Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029485.1| fibrinogen-like protein 1 precursor [Bos tau... 514 e-146
Alignment gi|XP_002707737.1| PREDICTED: microfibrillar-associated protein... 186 3e-47
Alignment gi|NP_001039562.1| fibroleukin precursor [Bos taurus]. 179 4e-45
Alignment gi|NP_001068894.1| angiopoietin-related protein 1 precursor [Bo... 176 4e-44
Alignment gi|NP_776336.1| fibrinogen gamma-B chain precursor [Bos taurus]. 174 8e-44
Alignment gi|NP_001010996.1| ficolin-2 precursor [Bos taurus]. 174 1e-43
Alignment gi|NP_001136389.1| fibrinogen beta chain [Bos taurus]. 171 7e-43
Alignment gi|NP_001103284.1| angiopoietin-related protein 2 [Bos taurus]. 171 1e-42
Alignment gi|NP_001070265.1| angiopoietin-1 precursor [Bos taurus]. 170 1e-42
Alignment gi|NP_001069951.1| angiopoietin-4 precursor [Bos taurus]. 165 5e-41
>ref|NP_001029485.1| fibrinogen-like protein 1 precursor [Bos taurus].
Length = 312
Score = 514 bits (1323), Expect = e-146
Identities = 243/281 (86%), Positives = 254/281 (90%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXXX 285
MAK FSFIL+TTALVM R S ALE +CL+EQARLRAQV+LLETR
Sbjct: 1 MAKMFSFILVTTALVMGRGSSALE-NCLQEQARLRAQVYLLETRVKQQQVKISQLLHEKQ 59
Query: 286 IQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGG 465
+Q LDKGEENSVIDLGGKRQYADCSEIFNDG+KQSGFYKIKPLQSPAEFSVYCDMSDGGG
Sbjct: 60 VQLLDKGEENSVIDLGGKRQYADCSEIFNDGYKQSGFYKIKPLQSPAEFSVYCDMSDGGG 119
Query: 466 WTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADF 645
WTVIQRRSDGSENFNR+W+DYENGFGNFVQKNGEYWLGNRNLH+LTTQGDYTLKIDLADF
Sbjct: 120 WTVIQRRSDGSENFNRDWSDYENGFGNFVQKNGEYWLGNRNLHLLTTQGDYTLKIDLADF 179
Query: 646 EKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDR 825
EKN+RYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSL GNFHPEVQWW SHQRMKFSTWDR
Sbjct: 180 EKNSRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLTGNFHPEVQWWASHQRMKFSTWDR 239
Query: 826 DNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
DNDNY+GNCAKED SGWWFNRCHSANLNG YH GPYTAKTD
Sbjct: 240 DNDNYEGNCAKEDQSGWWFNRCHSANLNGFYHKGPYTAKTD 280
>ref|XP_002707737.1| PREDICTED: microfibrillar-associated protein 4-like [Bos taurus].
Length = 625
Score = 186 bits (471), Expect = 3e-47
Identities = 92/205 (44%), Positives = 118/205 (57%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G ++ G Y + P PA F VYCDM +DGGGWTV QRR DGS NF R W Y
Sbjct: 243 DCLDVLLSGQQEDGVYSVFPTHDPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEAY 302
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
+GFG GE+WLG + +H LTTQ Y L +DL DF+ YA Y +F VG
Sbjct: 303 RDGFGKLT---GEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDP 359
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H MKF+T DRD+D+ + NCA
Sbjct: 360 EEDGYPLTVADYSGTAGDSLL-----------KHSGMKFTTKDRDSDHSENNCAAFYRGA 408
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 409 WWYRNCHTSNLNGQYLRGAHASYAD 433
>ref|NP_001039562.1| fibroleukin precursor [Bos taurus].
Length = 441
Score = 179 bits (453), Expect = 4e-45
Identities = 94/198 (47%), Positives = 116/198 (58%), Gaps = 2/198 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSD-GGGWTVIQRRSDGSENFNRNWN 522
Y DCSE + G + S Y++ P + F V+CDM GGWTV+Q R DGS NF R W
Sbjct: 212 YKDCSEYYTIGKRSSELYRVTPEPRNSSFEVFCDMETMAGGWTVLQARVDGSTNFTRTWQ 271
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN + E+WLGN +H+LT D L+IDL DF YA Y +F V +E
Sbjct: 272 DYKVGFGNLRR---EFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFL 328
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY-KGNCAKEDLSGWW 879
Y LHIG Y+GTAGD+L + H +H F+T DRDND Y GNC SGWW
Sbjct: 329 KYRLHIGNYNGTAGDALRFSKH------YNHDLKFFTTPDRDNDRYPSGNCGLYYSSGWW 382
Query: 880 FNRCHSANLNGLYHSGPY 933
F+ C SANLNG Y+ Y
Sbjct: 383 FDACLSANLNGKYYHQKY 400
>ref|NP_001068894.1| angiopoietin-related protein 1 precursor [Bos taurus].
Length = 491
Score = 176 bits (445), Expect = 4e-44
Identities = 89/201 (44%), Positives = 117/201 (58%), Gaps = 2/201 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
Y DC + G SG Y IKP S ++C+ S D GGWTVIQ+R+DGS NF RNW
Sbjct: 277 YKDCQHAKDAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWE 336
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
+Y+ GFGN +GEYWLG N+++L+ Q +Y L I+L D+ YA+Y +F++ E
Sbjct: 337 NYKKGFGNI---DGEYWLGLENIYLLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESE 393
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS+ W H +F+T DRD D Y GNCA GWW+
Sbjct: 394 FYRLRLGTYQGNAGDSM--------MW---HNGKQFTTLDRDKDMYAGNCAHFHKGGWWY 442
Query: 883 NRCHSANLNGL-YHSGPYTAK 942
N C +NLNG+ Y G Y +K
Sbjct: 443 NACAHSNLNGVWYRGGHYRSK 463
>ref|NP_776336.1| fibrinogen gamma-B chain precursor [Bos taurus].
Length = 444
Score = 174 bits (442), Expect = 8e-44
Identities = 89/208 (42%), Positives = 128/208 (61%), Gaps = 10/208 (4%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ N G K+SG Y I+PL++ +F VYC++ G GWTV Q+R DGS +F +NW Y
Sbjct: 176 DCQDVANKGAKESGLYFIRPLKAK-QFLVYCEIDGSGNGWTVFQKRLDGSLDFKKNWIQY 234
Query: 529 ENGFGNFVQK---NGEYWLGNRNLHVLTTQGD--YTLKIDLADFEKNNRYAQYKNFKVGD 693
+ GFG+ N E+WLGN +H+++TQ Y L+I L D+ A Y +FKV
Sbjct: 235 KEGFGHLSPTGTGNTEFWLGNEKIHLISTQSSIPYVLRIQLEDWNGRTSTADYASFKVTG 294
Query: 694 EKNSYDLHIGEY-SGTAGDSLAG-NFHPEV--QWWGSHQRMKFSTWDRDNDNYKGNCAKE 861
E + Y L + G AGD+ G +F + +++ SH M+FSTWD DND Y GNCA++
Sbjct: 295 ENDKYRLTYAYFIGGDAGDAFDGYDFGDDSSDKFFTSHNGMQFSTWDSDNDKYDGNCAEQ 354
Query: 862 DLSGWWFNRCHSANLNGLYHSGPYTAKT 945
GWW N+CH+ +LNG+Y+ G +KT
Sbjct: 355 VGIGWWMNKCHAGHLNGVYYQGGTYSKT 382
>ref|NP_001010996.1| ficolin-2 precursor [Bos taurus].
Length = 329
Score = 174 bits (440), Expect = 1e-43
Identities = 90/197 (45%), Positives = 119/197 (60%), Gaps = 2/197 (1%)
Frame = +1
Query: 355 CSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDYE 531
C+E+ G SG++ I L +V CDM +DGGGWTV QRR DGS +F R W Y+
Sbjct: 121 CTELLTRGHFLSGWHTIY-LPDCRPLTVLCDMDTDGGGWTVFQRRKDGSVDFFRTWTAYK 179
Query: 532 NGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKNSYD 711
GFG+ + GE+WLGN N+H LT QG L++DL DFE N+R+A+Y++F++ DE Y
Sbjct: 180 QGFGSQL---GEFWLGNDNIHALTAQGTSELRVDLMDFEGNHRFAKYQSFRMADEAEKYK 236
Query: 712 LHIGEY-SGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWFNR 888
L +G + G AGDSL H FST DRDND NCA + WW++
Sbjct: 237 LVLGAFVEGNAGDSLT-----------DHGNHFFSTKDRDNDESPSNCAAQFQGAWWYHS 285
Query: 889 CHSANLNGLYHSGPYTA 939
CHS+NLNG Y GP+T+
Sbjct: 286 CHSSNLNGRYLRGPHTS 302
>ref|NP_001136389.1| fibrinogen beta chain [Bos taurus].
