Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001032559.1| probable cytosolic iron-sulfur protein assem... 613 e-175
Alignment gi|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1... 108 8e-24
Alignment gi|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked... 108 8e-24
Alignment gi|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked... 108 8e-24
Alignment gi|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked... 108 8e-24
Alignment gi|NP_001138704.1| F-box-like/WD repeat-containing protein TBL1... 107 1e-23
Alignment gi|NP_001069033.1| protein SEC13 homolog [Bos taurus]. 96 4e-20
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 92 6e-19
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 92 8e-19
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 86 7e-17
>ref|NP_001032559.1| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Bos
taurus].
Length = 339
Score = 613 bits (1580), Expect = e-175
Identities = 286/317 (90%), Positives = 293/317 (92%)
Frame = +2
Query: 119 MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 298
MKDSLVLL RI AHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH
Sbjct: 1 MKDSLVLLSRILAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 60
Query: 299 QRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLL 478
QRTVRKVAWSPCGNYLASASFDATTCIWKKN+DDFECVTTLEGHENEVKSVAWAPSGNLL
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNEDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 479 ATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREE 658
ATCSRDK LNSHTQDVKHV+WHPSQELLASASYDDTVKLYREE
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE 180
Query: 659 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPS 838
EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC+GS+ S
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSEAS 240
Query: 839 WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQ 1018
WKC+CTLSGFHSRTIYDVAWCQLTG LATACGDDAIRVFEEDPGSDPQQPTFSLTAH+PQ
Sbjct: 241 WKCVCTLSGFHSRTIYDVAWCQLTGTLATACGDDAIRVFEEDPGSDPQQPTFSLTAHVPQ 300
Query: 1019 AHPQDVNCVA*NPKEQG 1069
AH QDVNCVA NPKE+G
Sbjct: 301 AHSQDVNCVAWNPKERG 317
Score = 84.0 bits (206), Expect = 2e-16
Identities = 56/185 (30%), Positives = 86/185 (46%), Gaps = 21/185 (11%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+ W+P+ LLAS D +V+++ E D W+C + L EGH+ TV +A+ P G LAS S
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSD 214
Query: 362 DATTCIWKK-------------NKDDFECVTTLEG-HENEVKSVAWAP-SGNLLATCSRD 496
D T IW++ ++ ++CV TL G H + VAW +G L C D
Sbjct: 215 DRTVRIWRQYLPGNEQGVACSGSEASWKCVCTLSGFHSRTIYDVAWCQLTGTLATACGDD 274
Query: 497 KXXXXXXXXXXXXXXXXXXLNSH-----TQDVKHVLWHPSQE-LLASASYDDTVKLYREE 658
L +H +QDV V W+P + LLAS S D + ++ +
Sbjct: 275 AIRVFEEDPGSDPQQPTFSLTAHVPQAHSQDVNCVAWNPKERGLLASCSDDGELAFWKYQ 334
Query: 659 EDDWV 673
+ +
Sbjct: 335 PSEGI 339
>ref|NP_001179958.1| F-box-like/WD repeat-containing protein TBL1XR1 [Bos taurus].
Length = 514
Score = 108 bits (270), Expect = 8e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTSNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 2e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|XP_002684953.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 2
[Bos taurus].
Length = 376
Score = 108 bits (270), Expect = 8e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 93 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 148
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 149 DKTTIIWDAHTGEAKQLFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 208
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 209 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 265
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 266 PGTSNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 323
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 324 FDKCVHIW 331
Score = 73.2 bits (178), Expect = 4e-13
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 27/287 (9%)
Frame = +2
Query: 221 GGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTVRKVAWSPCGNYLASASFDA 367
G RIW +S + + + EG Q + V + W+ G LA+ S+D
Sbjct: 50 GAHTIARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDG 109
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
IW K D +TL H+ + ++ W GN + + DK
Sbjct: 110 FARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQLF 166
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
++ DV W S AS S D + + + +D + T +GH + V ++ +D
Sbjct: 167 PFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRPI--KTFQGHTNEVNAIKWD 220
Query: 728 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQL 907
P+G LASCSDD T++IW S C+ L H++ IY + W
Sbjct: 221 PTGNLLASCSDDMTLKIW---------------SMKQDNCVHDLQA-HNKEIYTIKWSP- 263
Query: 908 TG----------ALATACGDDAIRVFEEDPG------SDPQQPTFSL 1000
TG LA+A D +R+++ D G + Q+P +S+
Sbjct: 264 TGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSV 310
>ref|XP_002684952.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
[Bos taurus].
