++G YEA +KDVD K D+ALIKI+ LPVLLLG+SS+LR GEFVVA+GS
Sbjct: 228 QQRIQVELQSGVQYEATVKDVDHKLDLALIKIEPNADLPVLLLGKSSDLRAGEFVVALGS 287
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGGKELGL++SDMDYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 288 PFSLQNTVTAGIVSTTQRGGKELGLKDSDMDYIQTDAIINHGNSGGPLVNLDGDVIGINT 347
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL E H+RQ KGKA+++KKY+G+RM+ LT + +E+K + +
Sbjct: 348 LKVTAGISFAIPSDRIRQFLAEFHERQLKGKALSQKKYLGLRMLPLTMNLLQEMKRQDPE 407
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI T AE+ GLK++DVI+SING V + DV + +K +L+++VRR
Sbjct: 408 FPDVASGVFVHEVIQGTAAESSGLKDHDVIVSINGLPVTTTTDVIEAVKANDSLSLLVRR 467
Query: 911 GNEDVMVTV 937
++ +++TV
Sbjct: 468 KSQTLILTV 476
>ref|NP_001071424.1| serine protease HTRA2, mitochondrial precursor [Bos taurus].
Length = 458
Score = 329 bits (843), Expect = 5e-90
Identities = 169/313 (53%), Positives = 235/313 (75%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
P S R +Y+FIADVVEK APAVV+IE+ + PFS REVP+++GSGF+V+ DGLIVTNAHV
Sbjct: 140 PTSPRSQYNFIADVVEKTAPAVVYIEILGRHPFSGREVPISNGSGFVVAADGLIVTNAHV 199
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
V ++ RV+V L +G TYEA + VD ADIA ++I + LP L LGRS+++R GEFVVA
Sbjct: 200 VADRRRVRVRLPSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVVA 259
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
+GSPF+LQNT+T+GIVS+ QR K+LGL ++++YIQTDA I++GNSGGPLVNLDGEVIG
Sbjct: 260 MGSPFALQNTITSGIVSSAQRPAKDLGLPQTNVEYIQTDAAIDFGNSGGPLVNLDGEVIG 319
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQA-KGKAITKKKYIGIRMMSLTSSKAKELKD 718
+NT+KVT+GISFAIPSD++++FL + + G + ++++YIG+ M++LT S EL+
Sbjct: 320 VNTMKVTSGISFAIPSDRLREFLHRGEKKNSWFGISGSQRRYIGVMMLTLTPSILAELQL 379
Query: 719 RHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNM 898
R FPDV G I +VI D+PA GL+ DVI++I Q V +A D+ + ++ +S L +
Sbjct: 380 REPSFPDVQHGVLIHKVILDSPAHRAGLRPGDVILAIGEQLVQNAEDIYEAVRTQSQLAV 439
Query: 899 VVRRGNEDVMVTV 937
+RRG E + + V
Sbjct: 440 RIRRGQETLTLYV 452
>ref|XP_002688528.1| PREDICTED: HtrA serine peptidase 3-like, partial [Bos taurus].
Length = 376
Score = 271 bits (694), Expect = 9e-73
Identities = 133/215 (61%), Positives = 174/215 (80%)
Frame = +2
Query: 293 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 472
Q KLP LLLG S++LRPGEFVVAIGSPF+LQNTVTTGIVST QR G+ELGLR+SDMDYIQ
Sbjct: 159 QKKLPALLLGHSADLRPGEFVVAIGSPFALQNTVTTGIVSTAQRDGRELGLRDSDMDYIQ 218
Query: 473 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAIT 652
TDAIINYGNSGGPLVNLDGEVIGINTLKV AGISFAIPSD+I +FL+E D+ K
Sbjct: 219 TDAIINYGNSGGPLVNLDGEVIGINTLKVAAGISFAIPSDRITRFLSEFQDKTGKD---W 275
Query: 653 KKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISIN 832
KK++IGIRM ++T S +ELK + DFP V SG Y+ EV+P++P++ GG+++ D+I+ +N
Sbjct: 276 KKRFIGIRMRTITPSLVEELKASNPDFPAVSSGIYVQEVVPNSPSQRGGIQDGDIIVKVN 335
Query: 833 GQSVVSANDVSDVIKKESTLNMVVRRGNEDVMVTV 937
G+ + ++++ + + ES L + VRRGN+D++ ++
Sbjct: 336 GRPLADSSELQEAVLTESPLLLEVRRGNDDLLFSI 370
>ref|XP_002683974.1| PREDICTED: predicted protein-like, partial [Bos taurus].
Length = 384
Score = 155 bits (392), Expect = 9e-38
Identities = 120/330 (36%), Positives = 171/330 (51%), Gaps = 30/330 (9%)
Frame = +2
Query: 32 IADVVEKIAPAVVHIEL---------FRKLPFSKREVP--------VASGSGFIV-SEDG 157
+A ++EK PAVV + F PF +R P + GSG I+ +++G
Sbjct: 59 LAPMLEKAMPAVVSVNTKQVVRVRNPFFNDPFFRRLFPDIPQERINESLGSGVIIDAKEG 118
Query: 158 LIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSEL 337
L++TN HV+ N V+V L +G T +A+ D DIALI+I Q L + LG S +L
Sbjct: 119 LVLTNHHVIDNADDVQVTLADGRTVKAEFLGSDRDTDIALIRIPAQN-LTDIKLGNSDQL 177
Query: 338 RPGEFVVAIGSPFSLQNTVTTGIVSTTQRGG-KELGLRNSDMDYIQTDAIINYGNSGGPL 514
R G+FVVAIG+PF TVT+GIVS R G + LG +N +IQTDA IN GNSGG L
Sbjct: 178 RVGDFVVAIGNPFGFSQTVTSGIVSAVGRSGIRGLGYQN----FIQTDASINPGNSGGAL 233
Query: 515 VNLDGEVIGINT--------LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIG 670
V+L G+++GINT + G+ AIPS+ L S Q + + +G
Sbjct: 234 VDLQGQLVGINTASFNPQGSMAGNIGLGLAIPSN-----LARSVVDQLVKHGVVVRGTLG 288
Query: 671 IRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVS 850
+ +LT+ A+ L GA I V+ + A GLK DV++S NGQ V S
Sbjct: 289 VESQNLTAQIAQGLG------LGETRGALITRVLAGSAAATAGLKPGDVVVSANGQRVDS 342
Query: 851 A---NDVSDVIKKESTLNMVVRRGNEDVMV 931
A ++V + S L + VRR + + +
Sbjct: 343 AEALHNVEGLAAVGSALTLDVRREGKPLQI 372
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 58,341,887
Number of extensions: 1583681
Number of successful extensions: 5407
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5397
Number of HSP's successfully gapped: 7
Length of query: 503
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 397
Effective length of database: 14,174,046
Effective search space: 5627096262
Effective search space used: 5627096262
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535044.2| PREDICTED: similar to Serine protease HTRA1 pre... 593 e-169
Alignment gi|XP_532799.2| PREDICTED: similar to Probable serine protease ... 419 e-117
Alignment gi|XP_532992.2| PREDICTED: similar to Serine protease HTRA2, mi... 191 2e-48
Alignment gi|XP_852554.1| PREDICTED: similar to protease, serine, 25 isof... 117 3e-26
Alignment gi|XP_865947.1| PREDICTED: similar to Serine protease HTRA2, mi... 64 4e-10
>ref|XP_535044.2| PREDICTED: similar to Serine protease HTRA1 precursor (L56) [Canis
familiaris].