Length = 495
Score = 171 bits (434), Expect = 7e-43
Identities = 94/221 (42%), Positives = 123/221 (55%), Gaps = 19/221 (8%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
+C EI +G + S Y I+P S + VYCDM ++ GGWTVIQ R DGS +F R W+ Y
Sbjct: 244 ECEEIIRNGGETSEMYLIQPEDSSKPYRVYCDMKTEKGGWTVIQNRQDGSVDFGRKWDPY 303
Query: 529 ENGFGNFVQKN---------GEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNF 681
+ GFGN GEYWLGN + LT G L I++ D++ + A Y+ F
Sbjct: 304 KQGFGNIATNAEGKKYCGVPGEYWLGNDRISQLTNMGPTKLLIEMEDWKGDKVTALYEGF 363
Query: 682 KVGDEKNSYDLHIGEYSGTAGDSL---AGNFHPEVQWWGSHQRMKFSTWDRDNDNYK--- 843
V +E N Y L + +Y GTAG++L A E + H M FST+DRDND +K
Sbjct: 364 TVQNEANKYQLSVSKYKGTAGNALIEGASQLVGENRTMTIHNSMFFSTYDRDNDGWKTTD 423
Query: 844 --GNCAKEDLSGWWFNRCHSANLNGLYH-SGPYTAKTDQWD 957
C+KED GWW+NRCH+AN NG Y+ G YT WD
Sbjct: 424 PRKQCSKEDGGGWWYNRCHAANPNGRYYWGGAYT-----WD 459
>ref|NP_001103284.1| angiopoietin-related protein 2 [Bos taurus].
Length = 493
Score = 171 bits (432), Expect = 1e-42
Identities = 84/195 (43%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
+ DC + DG S Y +KP + V+CD D GGWTVIQRR DGS NF RNW
Sbjct: 275 WRDCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFRNWE 334
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
Y+ GFGN +GEYWLG N++ LT QG+Y L + + D+ +A+Y +F++ E
Sbjct: 335 TYKQGFGNI---DGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS W H +F+T DRD+D Y GNCA GWW+
Sbjct: 392 YYKLRLGRYHGNAGDSFT--------W---HNGKQFTTLDRDHDVYTGNCAHYQKGGWWY 440
Query: 883 NRCHSANLNGLYHSG 927
N C +NLNG+++ G
Sbjct: 441 NACAHSNLNGVWYRG 455
>ref|NP_001070265.1| angiopoietin-1 precursor [Bos taurus].
Length = 497
Score = 170 bits (431), Expect = 1e-42
Identities = 85/203 (41%), Positives = 121/203 (59%), Gaps = 5/203 (2%)
Frame = +1
Query: 331 GGKRQ----YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDG 495
GGK++ + DC++++ GF +SG Y I P V+C+M +GGGWTVIQ R DG
Sbjct: 273 GGKKEEEKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTVIQHREDG 332
Query: 496 SENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYK 675
S +F R W +Y+ GFGN +GEYWLGN + +T+Q YTL+I+L D+E N Y+QY
Sbjct: 333 SLDFQRGWKEYKMGFGN---PSGEYWLGNEFIFAITSQRQYTLRIELLDWEGNRAYSQYD 389
Query: 676 NFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCA 855
F +G+EK +Y L++ ++GTAG + H FST D DNDN CA
Sbjct: 390 RFHIGNEKQNYRLYLKGHTGTAGKQSSLILH----------GADFSTKDADNDNCMCKCA 439
Query: 856 KEDLSGWWFNRCHSANLNGLYHS 924
GWWF+ C +NLNG++++
Sbjct: 440 LMLTGGWWFDACGPSNLNGMFYT 462
>ref|NP_001069951.1| angiopoietin-4 precursor [Bos taurus].
Length = 498
Score = 165 bits (418), Expect = 5e-41
Identities = 87/195 (44%), Positives = 114/195 (58%), Gaps = 3/195 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWN 522
+ DC+EI G SG Y I V+CDM + GGGWT+IQRR +GS NF RNW
Sbjct: 283 FQDCAEIQRFGANASGIYTIHVANVTEPRKVFCDMEASGGGWTLIQRRENGSVNFQRNWK 342
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN GE+WLGN +H LT++ Y+L+++L D+E N YAQY++F++G E
Sbjct: 343 DYKQGFGN---PAGEHWLGNEVVHQLTSRATYSLRVELQDWEGNEAYAQYEHFQLGSEAQ 399
Query: 703 SYDLHIGEYSGTAG--DSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGW 876
Y L + YSG+AG SL Q FST D DNDN CA+ GW
Sbjct: 400 LYRLSLSGYSGSAGRQSSLV------------LQGTNFSTRDADNDNCLCKCAQMLSGGW 447
Query: 877 WFNRCHSANLNGLYH 921
WF+ C +NLNG+Y+
Sbjct: 448 WFDACGLSNLNGIYY 462
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,562,860
Number of extensions: 824415
Number of successful extensions: 2126
Number of sequences better than 1.0e-05: 25
Number of HSP's gapped: 2036
Number of HSP's successfully gapped: 25
Length of query: 319
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 217
Effective length of database: 14,306,398
Effective search space: 3104488366
Effective search space used: 3104488366
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532831.2| PREDICTED: similar to Fibrinogen-like protein 1... 501 e-142
Alignment gi|XP_867873.1| PREDICTED: similar to fibrinogen, gamma chain i... 191 7e-49
Alignment gi|XP_853752.1| PREDICTED: similar to Fibrinogen gamma chain pr... 191 7e-49
Alignment gi|XP_532698.2| PREDICTED: similar to fibrinogen, gamma chain i... 191 7e-49
Alignment gi|XP_548412.2| PREDICTED: similar to fibrinogen C domain conta... 188 6e-48
Alignment gi|XP_533109.2| PREDICTED: similar to Fibroleukin precursor (Fi... 178 6e-45
Alignment gi|XP_532697.2| PREDICTED: similar to Fibrinogen alpha chain pr... 176 2e-44
Alignment gi|XP_860919.1| PREDICTED: similar to angiopoietin-like 1 precu... 174 1e-43
Alignment gi|XP_860886.1| PREDICTED: similar to angiopoietin-like 1 precu... 174 1e-43
Alignment gi|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain pre... 172 3e-43
>ref|XP_532831.2| PREDICTED: similar to Fibrinogen-like protein 1 precursor
(Hepatocyte-derived fibrinogen-related protein 1)
(HFREP-1) (Hepassocin) (HP-041) [Canis familiaris].
Length = 389
Score = 501 bits (1289), Expect = e-142
Identities = 235/287 (81%), Positives = 257/287 (89%)
Frame = +1
Query: 88 VPSMGKMAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXX 267
+ S+ ++ K FSFIL+TT LV+ RESWALE +CL+EQARLRAQVHLLETR
Sbjct: 72 IVSVREVLKMFSFILVTTILVIGRESWALE-NCLQEQARLRAQVHLLETRVKQQQVKITR 130
Query: 268 XXXXXXIQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCD 447
IQFLDKGEEN+VIDLGGKRQYADCSEIFNDG+K+SGFYKIKPLQSPA FSVYCD
Sbjct: 131 LLHEKEIQFLDKGEENNVIDLGGKRQYADCSEIFNDGYKRSGFYKIKPLQSPAIFSVYCD 190
Query: 448 MSDGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLK 627
MSDGGGWTVIQRRSDGSENFNR W+DYENGFGNFVQ+NGEYWLGN+NLH+LTTQGDYTLK
Sbjct: 191 MSDGGGWTVIQRRSDGSENFNRGWDDYENGFGNFVQENGEYWLGNKNLHLLTTQGDYTLK 250
Query: 628 IDLADFEKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMK 807
IDLADFEKN+RYAQYK FKVGDEKNSY+L+IGEYSGTAGDSLAGN HPEVQWWGSHQRMK
Sbjct: 251 IDLADFEKNSRYAQYKLFKVGDEKNSYELNIGEYSGTAGDSLAGNLHPEVQWWGSHQRMK 310
Query: 808 FSTWDRDNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
FSTWDRD+DNY+GNCA+ED SGWWFNRCHSANLNG Y+ GPYTAKTD
Sbjct: 311 FSTWDRDHDNYEGNCAEEDQSGWWFNRCHSANLNGFYYPGPYTAKTD 357
>ref|XP_867873.1| PREDICTED: similar to fibrinogen, gamma chain isoform gamma-A
precursor isoform 4 [Canis familiaris].
Length = 444
Score = 191 bits (486), Expect = 7e-49
Identities = 93/206 (45%), Positives = 129/206 (62%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC +I N G K+SG Y IKPL++ +F VYC++ G GWTV+Q+R DGS +F +NW Y
Sbjct: 185 DCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDGSGNGWTVLQKRLDGSLDFKKNWIQY 244
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H+++TQ Y L+I L D+ A Y FKVG E
Sbjct: 245 KEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEA 304
Query: 700 NSYDLHIGEY-SGTAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y + Y G AGD+ G P +++ SH M+FSTWD DND Y+GNCA++D
Sbjct: 305 DKYRMTYAYYIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKYEGNCAEQDG 364
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+Y+ G +KT
Sbjct: 365 SGWWMNKCHAGHLNGVYYQGGVYSKT 390
>ref|XP_853752.1| PREDICTED: similar to Fibrinogen gamma chain precursor isoform 2
[Canis familiaris].
Length = 445
Score = 191 bits (486), Expect = 7e-49
Identities = 93/206 (45%), Positives = 129/206 (62%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC +I N G K+SG Y IKPL++ +F VYC++ G GWTV+Q+R DGS +F +NW Y
Sbjct: 178 DCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDGSGNGWTVLQKRLDGSLDFKKNWIQY 237
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H+++TQ Y L+I L D+ A Y FKVG E
Sbjct: 238 KEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEA 297
Query: 700 NSYDLHIGEY-SGTAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y + Y G AGD+ G P +++ SH M+FSTWD DND Y+GNCA++D
Sbjct: 298 DKYRMTYAYYIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKYEGNCAEQDG 357
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+Y+ G +KT
Sbjct: 358 SGWWMNKCHAGHLNGVYYQGGVYSKT 383
>ref|XP_532698.2| PREDICTED: similar to fibrinogen, gamma chain isoform gamma-A
precursor isoform 1 [Canis familiaris].
