Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030514.1| transmembrane protein 14C [Bos taurus]. 179 2e-45
Alignment gi|NP_001029551.1| transmembrane protein 14A [Bos taurus]. 79 4e-15
>ref|NP_001030514.1| transmembrane protein 14C [Bos taurus].
Length = 114
Score = 179 bits (455), Expect = 2e-45
Identities = 90/113 (79%), Positives = 94/113 (83%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
M KDSGPLVPLHW+GFGYAALVASGGIIGYAKAGSVPS YQLSQDP
Sbjct: 1 MPKDSGPLVPLHWLGFGYAALVASGGIIGYAKAGSVPSLAAGLLFGGLAGLGSYQLSQDP 60
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPH 503
+NIW+FLVTSGTLAGIMGMRFY+S KFMPAGLIAGASLLMV KLGIS LSKPH
Sbjct: 61 KNIWLFLVTSGTLAGIMGMRFYNSRKFMPAGLIAGASLLMVVKLGISALSKPH 113
>ref|NP_001029551.1| transmembrane protein 14A [Bos taurus].
Length = 99
Score = 79.3 bits (194), Expect = 4e-15
Identities = 44/96 (45%), Positives = 58/96 (60%)
Frame = +3
Query: 204 IGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRNIWVFLVTSGTL 383
IGFGYAALV G I+GY + G V S Y++S D R++ + L T+ L
Sbjct: 4 IGFGYAALVTFGSILGYKRRGGVLSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLFTAFFL 63
Query: 384 AGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
A IMG+RF S K MPAGL+AG SLLM+ +L + +L
Sbjct: 64 ATIMGVRFKRSKKIMPAGLVAGLSLLMILRLVLLLL 99
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,066,918
Number of extensions: 965349
Number of successful extensions: 2589
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2589
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535885.1| PREDICTED: similar to transmembrane protein 14C... 190 1e-48
Alignment gi|XP_532172.2| PREDICTED: similar to transmembrane protein 14A... 83 4e-16
>ref|XP_535885.1| PREDICTED: similar to transmembrane protein 14C [Canis familiaris].
Length = 114
Score = 190 bits (483), Expect = 1e-48
Identities = 95/113 (84%), Positives = 97/113 (85%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
MQKDSGPLVP+HWIGFGYAALVASGGIIGYAKAGSVPS YQLSQDP
Sbjct: 1 MQKDSGPLVPIHWIGFGYAALVASGGIIGYAKAGSVPSLAAGLFFGSLAGLGAYQLSQDP 60
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPH 503
RNIWVFL TSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL+KPH
Sbjct: 61 RNIWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLNKPH 113
>ref|XP_532172.2| PREDICTED: similar to transmembrane protein 14A [Canis familiaris].
Length = 204
Score = 82.8 bits (203), Expect = 4e-16
Identities = 43/101 (42%), Positives = 62/101 (61%)
Frame = +3
Query: 189 VPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRNIWVFLV 368
+P+ IGFGYAALV G I+GY + G +PS Y++S D R++ + L
Sbjct: 104 LPMDLIGFGYAALVTFGSILGYKRRGGLPSLIAGLFVGFLAGYGAYRVSNDKRDVKLSLF 163
Query: 369 TSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
T+ LA IMG+R+ S K MPAGL+AG SL+M+ +L + +L
Sbjct: 164 TAFFLATIMGVRYKRSKKIMPAGLVAGLSLMMILRLVLLLL 204
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,570,633
Number of extensions: 993540
Number of successful extensions: 2448
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2448
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128224.1| PREDICTED: transmembrane protein 14C-like [S... 196 1e-50
Alignment gi|XP_003133103.1| PREDICTED: transmembrane protein 14C-like [S... 157 6e-39
Alignment gi|XP_003128844.1| PREDICTED: transmembrane protein 14A isoform... 82 3e-16
>ref|XP_003128224.1| PREDICTED: transmembrane protein 14C-like [Sus scrofa].
