Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001070383.1| regulator of G-protein signaling 19 [Bos tau... 287 2e-77
Alignment gi|NP_001069795.1| regulator of G-protein signaling 20 [Bos tau... 207 1e-53
Alignment gi|NP_001095306.1| regulator of G-protein signaling 17 [Bos tau... 193 4e-49
Alignment gi|NP_776875.1| regulator of G-protein signaling 16 [Bos taurus]. 123 4e-28
Alignment gi|NP_001040065.1| regulator of G-protein signaling 4 [Bos taur... 122 6e-28
Alignment gi|NP_001069064.1| regulator of G-protein signaling 2 [Bos taur... 121 2e-27
Alignment gi|XP_002686857.1| PREDICTED: regulator of G-protein signaling ... 121 2e-27
Alignment gi|XP_873525.2| PREDICTED: regulator of G-protein signaling 2 [... 121 2e-27
Alignment gi|XP_002693976.1| PREDICTED: regulator of G-protein signaling ... 120 4e-27
Alignment gi|XP_002701547.1| PREDICTED: regulator of G-protein signaling ... 120 4e-27
>ref|NP_001070383.1| regulator of G-protein signaling 19 [Bos taurus].
Length = 223
Score = 287 bits (734), Expect = 2e-77
Identities = 153/223 (68%), Positives = 159/223 (71%), Gaps = 6/223 (2%)
Frame = +3
Query: 549 MPTPHEAEKQHRGPEEADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 728
MPTP EAEKQ GPEEADQ
Sbjct: 1 MPTPPEAEKQQTGPEEADQPPSMSSHDAAPPAPPRRNPCCLCWCCCCSCSWNEERRRAWR 60
Query: 729 XXXXXXPQPLPSCEVCATPSP------EEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSE 890
QPLPSCEVCATP+P EEV+SWAQSFDKLM SPAGR FR FLRTEYSE
Sbjct: 61 ASRESRLQPLPSCEVCATPTPTPTPTPEEVRSWAQSFDKLMHSPAGRSVFREFLRTEYSE 120
Query: 891 ENMLFWLACEELKAEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSA 1070
ENMLFWLACEELKAEA++H VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSA
Sbjct: 121 ENMLFWLACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSA 180
Query: 1071 HTFDDAQLQIYTLMHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
HTFDDAQLQIYTLMHRDSYPRFL+SPAYRALLLQG S SS+EA
Sbjct: 181 HTFDDAQLQIYTLMHRDSYPRFLSSPAYRALLLQGASQSSSEA 223
>ref|NP_001069795.1| regulator of G-protein signaling 20 [Bos taurus].
Length = 218
Score = 207 bits (528), Expect = 1e-53
Identities = 99/139 (71%), Positives = 116/139 (83%)
Frame = +3
Query: 750 QPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELK 929
+ LP+CE P+ EE +WAQSFDKLM +PAGR AFR FLRTE+SEENMLFW+ACEELK
Sbjct: 70 EDLPTCEESPGPTLEEASAWAQSFDKLMLTPAGRNAFREFLRTEFSEENMLFWMACEELK 129
Query: 930 AEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 1109
EA++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ M EPS + FDDAQLQIYTL
Sbjct: 130 KEANKATIEEKARIIYEDYISILSPKEVSLDSRVRETINRSMAEPSRNIFDDAQLQIYTL 189
Query: 1110 MHRDSYPRFLTSPAYRALL 1166
MHRDSYPRF+ S Y+ LL
Sbjct: 190 MHRDSYPRFMNSALYKDLL 208
>ref|NP_001095306.1| regulator of G-protein signaling 17 [Bos taurus].
Length = 210
Score = 193 bits (490), Expect = 4e-49
Identities = 88/141 (62%), Positives = 114/141 (80%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTSNEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IY+DY+SILSPKEVSLDSRVRE IN+ + +P+ H ++DAQLQIYTLMHRDS+
Sbjct: 128 VIEEKARMIYDDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + S +S
Sbjct: 188 PRFLNSQIYKSFVESTASSTS 208
>ref|NP_776875.1| regulator of G-protein signaling 16 [Bos taurus].
Length = 202
Score = 123 bits (308), Expect = 4e-28
Identities = 65/147 (44%), Positives = 91/147 (61%)
Frame = +3
Query: 792 EEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKARL 971
E+V W +SFD L+ S G AF AFL+TE+SEEN+ FWLACEE K + +A
Sbjct: 57 EDVLGWKESFDLLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKLRSATKLGSRAHR 116
Query: 972 IYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTSPA 1151
I+E+++ +PKEV++D RE +Q +A FD AQ ++ LM +DSYPRFL SPA
Sbjct: 117 IFEEFICSEAPKEVNIDHETRELTRTNLQAATAVCFDAAQWKVRALMEKDSYPRFLKSPA 176
Query: 1152 YRALLLQGGSPSSTEA*AASRAPPAGT 1232
YR L Q + S++ + ++S A P T
Sbjct: 177 YRDLATQATAASASPS-SSSPAEPLHT 202
>ref|NP_001040065.1| regulator of G-protein signaling 4 [Bos taurus].
Length = 205
Score = 122 bits (307), Expect = 6e-28
Identities = 64/150 (42%), Positives = 93/150 (62%), Gaps = 8/150 (5%)
Frame = +3
Query: 771 VCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHA 950
+C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K
Sbjct: 47 ICQRVSHEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSK 106
Query: 951 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 1130
+ KA+ IY +++S+ + KEV+LDS RE ++ M EP+ FD+AQ +I+ LM +DSY
Sbjct: 107 LSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQRKIFNLMEKDSYR 166
Query: 1131 RFLTSPAYRALL--------LQGGSPSSTE 1196
RFL S Y L+ Q G+ SST+
Sbjct: 167 RFLKSRFYLDLVNLSSCGSEKQKGAKSSTD 196
>ref|NP_001069064.1| regulator of G-protein signaling 2 [Bos taurus].
Length = 211
Score = 121 bits (303), Expect = 2e-27
Identities = 56/127 (44%), Positives = 85/127 (66%)
Frame = +3
Query: 783 PSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEK 962
PSPEE Q W+++FD+L+ S G AFRAFL++E+ EEN+ FWLACE+ K + K
Sbjct: 72 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 131
Query: 963 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLT 1142
A+ IY D++ +PKE+++D + + I + +QE ++ F AQ ++Y+LM +SYPRFL
Sbjct: 132 AKKIYTDFIEKEAPKEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLE 191
Query: 1143 SPAYRAL 1163
S Y+ L
Sbjct: 192 SEFYQDL 198
>ref|XP_002686857.1| PREDICTED: regulator of G-protein signaling 2-like [Bos taurus].
