Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068812.1| transmembrane protein 102 [Bos taurus]. 435 e-122
Alignment gi|NP_001192785.1| protein MB21D2 [Bos taurus]. 81 2e-15
Alignment gi|XP_002684879.1| PREDICTED: hypothetical protein [Bos taurus]. 81 2e-15
>ref|NP_001068812.1| transmembrane protein 102 [Bos taurus].
Length = 512
Score = 435 bits (1119), Expect = e-122
Identities = 214/304 (70%), Positives = 230/304 (75%)
Frame = +2
Query: 245 MASAVXXXXXXXXXXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDL 424
MASAV LTDIDFCSGA GVQESW+DGPKPGPDL
Sbjct: 1 MASAVWGNAPWWSPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWNDGPKPGPDL 60
Query: 425 LQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFT 604
LQAKDFVFSLL LIHRRDPRFPPQ E RGGIREGSLDLGP PLGPY RGPHYD GFT
Sbjct: 61 LQAKDFVFSLLSLIHRRDPRFPPQTELLLLRGGIREGSLDLGPAPLGPYTRGPHYDAGFT 120
Query: 605 LLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPTQ 784
LLVPVFSLD TGQELQLD+ SCYAW+CLPEQVRG S+REAWQDCLGPPVPGG D IHPT
Sbjct: 121 LLVPVFSLDGTGQELQLDMRSCYAWLCLPEQVRGTSVREAWQDCLGPPVPGGRDWIHPTD 180
Query: 785 SEESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQDATEVGFPSPLKKTDGD 964
S E +DP++SVDQPH D+ +PEAHESLEKSPSNVSVPESPQQ+ T++GFPS ++T+ D
Sbjct: 181 SREGPRDPQSSVDQPHSDIIEPEAHESLEKSPSNVSVPESPQQNLTDIGFPSLSEETNDD 240
Query: 965 VTKAADVSPMPQPQPSEAREAWPTLCPXXXXXXXXXXXXXXXESLLPDPGAPRLVHATRH 1144
VTKAADVS P PQPSEAREAWPTLCP ESL P PGAPRLVHA RH
Sbjct: 241 VTKAADVS--PGPQPSEAREAWPTLCPAQVAAWFFASLAAVAESLFPVPGAPRLVHAARH 298
Query: 1145 AGYT 1156
AG+T
Sbjct: 299 AGFT 302
>ref|NP_001192785.1| protein MB21D2 [Bos taurus].
Length = 491
Score = 81.3 bits (199), Expect = 2e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +2
Query: 317 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 496
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 497 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 667
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 668 CYAWVCLPEQVRGASIREAWQDC 736
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
>ref|XP_002684879.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 491
Score = 81.3 bits (199), Expect = 2e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +2
Query: 317 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 496
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 497 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 667
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 668 CYAWVCLPEQVRGASIREAWQDC 736
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 53,450,760
Number of extensions: 1841323
Number of successful extensions: 8884
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8819
Number of HSP's successfully gapped: 3
Length of query: 386
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,240,222
Effective search space: 4015742604
Effective search space used: 4015742604
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_546590.2| PREDICTED: hypothetical protein XP_546590 [Cani... 362 e-100
Alignment gi|XP_850514.1| PREDICTED: hypothetical protein XP_845421 [Cani... 71 2e-12
>ref|XP_546590.2| PREDICTED: hypothetical protein XP_546590 [Canis familiaris].