Length = 364
Score = 593 bits (1530), Expect = e-169
Identities = 303/312 (97%), Positives = 311/312 (99%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
PNSLRHKY+FIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV
Sbjct: 46 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 105
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDH+G+LPVLLLGRSSELRPGEFVVA
Sbjct: 106 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHEGRLPVLLLGRSSELRPGEFVVA 165
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG
Sbjct: 166 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 225
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 721
INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKD
Sbjct: 226 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDH 285
Query: 722 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV 901
HRDFPDV+SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA+DVSDVIKKE+TLNMV
Sbjct: 286 HRDFPDVLSGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSASDVSDVIKKENTLNMV 345
Query: 902 VRRGNEDVMVTV 937
VRRGNED+M+TV
Sbjct: 346 VRRGNEDIMITV 357
>ref|XP_532799.2| PREDICTED: similar to Probable serine protease HTRA4 precursor [Canis
familiaris].
Length = 392
Score = 419 bits (1076), Expect = e-117
Identities = 202/309 (65%), Positives = 264/309 (85%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR +Y+F+A VVEK+AP+VVH++LFR+ P S +++P +SGSGFIVSEDGLIVTNAHV+TN
Sbjct: 78 LRSQYNFLAAVVEKVAPSVVHLQLFRRSPLSSKDMPASSGSGFIVSEDGLIVTNAHVITN 137
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+ R++VEL++G YEA IKD+D K D+ALIKI+ G LPVLLLGRSS+L+ GEFVVA+GS
Sbjct: 138 QQRIQVELQSGVQYEATIKDIDHKLDLALIKIEPNGDLPVLLLGRSSDLQAGEFVVALGS 197
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGG+ELGL++SDMDYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 198 PFSLQNTVTAGIVSTTQRGGRELGLKDSDMDYIQTDAIINHGNSGGPLVNLDGDVIGINT 257
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL E H+RQ KGKA+++KKY+G+RM+ LT + +E+K + D
Sbjct: 258 LKVTAGISFAIPSDRIRQFLAEFHERQLKGKALSQKKYLGLRMLPLTMNLLQEMKRQDPD 317
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI T AE+ GL+++DVI+SINGQ V + DV + +K +L+++V R
Sbjct: 318 FPDVSSGVFVYEVIQGTAAESSGLRDHDVIVSINGQPVTTTTDVIEAVKDSDSLSIMVLR 377
Query: 911 GNEDVMVTV 937
G++ +++TV
Sbjct: 378 GSQTLILTV 386
>ref|XP_532992.2| PREDICTED: similar to Serine protease HTRA2, mitochondrial
precursor (High temperature requirement protein A2)
(HtrA2) (Omi stress-regulated endoprotease) (Serine
proteinase OMI) isoform 1 [Canis familiaris].
Length = 199
Score = 191 bits (484), Expect = 2e-48
Identities = 97/193 (50%), Positives = 142/193 (73%), Gaps = 1/193 (0%)
Frame = +2
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
+GSPF+LQNT+T+GIVS+ QR ++LGL ++++YIQTDA I++GNSGGPLVNLDGEVIG
Sbjct: 1 MGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNSGGPLVNLDGEVIG 60
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQA-KGKAITKKKYIGIRMMSLTSSKAKELKD 718
+NT+KVTAGISFAIPSD++++FL + + G + ++++YIG+ M++LT S EL+
Sbjct: 61 VNTMKVTAGISFAIPSDRLREFLHRGEKKNSWFGISGSQRRYIGVMMLTLTPSILAELQL 120
Query: 719 RHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNM 898
R FPDV G I +VI D+PA GL+ DVI++I Q V +A D+ + ++ +S L +
Sbjct: 121 REPSFPDVQHGVLIHKVILDSPAHRAGLRPGDVILAIGEQLVQNAEDIYEAVRTQSQLAV 180
Query: 899 VVRRGNEDVMVTV 937
+RRG E + + V
Sbjct: 181 RIRRGPETLTLYV 193
>ref|XP_852554.1| PREDICTED: similar to protease, serine, 25 isoform 2 isoform 2
[Canis familiaris].
Length = 361
Score = 117 bits (293), Expect = 3e-26
Identities = 58/95 (61%), Positives = 76/95 (80%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
P+S R +Y+FIADVVEK APAVV+IE+ + PFS REVP+++GSGF+V+ DGLIVTNAHV
Sbjct: 140 PSSPRSQYNFIADVVEKTAPAVVYIEILGRHPFSGREVPISNGSGFVVAADGLIVTNAHV 199
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKI 286
V ++ RV+V L +G TYEA + VD ADIA ++I
Sbjct: 200 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRI 234
Score = 100 bits (248), Expect = 5e-21
Identities = 80/245 (32%), Positives = 121/245 (49%), Gaps = 13/245 (5%)
Frame = +2
Query: 242 IKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGE-FVVAIGSPFSLQNTVTTGIVSTT 418
I DV EK A++ I+ G+ P GR + G FVVA VT V
Sbjct: 150 IADVVEKTAPAVVYIEILGRHP--FSGREVPISNGSGFVVAADGLI-----VTNAHVVAD 202
Query: 419 QRGGKELGLRNSDMDYIQT--DAIIN---------YGNSGGPLVNLDGEVIGINTLKVTA 565
+R + L + + T D + + +GNSGGPLVNLDGEVIG+NT+KVTA
Sbjct: 203 RRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKFGNSGGPLVNLDGEVIGVNTMKVTA 262
Query: 566 GISFAIPSDKIKKFLTESHDRQA-KGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDV 742
GISFAIPSD++++FL + + G + ++++YIG+ M++LT
Sbjct: 263 GISFAIPSDRLREFLHRGEKKNSWFGISGSQRRYIGVMMLTLT----------------- 305
Query: 743 ISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRRGNED 922
GL+ DVI++I Q V +A D+ + ++ +S L + +RRG E
Sbjct: 306 ---------------PRAGLRPGDVILAIGEQLVQNAEDIYEAVRTQSQLAVRIRRGPET 350
Query: 923 VMVTV 937
+ + V
Sbjct: 351 LTLYV 355
>ref|XP_865947.1| PREDICTED: similar to Serine protease HTRA2, mitochondrial
precursor (High temperature requirement protein A2)
(HtrA2) (Omi stress-regulated endoprotease) (Serine
proteinase OMI) isoform 3 [Canis familiaris].