Length = 211
Score = 121 bits (303), Expect = 2e-27
Identities = 56/127 (44%), Positives = 85/127 (66%)
Frame = +3
Query: 783 PSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEK 962
PSPEE Q W+++FD+L+ S G AFRAFL++E+ EEN+ FWLACE+ K + K
Sbjct: 72 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 131
Query: 963 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLT 1142
A+ IY D++ +PKE+++D + + I + +QE ++ F AQ ++Y+LM +SYPRFL
Sbjct: 132 AKKIYTDFIEKEAPKEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLE 191
Query: 1143 SPAYRAL 1163
S Y+ L
Sbjct: 192 SEFYQDL 198
>ref|XP_873525.2| PREDICTED: regulator of G-protein signaling 2 [Bos taurus].
Length = 211
Score = 121 bits (303), Expect = 2e-27
Identities = 56/127 (44%), Positives = 85/127 (66%)
Frame = +3
Query: 783 PSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEK 962
PSPEE Q W+++FD+L+ S G AFRAFL++E+ EEN+ FWLACE+ K + K
Sbjct: 72 PSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 131
Query: 963 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLT 1142
A+ IY D++ +PKE+++D + + I + +QE ++ F AQ ++Y+LM +SYPRFL
Sbjct: 132 AKKIYTDFIEKEAPKEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLE 191
Query: 1143 SPAYRAL 1163
S Y+ L
Sbjct: 192 SEFYQDL 198
>ref|XP_002693976.1| PREDICTED: regulator of G-protein signaling 2-like [Bos taurus].
Length = 152
Score = 120 bits (300), Expect = 4e-27
Identities = 56/129 (43%), Positives = 87/129 (67%)
Frame = +3
Query: 780 TPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDE 959
+P+ E V +W+++ D L+ + AG AFR FL++E+SEEN+ FWLACE+ K +
Sbjct: 10 SPTTETV-AWSENMDTLLTNQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTESAEKIAS 68
Query: 960 KARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFL 1139
KAR+IY +++ +PKE+++D R+ I+K + EP+ FD+AQ IY+LM DS+PRFL
Sbjct: 69 KARMIYSEFIEADAPKEINIDFSTRDLISKNIAEPTLKCFDEAQKLIYSLMANDSFPRFL 128
Query: 1140 TSPAYRALL 1166
S Y+ L+
Sbjct: 129 KSEIYKKLV 137
>ref|XP_002701547.1| PREDICTED: regulator of G-protein signaling 2-like [Bos taurus].
Length = 152
Score = 120 bits (300), Expect = 4e-27
Identities = 56/129 (43%), Positives = 87/129 (67%)
Frame = +3
Query: 780 TPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDE 959
+P+ E V +W+++ D L+ + AG AFR FL++E+SEEN+ FWLACE+ K +
Sbjct: 10 SPTTETV-AWSENMDTLLTNQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTESAEKIAS 68
Query: 960 KARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFL 1139
KAR+IY +++ +PKE+++D R+ I+K + EP+ FD+AQ IY+LM DS+PRFL
Sbjct: 69 KARMIYSEFIEADAPKEINIDFSTRDLISKNIAEPTLKCFDEAQKLIYSLMANDSFPRFL 128
Query: 1140 TSPAYRALL 1166
S Y+ L+
Sbjct: 129 KSEIYKKLV 137
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,528,188
Number of extensions: 1626869
Number of successful extensions: 12467
Number of sequences better than 1.0e-05: 37
Number of HSP's gapped: 11987
Number of HSP's successfully gapped: 37
Length of query: 468
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 362
Effective length of database: 14,174,046
Effective search space: 5131004652
Effective search space used: 5131004652
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548528.2| PREDICTED: similar to Regulator of G-protein si... 278 7e-75
Alignment gi|XP_848801.1| PREDICTED: similar to Regulator of G-protein si... 211 1e-54
Alignment gi|XP_544083.2| PREDICTED: similar to regulator of G-protein si... 211 1e-54
Alignment gi|XP_857015.1| PREDICTED: similar to Regulator of G-protein si... 211 1e-54
Alignment gi|XP_862141.1| PREDICTED: similar to Regulator of G-protein si... 195 1e-49
Alignment gi|XP_850692.1| PREDICTED: similar to Regulator of G-protein si... 195 1e-49
Alignment gi|XP_862114.1| PREDICTED: similar to Regulator of G-protein si... 192 9e-49
Alignment gi|XP_849550.1| PREDICTED: similar to regulator of G-protein si... 130 2e-30
Alignment gi|XP_859033.1| PREDICTED: similar to Regulator of G-protein si... 130 2e-30
Alignment gi|XP_547431.2| PREDICTED: similar to Regulator of G-protein si... 130 2e-30
>ref|XP_548528.2| PREDICTED: similar to Regulator of G-protein signaling 19 (RGS19)
(G-alpha interacting protein) (GAIP protein) [Canis
familiaris].
Length = 178
Score = 278 bits (712), Expect = 7e-75
Identities = 136/150 (90%), Positives = 141/150 (94%)
Frame = +3
Query: 750 QPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELK 929
QPLPSCE CATPSPEEV+SWAQSFDKLM SPAGRG FR FLRTEYSEENMLFWLACEELK
Sbjct: 29 QPLPSCEACATPSPEEVRSWAQSFDKLMHSPAGRGVFREFLRTEYSEENMLFWLACEELK 88
Query: 930 AEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 1109
AEA++H VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL
Sbjct: 89 AEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 148
Query: 1110 MHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
MHRDSYPRFL+SP YRALLL+G S SS EA
Sbjct: 149 MHRDSYPRFLSSPTYRALLLRGSSQSSHEA 178
>ref|XP_848801.1| PREDICTED: similar to Regulator of G-protein signaling 20 (RGS20)
(Regulator of Gz-selective protein signaling 1)
(Gz-selective GTPase-activating protein) (G(z)GAP)
isoform 2 [Canis familiaris].
