Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068812.1| transmembrane protein 102 [Bos taurus]. 273 1e-86
Alignment gi|NP_001192785.1| protein MB21D2 [Bos taurus]. 81 1e-15
Alignment gi|XP_002684879.1| PREDICTED: hypothetical protein [Bos taurus]. 81 1e-15
>ref|NP_001068812.1| transmembrane protein 102 [Bos taurus].
Length = 512
Score = 273 bits (699), Expect(2) = 1e-86
Identities = 132/179 (73%), Positives = 136/179 (75%)
Frame = +3
Query: 453 MASAVXXXXXXXXXXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDL 632
MASAV LTDIDFCSGA GVQESW+DGPKPGPDL
Sbjct: 1 MASAVWGNAPWWSPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWNDGPKPGPDL 60
Query: 633 LQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFT 812
LQAKDFVFSLL LIHRRDPRFPPQ E RGGIREGSLDLGP PLGPY RGPHYD GFT
Sbjct: 61 LQAKDFVFSLLSLIHRRDPRFPPQTELLLLRGGIREGSLDLGPAPLGPYTRGPHYDAGFT 120
Query: 813 LLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPT 989
LLVPVFSLD TGQELQLD+ SCYAW+CLPEQVRG S+REAWQDCLGPPVPGG D IHPT
Sbjct: 121 LLVPVFSLDGTGQELQLDMRSCYAWLCLPEQVRGTSVREAWQDCLGPPVPGGRDWIHPT 179
Score = 65.9 bits (159), Expect(2) = 1e-86
Identities = 27/39 (69%), Positives = 36/39 (92%)
Frame = +2
Query: 1007 KDPKTSVDHPHGDVTDPEAHKSLEKSPNNVSVPKSPQQD 1123
+DP++SVD PH D+ +PEAH+SLEKSP+NVSVP+SPQQ+
Sbjct: 186 RDPQSSVDQPHSDIIEPEAHESLEKSPSNVSVPESPQQN 224
>ref|NP_001192785.1| protein MB21D2 [Bos taurus].
Length = 491
Score = 81.3 bits (199), Expect = 1e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 525 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 704
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 705 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 875
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 876 CYAWVCLPEQVRGASIREAWQDC 944
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
>ref|XP_002684879.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 491
Score = 81.3 bits (199), Expect = 1e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 525 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 704
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 705 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 875
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 876 CYAWVCLPEQVRGASIREAWQDC 944
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,050,632
Number of extensions: 1614058
Number of successful extensions: 6526
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6487
Number of HSP's successfully gapped: 4
Length of query: 375
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,240,222
Effective search space: 3859100162
Effective search space used: 3859100162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546590.2| PREDICTED: hypothetical protein XP_546590 [Cani... 258 7e-69
Alignment gi|XP_850514.1| PREDICTED: hypothetical protein XP_845421 [Cani... 71 2e-12
>ref|XP_546590.2| PREDICTED: hypothetical protein XP_546590 [Canis familiaris].
Length = 893
Score = 258 bits (659), Expect = 7e-69
Identities = 127/191 (66%), Positives = 138/191 (72%)
Frame = +3
Query: 447 DRMASAVXXXXXXXXXXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGP 626
+ MASAV LTDIDFCSGA GVQESWSD PKPGP
Sbjct: 389 NHMASAVWGSAPWWGPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWSDAPKPGP 448
Query: 627 DLLQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTG 806
DLL+AKDFVFSLLGL+HRRDPRFPPQAE RGGIREGSLDLG PLGPY RGPHYD G
Sbjct: 449 DLLRAKDFVFSLLGLVHRRDPRFPPQAELLMLRGGIREGSLDLGLAPLGPYIRGPHYDAG 508
Query: 807 FTLLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHP 986
FTLLVPVFSLD TGQELQLD SC+A + LPEQ+RG S+REAWQDCLGPP PGG DS+H
Sbjct: 509 FTLLVPVFSLDGTGQELQLDAESCFARLRLPEQIRGTSVREAWQDCLGPPAPGGRDSVHR 568
Query: 987 TPIEKVSRTRK 1019
T E+ + R+
Sbjct: 569 TQSEESPKDRQ 579
>ref|XP_850514.1| PREDICTED: hypothetical protein XP_845421 [Canis familiaris].