Length = 437
Score = 191 bits (486), Expect = 7e-49
Identities = 93/206 (45%), Positives = 129/206 (62%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC +I N G K+SG Y IKPL++ +F VYC++ G GWTV+Q+R DGS +F +NW Y
Sbjct: 178 DCQDIANKGAKESGLYFIKPLKAKQQFLVYCEIDGSGNGWTVLQKRLDGSLDFKKNWIQY 237
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H+++TQ Y L+I L D+ A Y FKVG E
Sbjct: 238 KEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRIQLEDWNGRTSTADYAMFKVGPEA 297
Query: 700 NSYDLHIGEY-SGTAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y + Y G AGD+ G P +++ SH M+FSTWD DND Y+GNCA++D
Sbjct: 298 DKYRMTYAYYIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKYEGNCAEQDG 357
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+Y+ G +KT
Sbjct: 358 SGWWMNKCHAGHLNGVYYQGGVYSKT 383
>ref|XP_548412.2| PREDICTED: similar to fibrinogen C domain containing 1 [Canis
familiaris].
Length = 461
Score = 188 bits (478), Expect = 6e-48
Identities = 94/205 (45%), Positives = 120/205 (58%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G ++ G Y + P PA F VYCDM +DGGGWTV QRR DGS NF R W Y
Sbjct: 243 DCLDVLLSGQQEDGIYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEAY 302
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
+GFG GE+WLG R LH LTTQ Y L +DL DF+ + YA+Y +F VG
Sbjct: 303 RDGFGKLT---GEHWLGLRRLHALTTQATYELHVDLEDFDNSTAYARYGSFGVGLFSVDP 359
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H MKF+T DRD+D+ + NCA
Sbjct: 360 EEDGYPLTVADYSGTAGDSLL-----------KHSGMKFTTRDRDSDHSENNCAAFYRGA 408
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 409 WWYRNCHTSNLNGQYLRGAHASYAD 433
>ref|XP_533109.2| PREDICTED: similar to Fibroleukin precursor (Fibrinogen-like
protein 2) (pT49) [Canis familiaris].
Length = 441
Score = 178 bits (452), Expect = 6e-45
Identities = 94/198 (47%), Positives = 116/198 (58%), Gaps = 2/198 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSD-GGGWTVIQRRSDGSENFNRNWN 522
Y DCS+ + G + S Y++ P + F V+CDM GGGWTV+Q R DGS NF R W
Sbjct: 212 YKDCSDYYTIGKRSSETYRVTPDPKNSSFEVFCDMETMGGGWTVLQARLDGSTNFTRTWQ 271
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN + E+WLGN +H+LT D L+IDL DF YA Y F V +E
Sbjct: 272 DYKVGFGNLRR---EFWLGNDKIHLLTKSKDMILRIDLEDFNGVKLYALYDQFYVANEFL 328
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY-KGNCAKEDLSGWW 879
Y LHIG Y+GTAGD+L + H +H F+T DRDND Y GNC SGWW
Sbjct: 329 KYRLHIGNYNGTAGDALHFSKH------YNHDLKFFTTPDRDNDRYPSGNCGLYYSSGWW 382
Query: 880 FNRCHSANLNGLYHSGPY 933
F+ C SANLNG Y+ Y
Sbjct: 383 FDACLSANLNGRYYHQKY 400
>ref|XP_532697.2| PREDICTED: similar to Fibrinogen alpha chain precursor [Canis
familiaris].
Length = 892
Score = 176 bits (447), Expect = 2e-44
Identities = 90/200 (45%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Frame = +1
Query: 340 RQYADCSEIF--NDGFKQSGFYKIKPLQSPAEFSVYCDMSDG-GGWTVIQRRSDGSENFN 510
R DC ++ + QSG + IK S FSVYCD GGW +IQ+R DGS NFN
Sbjct: 653 RPARDCDDVLQTHPSGAQSGIFNIKLPGSSKLFSVYCDQETSLGGWLLIQQRMDGSLNFN 712
Query: 511 RNWNDYENGFGNFVQKN-GEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKV 687
R W DY+ GFG+ K GE+WLGN +LH+LT + L+++L D+ N YA+Y + +V
Sbjct: 713 RTWQDYKRGFGSLDDKGEGEFWLGNEHLHLLTLRAS-VLRVELEDWAGNQAYAEY-HLRV 770
Query: 688 GDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
G E Y L + Y GTAGD+L E + SH M+FST+DRD D ++ NCA+
Sbjct: 771 GSEAEGYALQVSSYEGTAGDALVEGSAEEGTEYTSHAGMQFSTYDRDADQWEENCAEVYG 830
Query: 868 SGWWFNRCHSANLNGLYHSG 927
GWW+N C +ANLNG+Y+ G
Sbjct: 831 GGWWYNSCQAANLNGIYYPG 850
>ref|XP_860919.1| PREDICTED: similar to angiopoietin-like 1 precursor isoform 4
[Canis familiaris].
Length = 495
Score = 174 bits (440), Expect = 1e-43
Identities = 90/217 (41%), Positives = 121/217 (55%), Gaps = 2/217 (0%)
Frame = +1
Query: 298 DKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTV 474
D G + + G + DC G SG Y IKP S ++C+ S D GGWTV
Sbjct: 265 DLGTSPTKRNSGNHGPFKDCQHAKEAGHSVSGIYMIKPENSNGPIQLWCENSLDPGGWTV 324
Query: 475 IQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKN 654
IQ+R+DGS NF RNW +Y+ GFGN +GEYWLG N+++L+ Q +Y L I+L D+
Sbjct: 325 IQKRTDGSVNFFRNWENYKKGFGNI---DGEYWLGLENIYMLSNQDNYKLLIELEDWSDK 381
Query: 655 NRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDND 834
YA+Y +F++ E + L +G Y G AGDS+ W H +F+T DRD D
Sbjct: 382 KVYAEYSSFRLEPESEFFRLRLGTYQGNAGDSM--------MW---HNGKQFTTLDRDKD 430
Query: 835 NYKGNCAKEDLSGWWFNRCHSANLNGL-YHSGPYTAK 942
Y GNCA GWW+N C +NLNG+ Y G Y +K
Sbjct: 431 MYAGNCAHFHKGGWWYNACAHSNLNGVWYRGGHYRSK 467
>ref|XP_860886.1| PREDICTED: similar to angiopoietin-like 1 precursor isoform 3
[Canis familiaris].
Length = 494
Score = 174 bits (440), Expect = 1e-43
Identities = 88/203 (43%), Positives = 117/203 (57%), Gaps = 2/203 (0%)
Frame = +1
Query: 340 RQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRN 516
R + DC G SG Y IKP S ++C+ S D GGWTVIQ+R+DGS NF RN
Sbjct: 278 RPFKDCQHAKEAGHSVSGIYMIKPENSNGPIQLWCENSLDPGGWTVIQKRTDGSVNFFRN 337
Query: 517 WNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDE 696
W +Y+ GFGN +GEYWLG N+++L+ Q +Y L I+L D+ YA+Y +F++ E
Sbjct: 338 WENYKKGFGNI---DGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPE 394
Query: 697 KNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGW 876
+ L +G Y G AGDS+ W H +F+T DRD D Y GNCA GW
Sbjct: 395 SEFFRLRLGTYQGNAGDSM--------MW---HNGKQFTTLDRDKDMYAGNCAHFHKGGW 443
Query: 877 WFNRCHSANLNGL-YHSGPYTAK 942
W+N C +NLNG+ Y G Y +K
Sbjct: 444 WYNACAHSNLNGVWYRGGHYRSK 466
>ref|XP_853738.1| PREDICTED: similar to Fibrinogen beta chain precursor isoform 2
[Canis familiaris].
Length = 488
Score = 172 bits (437), Expect = 3e-43
Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 18/220 (8%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
+C EI +G + S Y I+P S + VYCDM+ D GGWTVIQ R DGS +F R W+ Y
Sbjct: 237 ECEEIIRNGGETSEMYLIQPHSSITPYRVYCDMTTDSGGWTVIQNRQDGSVDFGRTWDPY 296
Query: 529 ENGFGNFVQKN---------GEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNF 681
+ GFGN GEYWLGN + LT G L I++ D++ + A Y F
Sbjct: 297 KQGFGNIATSADGKKYCGLPGEYWLGNDKISQLTNMGPTELLIEMEDWKGDKVKALYGGF 356
Query: 682 KVGDEKNSYDLHIGEYSGTAGDSL---AGNFHPEVQWWGSHQRMKFSTWDRDNDNY---- 840
+ +E N Y L + +Y GTAG++L A E Q H M FST+DRDND +
Sbjct: 357 TMQNEANKYQLSVSKYKGTAGNALIEGASQLFGENQTMTIHNGMYFSTYDRDNDGWITTD 416
Query: 841 -KGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTDQWD 957
K CA+ED GWW+NRCH+AN NG Y+ G + + WD
Sbjct: 417 PKKQCAREDGGGWWYNRCHAANPNGRYYWGGHYS----WD 452
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,058,446
Number of extensions: 849062
Number of successful extensions: 2291
Number of sequences better than 1.0e-05: 34
Number of HSP's gapped: 2172
Number of HSP's successfully gapped: 34
Length of query: 319
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 216
Effective length of database: 15,440,896
Effective search space: 3335233536
Effective search space used: 3335233536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134246.2| PREDICTED: fibrinogen-like protein 1-like [S... 438 e-123
Alignment gi|XP_003361238.1| PREDICTED: fibrinogen gamma chain-like [Sus ... 188 4e-48
Alignment gi|XP_003129181.2| PREDICTED: fibrinogen gamma chain [Sus scrof... 188 4e-48
Alignment gi|XP_003122287.1| PREDICTED: fibrinogen C domain-containing pr... 188 4e-48
Alignment gi|NP_001005152.1| fibroleukin [Sus scrofa]. 184 6e-47
Alignment gi|NP_999325.1| ficolin-1 precursor [Sus scrofa]. 177 1e-44
Alignment gi|XP_003357038.1| PREDICTED: fibrinogen alpha chain-like [Sus ... 177 1e-44
Alignment gi|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa]. 172 2e-43
Alignment gi|NP_001103416.1| angiopoietin-related protein 2 [Sus scrofa]. 171 7e-43
Alignment gi|NP_999124.1| angiopoietin-1 precursor [Sus scrofa]. 170 1e-42
>ref|XP_003134246.2| PREDICTED: fibrinogen-like protein 1-like [Sus scrofa].