Length = 381
Score = 211 bits (538), Expect = 1e-54
Identities = 105/150 (70%), Positives = 122/150 (81%)
Frame = +3
Query: 750 QPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELK 929
+ LPSCE +P+ EEV +W+QSFDK+M +PAGR AFR FLRTE+SEENMLFW+ACEELK
Sbjct: 233 EDLPSCEESPSPTLEEVNAWSQSFDKVMLTPAGRNAFREFLRTEFSEENMLFWMACEELK 292
Query: 930 AEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 1109
EA++ ++EKAR IYEDY+SILSPKEVSLDSRVRE IN+ M EPS H FDDAQLQIYTL
Sbjct: 293 KEANKTIIEEKARTIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTL 352
Query: 1110 MHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
MHRDSYPRF+ S Y+ LLQ S S EA
Sbjct: 353 MHRDSYPRFMNSALYKD-LLQSLSEKSAEA 381
>ref|XP_544083.2| PREDICTED: similar to regulator of G-protein signalling 20 isoform b
isoform 1 [Canis familiaris].
Length = 273
Score = 211 bits (538), Expect = 1e-54
Identities = 105/150 (70%), Positives = 122/150 (81%)
Frame = +3
Query: 750 QPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELK 929
+ LPSCE +P+ EEV +W+QSFDK+M +PAGR AFR FLRTE+SEENMLFW+ACEELK
Sbjct: 125 EDLPSCEESPSPTLEEVNAWSQSFDKVMLTPAGRNAFREFLRTEFSEENMLFWMACEELK 184
Query: 930 AEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 1109
EA++ ++EKAR IYEDY+SILSPKEVSLDSRVRE IN+ M EPS H FDDAQLQIYTL
Sbjct: 185 KEANKTIIEEKARTIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTL 244
Query: 1110 MHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
MHRDSYPRF+ S Y+ LLQ S S EA
Sbjct: 245 MHRDSYPRFMNSALYKD-LLQSLSEKSAEA 273
>ref|XP_857015.1| PREDICTED: similar to Regulator of G-protein signaling 20 (RGS20)
(Regulator of Gz-selective protein signaling 1)
(Gz-selective GTPase-activating protein) (G(z)GAP)
isoform 3 [Canis familiaris].
Length = 375
Score = 211 bits (538), Expect = 1e-54
Identities = 105/150 (70%), Positives = 122/150 (81%)
Frame = +3
Query: 750 QPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELK 929
+ LPSCE +P+ EEV +W+QSFDK+M +PAGR AFR FLRTE+SEENMLFW+ACEELK
Sbjct: 227 EDLPSCEESPSPTLEEVNAWSQSFDKVMLTPAGRNAFREFLRTEFSEENMLFWMACEELK 286
Query: 930 AEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTL 1109
EA++ ++EKAR IYEDY+SILSPKEVSLDSRVRE IN+ M EPS H FDDAQLQIYTL
Sbjct: 287 KEANKTIIEEKARTIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTL 346
Query: 1110 MHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
MHRDSYPRF+ S Y+ LLQ S S EA
Sbjct: 347 MHRDSYPRFMNSALYKD-LLQSLSEKSAEA 375
>ref|XP_862141.1| PREDICTED: similar to Regulator of G-protein signaling 17 (RGS17)
isoform 3 [Canis familiaris].
Length = 213
Score = 195 bits (495), Expect = 1e-49
Identities = 89/141 (63%), Positives = 115/141 (81%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ +EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 71 EECQNPTSDEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 130
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ H ++DAQLQIYTLMHRDS+
Sbjct: 131 VIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSF 190
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + S +S
Sbjct: 191 PRFLNSQIYKSFVESTASSTS 211
>ref|XP_850692.1| PREDICTED: similar to Regulator of G-protein signaling 17 (RGS17)
isoform 1 [Canis familiaris].
Length = 210
Score = 195 bits (495), Expect = 1e-49
Identities = 89/141 (63%), Positives = 115/141 (81%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ +EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTSDEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ H ++DAQLQIYTLMHRDS+
Sbjct: 128 VIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + S +S
Sbjct: 188 PRFLNSQIYKSFVESTASSTS 208
>ref|XP_862114.1| PREDICTED: similar to Regulator of G-protein signaling 17 (RGS17)
isoform 2 [Canis familiaris].
Length = 148
Score = 192 bits (487), Expect = 9e-49
Identities = 88/142 (61%), Positives = 114/142 (80%)
Frame = +3
Query: 765 CEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADR 944
C P+ +EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 5 CLCSQNPTSDEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNK 64
Query: 945 HAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDS 1124
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ H ++DAQLQIYTLMHRDS
Sbjct: 65 KVIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDS 124
Query: 1125 YPRFLTSPAYRALLLQGGSPSS 1190
+PRFL S Y++ + S +S
Sbjct: 125 FPRFLNSQIYKSFVESTASSTS 146
>ref|XP_849550.1| PREDICTED: similar to regulator of G-protein signalling 8 isoform 2
[Canis familiaris].
Length = 198
Score = 130 bits (328), Expect = 2e-30
Identities = 65/129 (50%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 64 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 123
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 124 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 183
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 184 KMYLDLLSQ 192
>ref|XP_859033.1| PREDICTED: similar to Regulator of G-protein signaling 8 (RGS8)
isoform 3 [Canis familiaris].
Length = 180
Score = 130 bits (328), Expect = 2e-30
Identities = 65/129 (50%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
>ref|XP_547431.2| PREDICTED: similar to Regulator of G-protein signaling 8 (RGS8)
isoform 1 [Canis familiaris].
Length = 327
Score = 130 bits (328), Expect = 2e-30
Identities = 65/129 (50%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
Score = 128 bits (322), Expect = 1e-29
Identities = 68/147 (46%), Positives = 92/147 (62%)
Frame = +3
Query: 792 EEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKARL 971
E+V W +SFD L+ S G AF AFL+TE+SEEN+ FWLACEE K + +A
Sbjct: 182 EDVLGWKESFDSLLSSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKLRSAAKLASRAHK 241
Query: 972 IYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTSPA 1151
I+E+++ +PKEV++D RE K +Q +A FD AQ +I TLM +DSYPRFL SPA
Sbjct: 242 IFEEFIRSEAPKEVNIDHETRELTEKNLQAATATCFDVAQGKIRTLMEKDSYPRFLKSPA 301
Query: 1152 YRALLLQGGSPSSTEA*AASRAPPAGT 1232
YR L Q + S++++ S A P T
Sbjct: 302 YRDLAAQASAASASQS-GCSPAEPLHT 327
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,741,619
Number of extensions: 1687690
Number of successful extensions: 12833
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 12442
Number of HSP's successfully gapped: 35
Length of query: 468
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 362
Effective length of database: 15,340,888
Effective search space: 5553401456
Effective search space used: 5553401456
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927312.2| PREDICTED: regulator of G-protein signaling ... 200 1e-51
Alignment gi|XP_003353227.1| PREDICTED: regulator of G-protein signaling ... 194 1e-49
Alignment gi|XP_003121184.1| PREDICTED: regulator of G-protein signaling ... 194 1e-49
Alignment gi|XP_003357620.1| PREDICTED: regulator of G-protein signaling ... 130 1e-30
Alignment gi|XP_003357619.1| PREDICTED: regulator of G-protein signaling ... 130 1e-30
Alignment gi|NP_001106488.1| regulator of G-protein signaling 16 [Sus scr... 125 7e-29
Alignment gi|NP_001038065.1| regulator of G-protein signaling 2 [Sus scro... 123 3e-28
Alignment gi|NP_001230822.1| regulator of G-protein signaling 18 [Sus scr... 121 8e-28
Alignment gi|XP_003130531.1| PREDICTED: regulator of G-protein signaling ... 120 1e-27
Alignment gi|NP_001172113.1| regulator of G-protein signaling 4 [Sus scro... 120 1e-27
>ref|XP_001927312.2| PREDICTED: regulator of G-protein signaling 20-like [Sus scrofa].