Length = 94
Score = 63.9 bits (154), Expect = 4e-10
Identities = 35/87 (40%), Positives = 53/87 (60%)
Frame = +2
Query: 677 MMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 856
M++LT S EL+ R FPDV G I +VI D+PA GL+ DVI++I Q V +A
Sbjct: 2 MLTLTPSILAELQLREPSFPDVQHGVLIHKVILDSPAHRAGLRPGDVILAIGEQLVQNAE 61
Query: 857 DVSDVIKKESTLNMVVRRGNEDVMVTV 937
D+ + ++ +S L + +RRG E + + V
Sbjct: 62 DIYEAVRTQSQLAVRIRRGPETLTLYV 88
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 61,044,325
Number of extensions: 1634403
Number of successful extensions: 5796
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5789
Number of HSP's successfully gapped: 6
Length of query: 503
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 396
Effective length of database: 15,307,552
Effective search space: 6061790592
Effective search space used: 6061790592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003133256.1| PREDICTED: serine protease HTRA1-like [Sus s... 602 e-172
Alignment gi|XP_003359526.1| PREDICTED: probable serine protease HTRA4 is... 419 e-117
Alignment gi|XP_001925578.3| PREDICTED: probable serine protease HTRA4 is... 414 e-116
Alignment gi|NP_001182272.1| probable serine protease HTRA3 [Sus scrofa]. 389 e-108
Alignment gi|XP_003361955.1| PREDICTED: serine protease HTRA2, mitochondr... 293 2e-79
Alignment gi|XP_003354814.1| PREDICTED: serine protease HTRA2, mitochondr... 220 1e-57
>ref|XP_003133256.1| PREDICTED: serine protease HTRA1-like [Sus scrofa].
Length = 481
Score = 602 bits (1553), Expect = e-172
Identities = 311/312 (99%), Positives = 312/312 (100%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
PNSLRHKY+FIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV
Sbjct: 163 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 222
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA
Sbjct: 223 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 282
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG
Sbjct: 283 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 342
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 721
INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR
Sbjct: 343 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 402
Query: 722 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV 901
HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV
Sbjct: 403 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV 462
Query: 902 VRRGNEDVMVTV 937
VRRGNEDVMVTV
Sbjct: 463 VRRGNEDVMVTV 474
>ref|XP_003359526.1| PREDICTED: probable serine protease HTRA4 isoform 2 [Sus scrofa].
Length = 482
Score = 419 bits (1076), Expect = e-117
Identities = 203/309 (65%), Positives = 263/309 (85%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR KY+FIA+VVEK+AP+VVH++LF + P S ++VP +S SGFIVSEDGLIVTNAHV+TN
Sbjct: 168 LRSKYNFIAEVVEKVAPSVVHLQLFSRSPLSNKDVPASSASGFIVSEDGLIVTNAHVLTN 227
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+HR++VEL+NG YEA +KD+D K D+ALIKI+ + LPVLLLG+SS+LR GEFVVA+GS
Sbjct: 228 RHRIQVELQNGVQYEATVKDIDHKLDLALIKIEPKTDLPVLLLGKSSDLRAGEFVVALGS 287
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGGKELGL++SDMDYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 288 PFSLQNTVTAGIVSTTQRGGKELGLKDSDMDYIQTDAIINHGNSGGPLVNLDGDVIGINT 347
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL E H+RQ KGKA+++KKY+G+RM+ LT + +++K + D
Sbjct: 348 LKVTAGISFAIPSDRIRQFLAEFHERQLKGKALSQKKYLGLRMLPLTMNLLQDMKRQDPD 407
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI T AE+ GL+++DVI+SINGQ V + DV + +K L+++VRR
Sbjct: 408 FPDVSSGVFVYEVIQGTAAESSGLRDHDVIVSINGQPVSTTTDVIEAVKANDFLSILVRR 467
Query: 911 GNEDVMVTV 937
++ +++TV
Sbjct: 468 KSQTLILTV 476
>ref|XP_001925578.3| PREDICTED: probable serine protease HTRA4 isoform 1 [Sus scrofa].
Length = 482
Score = 414 bits (1063), Expect = e-116
Identities = 201/309 (65%), Positives = 262/309 (84%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR KY+FIA+VVEK+AP+VVH++L+ +L ++VP +S SGFIVSEDGLIVTNAHV+TN
Sbjct: 168 LRSKYNFIAEVVEKVAPSVVHLQLWGRLTHGNKDVPASSASGFIVSEDGLIVTNAHVLTN 227
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+HR++VEL+NG YEA +KD+D K D+ALIKI+ + LPVLLLG+SS+LR GEFVVA+GS
Sbjct: 228 RHRIQVELQNGVQYEATVKDIDHKLDLALIKIEPKTDLPVLLLGKSSDLRAGEFVVALGS 287
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGGKELGL++SDMDYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 288 PFSLQNTVTAGIVSTTQRGGKELGLKDSDMDYIQTDAIINHGNSGGPLVNLDGDVIGINT 347
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL E H+RQ KGKA+++KKY+G+RM+ LT + +++K + D
Sbjct: 348 LKVTAGISFAIPSDRIRQFLAEFHERQLKGKALSQKKYLGLRMLPLTMNLLQDMKRQDPD 407
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI T AE+ GL+++DVI+SINGQ V + DV + +K L+++VRR
Sbjct: 408 FPDVSSGVFVYEVIQGTAAESSGLRDHDVIVSINGQPVSTTTDVIEAVKANDFLSILVRR 467
Query: 911 GNEDVMVTV 937
++ +++TV
Sbjct: 468 KSQTLILTV 476
>ref|NP_001182272.1| probable serine protease HTRA3 [Sus scrofa].