Length = 514
Score = 108 bits (270), Expect = 8e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQLFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTSNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 2e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQLFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQLFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|XP_002702503.1| PREDICTED: transducin (beta)-like 1 X-linked receptor 1 isoform 1
[Bos taurus].
Length = 376
Score = 108 bits (270), Expect = 8e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 93 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 148
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 149 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 208
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 209 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 265
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 266 PGTSNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 323
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 324 FDKCVHIW 331
Score = 73.2 bits (178), Expect = 4e-13
Identities = 72/287 (25%), Positives = 116/287 (40%), Gaps = 27/287 (9%)
Frame = +2
Query: 221 GGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTVRKVAWSPCGNYLASASFDA 367
G RIW +S + + + EG Q + V + W+ G LA+ S+D
Sbjct: 50 GAHTIARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGTLLATGSYDG 109
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
IW K D +TL H+ + ++ W GN + + DK
Sbjct: 110 FARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQF 166
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
++ DV W S AS S D + + + +D + T +GH + V ++ +D
Sbjct: 167 PFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRPI--KTFQGHTNEVNAIKWD 220
Query: 728 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQL 907
P+G LASCSDD T++IW S C+ L H++ IY + W
Sbjct: 221 PTGNLLASCSDDMTLKIW---------------SMKQDNCVHDLQA-HNKEIYTIKWSP- 263
Query: 908 TG----------ALATACGDDAIRVFEEDPG------SDPQQPTFSL 1000
TG LA+A D +R+++ D G + Q+P +S+
Sbjct: 264 TGPGTSNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSV 310
>ref|NP_001138704.1| F-box-like/WD repeat-containing protein TBL1X [Bos taurus].
Length = 528
Score = 107 bits (268), Expect = 1e-23
Identities = 80/248 (32%), Positives = 109/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 245 LDWNSDGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNKKGNYILSAGV 300
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 301 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 360
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 361 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHD---LQAHSKEIYTIKWSPTG 417
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 418 PATSNPNSSIMLASASFDSTVRLWDVERG--VCLHTLTKHQEPVYSVAFSPDGKYLASGS 475
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 476 FDKCVHIW 483
Score = 90.5 bits (223), Expect = 2e-18
Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 183 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 242
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 243 TSLDWNSDGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNKKGNYILSAG 299
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 300 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 355
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 356 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDTCV 398
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L HS+ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 399 HDLQA-HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVERGVCLHTLTKHQE 457
Query: 986 PTFSL 1000
P +S+
Sbjct: 458 PVYSV 462
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 334 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 390
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
+D CV L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 391 SMKQDT--CVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVERGVC 448
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + V G ++
Sbjct: 449 LHT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTG---GIFE 502
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 503 VCWNARGDKVGASASDGSV 521
Score = 57.0 bits (136), Expect = 3e-08
Identities = 58/226 (25%), Positives = 84/226 (37%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 177 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 236
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA+ SYD +++ E D +TL H+ +++L ++ G
Sbjct: 237 PSNKDVTSLDWNSDGTLLATGSYDGFARIWTE---DGNLASTLGQHKGPIFALKWNKKGN 293
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 294 YILSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNTTF 336
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 337 ASCSTDMCIHVCR--LGCDRPVKTF-------QGHTNEVNAIKWDP 373
>ref|NP_001069033.1| protein SEC13 homolog [Bos taurus].