Length = 242
Score = 200 bits (509), Expect = 1e-51
Identities = 95/137 (69%), Positives = 116/137 (84%)
Frame = +3
Query: 756 LPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAE 935
LP+CE +P+ EE +WA+SF++LM + AGR AFR FLRTE+SEEN+LFW+ACEELK E
Sbjct: 96 LPTCEESPSPTLEEASAWARSFEQLMLTAAGRNAFREFLRTEFSEENLLFWMACEELKKE 155
Query: 936 ADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMH 1115
A++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE I++ M EPS H FDDAQLQIYTLMH
Sbjct: 156 ANKTIIEEKARIIYEDYISILSPKEVSLDSRVRELIDRNMAEPSPHIFDDAQLQIYTLMH 215
Query: 1116 RDSYPRFLTSPAYRALL 1166
RDSYPRFL+S Y+ LL
Sbjct: 216 RDSYPRFLSSTLYKDLL 232
>ref|XP_003353227.1| PREDICTED: regulator of G-protein signaling 17-like isoform 2 [Sus
scrofa].
Length = 210
Score = 194 bits (492), Expect = 1e-49
Identities = 89/141 (63%), Positives = 115/141 (81%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+P+EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTPDEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ ++DAQLQIYTLMHRDS+
Sbjct: 128 VIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPLMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + S +S
Sbjct: 188 PRFLNSQIYKSFVESTASSTS 208
>ref|XP_003121184.1| PREDICTED: regulator of G-protein signaling 17-like isoform 1 [Sus
scrofa].
Length = 210
Score = 194 bits (492), Expect = 1e-49
Identities = 89/141 (63%), Positives = 115/141 (81%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+P+EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTPDEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ ++DAQLQIYTLMHRDS+
Sbjct: 128 VIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPLMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + S +S
Sbjct: 188 PRFLNSQIYKSFVESTASSTS 208
>ref|XP_003357620.1| PREDICTED: regulator of G-protein signaling 8-like isoform 2 [Sus
scrofa].
Length = 180
Score = 130 bits (328), Expect = 1e-30
Identities = 65/129 (50%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
>ref|XP_003357619.1| PREDICTED: regulator of G-protein signaling 8-like isoform 1 [Sus
scrofa].
Length = 180
Score = 130 bits (328), Expect = 1e-30
Identities = 65/129 (50%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
>ref|NP_001106488.1| regulator of G-protein signaling 16 [Sus scrofa].
Length = 202
Score = 125 bits (313), Expect = 7e-29
Identities = 69/147 (46%), Positives = 90/147 (61%)
Frame = +3
Query: 792 EEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKARL 971
E+V W +SFD L+ S G AF FL+TE+SEEN+ FWLACEE K + +A
Sbjct: 57 EDVLGWRESFDLLLSSKNGVAAFHTFLKTEFSEENLEFWLACEEFKKLRSATKLASRAHR 116
Query: 972 IYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTSPA 1151
I+E+++ +PKEV+LD RE +Q SA FD AQ + TLM +DSYPRFL SPA
Sbjct: 117 IFEEFIRSEAPKEVNLDHETRELTRTNLQAASATCFDVAQGKTRTLMEKDSYPRFLKSPA 176
Query: 1152 YRALLLQGGSPSSTEA*AASRAPPAGT 1232
YR L Q S +S A ++S A P+ T
Sbjct: 177 YRDLAAQ-ASAASASASSSSPAEPSHT 202
>ref|NP_001038065.1| regulator of G-protein signaling 2 [Sus scrofa].
Length = 212
Score = 123 bits (308), Expect = 3e-28
Identities = 58/127 (45%), Positives = 85/127 (66%)
Frame = +3
Query: 783 PSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEK 962
PSPEE Q WA++FD+L+ S G AFRAFL++E+ EEN+ FWLACE+ K + K
Sbjct: 72 PSPEEAQLWAEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 131
Query: 963 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLT 1142
AR IY D++ +PKE+++D + + I + +QE ++ F AQ ++Y+LM +SYPRFL
Sbjct: 132 ARKIYTDFIEKEAPKEINIDFQTKTLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLE 191
Query: 1143 SPAYRAL 1163
S Y+ L
Sbjct: 192 SEFYQDL 198
>ref|NP_001230822.1| regulator of G-protein signaling 18 [Sus scrofa].
Length = 235
Score = 121 bits (304), Expect = 8e-28
Identities = 56/127 (44%), Positives = 81/127 (63%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
SPEE W +SFDKL+ G F FL+TE+S+EN+ FW+ACE+ K D + KA
Sbjct: 76 SPEEAMIWGESFDKLLSQKDGLETFTRFLKTEFSDENIAFWIACEDYKKSKDPQQIIRKA 135
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
+ IYE ++ +P+EV+LD +E + K + +P+ H+FD AQ ++Y LM +DSY RFL S
Sbjct: 136 KAIYETFIQTDAPQEVNLDFHTKEILAKSITQPTLHSFDAAQSRVYQLMEQDSYTRFLKS 195
Query: 1146 PAYRALL 1166
Y L+
Sbjct: 196 DIYLDLI 202
>ref|XP_003130531.1| PREDICTED: regulator of G-protein signaling 21-like [Sus scrofa].