Length = 114
Score = 196 bits (499), Expect = 1e-50
Identities = 99/114 (86%), Positives = 99/114 (86%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPS YQLSQDP
Sbjct: 1 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSLAAGLLFGGLAGLGAYQLSQDP 60
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPHP 506
RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPHP
Sbjct: 61 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPHP 114
>ref|XP_003133103.1| PREDICTED: transmembrane protein 14C-like [Sus scrofa].
Length = 115
Score = 157 bits (398), Expect = 6e-39
Identities = 83/114 (72%), Positives = 85/114 (74%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
MQKDSGPLVPL WIGFGYAALV S IIGYAKAGSV S Y LSQDP
Sbjct: 1 MQKDSGPLVPLFWIGFGYAALVVSDWIIGYAKAGSVLSLVTALFFSGLAGLGAYWLSQDP 60
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPHP 506
NIWVFL TSGTLAGIM MRFYHSGK MP GL+ GA+ LMVAKLGISVLSKP P
Sbjct: 61 GNIWVFLDTSGTLAGIMRMRFYHSGKCMPVGLVVGANWLMVAKLGISVLSKPRP 114
>ref|XP_003128844.1| PREDICTED: transmembrane protein 14A isoform 1 [Sus scrofa].
Length = 99
Score = 82.4 bits (202), Expect = 3e-16
Identities = 45/96 (46%), Positives = 59/96 (61%)
Frame = +3
Query: 204 IGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRNIWVFLVTSGTL 383
IGFGYAALV G I+GY + G VPS Y++S D R++ + L T+ L
Sbjct: 4 IGFGYAALVTFGSILGYKRRGGVPSLIAGLFVGFLAGYGAYRVSLDKRDVKLSLFTAFFL 63
Query: 384 AGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
A IMG+RF S K MPAGL+AG SLLM+ +L + +L
Sbjct: 64 ATIMGVRFKRSKKIMPAGLVAGLSLLMILRLVLLLL 99
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,211,331
Number of extensions: 620362
Number of successful extensions: 1544
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079663.1| transmembrane protein 14C [Mus musculus]. 180 1e-45
Alignment gi|NP_083674.2| transmembrane protein 14A [Mus musculus]. 82 5e-16
>ref|NP_079663.1| transmembrane protein 14C [Mus musculus].
Length = 114
Score = 180 bits (457), Expect = 1e-45
Identities = 89/114 (78%), Positives = 96/114 (84%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
MQKDSGPL+PLH+ GFGYAALVA+GGIIGYAKAGSVPS YQLSQDP
Sbjct: 1 MQKDSGPLMPLHYFGFGYAALVATGGIIGYAKAGSVPSLAAGLFFGGLAGLGAYQLSQDP 60
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPHP 506
RN+WVFL TSGTLAGIMGMRFY+SGKFMPAGLIAGASLLMVAK+GIS+LS PHP
Sbjct: 61 RNVWVFLATSGTLAGIMGMRFYNSGKFMPAGLIAGASLLMVAKVGISLLSSPHP 114
>ref|NP_083674.2| transmembrane protein 14A [Mus musculus].
Length = 99
Score = 82.4 bits (202), Expect = 5e-16
Identities = 44/96 (45%), Positives = 59/96 (61%)
Frame = +3
Query: 204 IGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRNIWVFLVTSGTL 383
IGFGYAALV G ++GY + G VPS Y++S D R++ V L T+ L
Sbjct: 4 IGFGYAALVTIGSVLGYKRRGGVPSLIAGLSVGLLAGYGAYRVSNDRRDVKVSLFTAFFL 63
Query: 384 AGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
A IMG+RF S K MPAGL+AG SL+M+ +L + +L
Sbjct: 64 ATIMGVRFKRSKKVMPAGLVAGLSLMMILRLVLLLL 99
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,351,227
Number of extensions: 826739
Number of successful extensions: 2315
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2294
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001158730.1| transmembrane protein 14C [Homo sapiens]. 171 7e-43
Alignment gi|NP_057546.1| transmembrane protein 14C [Homo sapiens]. 171 7e-43
Alignment gi|NP_112231.3| transmembrane protein 14B isoform a [Homo sapie... 133 3e-31
Alignment gi|NP_001116700.1| transmembrane protein 14E [Homo sapiens]. 58 2e-19
Alignment gi|NP_001121183.1| transmembrane protein 14B isoform b [Homo sa... 93 4e-19
Alignment gi|NP_054770.1| transmembrane protein 14A [Homo sapiens]. 83 4e-16
>ref|NP_001158730.1| transmembrane protein 14C [Homo sapiens].