Length = 893
Score = 362 bits (928), Expect = e-100
Identities = 200/351 (56%), Positives = 225/351 (64%)
Frame = +2
Query: 104 NLEPFTCRPQCLGKREKTGATSLQQKERPVWASLRPCTS*PPPPKDRMASAVXXXXXXXX 283
NLE +P L +R + TSL ++ P + MASAV
Sbjct: 358 NLEKEETKPLQLSRRGQPQTTSLFRRA--------------PKRLNHMASAVWGSAPWWG 403
Query: 284 XXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGL 463
LTDIDFCSGA GVQESWSD PKPGPDLL+AKDFVFSLLGL
Sbjct: 404 PPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWSDAPKPGPDLLRAKDFVFSLLGL 463
Query: 464 IHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQ 643
+HRRDPRFPPQAE RGGIREGSLDLG PLGPY RGPHYD GFTLLVPVFSLD TGQ
Sbjct: 464 VHRRDPRFPPQAELLMLRGGIREGSLDLGLAPLGPYIRGPHYDAGFTLLVPVFSLDGTGQ 523
Query: 644 ELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPTQSEESLKDPKTSVD 823
ELQLD SC+A + LPEQ+RG S+REAWQDCLGPP PGG DS+H TQSEES KD ++ VD
Sbjct: 524 ELQLDAESCFARLRLPEQIRGTSVREAWQDCLGPPAPGGRDSVHRTQSEESPKDRQSPVD 583
Query: 824 QPHGDVTDPEAHESLEKSPSNVSVPESPQQDATEVGFPSPLKKTDGDVTKAADVSPMPQP 1003
QPH D T+PE SL++S S PE QD ++ +PLK +GD+ KAA VSP+ P
Sbjct: 584 QPH-DGTEPEPTVSLDQS----SGPEG--QDVIDLELSTPLKTLNGDLRKAAVVSPI--P 634
Query: 1004 QPSEAREAWPTLCPXXXXXXXXXXXXXXXESLLPDPGAPRLVHATRHAGYT 1156
PSE EAWPTLCP ESL P PGAPRLVHA RHAG+T
Sbjct: 635 WPSERWEAWPTLCPAQVAAWFFASLAAVAESLFPVPGAPRLVHAARHAGFT 685
>ref|XP_850514.1| PREDICTED: hypothetical protein XP_845421 [Canis familiaris].
Length = 454
Score = 71.2 bits (173), Expect = 2e-12
Identities = 39/102 (38%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Frame = +2
Query: 440 FVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPV 619
F+F LG++ + D + P E GG+REG +DL L YARG YD FTLLVP
Sbjct: 28 FLFLFLGMVQKLDQKLPVANEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPA 87
Query: 620 FSLDDTGQELQLDV---GSCYAWVCLPEQVRGASIREAWQDC 736
L D Q + LD+ C++W+ L G + W+DC
Sbjct: 88 LKLHDRNQPVTLDMRHSALCHSWLSLRLFDEGTISK--WKDC 127
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 55,911,186
Number of extensions: 1908728
Number of successful extensions: 9347
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9291
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 281
Effective length of database: 15,374,224
Effective search space: 4320156944
Effective search space used: 4320156944
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358310.1| PREDICTED: transmembrane protein 102-like, p... 488 e-138
Alignment gi|XP_001925594.3| PREDICTED: protein MB21D2 [Sus scrofa]. 81 1e-15
>ref|XP_003358310.1| PREDICTED: transmembrane protein 102-like, partial [Sus scrofa].
Length = 482
Score = 488 bits (1256), Expect = e-138
Identities = 235/260 (90%), Positives = 237/260 (91%)
Frame = +2
Query: 377 GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPT 556
GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAE RGGIREGSLDLGPT
Sbjct: 11 GVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQAELLLLRGGIREGSLDLGPT 70
Query: 557 PLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDC 736
PLGPYARGPHYDTGFTLLVPVFSLDDT QELQLDVGSCYAWVCLPEQVRGASIREAWQDC
Sbjct: 71 PLGPYARGPHYDTGFTLLVPVFSLDDTEQELQLDVGSCYAWVCLPEQVRGASIREAWQDC 130
Query: 737 LGPPVPGGGDSIHPTQSEESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQD 916
LGPPVPG GDSIHPTQSEESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQD
Sbjct: 131 LGPPVPGEGDSIHPTQSEESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQD 190
Query: 917 ATEVGFPSPLKKTDGDVTKAADVSPMPQPQPSEAREAWPTLCPXXXXXXXXXXXXXXXES 1096
AT+VGFPSPLKKT+GDVTKAADVSPMPQPQPSEAREAWPTLCP ES
Sbjct: 191 ATDVGFPSPLKKTNGDVTKAADVSPMPQPQPSEAREAWPTLCPAQVAAWFFASLAAVAES 250
Query: 1097 LLPDPGAPRLVHATRHAGYT 1156
LLP PGAPRLVHA RHAGYT
Sbjct: 251 LLPVPGAPRLVHAARHAGYT 270
>ref|XP_001925594.3| PREDICTED: protein MB21D2 [Sus scrofa].