Length = 356
Score = 438 bits (1127), Expect = e-123
Identities = 198/202 (98%), Positives = 200/202 (99%)
Frame = +1
Query: 343 QYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRNWN 522
Q +CSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRNWN
Sbjct: 123 QDQNCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGGWTVIQRRSDGSENFNRNWN 182
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN
Sbjct: 183 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 242
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY+GNCAKEDLSGWWF
Sbjct: 243 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYEGNCAKEDLSGWWF 302
Query: 883 NRCHSANLNGLYHSGPYTAKTD 948
NRCHSANLNGLYHSGPYTAKTD
Sbjct: 303 NRCHSANLNGLYHSGPYTAKTD 324
Score = 54.3 bits (129), Expect = 1e-07
Identities = 25/45 (55%), Positives = 26/45 (57%)
Frame = +3
Query: 90 SFNGKNGKDVQFHPPHHCSSNXXXXXXXXXXXXXXXXTAQSPGAP 224
SFNGKNGKDVQFHPPHHCSSN T Q P +P
Sbjct: 29 SFNGKNGKDVQFHPPHHCSSNGQGKLEERAQLPYPTRTLQLPVSP 73
>ref|XP_003361238.1| PREDICTED: fibrinogen gamma chain-like [Sus scrofa].
Length = 438
Score = 188 bits (477), Expect = 4e-48
Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC EI N G ++SG Y IKPL++P +F VYC++ G GWTV Q+R DGSE+F +NW Y
Sbjct: 179 DCQEIANKGARESGLYFIKPLKAPKKFLVYCEIDGSGNGWTVFQKRVDGSEDFKKNWIQY 238
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H++TTQ Y L++ L D+ A Y F+VG E
Sbjct: 239 KEGFGHLSPTGTTEFWLGNEKIHLITTQSAIPYVLRVQLEDWSGKTSTADYSTFRVGPES 298
Query: 700 NSYDLHIGEY-SGTAGDSLAG-NFHPEV--QWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y + + G AGD+ G +F + ++ SH M+FSTWD DND + GNCA++D
Sbjct: 299 DKYRMTYAYFLGGDAGDAFDGFDFGDDSSDKFLTSHNGMQFSTWDNDNDKFDGNCAEQDG 358
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+Y+ G +K+
Sbjct: 359 SGWWMNKCHAGHLNGVYYPGGTYSKS 384
>ref|XP_003129181.2| PREDICTED: fibrinogen gamma chain [Sus scrofa].
Length = 438
Score = 188 bits (477), Expect = 4e-48
Identities = 91/206 (44%), Positives = 130/206 (63%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC EI N G ++SG Y IKPL++P +F VYC++ G GWTV Q+R DGSE+F +NW Y
Sbjct: 179 DCQEIANKGARESGLYFIKPLKAPKKFLVYCEIDGSGNGWTVFQKRVDGSEDFKKNWIQY 238
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H++TTQ Y L++ L D+ A Y F+VG E
Sbjct: 239 KEGFGHLSPTGTTEFWLGNEKIHLITTQSAIPYVLRVQLEDWSGKTSTADYSTFRVGPES 298
Query: 700 NSYDLHIGEY-SGTAGDSLAG-NFHPEV--QWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y + + G AGD+ G +F + ++ SH M+FSTWD DND + GNCA++D
Sbjct: 299 DKYRMTYAYFLGGDAGDAFDGFDFGDDSSDKFLTSHNGMQFSTWDNDNDKFDGNCAEQDG 358
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+Y+ G +K+
Sbjct: 359 SGWWMNKCHAGHLNGVYYPGGTYSKS 384
>ref|XP_003122287.1| PREDICTED: fibrinogen C domain-containing protein 1 [Sus scrofa].
Length = 461
Score = 188 bits (477), Expect = 4e-48
Identities = 93/205 (45%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G ++ G Y + P PA F VYCDMS DGGGWTV QRR DGS NF R W Y
Sbjct: 243 DCLDVLLSGQQEDGVYSVFPTHDPAGFQVYCDMSTDGGGWTVFQRREDGSVNFFRGWEAY 302
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
+GFG GE+WLG + LH LTTQ Y L +DL DF+ YA Y++F VG
Sbjct: 303 RDGFGKLT---GEHWLGLKRLHALTTQAAYELHVDLEDFDNGTAYAHYRSFGVGLFSVDP 359
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H M+F+T DRD+D+ + NCA
Sbjct: 360 EEDGYPLTVADYSGTAGDSLL-----------KHSGMRFTTKDRDSDHSENNCAAFYRGA 408
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 409 WWYRNCHTSNLNGQYLRGAHASYAD 433
>ref|NP_001005152.1| fibroleukin [Sus scrofa].
Length = 442
Score = 184 bits (467), Expect = 6e-47
Identities = 96/198 (48%), Positives = 118/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSD-GGGWTVIQRRSDGSENFNRNWN 522
Y DCSE + G + S Y++ P + F VYCDM GGGWTV+Q R DGS NF R W
Sbjct: 213 YKDCSEYYTIGKRSSEIYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWR 272
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN + E+WLGN +H+LT D L+IDL DF YA Y +F V +E
Sbjct: 273 DYKVGFGNLRR---EFWLGNDKIHLLTKSKDMILRIDLEDFNGIKLYALYDHFYVANEFL 329
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY-KGNCAKEDLSGWW 879
Y LHIG Y+GTAGD+L + H +H F+T DRDND Y GNC SGWW
Sbjct: 330 KYRLHIGNYNGTAGDALRFSKH------YNHDMKYFTTPDRDNDRYPSGNCGLYYSSGWW 383
Query: 880 FNRCHSANLNGLYHSGPY 933
F+ C SANLNG Y++ Y
Sbjct: 384 FDACLSANLNGKYYNQKY 401
>ref|NP_999325.1| ficolin-1 precursor [Sus scrofa].
Length = 326
Score = 177 bits (448), Expect = 1e-44
Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 9/223 (4%)
Frame = +1
Query: 298 DKGEENSVIDLGGKRQYADCS-------EIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-S 453
D+GE+ + + G Q C+ E+ G SG++ I L +V CDM +
Sbjct: 92 DRGEKGARGEKGEPGQLQSCATGPRTCKELLTRGHFLSGWHTIY-LPDCQPLTVLCDMDT 150
Query: 454 DGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKID 633
DGGGWTV QRRSDGS +F R+W Y+ GFG+ + GE+WLGN ++H LT QG L++D
Sbjct: 151 DGGGWTVFQRRSDGSVDFYRDWAAYKRGFGSQL---GEFWLGNDHIHALTAQGTSELRVD 207
Query: 634 LADFEKNNRYAQYKNFKVGDEKNSYDLHIGEY-SGTAGDSLAGNFHPEVQWWGSHQRMKF 810
L DFE N+++A+Y++F+V E Y L +G + G AGDSL+ SH+ F
Sbjct: 208 LVDFEGNHQFAKYRSFQVAGEAEKYKLVLGGFLEGNAGDSLS-----------SHRDQFF 256
Query: 811 STWDRDNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTA 939
ST D+DNDN+ GNCA++ WW+N CHS+NLNG Y G +T+
Sbjct: 257 STKDQDNDNHSGNCAEQYHGAWWYNACHSSNLNGRYLRGLHTS 299
>ref|XP_003357038.1| PREDICTED: fibrinogen alpha chain-like [Sus scrofa].
Length = 842
Score = 177 bits (448), Expect = 1e-44
Identities = 96/224 (42%), Positives = 132/224 (58%), Gaps = 14/224 (6%)
Frame = +1
Query: 298 DKGEENSVIDLGG----KRQYA------DCSEIF--NDGFKQSGFYKIKPLQSPAEFSVY 441
D+ + +DL G KR Y DC + + QSG + I+ S FSVY
Sbjct: 579 DEADSEEGLDLKGGHVIKRVYTRTRPARDCGDALQTHPSGAQSGIFNIELPGSSKIFSVY 638
Query: 442 CDM-SDGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKN-GEYWLGNRNLHVLTTQGD 615
CD +D GGW +IQ+R+DGS NFNR W DY+ GFG+ K GE+WLGN LH+LT +G
Sbjct: 639 CDQETDLGGWLLIQQRTDGSLNFNRTWQDYKRGFGSLNDKGEGEFWLGNEYLHLLTLRGS 698
Query: 616 YTLKIDLADFEKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSH 795
L+++L D+ YA+Y + +VG E Y L + Y GTAGD+L E + SH
Sbjct: 699 -VLRVELEDWAGKGAYAEY-HLRVGSEAEGYALQVSSYKGTAGDALIEGSPEEGSEYTSH 756
Query: 796 QRMKFSTWDRDNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSG 927
M+FST+DRD D ++ NCA+ GWW+N C +ANLNG+Y++G
Sbjct: 757 AGMQFSTFDRDADKWEENCAEVYGGGWWYNNCQAANLNGIYYTG 800
>ref|NP_001103417.1| angiopoietin-related protein 1 [Sus scrofa].