Length = 152
Score = 120 bits (302), Expect = 1e-27
Identities = 54/126 (42%), Positives = 85/126 (67%)
Frame = +3
Query: 789 PEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKAR 968
P E +W+++ D L+ + AG AFR FL++E+SEEN+ FWLACE+ K + KA+
Sbjct: 12 PTETMAWSENMDTLLSNQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTESAEKLVSKAK 71
Query: 969 LIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTSP 1148
+IY +++ +PKE+++D R+ I+K + EP+ FD+AQ IY+LM +DS+PRFL S
Sbjct: 72 VIYSEFIEADAPKEINIDFSTRDLISKNIAEPTRKCFDEAQKLIYSLMAKDSFPRFLKSE 131
Query: 1149 AYRALL 1166
Y+ L+
Sbjct: 132 IYKELV 137
>ref|NP_001172113.1| regulator of G-protein signaling 4 [Sus scrofa].
Length = 205
Score = 120 bits (302), Expect = 1e-27
Identities = 63/150 (42%), Positives = 91/150 (60%), Gaps = 8/150 (5%)
Frame = +3
Query: 771 VCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHA 950
+C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K
Sbjct: 47 ICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSK 106
Query: 951 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 1130
+ +A+ IY +++S+ KEV+LDS RE ++ M EP+ FD+AQ +I+ LM +DSY
Sbjct: 107 LSPRAKKIYNEFISVQQTKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYR 166
Query: 1131 RFLTSPAYRALL--------LQGGSPSSTE 1196
RFL S Y L Q G+ SST+
Sbjct: 167 RFLKSRFYLDLANLSSCGSEKQKGAKSSTD 196
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,200,518
Number of extensions: 1072104
Number of successful extensions: 8233
Number of sequences better than 1.0e-05: 19
Number of HSP's gapped: 7876
Number of HSP's successfully gapped: 19
Length of query: 468
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 365
Effective length of database: 8,779,541
Effective search space: 3204532465
Effective search space used: 3204532465
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080722.1| regulator of G-protein signaling 19 [Mus muscul... 288 7e-78
Alignment gi|NP_067349.2| regulator of G-protein signaling 20 isoform 2 [... 209 5e-54
Alignment gi|NP_001171266.1| regulator of G-protein signaling 20 isoform ... 209 5e-54
Alignment gi|NP_001155294.1| regulator of G-protein signaling 17 isoform ... 198 1e-50
Alignment gi|NP_064342.1| regulator of G-protein signaling 17 isoform 2 [... 198 1e-50
Alignment gi|NP_080656.2| regulator of G-protein signaling 8 [Mus musculu... 131 1e-30
Alignment gi|NP_035397.2| regulator of G-protein signaling 16 [Mus muscul... 125 8e-29
Alignment gi|NP_033087.2| regulator of G-protein signaling 2 [Mus musculu... 123 3e-28
Alignment gi|NP_075019.1| regulator of G-protein signaling 18 [Mus muscul... 121 1e-27
Alignment gi|NP_033088.2| regulator of G-protein signaling 4 [Mus musculu... 120 3e-27
>ref|NP_080722.1| regulator of G-protein signaling 19 [Mus musculus].
Length = 216
Score = 288 bits (737), Expect = 7e-78
Identities = 149/217 (68%), Positives = 157/217 (72%)
Frame = +3
Query: 549 MPTPHEAEKQHRGPEEADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 728
MPTPHEAEKQH GPEEAD+
Sbjct: 1 MPTPHEAEKQHTGPEEADRPPSMSSHDAAPSGPPSRNPCCLCWCCCCSCSWNQERQRAWQ 60
Query: 729 XXXXXXPQPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFW 908
QPLPSCEVC PSP+EVQSWAQSFDKLM SP GR FRAFLRTEYSEENMLFW
Sbjct: 61 VSRESKLQPLPSCEVCTPPSPKEVQSWAQSFDKLMHSPTGRSVFRAFLRTEYSEENMLFW 120
Query: 909 LACEELKAEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA 1088
LACEELKAEA++H VDEKARLIYEDYVSILSPKEVSLDSRVREGIN+KMQEPS HTFDDA
Sbjct: 121 LACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINRKMQEPSPHTFDDA 180
Query: 1089 QLQIYTLMHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
QLQIYTLMHRDSYPRFLTSP YR+LLLQ G+P S+EA
Sbjct: 181 QLQIYTLMHRDSYPRFLTSPTYRSLLLQ-GAPQSSEA 216
>ref|NP_067349.2| regulator of G-protein signaling 20 isoform 2 [Mus musculus].
Length = 239
Score = 209 bits (531), Expect = 5e-54
Identities = 99/137 (72%), Positives = 116/137 (84%)
Frame = +3
Query: 756 LPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAE 935
+P+CE TP+ EEV +WAQSFD LM +PAGR AFR FLRTE+SEENMLFW+ACEELK E
Sbjct: 93 IPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKRE 152
Query: 936 ADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMH 1115
A++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ M +PS H FDDAQLQIYTLMH
Sbjct: 153 ANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYTLMH 212
Query: 1116 RDSYPRFLTSPAYRALL 1166
RDSYPRF+ S Y+ LL
Sbjct: 213 RDSYPRFMNSTVYKDLL 229
>ref|NP_001171266.1| regulator of G-protein signaling 20 isoform 1 [Mus musculus].
Length = 372
Score = 209 bits (531), Expect = 5e-54
Identities = 99/137 (72%), Positives = 116/137 (84%)
Frame = +3
Query: 756 LPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAE 935
+P+CE TP+ EEV +WAQSFD LM +PAGR AFR FLRTE+SEENMLFW+ACEELK E
Sbjct: 226 IPACEESPTPTLEEVCAWAQSFDNLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKRE 285
Query: 936 ADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMH 1115
A++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ M +PS H FDDAQLQIYTLMH
Sbjct: 286 ANKSTIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVDPSQHIFDDAQLQIYTLMH 345
Query: 1116 RDSYPRFLTSPAYRALL 1166
RDSYPRF+ S Y+ LL
Sbjct: 346 RDSYPRFMNSTVYKDLL 362
>ref|NP_001155294.1| regulator of G-protein signaling 17 isoform 1 [Mus musculus].
Length = 230
Score = 198 bits (503), Expect = 1e-50
Identities = 91/133 (68%), Positives = 113/133 (84%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ +EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 88 EECQNPTADEVLSWSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 147
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
AV+EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +PS H ++DAQLQIYTLMHRDS+
Sbjct: 148 AVEEKARMIYEDYISILSPKEVSLDSRVREVINRSLLDPSPHMYEDAQLQIYTLMHRDSF 207
Query: 1128 PRFLTSPAYRALL 1166
PRFL S Y+A +
Sbjct: 208 PRFLNSQIYKAFV 220
>ref|NP_064342.1| regulator of G-protein signaling 17 isoform 2 [Mus musculus].