Length = 112
Score = 171 bits (434), Expect = 7e-43
Identities = 82/111 (73%), Positives = 91/111 (81%)
Frame = +3
Query: 171 KDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRN 350
+D+G +VPLHW GFGYAALVASGGIIGY KAGSVPS YQLSQDPRN
Sbjct: 2 QDTGSVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRN 61
Query: 351 IWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPH 503
+WVFL TSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAK+G+S+ ++PH
Sbjct: 62 VWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNRPH 112
>ref|NP_057546.1| transmembrane protein 14C [Homo sapiens].
Length = 112
Score = 171 bits (434), Expect = 7e-43
Identities = 82/111 (73%), Positives = 91/111 (81%)
Frame = +3
Query: 171 KDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRN 350
+D+G +VPLHW GFGYAALVASGGIIGY KAGSVPS YQLSQDPRN
Sbjct: 2 QDTGSVVPLHWFGFGYAALVASGGIIGYVKAGSVPSLAAGLLFGSLAGLGAYQLSQDPRN 61
Query: 351 IWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVLSKPH 503
+WVFL TSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAK+G+S+ ++PH
Sbjct: 62 VWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFNRPH 112
>ref|NP_112231.3| transmembrane protein 14B isoform a [Homo sapiens].
Length = 114
Score = 133 bits (334), Expect = 3e-31
Identities = 67/110 (60%), Positives = 75/110 (68%), Gaps = 1/110 (0%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
M+K PLVPLHW GFGY ALV SGGI+GY K GSVPS YQL QDP
Sbjct: 1 MEKPLFPLVPLHWFGFGYTALVVSGGIVGYVKTGSVPSLAAGLLFGSLAGLGAYQLYQDP 60
Query: 345 RNIWVFL-VTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
RN+W FL TS T G+MGMR Y+ GKFMP GLIAGASLLM AK+G+ +L
Sbjct: 61 RNVWGFLAATSVTFVGVMGMRSYYYGKFMPVGLIAGASLLMAAKVGVRML 110
>ref|NP_001116700.1| transmembrane protein 14E [Homo sapiens].
Length = 125
Score = 57.8 bits (138), Expect(2) = 2e-19
Identities = 27/38 (71%), Positives = 29/38 (76%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPS 278
MQ D GP VPL+W+GF YAAL A GGI GYAK GSV S
Sbjct: 1 MQMDPGPQVPLYWLGFVYAALAALGGISGYAKVGSVQS 38
Score = 57.0 bits (136), Expect(2) = 2e-19
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = +2
Query: 344 KEHLGFLSYIWNLGWHHGNEILPLWKIYACGLDCRCQFADGRQTWN*CVE*TPSVVVTAP 523
KEHL YIW+L ++ N+IL LW IYACG CRC + + E SVV +
Sbjct: 61 KEHLSSPVYIWDLARYYANKILTLWNIYACGFSCRCLLIVSK-LGSMYGEQILSVVAMSQ 119
Query: 524 LGLMKN 541
LGLMKN
Sbjct: 120 LGLMKN 125
>ref|NP_001121183.1| transmembrane protein 14B isoform b [Homo sapiens].
Length = 80
Score = 92.8 bits (229), Expect = 4e-19
Identities = 51/109 (46%), Positives = 59/109 (54%)
Frame = +3
Query: 165 MQKDSGPLVPLHWIGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDP 344
M+K PLVPLHW GFGY ALV SGGI+GY K +
Sbjct: 1 MEKPLFPLVPLHWFGFGYTALVVSGGIVGYVKTAA------------------------- 35
Query: 345 RNIWVFLVTSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
TS T G+MGMR Y+ GKFMP GLIAGASLLM AK+G+ +L
Sbjct: 36 --------TSVTFVGVMGMRSYYYGKFMPVGLIAGASLLMAAKVGVRML 76
>ref|NP_054770.1| transmembrane protein 14A [Homo sapiens].