Length = 491
Score = 172 bits (437), Expect = 2e-43
Identities = 85/195 (43%), Positives = 114/195 (58%), Gaps = 1/195 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
+ DC G SG Y IKP S ++C+ S D GGWTVIQ+R+DGS NF RNW
Sbjct: 277 FKDCQHAKEAGHSVSGIYMIKPENSNGPMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWE 336
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
+Y+ GFGN +GEYWLG N+++L+ Q +Y L I+L D+ YA+Y +F++ E
Sbjct: 337 NYKKGFGN---TDGEYWLGLENIYMLSNQDNYKLLIELEDWSDKKVYAEYSSFRLEPESE 393
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS+ W H +F+T DRD D Y GNCA GWW+
Sbjct: 394 FYRLRLGTYQGNAGDSM--------MW---HNGKQFTTLDRDKDMYAGNCAHFHKGGWWY 442
Query: 883 NRCHSANLNGLYHSG 927
N C +NLNG+++ G
Sbjct: 443 NACAHSNLNGVWYRG 457
>ref|NP_001103416.1| angiopoietin-related protein 2 [Sus scrofa].
Length = 493
Score = 171 bits (432), Expect = 7e-43
Identities = 84/195 (43%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
+ DC + DG S Y +KP + V+CD D GGWTVIQRR DGS NF RNW
Sbjct: 275 WRDCLQALEDGHDTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFRNWE 334
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
Y+ GFGN +GEYWLG N++ LT QG+Y L + + D+ +A+Y +F++ E
Sbjct: 335 TYKQGFGNI---DGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS W H +F+T DRD+D Y GNCA GWW+
Sbjct: 392 YYKLRLGRYHGNAGDSFT--------W---HNGKQFTTLDRDHDVYTGNCAHYQKGGWWY 440
Query: 883 NRCHSANLNGLYHSG 927
N C +NLNG+++ G
Sbjct: 441 NACAHSNLNGVWYRG 455
>ref|NP_999124.1| angiopoietin-1 precursor [Sus scrofa].
Length = 498
Score = 170 bits (430), Expect = 1e-42
Identities = 86/210 (40%), Positives = 123/210 (58%), Gaps = 5/210 (2%)
Frame = +1
Query: 310 ENSVIDLGGKRQ----YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTV 474
+ V+ GGK++ + DC++++ GF +SG Y I P V+C+M +GGGWTV
Sbjct: 267 KEGVLLKGGKKEEVKPFRDCADVYQAGFNKSGIYTIYINNMPEPKKVFCNMDLNGGGWTV 326
Query: 475 IQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKN 654
IQ R DGS +F R W +Y+ GFGN +GEYWLGN + +T+Q YTL+ +L D+E N
Sbjct: 327 IQHREDGSLDFQRGWKEYKMGFGN---PSGEYWLGNEFIFAITSQRQYTLRTELMDWEGN 383
Query: 655 NRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDND 834
Y+QY F +G+EK +Y L++ +SGTAG + H FST D DND
Sbjct: 384 RAYSQYDRFHIGNEKQNYRLYLKGHSGTAGKQSSLILH----------GADFSTKDADND 433
Query: 835 NYKGNCAKEDLSGWWFNRCHSANLNGLYHS 924
N CA GWWF+ C +NLNG++++
Sbjct: 434 NCMCKCALMLTGGWWFDACGPSNLNGMFYT 463
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,547,156
Number of extensions: 524895
Number of successful extensions: 1418
Number of sequences better than 1.0e-05: 27
Number of HSP's gapped: 1324
Number of HSP's successfully gapped: 28
Length of query: 319
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 220
Effective length of database: 8,879,129
Effective search space: 1953408380
Effective search space used: 1953408380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663569.2| fibrinogen-like protein 1 precursor [Mus muscul... 467 e-132
Alignment gi|NP_598623.1| fibrinogen gamma chain precursor [Mus musculus]. 186 2e-47
Alignment gi|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus m... 183 2e-46
Alignment gi|NP_032039.2| fibroleukin precursor [Mus musculus]. 180 1e-45
Alignment gi|NP_001104518.1| fibrinogen, alpha polypeptide isoform 1 [Mus... 179 2e-45
Alignment gi|NP_082609.2| angiopoietin-related protein 1 precursor [Mus m... 174 7e-44
Alignment gi|NP_036053.2| angiopoietin-related protein 2 precursor [Mus m... 171 8e-43
Alignment gi|NP_033770.2| angiopoietin-1 precursor [Mus musculus]. 169 3e-42
Alignment gi|NP_032021.1| ficolin-1 precursor [Mus musculus]. 166 2e-41
Alignment gi|NP_034320.1| ficolin-2 precursor [Mus musculus]. 164 7e-41
>ref|NP_663569.2| fibrinogen-like protein 1 precursor [Mus musculus].
Length = 314
Score = 467 bits (1201), Expect = e-132
Identities = 215/282 (76%), Positives = 242/282 (85%), Gaps = 1/282 (0%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALE-EDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXX 282
M K +SF+L+ AL+M RE WALE E+CLREQ RLRAQVH LETR
Sbjct: 1 MGKIYSFVLVAIALMMGREGWALESENCLREQVRLRAQVHQLETRVKQQQTMIAQLLHEK 60
Query: 283 XIQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGG 462
+QFLDKG ENS IDLGGK+QYADCSEI+NDGFKQSGFYKIKPLQS AEFSVYCDMSDGG
Sbjct: 61 EVQFLDKGSENSFIDLGGKKQYADCSEIYNDGFKQSGFYKIKPLQSLAEFSVYCDMSDGG 120
Query: 463 GWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLAD 642
GWTVIQRRSDGSENFNR WNDYENGFGNFVQ NGEYWLGN+N+++LT QGDYTLKIDL D
Sbjct: 121 GWTVIQRRSDGSENFNRGWNDYENGFGNFVQNNGEYWLGNKNINLLTIQGDYTLKIDLTD 180
Query: 643 FEKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWD 822
FEKN+ +AQY++FKVGD+K+ Y+L+IGEYSGTAGDSL+G FHPEVQWW SHQRMKFSTWD
Sbjct: 181 FEKNSSFAQYQSFKVGDKKSFYELNIGEYSGTAGDSLSGTFHPEVQWWASHQRMKFSTWD 240
Query: 823 RDNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
RDNDNY+GNCA+E+ SGWWFNRCHSANLNG+Y+ G Y A+TD
Sbjct: 241 RDNDNYQGNCAEEEQSGWWFNRCHSANLNGVYYRGSYRAETD 282
>ref|NP_598623.1| fibrinogen gamma chain precursor [Mus musculus].
Length = 436
Score = 186 bits (473), Expect = 2e-47
Identities = 90/206 (43%), Positives = 128/206 (62%), Gaps = 8/206 (3%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWNDY 528
DC EI N G K+SG Y I+PL++ +F VYC++ G GWTV+Q+R DGS +F +NW Y
Sbjct: 177 DCQEIANKGAKESGLYFIRPLKAKQQFLVYCEIDGSGNGWTVLQKRIDGSLDFKKNWIQY 236
Query: 529 ENGFGNFVQKNG-EYWLGNRNLHVLTTQGD--YTLKIDLADFEKNNRYAQYKNFKVGDEK 699
+ GFG+ E+WLGN +H+++ Q Y L+I L D+ A Y F+VG E
Sbjct: 237 KEGFGHLSPTGTTEFWLGNEKIHLISMQSTIPYALRIQLKDWNGRTSTADYAMFRVGPES 296
Query: 700 NSYDLHIGEY-SGTAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
+ Y L + G AGD+ G P +++ SH M+FSTWD DND ++GNCA++D
Sbjct: 297 DKYRLTYAYFIGGDAGDAFDGYDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDG 356
Query: 868 SGWWFNRCHSANLNGLYHSGPYTAKT 945
SGWW N+CH+ +LNG+YH G +K+
Sbjct: 357 SGWWMNKCHAGHLNGVYHQGGTYSKS 382
>ref|NP_849218.2| fibrinogen C domain-containing protein 1 [Mus musculus].
Length = 459
Score = 183 bits (464), Expect = 2e-46
Identities = 92/205 (44%), Positives = 116/205 (56%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G + G Y I P PA F VYCDM +DGGGWTV QRR DGS NF R W Y
Sbjct: 241 DCLDVLLSGQQDDGVYSIFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWEAY 300
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
GFG GE+WLG + +H LTTQ Y L +DL DF+ YA Y +F VG
Sbjct: 301 REGFGKLT---GEHWLGLKRIHALTTQAAYELHVDLEDFDNGTAYAHYGSFGVGLFSVDP 357
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H M+F+T DRD+D+ + NCA
Sbjct: 358 EEDGYPLTVADYSGTAGDSLL-----------KHSGMRFTTKDRDSDHSENNCAAFYRGA 406
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 407 WWYRNCHTSNLNGQYLRGAHASYAD 431
>ref|NP_032039.2| fibroleukin precursor [Mus musculus].