Length = 491
Score = 81.3 bits (199), Expect = 1e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +2
Query: 317 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 496
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 497 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 667
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 668 CYAWVCLPEQVRGASIREAWQDC 736
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 34,651,216
Number of extensions: 1198142
Number of successful extensions: 5807
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5765
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 285
Effective length of database: 8,829,335
Effective search space: 2516360475
Effective search space used: 2516360475
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001028605.2| transmembrane protein 102 [Mus musculus]. 330 1e-90
Alignment gi|NP_808386.2| protein MB21D2 [Mus musculus]. 78 1e-14
>ref|NP_001028605.2| transmembrane protein 102 [Mus musculus].
Length = 509
Score = 330 bits (846), Expect = 1e-90
Identities = 168/282 (59%), Positives = 190/282 (67%)
Frame = +2
Query: 311 LTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFP 490
LTDIDFCSGA VQESWS+GPKPG DLL+AKDFVF+LLGL+HR+DPRFP
Sbjct: 23 LTDIDFCSGAQLQELTQLIQELRVQESWSEGPKPGADLLRAKDFVFALLGLVHRQDPRFP 82
Query: 491 PQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDVGSC 670
PQAE RGGIREGSLDLG PLGPY+RGPHYD GFTLLVPVFSLD TG EL LD+ SC
Sbjct: 83 PQAELLLLRGGIREGSLDLGHAPLGPYSRGPHYDAGFTLLVPVFSLDGTGPELLLDLESC 142
Query: 671 YAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPTQSEESLKDPKTSVDQPHGDVTDP 850
AW+ LPE +RG +REAWQDCLGPPVP D H T S+ES D + SVD H V +P
Sbjct: 143 SAWLRLPELMRGILVREAWQDCLGPPVPEESDMTHQTHSKESPTDRENSVDPSHDYVPEP 202
Query: 851 EAHESLEKSPSNVSVPESPQQDATEVGFPSPLKKTDGDVTKAADVSPMPQPQPSEAREAW 1030
E H SL+KS S++S +S +D T P PL+ D A D P+PSEA +AW
Sbjct: 203 EPHMSLQKSSSDLSESQSSYKDITNPETPEPLETLSSD---ALDADESQVPKPSEAPKAW 259
Query: 1031 PTLCPXXXXXXXXXXXXXXXESLLPDPGAPRLVHATRHAGYT 1156
PTLCP ESL+P PGAPRLVHA RHAG T
Sbjct: 260 PTLCPTQVTSWFFVKLAEVAESLIPVPGAPRLVHAARHAGVT 301
>ref|NP_808386.2| protein MB21D2 [Mus musculus].
Length = 491
Score = 78.2 bits (191), Expect = 1e-14
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Frame = +2
Query: 431 AKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLL 610
AKDF+FS+LG++ + D + P E GG+REG +DL L YARG YD FTLL
Sbjct: 62 AKDFIFSMLGMVQKLDQKLPVANEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLL 121
Query: 611 VPVFSLDDTGQELQLDV---GSCYAWVCL 688
VP L D Q + LD+ C++W+ L
Sbjct: 122 VPALKLHDRNQPVTLDMRHSALCHSWLSL 150
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 45,394,562
Number of extensions: 1498171
Number of successful extensions: 6876
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6775
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 283
Effective length of database: 12,523,851
Effective search space: 3544249833
Effective search space used: 3544249833
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848613.1| transmembrane protein 102 [Homo sapiens]. 379 e-105
Alignment gi|NP_848591.2| protein MB21D2 [Homo sapiens]. 81 2e-15
>ref|NP_848613.1| transmembrane protein 102 [Homo sapiens].