Length = 99
Score = 82.8 bits (203), Expect = 4e-16
Identities = 45/96 (46%), Positives = 58/96 (60%)
Frame = +3
Query: 204 IGFGYAALVASGGIIGYAKAGSVPSXXXXXXXXXXXXXXXYQLSQDPRNIWVFLVTSGTL 383
IGFGYAALV G I GY + G VPS Y++S D R++ V L T+ L
Sbjct: 4 IGFGYAALVTFGSIFGYKRRGGVPSLIAGLFVGCLAGYGAYRVSNDKRDVKVSLFTAFFL 63
Query: 384 AGIMGMRFYHSGKFMPAGLIAGASLLMVAKLGISVL 491
A IMG+RF S K MPAGL+AG SL+M+ +L + +L
Sbjct: 64 ATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL 99
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,857,631
Number of extensions: 975975
Number of successful extensions: 2324
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2322
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008599
(951 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 938 0.0
Sscrofa_Chr14 573 e-161
Sscrofa_Chr02 349 2e-93
>Sscrofa_Chr07
|| Length = 134764511
Score = 938 bits (473), Expect = 0.0
Identities = 489/497 (98%)
Strand = Plus / Plus
Query: 452 cagtttgctgatggtcgccaaacttggaattagtgtgttgagtaaaccccatccgtagta 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781133 cagtttgctgatggtcgccaaacttggaattagtgtgttgagtaaaccccatccgtagta 7781192
Query: 512 gtcacggccccgcttggactcatgaagaattgttaaccttcccactatttcttgtgcatt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781193 gtcacggccccgcttggactcatgaagaattgttaaccttcccactatttcttgtgcatt 7781252
Query: 572 aatacgtgcagcgtcttcacatattctgaaaccttaaaacccaaaacaacactgaacttt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781253 aatacgtgcagcgtcttcacatattctgaaaccttaaaacccaaaacaacactgaacttt 7781312
Query: 632 gcagagnnnnnnnntcagtcattatggttccgactctaaagaggtgggtgtgtgtaacac 691
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781313 gcagagaaaaaaaatcagtcattatggttccgactctaaagaggtgggtgtgtgtaacac 7781372
Query: 692 aagatctttctctcgtcgtgtcctcgttcagcttgattctttttattggtctcctctctt 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781373 aagatctttctctcgtcgtgtcctcgttcagcttgattctttttattggtctcctctctt 7781432
Query: 752 ctttctgtacctataggtaaaatctcaaagtaaaaaagttaggtgtcaccactggggccc 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781433 ctttctgtacctataggtaaaatctcaaagtaaaaaagttaggtgtcaccactggggccc 7781492
Query: 812 ctgaaaccccctgccctactcaggaccagtgtgaaagaaaccttttaatgagaattaggg 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781493 ctgaaaccccctgccctactcaggaccagtgtgaaagaaaccttttaatgagaattaggg 7781552
Query: 872 tatcagttctttagctcatcttagagcacagacctgctttgaaattatgttcaatgaaat 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7781553 tatcagttctttagctcatcttagagcacagacctgctttgaaattatgttcaatgaaat 7781612
Query: 932 caatgaaaataaagttt 948
|||||||||||||||||
Sbjct: 7781613 caatgaaaataaagttt 7781629
Score = 234 bits (118), Expect = 7e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 2 cccctggccccgcccctgagacgtagaggacgcgccgcgacatttcctgcaggaccgcag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7774429 cccctggccccgcccctgagacgtagaggacgcgccgcgacatttcctgcaggaccgcag 7774488
Query: 62 gtcggggactcacggttctgcgttctcgtcctccggtgcagaccttcgggaagtaggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7774489 gtcggggactcacggttctgcgttctcgtcctccggtgcagaccttcgggaagtaggt 7774546
Score = 208 bits (105), Expect = 4e-51