Length = 453
Score = 389 bits (998), Expect = e-108
Identities = 196/316 (62%), Positives = 254/316 (80%), Gaps = 6/316 (1%)
Frame = +2
Query: 8 SLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVV- 184
S R+K++FIADVVEKIAPAVVHIELF + P R VP++SGSGF++SE GLIVTNAHVV
Sbjct: 135 SPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFVMSESGLIVTNAHVVS 194
Query: 185 -----TNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGE 349
T + ++KV+L+NG TYEA IKD+D+K+DIA I+I + KLP LLLG S++LRPGE
Sbjct: 195 STNAVTGRQQLKVQLQNGDTYEATIKDIDKKSDIATIRIRPKKKLPALLLGHSADLRPGE 254
Query: 350 FVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDG 529
FVVAIGSPF+LQNTVTTGIVST QR G+ELGLR+SDMDYIQTDAIINYGNSGGPLVNLDG
Sbjct: 255 FVVAIGSPFALQNTVTTGIVSTAQRDGRELGLRDSDMDYIQTDAIINYGNSGGPLVNLDG 314
Query: 530 EVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKE 709
EVIGINTLKV AGISFAIPSD+I +FLTE D+Q K KK++IGIRM ++T S +E
Sbjct: 315 EVIGINTLKVAAGISFAIPSDRIARFLTEFQDKQGKD---WKKRFIGIRMRTITPSLVEE 371
Query: 710 LKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKEST 889
LK + DFP V SG Y+ EV+P++P++ GG+++ D+++ +NG+ + ++++ + ES
Sbjct: 372 LKASNPDFPAVSSGIYVQEVVPNSPSQRGGIQDGDIVVKVNGRPLADSSELQEAALTESP 431
Query: 890 LNMVVRRGNEDVMVTV 937
L + VRRGN+D++ ++
Sbjct: 432 LLLEVRRGNDDLLFSI 447
>ref|XP_003361955.1| PREDICTED: serine protease HTRA2, mitochondrial-like [Sus scrofa].
Length = 394
Score = 293 bits (750), Expect = 2e-79
Identities = 151/282 (53%), Positives = 210/282 (74%), Gaps = 1/282 (0%)
Frame = +2
Query: 95 PFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIA 274
PFS REVP+++GSGF+V+ DGLIVTNAHVV ++ RV+V L +G TYEA + VD AD +
Sbjct: 107 PFSGREVPISNGSGFVVASDGLIVTNAHVVADRRRVRVRLPSGDTYEAVVTAVDPVADRS 166
Query: 275 LIKIDHQGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNS 454
L+ I Q LP L LGRS+++R GEFVVA+GSPF+LQNT+T+GIVS+ QR K+LGL +
Sbjct: 167 LVPILLQEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPAKDLGLPQT 226
Query: 455 DMDYIQTDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQA 634
+++YIQTDA I++GNSGGPLVNLDGEVIG+NT+KVTAGISFAIPSD++++FL + +
Sbjct: 227 NVEYIQTDAAIDFGNSGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLRRGEKKNS 286
Query: 635 -KGKAITKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKEN 811
G + ++++YIG+ M++LT S EL+ R FPDV G I +VI D+PA GL+
Sbjct: 287 WFGNSGSQRRYIGVMMLTLTPSILAELQLREPSFPDVQHGVLIHKVILDSPAHRAGLRPG 346
Query: 812 DVIISINGQSVVSANDVSDVIKKESTLNMVVRRGNEDVMVTV 937
DVI++I Q V +A D+ + ++ +S L + +RRG E + + V
Sbjct: 347 DVILAIGEQLVQNAEDIYEAVRTQSQLAVRIRRGPETLTLYV 388
>ref|XP_003354814.1| PREDICTED: serine protease HTRA2, mitochondrial-like [Sus scrofa].
Length = 421
Score = 220 bits (561), Expect = 1e-57
Identities = 113/216 (52%), Positives = 160/216 (74%), Gaps = 1/216 (0%)
Frame = +2
Query: 293 QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQ 472
Q LP L LGRS+++R GEFVVA+GSPF+LQNT+T+GIVS+ QR K+LGL ++++YIQ
Sbjct: 200 QEPLPTLPLGRSADVRQGEFVVAMGSPFALQNTITSGIVSSAQRPAKDLGLPQTNVEYIQ 259
Query: 473 TDAIINYGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQA-KGKAI 649
TDA I++GNSGGPLVNLDGEVIG+NT+KVTAGISFAIPSD++++FL + + G +
Sbjct: 260 TDAAIDFGNSGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLRRGEKKNSWFGNSG 319
Query: 650 TKKKYIGIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISI 829
++++YIG+ M++LT S EL+ R FPDV G I +VI D+PA GL+ DVI++I
Sbjct: 320 SQRRYIGVMMLTLTPSILAELQLREPSFPDVQHGVLIHKVILDSPAHRAGLRPGDVILAI 379
Query: 830 NGQSVVSANDVSDVIKKESTLNMVVRRGNEDVMVTV 937
Q V +A D+ + ++ +S L + +RRG E + + V
Sbjct: 380 GEQLVQNAEDIYEAVRTQSQLAVRIRRGPETLTLYV 415
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 37,618,557
Number of extensions: 1016333
Number of successful extensions: 3613
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3604
Number of HSP's successfully gapped: 6
Length of query: 503
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 400
Effective length of database: 8,779,541
Effective search space: 3511816400
Effective search space used: 3511816400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062510.2| serine protease HTRA1 precursor [Mus musculus]. 593 e-169
Alignment gi|NP_001074656.1| HtrA serine peptidase 4 [Mus musculus]. 409 e-114
Alignment gi|NP_084403.2| probable serine protease HTRA3 isoform a precur... 383 e-106
Alignment gi|NP_062726.3| serine protease HTRA2, mitochondrial [Mus muscu... 325 7e-89
Alignment gi|NP_001036080.1| probable serine protease HTRA3 isoform b pre... 300 2e-81
>ref|NP_062510.2| serine protease HTRA1 precursor [Mus musculus].
Length = 480
Score = 593 bits (1528), Expect = e-169
Identities = 302/312 (96%), Positives = 312/312 (100%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
PNSLRHKY+FIADVVEKIAPAVVHIEL+RKLPFSKREVPVASGSGFIVSEDGLIVTNAHV
Sbjct: 162 PNSLRHKYNFIADVVEKIAPAVVHIELYRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 221
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
VTNK+RVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA
Sbjct: 222 VTNKNRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 281
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG
Sbjct: 282 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 341
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 721
INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKA+TKKKYIGIRMMSLTSSKAKELKDR
Sbjct: 342 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAVTKKKYIGIRMMSLTSSKAKELKDR 401
Query: 722 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV 901
HRDFPDV+SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV+ANDVSDVIKKE+TLNMV
Sbjct: 402 HRDFPDVLSGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVTANDVSDVIKKENTLNMV 461
Query: 902 VRRGNEDVMVTV 937
VRRGNED+++TV
Sbjct: 462 VRRGNEDIVITV 473
>ref|NP_001074656.1| HtrA serine peptidase 4 [Mus musculus].