Length = 322
Score = 96.3 bits (238), Expect = 4e-20
Identities = 82/280 (29%), Positives = 119/280 (42%), Gaps = 26/280 (9%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSP--CGNYLASASFDATT 373
GT LA+C DRSV+I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILVADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKXXXXXXXXXXXXXXXX 547
IWK+ +E GH++ V SV WAP G +LA S D
Sbjct: 84 IIWKEENGTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGLGQWEVK 143
Query: 548 XXLNSHTQDVKHVLWHPSQ-----------------ELLASASYDDTVKLYREEED-DWV 673
N+HT V W P+ + AS D+ +KL++EEED W
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWK 203
Query: 674 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSW 841
LE H V +A+ PS +ASCS D V +W C+ + +
Sbjct: 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFVW-----------TCDDASGNT 252
Query: 842 KCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEE 961
L F+ ++ V+W LA + GD+ + +++E
Sbjct: 253 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 291
Score = 50.4 bits (119), Expect = 3e-06
Identities = 64/245 (26%), Positives = 86/245 (35%), Gaps = 25/245 (10%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPS--G 469
H+ + G LA+ S D + I+ V L GHE V VAWA G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILVADLRGHEGPVWQVAWAHPMYG 71
Query: 470 NLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQE--LLASASYDDTVK 643
N+LA+CS D+ H V V W P +LA S D +
Sbjct: 72 NILASCSYDRKVIIWKEENGTWEKTHEH-TGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 644 LYR-----EEEDDWVCCATLEGHESTVW-------SLAFDPSGQ------RLASCSDDRT 769
L + E + A G + W SL PSGQ + AS D
Sbjct: 131 LLTYTGLGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNL 190
Query: 770 VRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG---ALATACGDD 940
+++W++ D WK L HS + DVAW G + +C D
Sbjct: 191 IKLWKE------------EEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQD 237
Query: 941 AIRVF 955
RVF
Sbjct: 238 G-RVF 241
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 92.4 bits (228), Expect = 6e-19
Identities = 63/201 (31%), Positives = 98/201 (48%)
Frame = +2
Query: 179 FLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
F ++P G L AS DR++R+W + C VL +GHQR+V V++S LAS
Sbjct: 68 FCRFSPDGRLFASTSCDRTIRLW--DATDAKCLQVL-KGHQRSVETVSFSHDSKQLASGG 124
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
+D +W+ + + GH + V+S +APS + LAT S D
Sbjct: 125 WDKRVMLWEVQSG--QVLRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPG 182
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L H ++ + + PS LLAS S+D T+ +++ + L+GH + V S+
Sbjct: 183 IFHQELEGHRGNISCLCYSPSG-LLASGSWDKTIHIWKPSTRSLLI--QLKGHITWVKSI 239
Query: 719 AFDPSGQRLASCSDDRTVRIW 781
AF P GQ+LAS V++W
Sbjct: 240 AFSPDGQQLASAGYSHMVKVW 260
Score = 74.7 bits (182), Expect = 1e-13
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 1/201 (0%)
Frame = +2
Query: 185 AWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFD 364
A++P G L + D V W + + + GH+ VR +SP G AS S D
Sbjct: 28 AFSPDGQRLLTASEDGCVYGWETQSGRLLWR---LRGHKGPVRFCRFSPDGRLFASTSCD 84
Query: 365 ATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXX 544
T +W + D +C+ L+GH+ V++V+++ LA+ DK
Sbjct: 85 RTIRLW--DATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRH 142
Query: 545 XXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLY-REEEDDWVCCATLEGHESTVWSLA 721
H V+ + PS + LA+ S+D T++++ + LEGH + L
Sbjct: 143 FV---GHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLC 199
Query: 722 FDPSGQRLASCSDDRTVRIWR 784
+ PSG LAS S D+T+ IW+
Sbjct: 200 YSPSG-LLASGSWDKTIHIWK 219
Score = 53.9 bits (128), Expect = 2e-07
Identities = 35/105 (33%), Positives = 55/105 (52%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L ++P+G LLAS D+++ IW S + + +GH V+ +A+SP G LASA +
Sbjct: 198 LCYSPSG-LLASGSWDKTIHIWKPSTRSLL---IQLKGHITWVKSIAFSPDGQQLASAGY 253
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 496
+W N +C TL+G N + A+ P G LL + + D
Sbjct: 254 SHMVKVWDCNTG--KCTETLKGVLNVAHACAFMPDGKLLVSGAVD 296
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 92.0 bits (227), Expect = 8e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SAS
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSASR 212
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 213 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 271 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 325
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 88.6 bits (218), Expect = 9e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 89 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 146