Length = 432
Score = 180 bits (457), Expect = 1e-45
Identities = 95/198 (47%), Positives = 117/198 (59%), Gaps = 2/198 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSD-GGGWTVIQRRSDGSENFNRNWN 522
Y DCS+ + G + SG Y++ P + F VYCDM GGGWTV+Q R DGS NF R W
Sbjct: 203 YKDCSDHYVLGRRSSGAYRVTPDHRNSSFEVYCDMETMGGGWTVLQARLDGSTNFTREWK 262
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN + E+WLGN +H+LT + L+IDL DF YA Y F V +E
Sbjct: 263 DYKAGFGNLER---EFWLGNDKIHLLTKSKEMILRIDLEDFNGLTLYALYDQFYVANEFL 319
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY-KGNCAKEDLSGWW 879
Y LHIG Y+GTAGD+L + H +H F+T DRDND Y GNC SGWW
Sbjct: 320 KYRLHIGNYNGTAGDALRFSRH------YNHDLRFFTTPDRDNDRYPSGNCGLYYSSGWW 373
Query: 880 FNRCHSANLNGLYHSGPY 933
F+ C SANLNG Y+ Y
Sbjct: 374 FDSCLSANLNGKYYHQKY 391
>ref|NP_001104518.1| fibrinogen, alpha polypeptide isoform 1 [Mus musculus].
Length = 789
Score = 179 bits (455), Expect = 2e-45
Identities = 91/200 (45%), Positives = 121/200 (60%), Gaps = 4/200 (2%)
Frame = +1
Query: 340 RQYADCSEIFNDGFK--QSGFYKIKPLQSPAEFSVYCDMSDG-GGWTVIQRRSDGSENFN 510
R DC ++ Q+G + IKP S FSVYCD GGW +IQ+R DGS NFN
Sbjct: 550 RPTRDCDDVLQTQTSGAQNGIFSIKPPGSSKVFSVYCDQETSLGGWLLIQQRMDGSLNFN 609
Query: 511 RNWNDYENGFGNFVQKN-GEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKV 687
R W DY+ GFG+ K GE+WLGN LH+LT +G L+++L D+ YA+Y +F+V
Sbjct: 610 RTWQDYKRGFGSLNDKGEGEFWLGNDYLHLLTLRGS-VLRVELEDWAGKEAYAEY-HFRV 667
Query: 688 GDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
G E Y L + Y GTAGD+L E + SH M+FST+DRD D ++ NCA+
Sbjct: 668 GSEAEGYALQVSSYRGTAGDALVQGSVEEGTEYTSHSNMQFSTFDRDADQWEENCAEVYG 727
Query: 868 SGWWFNRCHSANLNGLYHSG 927
GWW+N C +ANLNG+Y+ G
Sbjct: 728 GGWWYNSCQAANLNGIYYPG 747
>ref|NP_082609.2| angiopoietin-related protein 1 precursor [Mus musculus].
Length = 490
Score = 174 bits (442), Expect = 7e-44
Identities = 88/201 (43%), Positives = 118/201 (58%), Gaps = 2/201 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
+ DC + G SG Y IKP S ++C+ S D GGWTVIQ+R+DGS NF RNW
Sbjct: 276 FKDCQQAKEAGHSASGIYMIKPENSNGLMQLWCENSLDPGGWTVIQKRTDGSVNFFRNWE 335
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
+Y+ GFGN +GEYWLG N++ L+ Q +Y L I+L D+ + YA+Y +F++ E +
Sbjct: 336 NYKKGFGNI---DGEYWLGLDNIYKLSNQDNYKLMIELEDWSEKKVYAEYSSFRLEPESD 392
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS+ W H +F+T DRD D Y GNCA GWW+
Sbjct: 393 YYRLRLGTYQGNAGDSM--------MW---HNGKQFTTLDRDKDTYTGNCAHFHKGGWWY 441
Query: 883 NRCHSANLNGL-YHSGPYTAK 942
N C +NLNG+ Y G Y +K
Sbjct: 442 NACAHSNLNGVWYRGGHYRSK 462
>ref|NP_036053.2| angiopoietin-related protein 2 precursor [Mus musculus].
Length = 493
Score = 171 bits (433), Expect = 8e-43
Identities = 84/195 (43%), Positives = 111/195 (56%), Gaps = 1/195 (0%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSENFNRNWN 522
+ DC + DG S Y +KP + V+CD D GGWTVIQRR DGS NF RNW
Sbjct: 275 WRDCLQALEDGHSTSSIYLVKPENTNRLMQVWCDQRHDPGGWTVIQRRLDGSVNFFRNWE 334
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
Y+ GFGN +GEYWLG N++ LT QG+Y L + + D+ +A+Y +F++ E
Sbjct: 335 TYKQGFGNI---DGEYWLGLENIYWLTNQGNYKLLVTMEDWSGRKVFAEYASFRLEPESE 391
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWF 882
Y L +G Y G AGDS W H +F+T DRD+D Y GNCA GWW+
Sbjct: 392 YYKLRLGRYHGNAGDSFT--------W---HNGKQFTTLDRDHDVYTGNCAHYQKGGWWY 440
Query: 883 NRCHSANLNGLYHSG 927
N C +NLNG+++ G
Sbjct: 441 NACAHSNLNGVWYRG 455
>ref|NP_033770.2| angiopoietin-1 precursor [Mus musculus].
Length = 498
Score = 169 bits (428), Expect = 3e-42
Identities = 86/210 (40%), Positives = 123/210 (58%), Gaps = 5/210 (2%)
Frame = +1
Query: 310 ENSVIDLGGKRQ----YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTV 474
+ V+ GGKR+ + DC++++ GF +SG Y I P V+C+M +GGGWTV
Sbjct: 267 KEGVLLKGGKREEEKPFRDCADVYQAGFNKSGIYTIYFNNMPEPKKVFCNMDVNGGGWTV 326
Query: 475 IQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKN 654
IQ R DGS +F R W +Y+ GFGN +GEYWLGN + +T+Q Y L+I+L D+E N
Sbjct: 327 IQHREDGSLDFQRGWKEYKMGFGN---PSGEYWLGNEFIFAITSQRQYMLRIELMDWEGN 383
Query: 655 NRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDND 834
Y+QY F +G+EK +Y L++ ++GTAG + H FST D DND
Sbjct: 384 RAYSQYDRFHIGNEKQNYRLYLKGHTGTAGKQSSLILH----------GADFSTKDADND 433
Query: 835 NYKGNCAKEDLSGWWFNRCHSANLNGLYHS 924
N CA GWWF+ C +NLNG++++
Sbjct: 434 NCMCKCALMLTGGWWFDACGPSNLNGMFYT 463
>ref|NP_032021.1| ficolin-1 precursor [Mus musculus].
Length = 334
Score = 166 bits (421), Expect = 2e-41
Identities = 91/227 (40%), Positives = 124/227 (54%), Gaps = 10/227 (4%)
Frame = +1
Query: 298 DKGEENSVIDLGGK--------RQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS 453
+KG+ + LG K R C ++ G +G+Y I L +V CDM
Sbjct: 99 EKGDTGAAPSLGEKELGDTLCQRGPRSCKDLLTRGIFLTGWYTIH-LPDCRPLTVLCDMD 157
Query: 454 -DGGGWTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKI 630
DGGGWTV QRR DGS +F R+W+ Y+ GFGN E+WLGN LH+LT G+ L++
Sbjct: 158 VDGGGWTVFQRRVDGSIDFFRDWDSYKRGFGNL---GTEFWLGNDYLHLLTANGNQELRV 214
Query: 631 DLADFEKNNRYAQYKNFKVGDEKNSYDLHIGEY-SGTAGDSLAGNFHPEVQWWGSHQRMK 807
DL DF+ YA+Y +F+V +E+ Y L +G++ GTAGDSL H M
Sbjct: 215 DLQDFQGKGSYAKYSSFQVSEEQEKYKLTLGQFLEGTAGDSLT-----------KHNNMS 263
Query: 808 FSTWDRDNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
F+T D+DND NCA WW++ CH +NLNG Y SG + + D
Sbjct: 264 FTTHDQDNDANSMNCAALFHGAWWYHNCHQSNLNGRYLSGSHESYAD 310
>ref|NP_034320.1| ficolin-2 precursor [Mus musculus].
Length = 314
Score = 164 bits (416), Expect = 7e-41
Identities = 85/195 (43%), Positives = 116/195 (59%), Gaps = 2/195 (1%)
Frame = +1
Query: 355 CSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDYE 531
C E+ G +G+Y I L +V CDM +DGGGWTV QRR DGS +F R+W Y+
Sbjct: 106 CKELLTQGHFLTGWYTIY-LPDCRPLTVLCDMDTDGGGWTVFQRRLDGSVDFFRDWTSYK 164
Query: 532 NGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKNSYD 711
GFG+ + GE+WLGN N+H LTTQG L++DL+DFE + +A+Y +F++ E Y
Sbjct: 165 RGFGSQL---GEFWLGNDNIHALTTQGTSELRVDLSDFEGKHDFAKYSSFQIQGEAEKYK 221
Query: 712 LHIGEY-SGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSGWWFNR 888
L +G + G AGDSL H FST D+DND +CA WW+++
Sbjct: 222 LILGNFLGGGAGDSLT-----------PHNNRLFSTKDQDNDGSTSSCAMGYHGAWWYSQ 270
Query: 889 CHSANLNGLYHSGPY 933
CH++NLNGLY GP+
Sbjct: 271 CHTSNLNGLYLRGPH 285
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,482,932
Number of extensions: 721354
Number of successful extensions: 1868
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 1792
Number of HSP's successfully gapped: 22
Length of query: 319
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 218
Effective length of database: 12,583,923
Effective search space: 2743295214
Effective search space used: 2743295214
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_963847.1| fibrinogen-like protein 1 precursor [Homo sapie... 489 e-138
Alignment gi|NP_963846.1| fibrinogen-like protein 1 precursor [Homo sapie... 489 e-138
Alignment gi|NP_671736.2| fibrinogen-like protein 1 precursor [Homo sapie... 489 e-138
Alignment gi|NP_004458.3| fibrinogen-like protein 1 precursor [Homo sapie... 489 e-138
Alignment gi|NP_068656.2| fibrinogen gamma chain isoform gamma-B precurso... 189 4e-48
Alignment gi|NP_000500.2| fibrinogen gamma chain isoform gamma-A precurso... 189 4e-48
Alignment gi|NP_116232.3| fibrinogen C domain-containing protein 1 [Homo ... 185 6e-47
Alignment gi|NP_001138578.1| fibrinogen C domain-containing protein 1 [Ho... 185 6e-47
Alignment gi|NP_006673.1| fibroleukin precursor [Homo sapiens]. 179 4e-45
Alignment gi|NP_000499.1| fibrinogen alpha chain isoform alpha-E prepropr... 178 6e-45
>ref|NP_963847.1| fibrinogen-like protein 1 precursor [Homo sapiens].