Length = 210
Score = 198 bits (503), Expect = 1e-50
Identities = 91/133 (68%), Positives = 113/133 (84%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ +EV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTADEVLSWSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
AV+EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +PS H ++DAQLQIYTLMHRDS+
Sbjct: 128 AVEEKARMIYEDYISILSPKEVSLDSRVREVINRSLLDPSPHMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALL 1166
PRFL S Y+A +
Sbjct: 188 PRFLNSQIYKAFV 200
>ref|NP_080656.2| regulator of G-protein signaling 8 [Mus musculus].
Length = 180
Score = 131 bits (329), Expect = 1e-30
Identities = 65/129 (50%), Positives = 85/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA+SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWAESFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVTKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K MQEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNMQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
>ref|NP_035397.2| regulator of G-protein signaling 16 [Mus musculus].
Length = 201
Score = 125 bits (314), Expect = 8e-29
Identities = 68/147 (46%), Positives = 90/147 (61%)
Frame = +3
Query: 792 EEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKARL 971
E+V W +SFD L+ S G AF AFL+TE+SEEN+ FWLACEE K + +A
Sbjct: 56 EDVLGWRESFDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHH 115
Query: 972 IYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTSPA 1151
I+++Y+ +PKEV++D RE +Q + FD AQ + TLM +DSYPRFL SPA
Sbjct: 116 IFDEYIRSEAPKEVNIDHETRELTKTNLQAATTSCFDVAQGKTRTLMEKDSYPRFLKSPA 175
Query: 1152 YRALLLQGGSPSSTEA*AASRAPPAGT 1232
YR L Q S +ST A + S A P+ T
Sbjct: 176 YRDLAAQ-ASATSTSAPSGSPAEPSHT 201
>ref|NP_033087.2| regulator of G-protein signaling 2 [Mus musculus].
Length = 211
Score = 123 bits (309), Expect = 3e-28
Identities = 58/127 (45%), Positives = 85/127 (66%)
Frame = +3
Query: 783 PSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEK 962
PSPEE Q WA++FD+L+ S G AFRAFL++E+ EEN+ FWLACE+ K + K
Sbjct: 72 PSPEEAQLWAEAFDELLASKYGLAAFRAFLKSEFCEENIEFWLACEDFKKTKSPQKLSSK 131
Query: 963 ARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLT 1142
AR IY D++ +PKE+++D + + I + +QE ++ F AQ ++Y+LM +SYPRFL
Sbjct: 132 ARKIYTDFIEKEAPKEINIDFQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLE 191
Query: 1143 SPAYRAL 1163
S Y+ L
Sbjct: 192 SEFYQDL 198
>ref|NP_075019.1| regulator of G-protein signaling 18 [Mus musculus].
Length = 235
Score = 121 bits (304), Expect = 1e-27
Identities = 59/127 (46%), Positives = 82/127 (64%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
SPEE WA+SFDKL+ G AF FL+TE+SEEN+ FW+ACE+ K + + KA
Sbjct: 76 SPEEAVKWAESFDKLLSHRDGVDAFTRFLKTEFSEENIEFWVACEDFKKCKEPQQIILKA 135
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
+ IYE ++ +PKEV++D +E I K + +P+ H+FD AQ ++Y LM DSY RFL S
Sbjct: 136 KAIYEKFIQNDAPKEVNIDFHTKEVIAKSIAQPTLHSFDTAQSRVYQLMEHDSYKRFLKS 195
Query: 1146 PAYRALL 1166
Y L+
Sbjct: 196 ETYLHLI 202
>ref|NP_033088.2| regulator of G-protein signaling 4 [Mus musculus].
Length = 205
Score = 120 bits (300), Expect = 3e-27
Identities = 62/142 (43%), Positives = 89/142 (62%)
Frame = +3
Query: 774 CATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAV 953
C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K +
Sbjct: 48 CQRVSQEEVKKWAESLENLIHHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSKL 107
Query: 954 DEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPR 1133
KA+ IY +++S+ + KEV+LDS RE ++ M +P+ FD+AQ +I+ LM +DSY R
Sbjct: 108 SPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLQPTITCFDEAQKKIFNLMEKDSYRR 167
Query: 1134 FLTSPAYRALLLQGGSPSSTEA 1199
FL S Y L +PSS A
Sbjct: 168 FLKSRFYLDLT----NPSSCGA 185
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,650,015
Number of extensions: 1282212
Number of successful extensions: 8530
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 8201
Number of HSP's successfully gapped: 29
Length of query: 468
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 363
Effective length of database: 12,463,779
Effective search space: 4524351777
Effective search space used: 4524351777
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001034556.1| regulator of G-protein signaling 19 [Homo sa... 297 2e-80
Alignment gi|NP_005864.1| regulator of G-protein signaling 19 [Homo sapie... 297 2e-80
Alignment gi|NP_003693.2| regulator of G-protein signaling 20 isoform b [... 209 4e-54
Alignment gi|NP_733466.1| regulator of G-protein signaling 20 isoform a [... 209 4e-54
Alignment gi|NP_036551.3| regulator of G-protein signaling 17 [Homo sapie... 196 6e-50
Alignment gi|NP_203131.1| regulator of G-protein signaling 8 isoform 1 [H... 129 5e-30
Alignment gi|NP_001095920.1| regulator of G-protein signaling 8 isoform 2... 129 5e-30
Alignment gi|NP_001106851.1| regulator of G-protein signaling 4 isoform 3... 122 6e-28
Alignment gi|NP_005604.1| regulator of G-protein signaling 4 isoform 2 [H... 122 6e-28
Alignment gi|NP_001095915.1| regulator of G-protein signaling 4 isoform 1... 122 6e-28
>ref|NP_001034556.1| regulator of G-protein signaling 19 [Homo sapiens].