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 147 KGHTDSVEDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SAS D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 204 GDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 74.7 bits (182), Expect = 1e-13
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 20/218 (9%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P +++ S D ++++W E + +GH +V +++ G LAS S D
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVEDISFDHSGKLLASCSADM 172
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W + FEC+ T+ GH++ V SVA P+G+ + + SRDK
Sbjct: 173 TIKLW--DFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDK---TIKMWEVQTGYCV 227
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
H + V+ V + L+AS S D TV+++ + C A L HE V +++
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHEHVVECISWA 285
Query: 728 PS--------------------GQRLASCSDDRTVRIW 781
P G L S S D+T+++W
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 68.2 bits (165), Expect = 1e-11
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVEDISFDHS 161
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 162 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 205
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 206 HIVSASRDKTIKMWEVQTG 224
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 85.5 bits (210), Expect = 7e-17
Identities = 64/258 (24%), Positives = 113/258 (43%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L++NP TL+A+ D + ++W + + GH + ++++ GN + + SF
Sbjct: 183 LSFNPQSTLVATGSMDTTAKLWDIQSGEEV---FTLTGHSAEIISLSFNTSGNRIITGSF 239
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ D V TL GH E+ S + +L+ T S DK
Sbjct: 240 DHTVTVWEA--DTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVA 297
Query: 542 XXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 721
L H ++ + + +L+A+AS D T +++ + C LEGHE + ++
Sbjct: 298 T---LTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRE--CVTKLEGHEGEISKIS 352
Query: 722 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWC 901
F+P G RL + S D+T RIW + +C+ L G H+ I+ A+
Sbjct: 353 FNPQGNRLLTGSSDKTARIW---------------DAQTGQCLQVLEG-HTDEIFSCAFN 396
Query: 902 QLTGALATACGDDAIRVF 955
+ T D+ R++
Sbjct: 397 YKGDIIITGSKDNTCRIW 414
Score = 75.5 bits (184), Expect = 8e-14
Identities = 66/259 (25%), Positives = 114/259 (44%), Gaps = 1/259 (0%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWS-PCGNYLASAS 358
+A N +G+ + DR+ ++W + EGH+ V +A++ P G+ +A+ S
Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELHT---LEGHRNVVYAIAFNNPYGDKIATGS 154
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
FD T +W + + +C T GH E+ +++ P L+AT S D
Sbjct: 155 FDKTCKLW--SVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMD---TTAKLWDIQSG 209
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L H+ ++ + ++ S + + S+D TV ++ E D TL GH + + S
Sbjct: 210 EEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVW--EADTGRKVYTLIGHCAEISSA 267
Query: 719 AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAW 898
F+ + + S D+T ++W A NG KC+ TL+G H I D +
Sbjct: 268 VFNWDCSLILTGSMDKTCKLWD----------AVNG-----KCVATLTG-HDDEILDSCF 311
Query: 899 CQLTGALATACGDDAIRVF 955
+ATA D R+F
Sbjct: 312 DYTGKLIATASADGTARIF 330
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 44,716,262
Number of extensions: 1292992
Number of successful extensions: 6699
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 5777
Number of HSP's successfully gapped: 194
Length of query: 356
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 253
Effective length of database: 14,273,310
Effective search space: 3611147430
Effective search space used: 3611147430
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532950.2| PREDICTED: similar to WD-repeat protein 39 (Cia... 613 e-176
Alignment gi|XP_851760.1| PREDICTED: similar to WD-repeat protein 39 (Cia... 604 e-173
Alignment gi|XP_545299.2| PREDICTED: similar to nuclear receptor co-repre... 108 9e-24
Alignment gi|XP_850905.1| PREDICTED: similar to nuclear receptor co-repre... 108 9e-24
Alignment gi|XP_853719.1| PREDICTED: similar to transducin (beta)-like 1 ... 107 1e-23
Alignment gi|XP_850437.1| PREDICTED: similar to SEC13-like 1 isoform 1 [C... 96 4e-20
Alignment gi|XP_861408.1| PREDICTED: similar to SEC13-like 1 isoform 2 [C... 96 4e-20
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 92 8e-19
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 92 8e-19
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 92 8e-19
>ref|XP_532950.2| PREDICTED: similar to WD-repeat protein 39 (Ciao 1 protein) isoform 1
[Canis familiaris].