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 262 caggcagcgtcccgtccctggcggccgggctcctcttcggtggcctagcgggcctgggtg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7777184 caggcagcgtcccgtccctggcggccgggctcctcttcggtggcctagcgggcctgggtg 7777243
Query: 322 cctaccagctgtctcaggatccaaggaacatttgggttttcttag 366
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7777244 cctaccagctgtctcaggatccaaggaacatttgggttttcttag 7777288
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 365 agttacatctggaaccttggctggcatcatgggaatgagattctaccactctggaaaatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7780150 agttacatctggaaccttggctggcatcatgggaatgagattctaccactctggaaaatt 7780209
Query: 425 tatgcctgcgggcttgattgcaggtgccag 454
||||||||||||||||||||||||||||||
Sbjct: 7780210 tatgcctgcgggcttgattgcaggtgccag 7780239
Score = 147 bits (74), Expect = 1e-32
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 188 agtgcctttacattggattggctttggttatgcagcactggttgcttccggcgggatcat 247
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7776076 agtgcctttacattggattggctttggttatgcagcactggttgcttccggtgggatcat 7776135
Query: 248 tggctatgcaaaagcagg 265
||||||||||||||||||
Sbjct: 7776136 tggctatgcaaaagcagg 7776153
Score = 127 bits (64), Expect = 1e-26
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 116 aggtgcaggcctggtctaatcttctgtcagtacggagtggaagagaacaatgcagaagga 175
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7775683 aggtacaggcctggtctaatcttctgtctgtacggagtggaagagaacaatgcagaagga 7775742
Query: 176 ttccggcccact 187
||||||||||||
Sbjct: 7775743 ttccggcccact 7775754
>Sscrofa_Chr14
|| Length = 153851969
Score = 573 bits (289), Expect = e-161
Identities = 422/465 (90%), Gaps = 1/465 (0%)
Strand = Plus / Minus
Query: 97 gtgcagaccttcgggaagtaggtgcaggcctggtctaatcttctgtcagtacggagtgga 156
|||||||||||| ||||| ||||||||||||||| |||||| ||||| | |||||||| |
Sbjct: 115689210 gtgcagaccttcaggaaggaggtgcaggcctggtgtaatctcctgtctgcacggagtgaa 115689151
Query: 157 agagaacaatgcagaaggattccggcccactagtgcctttacattggattggctttggtt 216
|||||| |||||||||||| || ||||||| |||||||| ||| ||||||||||||||||
Sbjct: 115689150 agagaataatgcagaaggactctggcccacgagtgccttcacactggattggctttggtt 115689091
Query: 217 atgcagcactggttgcttccggcgggatcattggctatgcaaaagcaggcagcgtcccgt 276
||| |||||||||||||| | |||||||||||||||||||||||||| || ||||| |
Sbjct: 115689090 atgtggcactggttgcttctagtgggatcattggctatgcaaaagcaggtagggtcccat 115689031
Query: 277 ccctggcggccgggctcctcttcggtggcctagcgggcctgggtgcctaccagctgtctc 336
|||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct: 115689030 ccctggcggccggggtcctcttcggtggcttagagggcctgggtgcctaccagctatctc 115688971
Query: 337 aggatccaaggaacatttgggttttcttagttacatctggaaccttggctggcatcatgg 396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 115688970 aggatccaaggaacatttgggttttctcagttacatctggaaccttggctggcattatgg 115688911
Query: 397 gaatgagattctaccactctggaaaatttatgcctgcgggcttgattgcaggtgccagtt 456
||||||||||||||||| ||||||||||| |||||| |||||| || | ||||||||
Sbjct: 115688910 gaatgagattctaccacattggaaaatttacgcctgc-agcttgactgaggatgccagtt 115688852
Query: 457 tgctgatggtcgccaaacttggaattagtgtgttgagtaaaccccatccgtagtagtcac 516
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 115688851 tgctgatggtcgccaaacttgaaattagtgtgttgagtaaaccccatccatagtagtcat 115688792