Length = 508
Score = 379 bits (972), Expect = e-105
Identities = 198/304 (65%), Positives = 214/304 (70%)
Frame = +2
Query: 245 MASAVXXXXXXXXXXXXXXXXXLTDIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDL 424
MASAV LTDIDFCSGA GVQESWSDGPKPG DL
Sbjct: 1 MASAVWGSAPWWGPPPPAPARPLTDIDFCSGAQLQELTQLIQELGVQESWSDGPKPGADL 60
Query: 425 LQAKDFVFSLLGLIHRRDPRFPPQAEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFT 604
L+AKDFVFSLLGL+HRRDPRFPPQAE RGGIREGSLDLG PLGPYARGPHYD GFT
Sbjct: 61 LRAKDFVFSLLGLVHRRDPRFPPQAELLLLRGGIREGSLDLGHAPLGPYARGPHYDAGFT 120
Query: 605 LLVPVFSLDDTGQELQLDVGSCYAWVCLPEQVRGASIREAWQDCLGPPVPGGGDSIHPTQ 784
LLVP+FSLD G ELQLD+ SCYA VCLPE V G IRE WQDCLGPPVPG DSIH T+
Sbjct: 121 LLVPMFSLD--GTELQLDLESCYAQVCLPEMVCGTPIREMWQDCLGPPVPGARDSIHRTE 178
Query: 785 SEESLKDPKTSVDQPHGDVTDPEAHESLEKSPSNVSVPESPQQDATEVGFPSPLKKTDGD 964
SEES KD ++SVDQPH VT+ EA SLEKSPS+VS ESPQ D ++G +PLK D
Sbjct: 179 SEESSKDWQSSVDQPHSYVTEHEAPVSLEKSPSDVSASESPQHDVVDLGSTAPLKTMSSD 238
Query: 965 VTKAADVSPMPQPQPSEAREAWPTLCPXXXXXXXXXXXXXXXESLLPDPGAPRLVHATRH 1144
VTKAA SP+ P+PSEAREAWPTLC ESL+P PGAPRLVHA RH
Sbjct: 239 VTKAAVESPV--PKPSEAREAWPTLCSAQVAAWFFATLAAVAESLIPVPGAPRLVHAARH 296
Query: 1145 AGYT 1156
AG+T
Sbjct: 297 AGFT 300
>ref|NP_848591.2| protein MB21D2 [Homo sapiens].
Length = 491
Score = 81.3 bits (199), Expect = 2e-15
Identities = 48/143 (33%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Frame = +2
Query: 317 DIDFCSGAXXXXXXXXXXXXGVQESWSDGPKPGPDLLQAKDFVFSLLGLIHRRDPRFPPQ 496
++DF SGA + + ++ AKDF+FS+LG++ + D + P
Sbjct: 24 ELDFRSGARVEELNKLIQEFTKHDQREYDDQRALEIHTAKDFIFSMLGMVQKLDQKLPVA 83
Query: 497 AEXXXXRGGIREGSLDLGPTPLGPYARGPHYDTGFTLLVPVFSLDDTGQELQLDV---GS 667
E GG+REG +DL L YARG YD FTLLVP L D Q + LD+
Sbjct: 84 NEYLLLSGGVREGVVDLDLDELNVYARGTDYDMDFTLLVPALKLHDRNQPVTLDMRHSAL 143
Query: 668 CYAWVCLPEQVRGASIREAWQDC 736
C++W+ L G + W+DC
Sbjct: 144 CHSWLSLRLFDEGTISK--WKDC 164
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 54,364,570
Number of extensions: 1837379
Number of successful extensions: 8379
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 8289
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 282
Effective length of database: 14,868,908
Effective search space: 4193032056
Effective search space used: 4193032056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008603
(1158 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 1277 0.0
>Sscrofa_Chr12
|| Length = 63588571
Score = 1277 bits (644), Expect = 0.0
Identities = 685/701 (97%)
Strand = Plus / Minus
Query: 458 ggtctcattcaccgtcgggaccctcgctttcctccccaggcagagctcttgctgcttcgt 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012460 ggtctcattcaccgtcgggaccctcgctttcctccccaggcagagctcttgctgcttcgt 55012401
Query: 518 ggcggaattcgcgagggctccctggatctggggcctacgcctctaggtccctacgcccgg 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012400 ggcggaattcgcgagggctccctggatctggggcctacgcctctaggtccctacgcccgg 55012341
Query: 578 ggacctcactatgacaccggcttcacgctcctggtgcccgtgttttcactagacgacact 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012340 ggacctcactatgacaccggcttcacgctcctggtgcccgtgttttcactagacgacact 55012281
Query: 638 gggcaggagctgcaactggacgtgggatcctgttacgcatgggtctgcctcccagagcag 697
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012280 gagcaggagctgcaactggacgtgggatcctgttacgcatgggtctgcctcccagagcag 55012221
Query: 698 gtacgcggagcctccatcagggaggcatggcaggattgcctaggacccccagtccccgga 757
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012220 gtacgcggagcctccatcagggaggcatggcaggattgcctaggacccccagtccccgga 55012161
Query: 758 ggaggtgattccatccacccaacccaaagcgaagaaagtctcaaggacccgaaaacctct 817