Length = 483
Score = 409 bits (1051), Expect = e-114
Identities = 199/309 (64%), Positives = 260/309 (84%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR KY+FIA VVEK+AP+VVH++LFR+ P + +E+P +SGSGFIVSEDGLIVTNAHV+TN
Sbjct: 169 LRRKYNFIAAVVEKVAPSVVHLQLFRRSPLTNQEIPSSSGSGFIVSEDGLIVTNAHVLTN 228
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+ +++VEL++GA YEA +KD+D K D+ALIKI+ +LPVLLLGRSS+LR GEFVVA+GS
Sbjct: 229 QQKIQVELQSGARYEATVKDIDHKLDLALIKIEPDTELPVLLLGRSSDLRAGEFVVALGS 288
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNTVT GIVSTTQRGG+ELGL+NSD+DYIQTDAIIN+GNSGGPLVNLDG+VIGINT
Sbjct: 289 PFSLQNTVTAGIVSTTQRGGRELGLKNSDIDYIQTDAIINHGNSGGPLVNLDGDVIGINT 348
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
LKVTAGISFAIPSD+I++FL + H+RQ KGKA +KKY+G+RM+ LT + +E+K + +
Sbjct: 349 LKVTAGISFAIPSDRIRQFLEDYHERQLKGKAPLQKKYLGLRMLPLTLNLLQEMKRQDPE 408
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG ++ EVI + A + GL+++DVI+SINGQ V + DV + +K L+++V R
Sbjct: 409 FPDVSSGVFVYEVIQGSAAASSGLRDHDVIVSINGQPVTTTTDVIEAVKDNDFLSIIVLR 468
Query: 911 GNEDVMVTV 937
G++ + +TV
Sbjct: 469 GSQTLFLTV 477
>ref|NP_084403.2| probable serine protease HTRA3 isoform a precursor [Mus musculus].
Length = 459
Score = 383 bits (983), Expect = e-106
Identities = 194/316 (61%), Positives = 255/316 (80%), Gaps = 6/316 (1%)
Frame = +2
Query: 8 SLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVT 187
S R+K++FIADVVEKIAPAVVHIELF + P R VP++SGSGFI+SE GLIVTNAHVV+
Sbjct: 141 SPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFIMSEAGLIVTNAHVVS 200
Query: 188 N------KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGE 349
+ + ++KV+L+NG YEA I+D+D+K+DIA I I + KLPVLLLG S++LRPGE
Sbjct: 201 SSSTASGRQQLKVQLQNGDAYEATIQDIDKKSDIATIVIHPKKKLPVLLLGHSADLRPGE 260
Query: 350 FVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDG 529
FVVAIGSPF+LQNTVTTGIVST QR GKELGLR+SDMDYIQTDAIINYGNSGGPLVNLDG
Sbjct: 261 FVVAIGSPFALQNTVTTGIVSTAQRDGKELGLRDSDMDYIQTDAIINYGNSGGPLVNLDG 320
Query: 530 EVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKE 709
EVIGINTLKV AGISFAIPSD+I +FL+E ++ K KK++IGIRM ++T S +E
Sbjct: 321 EVIGINTLKVAAGISFAIPSDRITRFLSEFQNKHVKD---WKKRFIGIRMRTITPSLVEE 377
Query: 710 LKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKEST 889
LK + DFP V SG Y+ EV+P++P++ GG+++ D+I+ +NG+ + ++++ + + ES+
Sbjct: 378 LKAANPDFPAVSSGIYVQEVVPNSPSQRGGIQDGDIIVKVNGRPLADSSELQEAVLNESS 437
Query: 890 LNMVVRRGNEDVMVTV 937
L + VRRGN+D++ ++
Sbjct: 438 LLLEVRRGNDDLLFSI 453
>ref|NP_062726.3| serine protease HTRA2, mitochondrial [Mus musculus].
Length = 458
Score = 325 bits (832), Expect = 7e-89
Identities = 167/313 (53%), Positives = 234/313 (74%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
P S R +Y+FIADVVEK APAVV+IE+ + PFS REVP+++GSGF+V+ DGLIVTNAHV
Sbjct: 140 PTSPRSQYNFIADVVEKTAPAVVYIEILDRHPFSGREVPISNGSGFVVASDGLIVTNAHV 199
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
V ++ RV+V L +G TYEA + VD ADIA ++I + LP L LGRS+++R GEFVVA
Sbjct: 200 VADRRRVRVRLPSGDTYEAMVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVVA 259
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
+GSPF+LQNT+T+GIVS+ QR ++LGL ++++YIQTDA I++GNSGGPLVNLDGEVIG
Sbjct: 260 MGSPFALQNTITSGIVSSAQRPARDLGLPQNNVEYIQTDAAIDFGNSGGPLVNLDGEVIG 319
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQA-KGKAITKKKYIGIRMMSLTSSKAKELKD 718
+NT+KVTAGISFAIPSD++++FL + + G + ++++YIG+ M++LT S EL+
Sbjct: 320 VNTMKVTAGISFAIPSDRLREFLHRGEKKNSWFGTSGSQRRYIGVMMLTLTPSILIELQL 379
Query: 719 RHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNM 898
R FPDV G I +VI +PA GL+ DVI++I + +A DV + ++ +S L +
Sbjct: 380 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEKLAQNAEDVYEAVRTQSQLAV 439
Query: 899 VVRRGNEDVMVTV 937
+RRG+E + + V
Sbjct: 440 RIRRGSETLTLYV 452
>ref|NP_001036080.1| probable serine protease HTRA3 isoform b precursor [Mus musculus].
Length = 363
Score = 300 bits (769), Expect = 2e-81
Identities = 156/216 (72%), Positives = 184/216 (85%), Gaps = 6/216 (2%)
Frame = +2
Query: 8 SLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVT 187
S R+K++FIADVVEKIAPAVVHIELF + P R VP++SGSGFI+SE GLIVTNAHVV+
Sbjct: 141 SPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFIMSEAGLIVTNAHVVS 200
Query: 188 N------KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGE 349
+ + ++KV+L+NG YEA I+D+D+K+DIA I I + KLPVLLLG S++LRPGE
Sbjct: 201 SSSTASGRQQLKVQLQNGDAYEATIQDIDKKSDIATIVIHPKKKLPVLLLGHSADLRPGE 260
Query: 350 FVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDG 529
FVVAIGSPF+LQNTVTTGIVST QR GKELGLR+SDMDYIQTDAIINYGNSGGPLVNLDG
Sbjct: 261 FVVAIGSPFALQNTVTTGIVSTAQRDGKELGLRDSDMDYIQTDAIINYGNSGGPLVNLDG 320
Query: 530 EVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAK 637
EVIGINTLKV AGISFAIPSD+I +FL+E ++ K
Sbjct: 321 EVIGINTLKVAAGISFAIPSDRITRFLSEFQNKHVK 356
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 50,662,329
Number of extensions: 1350698
Number of successful extensions: 4620
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4608
Number of HSP's successfully gapped: 5
Length of query: 503
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 397
Effective length of database: 12,433,743
Effective search space: 4936195971
Effective search space used: 4936195971
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002766.1| serine protease HTRA1 precursor [Homo sapiens]. 600 e-172
Alignment gi|NP_444272.1| probable serine protease HTRA3 precursor [Homo ... 392 e-109
Alignment gi|NP_710159.1| probable serine protease HTRA4 precursor [Homo ... 382 e-106
Alignment gi|NP_037379.1| serine protease HTRA2, mitochondrial isoform 1 ... 323 2e-88
Alignment gi|NP_659540.1| serine protease HTRA2, mitochondrial isoform 2 ... 114 3e-25
>ref|NP_002766.1| serine protease HTRA1 precursor [Homo sapiens].