Query: 517 ggccccgcttggactcatgaagaattgttaaccttcccactattt 561
|||||||||||||||||| ||||||| |||| ||||| |||||||
Sbjct: 115688791 ggccccgcttggactcataaagaatttttaaacttcctactattt 115688747
Score = 414 bits (209), Expect = e-113
Identities = 411/477 (86%), Gaps = 1/477 (0%)
Strand = Plus / Minus
Query: 97 gtgcagaccttcgggaagtaggtgcaggcctggtctaatcttctgtcagtacggagtgga 156
||||||| ||| |||||| |||| ||| |||||| |||||||| ||| || || |||| |
Sbjct: 76889938 gtgcagatctttgggaaggaggtacagccctggtgtaatcttcagtctgtgcg-agtgaa 76889880
Query: 157 agagaacaatgcagaaggattccggcccactagtgcctttacattggattggctttggtt 216
||||||||||||||||||| || || || ||||||| ||| |||||||||||||||||
Sbjct: 76889879 agagaacaatgcagaaggactctggtcccttagtgcccttattttggattggctttggtt 76889820
Query: 217 atgcagcactggttgcttccggcgggatcattggctatgcaaaagcaggcagcgtcccgt 276
|||||||| |||||| ||| | ||||||||||||||||||||||||| || |||| ||
Sbjct: 76889819 atgcagcattggttgtttctgattggatcattggctatgcaaaagcaggtagtgtcctgt 76889760
Query: 277 ccctggcggccgggctcctcttcggtggcctagcgggcctgggtgcctaccagctgtctc 336
|||||| | | | ||| ||||| ||||| |||| |||||||| ||||| ||||||||
Sbjct: 76889759 ccctggtgactgcactcttcttcagtggcttagcaggcctgggggcctattggctgtctc 76889700
Query: 337 aggatccaaggaacatttgggttttcttagttacatctggaaccttggctggcatcatgg 396
|||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 76889699 aggatccaggaaacatttgggttttcttagatacatctggaaccttggctggcattatga 76889640
Query: 397 gaatgagattctaccactctggaaaatttatgcctgcgggcttgattgcaggtgccagtt 456
||||||||||||||||||||||||||| |||||||| ||||||| ||| |||||||| ||
Sbjct: 76889639 gaatgagattctaccactctggaaaatgtatgcctgtgggcttggttgtaggtgccaatt 76889580
Query: 457 tgctgatggtcgccaaacttggaattagtgtgttgagtaaaccccatccgtagtagtcac 516
||||||||| |||||||||||||||||||| ||||||||||||| ||| ||||||||
Sbjct: 76889579 ggctgatggttgccaaacttggaattagtgtattgagtaaaccccgtccacagtagtcat 76889520
Query: 517 ggccccgcttggactcatgaagaattgttaaccttcccactatttcttgtgcattaa 573
|||||| |||||||||||| ||| || |||| ||| ||||||||| ||||| |||||
Sbjct: 76889519 ggccccacttggactcatggagactttttaaacttaccactattttttgtgtattaa 76889463
Score = 182 bits (92), Expect = 2e-43
Identities = 177/203 (87%), Gaps = 3/203 (1%)
Strand = Plus / Minus
Query: 745 ctctcttctttctgtacctataggtaaaatctcaaagtaaaaaa-gttaggtgtcaccac 803
|||||||||||| || || |||||||||||| ||||| |||| ||||||||||||||
Sbjct: 76889279 ctctcttctttccatatctctaggtaaaatctgcaagtataaaatgttaggtgtcaccat 76889220
Query: 804 tggggcccctgaaaccccctgccctactcag--gaccagtgtgaaagaaaccttttaatg 861
|||||||||||||||||| | || ||||||| ||||||||||||||||| ||||| |||
Sbjct: 76889219 tggggcccctgaaaccccattccttactcagaggaccagtgtgaaagaaagcttttgatg 76889160
Query: 862 agaattagggtatcagttctttagctcatcttagagcacagacctgctttgaaattatgt 921
| | ||||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 76889159 aaatttaggatatctgttcttttgctcatcttagagcacagacccactttgaaattatgt 76889100
Query: 922 tcaatgaaatcaatgaaaataaa 944
| |||||||| || |||||||||
Sbjct: 76889099 taaatgaaataaacgaaaataaa 76889077
Score = 135 bits (68), Expect = 5e-29
Identities = 183/220 (83%), Gaps = 15/220 (6%)
Strand = Plus / Minus
Query: 725 tgattctt-tttattggtctcctctcttctttctgtacctataggtaaaatctcaaagta 783