Length = 217
Score = 297 bits (760), Expect = 2e-80
Identities = 155/217 (71%), Positives = 160/217 (73%)
Frame = +3
Query: 549 MPTPHEAEKQHRGPEEADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 728
MPTPHEAEKQ GPEEAD+
Sbjct: 1 MPTPHEAEKQITGPEEADRPPSMSSHDTASPAAPSRNPCCLCWCCCCSCSWNQERRRAWQ 60
Query: 729 XXXXXXPQPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFW 908
QPLPSCEVCATPSPEEVQSWAQSFDKLM SPAGR FRAFLRTEYSEENMLFW
Sbjct: 61 ASRESKLQPLPSCEVCATPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFW 120
Query: 909 LACEELKAEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA 1088
LACEELKAEA++H VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA
Sbjct: 121 LACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA 180
Query: 1089 QLQIYTLMHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
QLQIYTLMHRDSYPRFL+SP YRALLLQG S SS+EA
Sbjct: 181 QLQIYTLMHRDSYPRFLSSPTYRALLLQGPSQSSSEA 217
>ref|NP_005864.1| regulator of G-protein signaling 19 [Homo sapiens].
Length = 217
Score = 297 bits (760), Expect = 2e-80
Identities = 155/217 (71%), Positives = 160/217 (73%)
Frame = +3
Query: 549 MPTPHEAEKQHRGPEEADQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 728
MPTPHEAEKQ GPEEAD+
Sbjct: 1 MPTPHEAEKQITGPEEADRPPSMSSHDTASPAAPSRNPCCLCWCCCCSCSWNQERRRAWQ 60
Query: 729 XXXXXXPQPLPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFW 908
QPLPSCEVCATPSPEEVQSWAQSFDKLM SPAGR FRAFLRTEYSEENMLFW
Sbjct: 61 ASRESKLQPLPSCEVCATPSPEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFW 120
Query: 909 LACEELKAEADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA 1088
LACEELKAEA++H VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA
Sbjct: 121 LACEELKAEANQHVVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDA 180
Query: 1089 QLQIYTLMHRDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
QLQIYTLMHRDSYPRFL+SP YRALLLQG S SS+EA
Sbjct: 181 QLQIYTLMHRDSYPRFLSSPTYRALLLQGPSQSSSEA 217
>ref|NP_003693.2| regulator of G-protein signaling 20 isoform b [Homo sapiens].
Length = 241
Score = 209 bits (533), Expect = 4e-54
Identities = 105/148 (70%), Positives = 121/148 (81%)
Frame = +3
Query: 756 LPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAE 935
LP+ E P+ EEV +WAQSFDKLM +PAGR AFR FLRTE+SEENMLFW+ACEELK E
Sbjct: 95 LPTWEESPAPTLEEVNAWAQSFDKLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKKE 154
Query: 936 ADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMH 1115
A+++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ M EPS H FDDAQLQIYTLMH
Sbjct: 155 ANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTLMH 214
Query: 1116 RDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
RDSYPRF+ S Y+ LLQ S S EA
Sbjct: 215 RDSYPRFMNSAVYKD-LLQSLSEKSIEA 241
>ref|NP_733466.1| regulator of G-protein signaling 20 isoform a [Homo sapiens].
Length = 388
Score = 209 bits (533), Expect = 4e-54
Identities = 105/148 (70%), Positives = 121/148 (81%)
Frame = +3
Query: 756 LPSCEVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAE 935
LP+ E P+ EEV +WAQSFDKLM +PAGR AFR FLRTE+SEENMLFW+ACEELK E
Sbjct: 242 LPTWEESPAPTLEEVNAWAQSFDKLMVTPAGRNAFREFLRTEFSEENMLFWMACEELKKE 301
Query: 936 ADRHAVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMH 1115
A+++ ++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ M EPS H FDDAQLQIYTLMH
Sbjct: 302 ANKNIIEEKARIIYEDYISILSPKEVSLDSRVREVINRNMVEPSQHIFDDAQLQIYTLMH 361
Query: 1116 RDSYPRFLTSPAYRALLLQGGSPSSTEA 1199
RDSYPRF+ S Y+ LLQ S S EA
Sbjct: 362 RDSYPRFMNSAVYKD-LLQSLSEKSIEA 388
>ref|NP_036551.3| regulator of G-protein signaling 17 [Homo sapiens].
Length = 210
Score = 196 bits (497), Expect = 6e-50
Identities = 90/141 (63%), Positives = 114/141 (80%)
Frame = +3
Query: 768 EVCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRH 947
E C P+ EEV SW+Q+FDK+M++PAGR FR FLRTEYSEEN+LFWLACE+LK E ++
Sbjct: 68 EECQNPTAEEVLSWSQNFDKMMKAPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKK 127
Query: 948 AVDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSY 1127
++EKAR+IYEDY+SILSPKEVSLDSRVRE IN+ + +P+ H ++DAQLQIYTLMHRDS+
Sbjct: 128 VIEEKARMIYEDYISILSPKEVSLDSRVREVINRNLLDPNPHMYEDAQLQIYTLMHRDSF 187
Query: 1128 PRFLTSPAYRALLLQGGSPSS 1190
PRFL S Y++ + SS
Sbjct: 188 PRFLNSQIYKSFVESTAGSSS 208
>ref|NP_203131.1| regulator of G-protein signaling 8 isoform 1 [Homo sapiens].
Length = 198
Score = 129 bits (325), Expect = 5e-30
Identities = 64/129 (49%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 64 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 123
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K +QEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 124 HRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 183
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 184 KMYLDLLSQ 192
>ref|NP_001095920.1| regulator of G-protein signaling 8 isoform 2 [Homo sapiens].
Length = 180
Score = 129 bits (325), Expect = 5e-30
Identities = 64/129 (49%), Positives = 84/129 (65%)
Frame = +3
Query: 786 SPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHAVDEKA 965
S EE WA SFD L+ G AFRAFL+TE+SEEN+ FWLACEE K + KA
Sbjct: 46 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKA 105
Query: 966 RLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYPRFLTS 1145
I+E++V + +P+EV++D + RE K +QEPS FD AQ ++++LM +DSYPRFL S
Sbjct: 106 HRIFEEFVDVQAPREVNIDFQTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRS 165
Query: 1146 PAYRALLLQ 1172
Y LL Q
Sbjct: 166 KMYLDLLSQ 174
>ref|NP_001106851.1| regulator of G-protein signaling 4 isoform 3 [Homo sapiens].
Length = 187
Score = 122 bits (307), Expect = 6e-28
Identities = 63/143 (44%), Positives = 91/143 (63%)
Frame = +3
Query: 771 VCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHA 950
+C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K
Sbjct: 29 ICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSK 88
Query: 951 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 1130
+ KA+ IY +++S+ + KEV+LDS RE ++ M EP+ FD+AQ +I+ LM +DSY
Sbjct: 89 LSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYR 148
Query: 1131 RFLTSPAYRALLLQGGSPSSTEA 1199
RFL S Y L+ +PSS A
Sbjct: 149 RFLKSRFYLDLV----NPSSCGA 167
>ref|NP_005604.1| regulator of G-protein signaling 4 isoform 2 [Homo sapiens].