Length = 480
Score = 600 bits (1548), Expect = e-172
Identities = 308/312 (98%), Positives = 312/312 (100%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
PNSLRHKY+FIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV
Sbjct: 162 PNSLRHKYNFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 221
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA
Sbjct: 222 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 281
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG
Sbjct: 282 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 341
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 721
INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR
Sbjct: 342 INTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDR 401
Query: 722 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMV 901
HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIK+ESTLNMV
Sbjct: 402 HRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKRESTLNMV 461
Query: 902 VRRGNEDVMVTV 937
VRRGNED+M+TV
Sbjct: 462 VRRGNEDIMITV 473
>ref|NP_444272.1| probable serine protease HTRA3 precursor [Homo sapiens].
Length = 453
Score = 392 bits (1008), Expect = e-109
Identities = 199/317 (62%), Positives = 259/317 (81%), Gaps = 6/317 (1%)
Frame = +2
Query: 5 NSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVV 184
+S R+K++FIADVVEKIAPAVVHIELF + P R VP++SGSGFI+SE GLI+TNAHVV
Sbjct: 134 SSPRYKFNFIADVVEKIAPAVVHIELFLRHPLFGRNVPLSSGSGFIMSEAGLIITNAHVV 193
Query: 185 TN------KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPG 346
++ + ++KV+L+NG +YEA IKD+D+K+DIA IKI + KLPVLLLG S++LRPG
Sbjct: 194 SSNSAAPGRQQLKVQLQNGDSYEATIKDIDKKSDIATIKIHPKKKLPVLLLGHSADLRPG 253
Query: 347 EFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLD 526
EFVVAIGSPF+LQNTVTTGIVST QR G+ELGLR+SDMDYIQTDAIINYGNSGGPLVNLD
Sbjct: 254 EFVVAIGSPFALQNTVTTGIVSTAQREGRELGLRDSDMDYIQTDAIINYGNSGGPLVNLD 313
Query: 527 GEVIGINTLKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAK 706
GEVIGINTLKVTAGISFAIPSD+I +FLTE D+Q K KK++IGIRM ++T S
Sbjct: 314 GEVIGINTLKVTAGISFAIPSDRITRFLTEFQDKQIKD---WKKRFIGIRMRTITPSLVD 370
Query: 707 ELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKES 886
ELK + DFP+V SG Y+ EV P++P++ GG+++ D+I+ +NG+ +V ++++ + + ES
Sbjct: 371 ELKASNPDFPEVSSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTES 430
Query: 887 TLNMVVRRGNEDVMVTV 937
L + VRRGN+D++ ++
Sbjct: 431 PLLLEVRRGNDDLLFSI 447
>ref|NP_710159.1| probable serine protease HTRA4 precursor [Homo sapiens].
Length = 476
Score = 382 bits (980), Expect = e-106
Identities = 186/309 (60%), Positives = 249/309 (80%)
Frame = +2
Query: 11 LRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTN 190
LR Y+FIA VVEK+AP+VVH++L+ +L R VPV SGSGFIVSEDGLI+TNAHVV N
Sbjct: 163 LRRNYNFIAAVVEKVAPSVVHVQLWGRLLHGSRLVPVYSGSGFIVSEDGLIITNAHVVRN 222
Query: 191 KHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVAIGS 370
+ ++V L+NGA YEA +KD+D K D+A+IKI+ +LPVL+LGRSS+LR GEFVVA+GS
Sbjct: 223 QQWIEVVLQNGARYEAVVKDIDLKLDLAVIKIESNAELPVLMLGRSSDLRAGEFVVALGS 282
Query: 371 PFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 550
PFSLQNT T GIVST QRGGKELG+++SDMDY+Q DA INYGNSGGPLVNLDG+VIG+N+
Sbjct: 283 PFSLQNTATAGIVSTKQRGGKELGMKDSDMDYVQIDATINYGNSGGPLVNLDGDVIGVNS 342
Query: 551 LKVTAGISFAIPSDKIKKFLTESHDRQAKGKAITKKKYIGIRMMSLTSSKAKELKDRHRD 730
L+VT GISFAIPSD++++FL E H+ Q KGKA + KKY+G++M+SLT ++ELK + D
Sbjct: 343 LRVTDGISFAIPSDRVRQFLAEYHEHQMKGKAFSNKKYLGLQMLSLTVPLSEELKMHYPD 402
Query: 731 FPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNMVVRR 910
FPDV SG Y+ +V+ T A++ GL+++DVI++ING+ + + DV + +S L+M V R
Sbjct: 403 FPDVSSGVYVCKVVEGTAAQSSGLRDHDVIVNINGKPITTTTDVVKALDSDS-LSMAVLR 461
Query: 911 GNEDVMVTV 937
G +++++TV
Sbjct: 462 GKDNLLLTV 470
>ref|NP_037379.1| serine protease HTRA2, mitochondrial isoform 1 preproprotein [Homo
sapiens].
Length = 458
Score = 323 bits (829), Expect = 2e-88
Identities = 167/313 (53%), Positives = 233/313 (74%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
P S R +Y+FIADVVEK APAVV+IE+ + PF REVP+++GSGF+V+ DGLIVTNAHV
Sbjct: 140 PASPRSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHV 199
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVVA 361
V ++ RV+V L +G TYEA + VD ADIA ++I + LP L LGRS+++R GEFVVA
Sbjct: 200 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVVA 259
Query: 362 IGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIG 541
+GSPF+LQNT+T+GIVS+ QR ++LGL ++++YIQTDA I++GNSGGPLVNLDGEVIG
Sbjct: 260 MGSPFALQNTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAIDFGNSGGPLVNLDGEVIG 319
Query: 542 INTLKVTAGISFAIPSDKIKKFLTESHDR-QAKGKAITKKKYIGIRMMSLTSSKAKELKD 718
+NT+KVTAGISFAIPSD++++FL + + G + ++++YIG+ M++L+ S EL+
Sbjct: 320 VNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQL 379
Query: 719 RHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSANDVSDVIKKESTLNM 898
R FPDV G I +VI +PA GL+ DVI++I Q V +A DV + ++ +S L +
Sbjct: 380 REPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAEDVYEAVRTQSQLAV 439
Query: 899 VVRRGNEDVMVTV 937
+RRG E + + V
Sbjct: 440 QIRRGRETLTLYV 452
>ref|NP_659540.1| serine protease HTRA2, mitochondrial isoform 2 [Homo sapiens].