Length = 454
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +3
Query: 648 FVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPV 827
F+F LG++ + D + P E GG+REG +DL L YARG YD FTLLVP
Sbjct: 28 FLFLFLGMVQKLDQKLPVANEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPA 87
Query: 828 FSLDDTGQELQLDV---GSCYAWVCLPEQVRGASIREAWQDC 944
L D Q + LD+ C++W+ L G + W+DC
Sbjct: 88 LKLHDRNQPVTLDMRHSALCHSWLSLRLFDEGTISK--WKDC 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,347,166
Number of extensions: 1677782
Number of successful extensions: 7011
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6963
Number of HSP's successfully gapped: 2
Length of query: 375
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 271
Effective length of database: 15,407,560
Effective search space: 4175448760
Effective search space used: 4175448760
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358310.1| PREDICTED: transmembrane protein 102-like, p... 277 4e-93
Alignment gi|XP_001925594.3| PREDICTED: protein MB21D2 [Sus scrofa]. 81 9e-16
>ref|XP_003358310.1| PREDICTED: transmembrane protein 102-like, partial [Sus scrofa].
Length = 482
Score = 277 bits (708), Expect(2) = 4e-93
Identities = 130/139 (93%), Positives = 131/139 (94%)
Frame = +3
Query: 585 GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPT 764
GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAE RGGIREGSLDLGPT
Sbjct: 11 GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAELLLLRGGIREGSLDLGPT 70
Query: 765 PLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDC 944
PLGPYARGPHYDTGFTLLVPVFSLDDT QELQLDVGSCYAWVCLPEQVRGASIREAWQDC
Sbjct: 71 PLGPYARGPHYDTGFTLLVPVFSLDDTEQELQLDVGSCYAWVCLPEQVRGASIREAWQDC 130
Query: 945 LGPPVPGGGDSIHPTPIEK 1001
LGPPVPG GDSIHPT E+
Sbjct: 131 LGPPVPGEGDSIHPTQSEE 149
Score = 83.6 bits (205), Expect(2) = 4e-93
Identities = 38/43 (88%), Positives = 42/43 (97%)
Frame = +2
Query: 998 KSLKDPKTSVDHPHGDVTDPEAHKSLEKSPNNVSVPKSPQQDA 1126
+SLKDPKTSVD PHGDVTDPEAH+SLEKSP+NVSVP+SPQQDA
Sbjct: 149 ESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQDA 191
>ref|XP_001925594.3| PREDICTED: protein MB21D2 [Sus scrofa].
Length = 491
Score = 81.3 bits (199), Expect = 9e-16
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 525 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 704
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 705 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 875
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 876 CYAWVCLPEQVRGASIREAWQDC 944
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 31,790,336
Number of extensions: 1049511
Number of successful extensions: 4239
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4211
Number of HSP's successfully gapped: 3
Length of query: 375
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 274
Effective length of database: 8,829,335
Effective search space: 2419237790
Effective search space used: 2419237790
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028605.2| transmembrane protein 102 [Mus musculus]. 232 9e-65
Alignment gi|NP_808386.2| protein MB21D2 [Mus musculus]. 78 1e-14
>ref|NP_001028605.2| transmembrane protein 102 [Mus musculus].
Length = 509
Score = 232 bits (592), Expect(2) = 9e-65
Identities = 111/157 (70%), Positives = 121/157 (77%)
Frame = +3
Query: 519 LTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFP 698
LTDIDFCSGA VQESWS+GPKPG DLL+AKDFVF+LLGL+HR+DPRFP
Sbjct: 23 LTDIDFCSGAQLQELTQLIQELRVQESWSEGPKPGADLLRAKDFVFALLGLVHRQDPRFP 82
Query: 699 PQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDVGSC 878
PQAE RGGIREGSLDLG PLGPY+RGPHYD GFTLLVPVFSLD TG EL LD+ SC
Sbjct: 83 PQAELLLLRGGIREGSLDLGHAPLGPYSRGPHYDAGFTLLVPVFSLDGTGPELLLDLESC 142
Query: 879 YAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPT 989
AW+ LPE +RG +REAWQDCLGPPVP D H T
Sbjct: 143 SAWLRLPELMRGILVREAWQDCLGPPVPEESDMTHQT 179
Score = 33.9 bits (76), Expect(2) = 9e-65
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +2
Query: 998 KSLKDPKTSVDHPHGDVTDPEAHKSLEKSPNNVSVPKSPQQD 1123
+S D + SVD H V +PE H SL+KS +++S +S +D
Sbjct: 183 ESPTDRENSVDPSHDYVPEPEPHMSLQKSSSDLSESQSSYKD 224
>ref|NP_808386.2| protein MB21D2 [Mus musculus].