Length = 205
Score = 122 bits (307), Expect = 6e-28
Identities = 63/143 (44%), Positives = 91/143 (63%)
Frame = +3
Query: 771 VCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHA 950
+C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K
Sbjct: 47 ICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSK 106
Query: 951 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 1130
+ KA+ IY +++S+ + KEV+LDS RE ++ M EP+ FD+AQ +I+ LM +DSY
Sbjct: 107 LSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYR 166
Query: 1131 RFLTSPAYRALLLQGGSPSSTEA 1199
RFL S Y L+ +PSS A
Sbjct: 167 RFLKSRFYLDLV----NPSSCGA 185
>ref|NP_001095915.1| regulator of G-protein signaling 4 isoform 1 [Homo sapiens].
Length = 302
Score = 122 bits (307), Expect = 6e-28
Identities = 63/143 (44%), Positives = 91/143 (63%)
Frame = +3
Query: 771 VCATPSPEEVQSWAQSFDKLMRSPAGRGAFRAFLRTEYSEENMLFWLACEELKAEADRHA 950
+C S EEV+ WA+S + L+ G AF+AFL++EYSEEN+ FW++CEE K
Sbjct: 144 ICQRVSQEEVKKWAESLENLISHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKSPSK 203
Query: 951 VDEKARLIYEDYVSILSPKEVSLDSRVREGINKKMQEPSAHTFDDAQLQIYTLMHRDSYP 1130
+ KA+ IY +++S+ + KEV+LDS RE ++ M EP+ FD+AQ +I+ LM +DSY
Sbjct: 204 LSPKAKKIYNEFISVQATKEVNLDSCTREETSRNMLEPTITCFDEAQKKIFNLMEKDSYR 263
Query: 1131 RFLTSPAYRALLLQGGSPSSTEA 1199
RFL S Y L+ +PSS A
Sbjct: 264 RFLKSRFYLDLV----NPSSCGA 282
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,132,663
Number of extensions: 1595494
Number of successful extensions: 10964
Number of sequences better than 1.0e-05: 49
Number of HSP's gapped: 10560
Number of HSP's successfully gapped: 49
Length of query: 468
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 362
Effective length of database: 14,802,980
Effective search space: 5358678760
Effective search space used: 5358678760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008592
(1405 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896188.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 313 1e-82
gb|GL896087.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 254 1e-64
Sscrofa_Chr04 68 1e-08
>gb|GL896188.1| Sus scrofa unplaced genomic scaffold chrU_scaffold553
Length = 18049
Score = 313 bits (158), Expect = 1e-82
Identities = 158/158 (100%)
Strand = Plus / Minus
Query: 304 ccggcccgagccgatcgggggctcctggagccagcctccctccggaacgcgcgggaggac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1911 ccggcccgagccgatcgggggctcctggagccagcctccctccggaacgcgcgggaggac 1852
Query: 364 ctcctgccgtctgacttgagtcctgctgctgcagtgcacgccccttcggcagccagggtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1851 ctcctgccgtctgacttgagtcctgctgctgcagtgcacgccccttcggcagccagggtg 1792
Query: 424 gggcccagagcgaacctggcccctcccgcccccacctc 461
||||||||||||||||||||||||||||||||||||||
Sbjct: 1791 gggcccagagcgaacctggcccctcccgcccccacctc 1754
>gb|GL896087.1| Sus scrofa unplaced genomic scaffold chrU_scaffold462
Length = 1400
Score = 254 bits (128), Expect = 1e-64
Identities = 148/157 (94%)
Strand = Plus / Minus
Query: 1201 aggctgcctcccgggcgcctcccgcaggcacagactcctttcaccagagggcccagcacc 1260
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aggctgcctccggggcgcctcccgcaggcacagactcctttcaccagagggcccagcacc 787
Query: 1261 cgcaggcaggagctcgggcgcggggcggctcagaannnnnnntctccacccaggggacct 1320
||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 786 cgcaggcaggagctcgggcgcggggcggctcagaagcccccctctccacccaggggacct 727
Query: 1321 ggtgccctaaggtcctgccgagaggcaagtggcaggg 1357
||||||||||||||||||||||||||| |||||||||
Sbjct: 726 ggtgccctaaggtcctgccgagaggcaggtggcaggg 690
Score = 172 bits (87), Expect = 3e-40
Identities = 87/87 (100%)
Strand = Plus / Minus
Query: 927 aaggccgaggccgaccggcacgcggtggatgagaaggcgcggctcatctacgaggactac 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1230 aaggccgaggccgaccggcacgcggtggatgagaaggcgcggctcatctacgaggactac 1171
Query: 987 gtgtccatcctgtcccccaaggaggtg 1013
|||||||||||||||||||||||||||
Sbjct: 1170 gtgtccatcctgtcccccaaggaggtg 1144
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 830 gatgcgcagcccggccggccgcggcgccttccgggccttcctgcgcacggagtacagcga 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 gatgcgcagcccggccggccgcggcgccttccgggccttcctgcgcacggagtacagcga 1341
Query: 890 ggagaacatg 899
||||||||||
Sbjct: 1340 ggagaacatg 1331
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1044 aacaagaagatgcaggaaccgtcggcgcacaccttcgacgacgcgcagctgcagatctac 1103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 aacaagaagatgcaggaaccgtcggcgcacaccttcgacgacgcgcagctgcagatctac 952
Query: 1104 acgct 1108
|||||
Sbjct: 951 acgct 947
>Sscrofa_Chr04
|| Length = 143465943
Score = 67.9 bits (34), Expect = 1e-08
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 1069 cgcacaccttcgacgacgcgcagctgcagatctacacgctcatgcaccgggactcctacc 1128
|||||| ||||||||| || ||||| |||||||||||||| |||||| | ||||| ||||
Sbjct: 84214433 cgcacatcttcgacgatgcccagctccagatctacacgctgatgcacagagactcgtacc 84214374
Query: 1129 cgcgcttcct 1138
| ||||||||
Sbjct: 84214373 cccgcttcct 84214364
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,152,416
Number of extensions: 353
Number of successful extensions: 353
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 6
Length of query: 1405
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1384
Effective length of database: 2,808,413,156
Effective search space: 3886843807904
Effective search space used: 3886843807904
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)