|||||||| |||||| || | ||||||||| ||||| || |||||||||||||| || |
Sbjct: 115688327 tgattcttgtttattagttttctctcttctccctgtatctgtaggtaaaatctcanagca 115688268
Query: 784 aaaaagttaggtgtcaccactggggcccctgaaaccccctgccctactcaggaccagtgt 843
|||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 115688267 taaaatgtaggtgtcaccactggggcccctgaaaccc------------aggaccagtgt 115688220
Query: 844 gaaagaaaccttttaatgagaattagggtatcagttctttagctcatcttagagcacaga 903
|||||||| |||| ||||||| ||||| |||| | ||||| ||||||| |||||||||||
Sbjct: 115688219 gaaagaaaactttcaatgagatttaggctatctgctcttttgctcatc-tagagcacaga 115688161
Query: 904 cctgctttgaaattatgttcaatgaaatcaatgaaaataa 943
||| |||| |||||||||| ||||||||||||| ||||||
Sbjct: 115688160 cctacttt-aaattatgttaaatgaaatcaatgtaaataa 115688122
>Sscrofa_Chr02
|| Length = 162569375
Score = 349 bits (176), Expect = 2e-93
Identities = 336/388 (86%), Gaps = 1/388 (0%)
Strand = Plus / Plus
Query: 156 aagagaacaatgcagaaggattccggcccactagtgcctttacattggattggctttggt 215
|||| ||||||||||||||| || |||||||||||||||| ||||||||||| |||||||
Sbjct: 28643441 aagaaaacaatgcagaaggactctggcccactagtgccttgacattggattgactttggt 28643500
Query: 216 tatgcagcactggttgcttccggcgggatcattggctatgcaaaagcaggcagcgtcccg 275
|||||||||||| |||||| | ||||||| | ||||||||||| ||| || |||||
Sbjct: 28643501 tatgcagcactgcctgcttctgatgggatcactccctatgcaaaaggaggtagtgtcccc 28643560
Query: 276 tccctggcggccgggctcctcttcggtggcctagcgggcctggg-tgcctaccagctgtc 334
||||| | || ||||||||||| ||| | || | || |||| | |||| || | ||
Sbjct: 28643561 accctgactgctgggctcctctttggtagtttatcaggtttggggtacctattagttttc 28643620
Query: 335 tcaggatccaaggaacatttgggttttcttagttacatctggaaccttggctggcatcat 394
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct: 28643621 tcaggatccaaggaacatttgggttttcttagttacacctggaaccttggcaggcattat 28643680
Query: 395 gggaatgagattctaccactctggaaaatttatgcctgcgggcttgattgcaggtgccag 454
|||||||||||||||||||||||| |||| | ||||||| |||| || ||||||||||||
Sbjct: 28643681 gggaatgagattctaccactctgggaaatgtctgcctgcaggctggactgcaggtgccag 28643740
Query: 455 tttgctgatggtcgccaaacttggaattagtgtgttgagtaaaccccatccgtagtagtc 514
||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct: 28643741 tttgctgatggtcaccaaacttggacttagtgtgttgggtaaaccccatccatagtagtc 28643800
Query: 515 acggccccgcttggactcatgaagaatt 542
| ||||| ||||||||| |||||||||
Sbjct: 28643801 atggcccaccttggactcctgaagaatt 28643828
Score = 65.9 bits (33), Expect = 4e-08
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 877 gttctttagctcatcttagagcacagacctg-ctttgaaattatgttcaatgaaatcaat 935
||||||| |||||||||||||||||| || ||||||||||||| | |||||||||| |
Sbjct: 28645138 gttctttttctcatcttagagcacagatctcactttgaaattatgctaaatgaaatcagt 28645197
Query: 936 gaaaataaagttt 948
||||||| |||||
Sbjct: 28645198 gaaaatatagttt 28645210
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,273,261
Number of extensions: 197
Number of successful extensions: 197
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 192
Number of HSP's successfully gapped: 15
Length of query: 951
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 930
Effective length of database: 2,808,413,156
Effective search space: 2611824235080
Effective search space used: 2611824235080
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)