Length = 491
Score = 78.2 bits (191), Expect = 1e-14
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +3
Query: 639 AKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLL 818
AKDF+FS+LG++ + D + P E GG+REG +DL L YARG YD FTLL
Sbjct: 62 AKDFIFSMLGMVQKLDQKLPVANEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLL 121
Query: 819 VPVFSLDDTGQELQLDV---GSCYAWVCL 896
VP L D Q + LD+ C++W+ L
Sbjct: 122 VPALKLHDRNQPVTLDMRHSALCHSWLSL 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,735,424
Number of extensions: 1317212
Number of successful extensions: 4988
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4953
Number of HSP's successfully gapped: 3
Length of query: 375
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 272
Effective length of database: 12,523,851
Effective search space: 3406487472
Effective search space used: 3406487472
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848613.1| transmembrane protein 102 [Homo sapiens]. 249 6e-74
Alignment gi|NP_848591.2| protein MB21D2 [Homo sapiens]. 81 2e-15
>ref|NP_848613.1| transmembrane protein 102 [Homo sapiens].
Length = 508
Score = 249 bits (635), Expect(2) = 6e-74
Identities = 127/186 (68%), Positives = 133/186 (71%)
Frame = +3
Query: 453 MASAVXXXXXXXXXXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDL 632
MASAV LTDIDFCSGA GVQESWSDGPKPG DL
Sbjct: 1 MASAVWGSAPWWGPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWSDGPKPGADL 60
Query: 633 LQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFT 812
L+AKDFVFSLLGL+HRRDPRFPPQAE RGGIREGSLDLG PLGPYARGPHYD GFT
Sbjct: 61 LRAKDFVFSLLGLVHRRDPRFPPQAELLLLRGGIREGSLDLGHAPLGPYARGPHYDAGFT 120
Query: 813 LLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPTP 992
LLVP+FSLD G ELQLD+ SCYA VCLPE V G IRE WQDCLGPPVPG DSIH T
Sbjct: 121 LLVPMFSLD--GTELQLDLESCYAQVCLPEMVCGTPIREMWQDCLGPPVPGARDSIHRTE 178
Query: 993 IEKVSR 1010
E+ S+
Sbjct: 179 SEESSK 184
Score = 48.1 bits (113), Expect(2) = 6e-74
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +2
Query: 998 KSLKDPKTSVDHPHGDVTDPEAHKSLEKSPNNVSVPKSPQQD 1123
+S KD ++SVD PH VT+ EA SLEKSP++VS +SPQ D
Sbjct: 181 ESSKDWQSSVDQPHSYVTEHEAPVSLEKSPSDVSASESPQHD 222
>ref|NP_848591.2| protein MB21D2 [Homo sapiens].