Length = 312
Score = 489 bits (1258), Expect = e-138
Identities = 231/281 (82%), Positives = 247/281 (87%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXXX 285
MAK FSFIL+TTAL M RE ALE DC +EQ RLRAQV LLETR
Sbjct: 1 MAKVFSFILVTTALTMGREISALE-DCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENE 59
Query: 286 IQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGG 465
+QFLDKG+EN+VIDLG KRQYADCSEIFNDG+K SGFYKIKPLQSPAEFSVYCDMSDGGG
Sbjct: 60 VQFLDKGDENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGG 119
Query: 466 WTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADF 645
WTVIQRRSDGSENFNR W DYENGFGNFVQK+GEYWLGN+NLH LTTQ DYTLKIDLADF
Sbjct: 120 WTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADF 179
Query: 646 EKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDR 825
EKN+RYAQYKNFKVGDEKN Y+L+IGEYSGTAGDSLAGNFHPEVQWW SHQRMKFSTWDR
Sbjct: 180 EKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDR 239
Query: 826 DNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
D+DNY+GNCA+ED SGWWFNRCHSANLNG+Y+SGPYTAKTD
Sbjct: 240 DHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTD 280
>ref|NP_963846.1| fibrinogen-like protein 1 precursor [Homo sapiens].
Length = 312
Score = 489 bits (1258), Expect = e-138
Identities = 231/281 (82%), Positives = 247/281 (87%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXXX 285
MAK FSFIL+TTAL M RE ALE DC +EQ RLRAQV LLETR
Sbjct: 1 MAKVFSFILVTTALTMGREISALE-DCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENE 59
Query: 286 IQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGG 465
+QFLDKG+EN+VIDLG KRQYADCSEIFNDG+K SGFYKIKPLQSPAEFSVYCDMSDGGG
Sbjct: 60 VQFLDKGDENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGG 119
Query: 466 WTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADF 645
WTVIQRRSDGSENFNR W DYENGFGNFVQK+GEYWLGN+NLH LTTQ DYTLKIDLADF
Sbjct: 120 WTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADF 179
Query: 646 EKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDR 825
EKN+RYAQYKNFKVGDEKN Y+L+IGEYSGTAGDSLAGNFHPEVQWW SHQRMKFSTWDR
Sbjct: 180 EKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDR 239
Query: 826 DNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
D+DNY+GNCA+ED SGWWFNRCHSANLNG+Y+SGPYTAKTD
Sbjct: 240 DHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTD 280
>ref|NP_671736.2| fibrinogen-like protein 1 precursor [Homo sapiens].
Length = 312
Score = 489 bits (1258), Expect = e-138
Identities = 231/281 (82%), Positives = 247/281 (87%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXXX 285
MAK FSFIL+TTAL M RE ALE DC +EQ RLRAQV LLETR
Sbjct: 1 MAKVFSFILVTTALTMGREISALE-DCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENE 59
Query: 286 IQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGG 465
+QFLDKG+EN+VIDLG KRQYADCSEIFNDG+K SGFYKIKPLQSPAEFSVYCDMSDGGG
Sbjct: 60 VQFLDKGDENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGG 119
Query: 466 WTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADF 645
WTVIQRRSDGSENFNR W DYENGFGNFVQK+GEYWLGN+NLH LTTQ DYTLKIDLADF
Sbjct: 120 WTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADF 179
Query: 646 EKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDR 825
EKN+RYAQYKNFKVGDEKN Y+L+IGEYSGTAGDSLAGNFHPEVQWW SHQRMKFSTWDR
Sbjct: 180 EKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDR 239
Query: 826 DNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
D+DNY+GNCA+ED SGWWFNRCHSANLNG+Y+SGPYTAKTD
Sbjct: 240 DHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTD 280
>ref|NP_004458.3| fibrinogen-like protein 1 precursor [Homo sapiens].
Length = 312
Score = 489 bits (1258), Expect = e-138
Identities = 231/281 (82%), Positives = 247/281 (87%)
Frame = +1
Query: 106 MAKTFSFILLTTALVMVRESWALEEDCLREQARLRAQVHLLETRXXXXXXXXXXXXXXXX 285
MAK FSFIL+TTAL M RE ALE DC +EQ RLRAQV LLETR
Sbjct: 1 MAKVFSFILVTTALTMGREISALE-DCAQEQMRLRAQVRLLETRVKQQQVKIKQLLQENE 59
Query: 286 IQFLDKGEENSVIDLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSDGGG 465
+QFLDKG+EN+VIDLG KRQYADCSEIFNDG+K SGFYKIKPLQSPAEFSVYCDMSDGGG
Sbjct: 60 VQFLDKGDENTVIDLGSKRQYADCSEIFNDGYKLSGFYKIKPLQSPAEFSVYCDMSDGGG 119
Query: 466 WTVIQRRSDGSENFNRNWNDYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADF 645
WTVIQRRSDGSENFNR W DYENGFGNFVQK+GEYWLGN+NLH LTTQ DYTLKIDLADF
Sbjct: 120 WTVIQRRSDGSENFNRGWKDYENGFGNFVQKHGEYWLGNKNLHFLTTQEDYTLKIDLADF 179
Query: 646 EKNNRYAQYKNFKVGDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDR 825
EKN+RYAQYKNFKVGDEKN Y+L+IGEYSGTAGDSLAGNFHPEVQWW SHQRMKFSTWDR
Sbjct: 180 EKNSRYAQYKNFKVGDEKNFYELNIGEYSGTAGDSLAGNFHPEVQWWASHQRMKFSTWDR 239
Query: 826 DNDNYKGNCAKEDLSGWWFNRCHSANLNGLYHSGPYTAKTD 948
D+DNY+GNCA+ED SGWWFNRCHSANLNG+Y+SGPYTAKTD
Sbjct: 240 DHDNYEGNCAEEDQSGWWFNRCHSANLNGVYYSGPYTAKTD 280
>ref|NP_068656.2| fibrinogen gamma chain isoform gamma-B precursor [Homo sapiens].
Length = 453
Score = 189 bits (479), Expect = 4e-48
Identities = 93/209 (44%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Frame = +1
Query: 325 DLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSE 501
D+ GK DC +I N G KQSG Y IKPL++ +F VYC++ G GWTV Q+R DGS
Sbjct: 173 DITGK----DCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSV 228
Query: 502 NFNRNWNDYENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQY 672
+F +NW Y+ GFG+ E+WLGN +H+++TQ Y L+++L D+ A Y
Sbjct: 229 DFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADY 288
Query: 673 KNFKVGDEKNSYDLHIGEYSG-TAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNY 840
FKVG E + Y L ++G AGD+ G P +++ SH M+FSTWD DND +
Sbjct: 289 AMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKF 348
Query: 841 KGNCAKEDLSGWWFNRCHSANLNGLYHSG 927
+GNCA++D SGWW N+CH+ +LNG+Y+ G
Sbjct: 349 EGNCAEQDGSGWWMNKCHAGHLNGVYYQG 377
>ref|NP_000500.2| fibrinogen gamma chain isoform gamma-A precursor [Homo sapiens].
Length = 437
Score = 189 bits (479), Expect = 4e-48
Identities = 93/209 (44%), Positives = 131/209 (62%), Gaps = 8/209 (3%)
Frame = +1
Query: 325 DLGGKRQYADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMS-DGGGWTVIQRRSDGSE 501
D+ GK DC +I N G KQSG Y IKPL++ +F VYC++ G GWTV Q+R DGS
Sbjct: 173 DITGK----DCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSV 228
Query: 502 NFNRNWNDYENGFGNFVQKNG-EYWLGNRNLHVLTTQG--DYTLKIDLADFEKNNRYAQY 672
+F +NW Y+ GFG+ E+WLGN +H+++TQ Y L+++L D+ A Y
Sbjct: 229 DFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADY 288
Query: 673 KNFKVGDEKNSYDLHIGEYSG-TAGDSLAG---NFHPEVQWWGSHQRMKFSTWDRDNDNY 840
FKVG E + Y L ++G AGD+ G P +++ SH M+FSTWD DND +
Sbjct: 289 AMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKF 348
Query: 841 KGNCAKEDLSGWWFNRCHSANLNGLYHSG 927
+GNCA++D SGWW N+CH+ +LNG+Y+ G
Sbjct: 349 EGNCAEQDGSGWWMNKCHAGHLNGVYYQG 377
>ref|NP_116232.3| fibrinogen C domain-containing protein 1 [Homo sapiens].