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 55012160 gaaggtgattccatccacccaacccaaagtgaagaaagtctcaaggacccgaaaacctct 55012101
Query: 818 gtggaccagccgcacggtgacgtcactgatcctgaggcacacgagtctttggaaaaatca 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012100 gtggaccagccgcacggtgacgtcactgatcctgaggcacacgagtctttggaaaaatca 55012041
Query: 878 cctagtaacgtttcagtgccagagtcgcctcagcaagacgcaaccgaagttggctttccc 937
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 55012040 cctagtaacgtttcagtgccagagtcgcctcagcaagacgcaaccgatgttggctttccc 55011981
Query: 938 tcaccattgnnnnnnncggatggtgacgtcaccaaagcagccgacgttagcccaatgcca 997
||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 55011980 tcaccattgaaaaaaacgaatggtgacgtcaccaaagcagccgacgttagcccaatgcca 55011921
Query: 998 cagccccagccgtcggaggctcgggaggcatggcccacattgtgtcccgcccaggtggct 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55011920 cagccccagccgtcggaggctcgggaggcatggcccacattgtgtcccgcccaggtggct 55011861
Query: 1058 gcctggttctttgcttcgctggctgcggtcgctgagtccctgctcccggacccaggtgcc 1117
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 55011860 gcctggttcttcgcttcgctggctgcggtcgctgagtccctgctcccggtcccaggtgcc 55011801
Query: 1118 ccgcgcttggttcacgccacccgccacgctgggtacaccac 1158
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 55011800 ccgcgcttggttcacgcagcccgccacgctgggtacaccac 55011760
Score = 632 bits (319), Expect = e-178
Identities = 351/364 (96%), Gaps = 1/364 (0%)
Strand = Plus / Minus
Query: 98 agactaaatttagagcccttcacctgcagaccccagtgcctcggaaaaagagaaaaaacg 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012907 agactaaatttagagcccttcacctgcagaccccagtgcctcggaaaaagagaaaaaacg 55012848
Query: 158 ggggcgacttctctgcagcagaaggagagacctgtctgggcttccctccgtccgtgtacc 217
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 55012847 ggggcgacttctctgcagcagaaggagagacctgtctgggcttccctccgtcggtgtacc 55012788
Query: 218 tcctagnnnnnnnnnnn-aaaagacagaatggcttccgccgtctgggggagtgctccttg 276
|||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012787 tcctagccgcccccccccaaaagacagaatggcttccgccgtctgggggagtgctccttg 55012728
Query: 277 gtggggcccaccgcccccagccccagcccggccgctcacggacatagacttctgctctgg 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012727 gtggggcccaccgcccccagccccagcccggccgctcacggacatagacttctgctctgg 55012668
Query: 337 tgcccagctgcaagaactaacccagctgatccaggagctgggtgtgcaggagagctggag 396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012667 tgcccagctgcaagaactaacccagctgatccaggagctgggtgtgcaggagagctggag 55012608
Query: 397 tgacgggcccaagccgggaccagacctcctccaggctaaggactttgttttctctttgct 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55012607 tgacgggcccaagccgggaccagacctcctccaggctaaggactttgttttctctttgct 55012548
Query: 457 gggt 460
||||
Sbjct: 55012547 gggt 55012544
Score = 143 bits (72), Expect = 2e-31
Identities = 90/99 (90%)
Strand = Plus / Minus
Query: 1 tacctgttgactcgctctatccannnnnnnnnctcccccggcccttgcagctacccgtaa 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 55013175 tacctgttgactcgctctatccatttttttttctcccccggcccttgcagctacccgtaa 55013116
Query: 61 gagggaagccgcaaaccacaagcctcttccgaaaaagag 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55013115 gagggaagccgcaaaccacaagcctcttccgaaaaagag 55013077
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,598,468
Number of extensions: 237
Number of successful extensions: 237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 4
Length of query: 1158
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1137
Effective length of database: 2,808,413,156
Effective search space: 3193165758372
Effective search space used: 3193165758372
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)