Length = 361
Score = 114 bits (284), Expect = 3e-25
Identities = 57/95 (60%), Positives = 74/95 (77%)
Frame = +2
Query: 2 PNSLRHKYHFIADVVEKIAPAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHV 181
P S R +Y+FIADVVEK APAVV+IE+ + PF REVP+++GSGF+V+ DGLIVTNAHV
Sbjct: 140 PASPRSQYNFIADVVEKTAPAVVYIEILDRHPFLGREVPISNGSGFVVAADGLIVTNAHV 199
Query: 182 VTNKHRVKVELKNGATYEAKIKDVDEKADIALIKI 286
V ++ RV+V L +G TYEA + VD ADIA ++I
Sbjct: 200 VADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRI 234
Score = 101 bits (251), Expect = 2e-21
Identities = 57/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 491 YGNSGGPLVNLDGEVIGINTLKVTAGISFAIPSDKIKKFLTESHDR-QAKGKAITKKKYI 667
+GNSGGPLVNLDGEVIG+NT+KVTAGISFAIPSD++++FL + + G + ++++YI
Sbjct: 238 FGNSGGPLVNLDGEVIGVNTMKVTAGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYI 297
Query: 668 GIRMMSLTSSKAKELKDRHRDFPDVISGAYIIEVIPDTPAEAGGLKENDVIISINGQSVV 847
G+ M++L + GL+ DVI++I Q V
Sbjct: 298 GVMMLTL--------------------------------SPRAGLRPGDVILAIGEQMVQ 325
Query: 848 SANDVSDVIKKESTLNMVVRRGNEDVMVTV 937
+A DV + ++ +S L + +RRG E + + V
Sbjct: 326 NAEDVYEAVRTQSQLAVQIRRGRETLTLYV 355
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 59,816,432
Number of extensions: 1607551
Number of successful extensions: 5421
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5416
Number of HSP's successfully gapped: 6
Length of query: 503
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 396
Effective length of database: 14,770,016
Effective search space: 5848926336
Effective search space used: 5848926336
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008585
(1509 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 1396 0.0
Sscrofa_Chr08 121 1e-24
Sscrofa_Chr15 74 2e-10
>Sscrofa_Chr14
|| Length = 153851969
Score = 1396 bits (704), Expect = 0.0
Identities = 713/716 (99%)
Strand = Plus / Plus
Query: 793 cggtgggctcaaggaaaatgatgtcatcatcagcatcaacggccagtcggtggtctccgc 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143557793 cggtgggctcaaggaaaatgatgtcatcatcagcatcaacggccagtcggtggtctccgc 143557852
Query: 853 caacgacgtcagcgacgtcattaagaaggaaagcaccctgaacatggtggtccgcagggg 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143557853 caacgacgtcagcgacgtcattaagaaggaaagcaccctgaacatggtggtccgcagggg 143557912
Query: 913 caacgaagacgtcatggtcaccgtgattcccgaagaaatcgacccgtaggcagaggcatg 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143557913 caacgaagacgtcatggtcaccgtgattcccgaagaaatcgacccgtaggcagaggcatg 143557972
Query: 973 agctggacttcatgtttctctcagagactctccaggggacgatgcgtgatgcctctgggc 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143557973 agctggacttcatgtttctctcagagactctccaggggacgatgcgtgatgcctctgggc 143558032
Query: 1033 tggtggctccggaagcgcaagactttggaccgccttgttgcttgttcagcacaaaccctc 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558033 tggtggctccggaagcgcaagactttggaccgccttgttgcttgttcagcacaaaccctc 143558092
Query: 1093 tggccgatcgactccttctcgatagtccgcaggcaaagcgagtgtaaggttgtagatgcg 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558093 tggccgatcgactccttctcgatagtccgcaggcaaagcgagtgtaaggttgtagatgcg 143558152
Query: 1153 caggcagagcccgcccttctgtatcctatgtatgcagtgtgctttctcccgccagcttgg 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558153 caggcagagcccgcccttctgtatcctatgtatgcagtgtgctttctcccgccagcttgg 143558212
Query: 1213 actgttccggctcggacagtcgacatctgtctcctcctttaactgagtcatcatcctagt 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558213 actgttccggctcggacagtcgacatctgtctcctcctttaactgagtcatcatcctagt 143558272
Query: 1273 ccagctaaggctgttgctgtaaagcatagataagaggaaggtcccgtgggagccagaatg 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558273 ccagctaaggctgttgctgtaaagcatagataagaggaaggtcccgtgggagccagaatg 143558332
Query: 1333 gtaccaggcgtgcttatgctttccttcgagtccgcacccagaggagggcgatgccgagac 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558333 gtaccaggcgtgcttatgctttccttcgagtccgcacccagaggagggcgatgccgagac 143558392
Query: 1393 cccagggagggcgaacgctggctcccaagatggccaaggttgcctctttttagaacctct 1452
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 143558393 ccaagggagggcgaacgctggctcccaagatggccaaggttgcctcttttaggaacctct 143558452
Query: 1453 tcaggactggggagcaccatgacttggagtttgagctattaaaatacttcttcata 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143558453 tcaggactggggagcaccatgacttggagtttgagctattaaaatacttcttcata 143558508
Score = 392 bits (198), Expect = e-106
Identities = 204/206 (99%)
Strand = Plus / Plus
Query: 91 gcttcctttttctaagagggaagtaccggtggccagtgggtctgggtttatcgtgtccga 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143526339 gcttcctttttctaagagggaagtaccggtggccagtgggtctgggtttatcgtgtccga 143526398
Query: 151 agatggactgattgtgacaaatgcccacgtggtgaccaacaagcaccgggtcaaagtcga 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143526399 agatggactgattgtgacaaatgcccacgtggtgaccaacaagcaccgggtcaaagtcga 143526458
Query: 211 gctgaagaacggcgccacctatgaagccaaaatcaaagatgtggatgagaaggcagacat 270
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 143526459 gctgaagaacggcgccacctacgaagccaaaatcaaagatgtggatgagaaggcagacat 143526518
Query: 271 cgcgcttatcaaaattgaccatcagg 296
|||||||||||||||||||||||||
Sbjct: 143526519 tgcgcttatcaaaattgaccatcagg 143526544
Score = 392 bits (198), Expect = e-106
Identities = 198/198 (100%)
Strand = Plus / Plus