Length = 461
Score = 185 bits (469), Expect = 6e-47
Identities = 92/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G + G Y + P PA F VYCDM +DGGGWTV QRR DGS NF R W+ Y
Sbjct: 243 DCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAY 302
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
+GFG GE+WLG + +H LTTQ Y L +DL DFE YA+Y +F VG
Sbjct: 303 RDGFGRLT---GEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDP 359
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H M+F+T DRD+D+ + NCA
Sbjct: 360 EEDGYPLTVADYSGTAGDSLL-----------KHSGMRFTTKDRDSDHSENNCAAFYRGA 408
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 409 WWYRNCHTSNLNGQYLRGAHASYAD 433
>ref|NP_001138578.1| fibrinogen C domain-containing protein 1 [Homo sapiens].
Length = 461
Score = 185 bits (469), Expect = 6e-47
Identities = 92/205 (44%), Positives = 119/205 (58%), Gaps = 6/205 (2%)
Frame = +1
Query: 352 DCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDM-SDGGGWTVIQRRSDGSENFNRNWNDY 528
DC ++ G + G Y + P PA F VYCDM +DGGGWTV QRR DGS NF R W+ Y
Sbjct: 243 DCLDVLLSGQQDDGVYSVFPTHYPAGFQVYCDMRTDGGGWTVFQRREDGSVNFFRGWDAY 302
Query: 529 ENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVG-----D 693
+GFG GE+WLG + +H LTTQ Y L +DL DFE YA+Y +F VG
Sbjct: 303 RDGFGRLT---GEHWLGLKRIHALTTQAAYELHVDLEDFENGTAYARYGSFGVGLFSVDP 359
Query: 694 EKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDLSG 873
E++ Y L + +YSGTAGDSL H M+F+T DRD+D+ + NCA
Sbjct: 360 EEDGYPLTVADYSGTAGDSLL-----------KHSGMRFTTKDRDSDHSENNCAAFYRGA 408
Query: 874 WWFNRCHSANLNGLYHSGPYTAKTD 948
WW+ CH++NLNG Y G + + D
Sbjct: 409 WWYRNCHTSNLNGQYLRGAHASYAD 433
>ref|NP_006673.1| fibroleukin precursor [Homo sapiens].
Length = 439
Score = 179 bits (453), Expect = 4e-45
Identities = 93/198 (46%), Positives = 116/198 (58%), Gaps = 2/198 (1%)
Frame = +1
Query: 346 YADCSEIFNDGFKQSGFYKIKPLQSPAEFSVYCDMSD-GGGWTVIQRRSDGSENFNRNWN 522
Y DCS+ + G + S Y++ P + F VYCDM GGGWTV+Q R DGS NF R W
Sbjct: 210 YKDCSDYYAIGKRSSETYRVTPDPKNSSFEVYCDMETMGGGWTVLQARLDGSTNFTRTWQ 269
Query: 523 DYENGFGNFVQKNGEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKVGDEKN 702
DY+ GFGN + E+WLGN +H+LT + L+IDL DF YA Y F V +E
Sbjct: 270 DYKAGFGNLRR---EFWLGNDKIHLLTKSKEMILRIDLEDFNGVELYALYDQFYVANEFL 326
Query: 703 SYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNY-KGNCAKEDLSGWW 879
Y LH+G Y+GTAGD+L N H +H F+T D+DND Y GNC SGWW
Sbjct: 327 KYRLHVGNYNGTAGDALRFNKH------YNHDLKFFTTPDKDNDRYPSGNCGLYYSSGWW 380
Query: 880 FNRCHSANLNGLYHSGPY 933
F+ C SANLNG Y+ Y
Sbjct: 381 FDACLSANLNGKYYHQKY 398
>ref|NP_000499.1| fibrinogen alpha chain isoform alpha-E preproprotein [Homo sapiens].
Length = 866
Score = 178 bits (452), Expect = 6e-45
Identities = 91/200 (45%), Positives = 122/200 (61%), Gaps = 4/200 (2%)
Frame = +1
Query: 340 RQYADCSEIF--NDGFKQSGFYKIKPLQSPAEFSVYCDMSDG-GGWTVIQRRSDGSENFN 510
R DC ++ + QSG + IK S FSVYCD GGW +IQ+R DGS NFN
Sbjct: 627 RPVRDCDDVLQTHPSGTQSGIFNIKLPGSSKIFSVYCDQETSLGGWLLIQQRMDGSLNFN 686
Query: 511 RNWNDYENGFGNFVQKN-GEYWLGNRNLHVLTTQGDYTLKIDLADFEKNNRYAQYKNFKV 687
R W DY+ GFG+ + GE+WLGN LH+LT +G L+++L D+ N YA+Y +F+V
Sbjct: 687 RTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGS-VLRVELEDWAGNEAYAEY-HFRV 744
Query: 688 GDEKNSYDLHIGEYSGTAGDSLAGNFHPEVQWWGSHQRMKFSTWDRDNDNYKGNCAKEDL 867
G E Y L + Y GTAGD+L E + SH M+FST+DRD D ++ NCA+
Sbjct: 745 GSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYG 804
Query: 868 SGWWFNRCHSANLNGLYHSG 927
GWW+N C +ANLNG+Y+ G
Sbjct: 805 GGWWYNNCQAANLNGIYYPG 824
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,550,683
Number of extensions: 846710
Number of successful extensions: 2383
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 2260
Number of HSP's successfully gapped: 38
Length of query: 319
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 216
Effective length of database: 14,901,872
Effective search space: 3218804352
Effective search space used: 3218804352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008596
(959 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr17 373 e-100
>Sscrofa_Chr17
|| Length = 69701581
Score = 373 bits (188), Expect = e-100
Identities = 191/192 (99%)
Strand = Plus / Minus
Query: 698 agaattcctatgatttgcatattggggaatattctggaacagctggagactcccttgcag 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6078460 agaattcctatgatttgcatattggggaatattctggaacagctggagactcccttgcag 6078401
Query: 758 ggaattttcatcctgaggtacaatggtggggtagtcaccagagaatgaaattcagcacat 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6078400 ggaattttcatcctgaggtacaatggtggggtagtcaccagagaatgaaattcagcacat 6078341
Query: 818 gggacagagataatgacaactacaaagggaactgtgcgaaagaggatctgtctggctggt 877
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6078340 gggacagagataatgacaactacgaagggaactgtgcgaaagaggatctgtctggctggt 6078281
Query: 878 ggtttaacaggt 889
||||||||||||
Sbjct: 6078280 ggtttaacaggt 6078269
Score = 317 bits (160), Expect = 6e-84
Identities = 163/164 (99%)
Strand = Plus / Minus
Query: 349 gcagattgttcagagattttcaatgatggttttaagcagagtggattttacaaaatcaaa 408
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 6081128 gcagattgttcagagattttcaatgatggtttcaagcagagtggattttacaaaatcaaa 6081069
Query: 409 cctctccagagcccagcagaattctctgtttattgtgacatgtctgatggaggaggatgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081068 cctctccagagcccagcagaattctctgtttattgtgacatgtctgatggaggaggatgg 6081009
Query: 469 actgtaattcagagacgatctgatggcagcgagaattttaacag 512
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6081008 actgtaattcagagacgatctgatggcagcgagaattttaacag 6080965
Score = 174 bits (88), Expect = 6e-41
Identities = 88/88 (100%)
Strand = Plus / Minus
Query: 1 ttctgaatgcagttagaggatctgaggaggcagagtgcctggacctcgcctaggctgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6099322 ttctgaatgcagttagaggatctgaggaggcagagtgcctggacctcgcctaggctgtgt 6099263
Query: 61 ctctgattcatttctgacttcaggcaag 88
||||||||||||||||||||||||||||
Sbjct: 6099262 ctctgattcatttctgacttcaggcaag 6099235
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 87 agttccttcaatgggaaaaatggcaaagacgttcagtttcatcctcctcaccactgctct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6088949 agttccttcaatgggaaaaatggcaaagacgttcagtttcatcctcctcaccactgctct 6088890
Query: 147 agtaatggtcagggaaagctggg 169
|||||||||||||||||||||||
Sbjct: 6088889 agtaatggtcagggaaagctggg 6088867
Score = 159 bits (80), Expect = 3e-36
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 511 agaaattggaatgactatgaaaatggctttggaaattttgtccnnnnnnntggtgaatat 570
||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6080428 agaaattggaatgactatgaaaatggctttggaaattttgtccaaaaaaatggtgaatat 6080369
Query: 571 tggctgggtaatagaaatcttcatgtactgaccacacaagg 611
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 6080368 tggctgggtaatagaaatcttcatgtactgaccacacaagg 6080328
Score = 139 bits (70), Expect = 3e-30
Identities = 84/91 (92%)
Strand = Plus / Minus
Query: 609 aggagactacaccttaaaaattgaccttgcagattttgnnnnnnntaaccgttatgcaca 668
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6078722 aggagactacaccttaaaaattgaccttgcagattttgaaaaaaataaccgttatgcaca 6078663
Query: 669 atataaaaatttcaaagttggagatgaaaag 699
|||||||||||||||||||||||||||||||
Sbjct: 6078662 atataaaaatttcaaagttggagatgaaaag 6078632
Score = 131 bits (66), Expect = 8e-28
Identities = 73/74 (98%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 886 aggtgtcactctgcaaacctgaatggtttataccacagtggcccctacacggctaaaact 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6073794 aggtgtcactctgcaaacctgaatggtttataccacagtggcccctacacggctaaaact 6073735
Query: 946 gaccaatgggattg 959
|| |||||||||||
Sbjct: 6073734 ga-caatgggattg 6073722
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,199,645
Number of extensions: 227
Number of successful extensions: 227
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 7
Length of query: 959
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 938
Effective length of database: 2,808,413,156
Effective search space: 2634291540328
Effective search space used: 2634291540328
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)