Length = 491
Score = 81.3 bits (199), Expect = 2e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +3
Query: 525 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 704
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 705 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 875
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 876 CYAWVCLPEQVRGASIREAWQDC 944
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,885,366
Number of extensions: 1613173
Number of successful extensions: 6226
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6189
Number of HSP's successfully gapped: 3
Length of query: 375
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 271
Effective length of database: 14,868,908
Effective search space: 4029474068
Effective search space used: 4029474068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008602
(1126 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1191 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1191 bits (601), Expect = 0.0
Identities = 646/668 (96%)
Strand = Plus / Minus
Query: 1 tttaggggcgtggcctcgtgggcagcaggaagaagttacctgttgactcgctctatccan 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55013211 tttaggggcgtggcctcgtgggcagcaggaagaagttacctgttgactcgctctatccat 55013152
Query: 61 nnnnnnnnctcccccggcccttgcagctacccgtaagagggaagccgcaaaccacaagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55013151 ttttttttctcccccggcccttgcagctacccgtaagagggaagccgcaaaccacaagcc 55013092
Query: 121 tcttccgaaaaagaggtaaggggaggtagacaagggcggcggaggagactggctattgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55013091 tcttccgaaaaagaggtaaggggaggtagacaagggcggcggaggagactggctattgca 55013032
Query: 181 ttccgcaggagggctccaacagctactttttacctgctgagtcaggtgaaccggtccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55013031 ttccgcaggagggctccaacagctactttttacctgctgagtcaggtgaaccggtccatc 55012972
Query: 241 ggggcggggaccagcatatgagaaaaggaaaaggacataggaggtatttatttgttcgtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012971 ggggcggggaccagcatatgagaaaaggaaaaggacataggaggtatttatttgttcgtt 55012912
Query: 301 ttccagactaaatttagagcccttcacctgcagaccccagtgcctcggaaaaagagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012911 ttccagactaaatttagagcccttcacctgcagaccccagtgcctcggaaaaagagaaaa 55012852
Query: 361 aacgggggcgacttctctgcagcagaaggagagacctgtctgggcttccctccgtccgtg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 55012851 aacgggggcgacttctctgcagcagaaggagagacctgtctgggcttccctccgtcggtg 55012792
Query: 421 tacctcctagnnnnnnnnnnnnaaaagacagaatggcttccgccgtctgggggagtgctc 480
|||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 55012791 tacctcctagccgcccccccccaaaagacagaatggcttccgccgtctgggggagtgctc 55012732
Query: 481 cttggtggggcccaccgcccccagccccagcccggccgctcacggacatagacttctgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012731 cttggtggggcccaccgcccccagccccagcccggccgctcacggacatagacttctgct 55012672
Query: 541 ctggtgcccagctgcaagaactaacccagctgatccaggagctgggtgtgcaggagagct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012671 ctggtgcccagctgcaagaactaacccagctgatccaggagctgggtgtgcaggagagct 55012612
Query: 601 ggagtgacgggcccaagccgggaccagacctcctccaggctaaggactttgttttctctt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012611 ggagtgacgggcccaagccgggaccagacctcctccaggctaaggactttgttttctctt 55012552
Query: 661 tgctgggt 668
||||||||
Sbjct: 55012551 tgctgggt 55012544
Score = 805 bits (406), Expect = 0.0
Identities = 449/462 (97%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 666 ggtctcattcaccgtcgggaccctcgctttcctccccaggcagagctcttgctgcttcgt 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012460 ggtctcattcaccgtcgggaccctcgctttcctccccaggcagagctcttgctgcttcgt 55012401
Query: 726 ggcggaattcgcgagggctccctggatctggggcctacgcctctaggtccctacgcccgg 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012400 ggcggaattcgcgagggctccctggatctggggcctacgcctctaggtccctacgcccgg 55012341
Query: 786 ggacctcactatgacaccggcttcacgctcctggtgcccgtgttttcactagacgacact 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012340 ggacctcactatgacaccggcttcacgctcctggtgcccgtgttttcactagacgacact 55012281
Query: 846 gggcaggagctgcaactggacgtgggatcctgttacgcatgggtctgcctcccagagcag 905
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012280 gagcaggagctgcaactggacgtgggatcctgttacgcatgggtctgcctcccagagcag 55012221
Query: 906 gtacgcggagcctccatcagggaggcatggcaggattgcctaggacccccagtccccgga 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012220 gtacgcggagcctccatcagggaggcatggcaggattgcctaggacccccagtccccgga 55012161
Query: 966 ggaggtgattccatccaccccaccccaatcgaa-aaagtctcaaggacccgaaaacctct 1024
| |||||||||||||||||| |||| || ||| ||||||||||||||||||||||||||
Sbjct: 55012160 gaaggtgattccatccacccaacccaaagtgaagaaagtctcaaggacccgaaaacctct 55012101
Query: 1025 gtggaccacccgcacggggacgtcactgatcctgaagcacacaagtctttggaaaaatca 1084
|||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 55012100 gtggaccagccgcacggtgacgtcactgatcctgaggcacacgagtctttggaaaaatca 55012041
Query: 1085 cctaataacgtttcagtgccaaagtcgcctcagcaagacgca 1126
|||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 55012040 cctagtaacgtttcagtgccagagtcgcctcagcaagacgca 55011999
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,287,243
Number of extensions: 256
Number of successful extensions: 256
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 255
Number of HSP's successfully gapped: 4
Length of query: 1126
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1105
Effective length of database: 2,808,413,156
Effective search space: 3103296537380
Effective search space used: 3103296537380
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)