Query: 293 cagggaaagctgcccgtgctactgcttggccgctcctccgagctgcggccgggggagttc 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143548169 cagggaaagctgcccgtgctactgcttggccgctcctccgagctgcggccgggggagttc 143548228
Query: 353 gtggtcgccatcggaagcccgttttcccttcaaaacacagtcaccaccggcatcgtcagc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143548229 gtggtcgccatcggaagcccgttttcccttcaaaacacagtcaccaccggcatcgtcagc 143548288
Query: 413 accacccagcgcggcggcaaagagctggggctgcggaactcggacatggactatatccag 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143548289 accacccagcgcggcggcaaagagctggggctgcggaactcggacatggactatatccag 143548348
Query: 473 acagacgccatcatcaac 490
||||||||||||||||||
Sbjct: 143548349 acagacgccatcatcaac 143548366
Score = 236 bits (119), Expect = 3e-59
Identities = 122/123 (99%)
Strand = Plus / Plus
Query: 523 ggacggtgaagtgataggcattaatactctgaaagtgacagctggaatctcctttgcaat 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143551959 ggacggtgaagtgataggcattaatactctgaaagtgacagctggaatctcctttgcaat 143552018
Query: 583 tccatccgacaagattaaaaagttcctaacggaatcccacgaccgacaagccaagggcaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 143552019 tccatccgacaagattaaaaagttcctaacggaatcccacgaccgacaagccaagggtaa 143552078
Query: 643 agc 645
|||
Sbjct: 143552079 agc 143552081
Score = 196 bits (99), Expect = 2e-47
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 694 cagcaaagccaaagagctgaaggatcgccaccgagacttcccagatgtgatttcaggagc 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143555874 cagcaaagccaaagagctgaaggatcgccaccgagacttcccagatgtgatttcaggagc 143555933
Query: 754 gtatatcattgaagtaattcctgatacccctgcagaagc 792
|||||||||||||||||||||||||||||||||||||||
Sbjct: 143555934 gtatatcattgaagtaattcctgatacccctgcagaagc 143555972
Score = 172 bits (87), Expect = 4e-40
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 1 tcccaacagtttgcgccacaaataccactttattgccgacgtggtggagaaaatcgctcc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 143525561 tcccaacagtttgcgccacaaatacaactttattgccgacgtggtggagaaaatcgctcc 143525620
Query: 61 tgctgtggttcacatcgaactgtttcgcaag 91
|||||||||||||||||||||||||||||||
Sbjct: 143525621 tgctgtggttcacatcgaactgtttcgcaag 143525651
Score = 117 bits (59), Expect = 2e-23
Identities = 59/59 (100%)
Strand = Plus / Plus
Query: 638 ggcaaagccatcaccaagaagaagtatattggcatccgaatgatgtcactcacgtccag 696
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143552664 ggcaaagccatcaccaagaagaagtatattggcatccgaatgatgtcactcacgtccag 143552722
Score = 67.9 bits (34), Expect = 2e-08
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 491 tatggaaattccggaggcccattagtaaacctgg 524
||||||||||||||||||||||||||||||||||
Sbjct: 143549600 tatggaaattccggaggcccattagtaaacctgg 143549633
>Sscrofa_Chr08
|| Length = 148491826
Score = 121 bits (61), Expect = 1e-24
Identities = 160/193 (82%)
Strand = Plus / Minus
Query: 298 aaagctgcccgtgctactgcttggccgctcctccgagctgcggccgggggagttcgtggt 357
|||||| |||| ||| ||||| |||| ||| | || |||||||| || |||||||||||
Sbjct: 4466083 aaagctccccgcgctgctgctgggccactcggctgacctgcggcccggcgagttcgtggt 4466024
Query: 358 cgccatcggaagcccgttttcccttcaaaacacagtcaccaccggcatcgtcagcaccac 417
|||||||| ||||| || |||| |||||||| || ||||| || ||||| ||||| |
Sbjct: 4466023 ggccatcggcagccccttcgccctgcaaaacaccgtgaccacggggatcgtgagcacggc 4465964
Query: 418 ccagcgcggcggcaaagagctggggctgcggaactcggacatggactatatccagacaga 477
|||||| | |||| |||||||| || ||| ||||||||||||||||||||||||||||
Sbjct: 4465963 ccagcgggacggccgcgagctgggcctccgggactcggacatggactatatccagacaga 4465904
Query: 478 cgccatcatcaac 490
||||||||||||
Sbjct: 4465903 tgccatcatcaac 4465891
>Sscrofa_Chr15
|| Length = 157681621
Score = 73.8 bits (37), Expect = 2e-10
Identities = 112/137 (81%)
Strand = Plus / Minus
Query: 347 gagttcgtggtcgccatcggaagcccgttttcccttcaaaacacagtcaccaccggcatc 406
||||||||||| ||| | |||||||| ||||| || || |||||||| ||| | || ||
Sbjct: 54694665 gagttcgtggtggccttgggaagcccattttctctgcagaacacagtgaccgcgggaatt 54694606
Query: 407 gtcagcaccacccagcgcggcggcaaagagctggggctgcggaactcggacatggactat 466
|||||||| || ||||| || ||||||||| |||||||| | | || ||||||||||||
Sbjct: 54694605 gtcagcacgacacagcgaggaggcaaagagttggggctgaaggattcagacatggactat 54694546
Query: 467 atccagacagacgccat 483
|| ||||| || |||||
Sbjct: 54694545 attcagactgatgccat 54694529
Score = 73.8 bits (37), Expect = 2e-10
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 347 gagttcgtggtcgccatcggaagcccgttttcccttcaaaacacagtcaccaccggcatc 406
||||||||||| ||| | |||||||| ||||| || || |||||||| ||| | || ||
Sbjct: 54846862 gagttcgtggtggccttgggaagcccattttctctgcagaacacagtgaccgcgggaatt 54846921
Query: 407 gtcagcaccacccagcgcggcggcaaagagctggggctgcggaactcggacatggactat 466
|||||||| || ||||| || ||||||||| |||||||| | | || ||||||||||||
Sbjct: 54846922 gtcagcacgacacagcgaggaggcaaagagttggggctgaaggattcagacatggactat 54846981
Query: 467 atccagacagacgccat 483
|| ||||| || |||||
Sbjct: 54846982 attcagactgatgccat 54846998
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,693,449
Number of extensions: 162
Number of successful extensions: 162
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 11
Length of query: 1509
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1488
Effective length of database: 2,808,413,156
Effective search space: 4178918776128
Effective search space used: 4178918776128
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)