Length = 339
Score = 613 bits (1581), Expect = e-176
Identities = 287/317 (90%), Positives = 291/317 (91%)
Frame = +2
Query: 119 MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 298
MKDSLVLLGR+PAHPDSRCWFLAWNP GTLLASCGGDR VRIWG EGDSWICKSVL EGH
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGH 60
Query: 299 QRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLL 478
QRTVRKVAWSPCGNYLASASFDATTCIWKKN+DDFECVTTLEGHENEVKSVAWAPSGNLL
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 479 ATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREE 658
ATCSRDK LNSHTQDVKHV+WHPSQELLASASYDDTVKLYREE
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE 180
Query: 659 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPS 838
EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP NEQGVAC+GSDPS
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPDNEQGVACSGSDPS 240
Query: 839 WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQ 1018
WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDP SDPQQPTFSLTAHLPQ
Sbjct: 241 WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPSSDPQQPTFSLTAHLPQ 300
Query: 1019 AHPQDVNCVA*NPKEQG 1069
AH QDVNCVA NPKEQG
Sbjct: 301 AHSQDVNCVAWNPKEQG 317
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+ W+P+ LLAS D +V+++ E D W+C + L EGH+ TV +A+ P G LAS S
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSD 214
Query: 362 DATTCIWKKNKDDFE-------------CVTTLEG-HENEVKSVAWAPSGNLLAT-CSRD 496
D T IW++ D E C+ TL G H + VAW LAT C D
Sbjct: 215 DRTVRIWRQYLPDNEQGVACSGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDD 274
Query: 497 KXXXXXXXXXXXXXXXXXXLNSH-----TQDVKHVLWHPSQE-LLASASYDDTVKLYREE 658
L +H +QDV V W+P ++ LLAS S D V ++ +
Sbjct: 275 AIRVFEEDPSSDPQQPTFSLTAHLPQAHSQDVNCVAWNPKEQGLLASCSDDGEVAFWKYQ 334
Query: 659 EDDWV 673
+ +
Sbjct: 335 RPEGI 339
>ref|XP_851760.1| PREDICTED: similar to WD-repeat protein 39 (Ciao 1 protein) isoform 2
[Canis familiaris].
Length = 351
Score = 604 bits (1558), Expect = e-173
Identities = 287/329 (87%), Positives = 291/329 (88%), Gaps = 12/329 (3%)
Frame = +2
Query: 119 MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 298
MKDSLVLLGR+PAHPDSRCWFLAWNP GTLLASCGGDR VRIWG EGDSWICKSVL EGH
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPTGTLLASCGGDRRVRIWGTEGDSWICKSVLSEGH 60
Query: 299 QRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLL 478
QRTVRKVAWSPCGNYLASASFDATTCIWKKN+DDFECVTTLEGHENEVKSVAWAPSGNLL
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 479 ATCSRDKXXXXXXXXXXXXXXXXXX------------LNSHTQDVKHVLWHPSQELLASA 622
ATCSRDK LNSHTQDVKHV+WHPSQELLASA
Sbjct: 121 ATCSRDKSVWVWEGESKSISMELGTIDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASA 180
Query: 623 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 802
SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP N
Sbjct: 181 SYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPDN 240
Query: 803 EQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQ 982
EQGVAC+GSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDP SDPQ
Sbjct: 241 EQGVACSGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPSSDPQ 300
Query: 983 QPTFSLTAHLPQAHPQDVNCVA*NPKEQG 1069
QPTFSLTAHLPQAH QDVNCVA NPKEQG
Sbjct: 301 QPTFSLTAHLPQAHSQDVNCVAWNPKEQG 329
Score = 85.1 bits (209), Expect = 1e-16
Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+ W+P+ LLAS D +V+++ E D W+C + L EGH+ TV +A+ P G LAS S
Sbjct: 168 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSD 226
Query: 362 DATTCIWKKNKDDFE-------------CVTTLEG-HENEVKSVAWAPSGNLLAT-CSRD 496
D T IW++ D E C+ TL G H + VAW LAT C D
Sbjct: 227 DRTVRIWRQYLPDNEQGVACSGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDD 286
Query: 497 KXXXXXXXXXXXXXXXXXXLNSH-----TQDVKHVLWHPSQE-LLASASYDDTVKLYREE 658
L +H +QDV V W+P ++ LLAS S D V ++ +
Sbjct: 287 AIRVFEEDPSSDPQQPTFSLTAHLPQAHSQDVNCVAWNPKEQGLLASCSDDGEVAFWKYQ 346
Query: 659 EDDWV 673
+ +
Sbjct: 347 RPEGI 351
>ref|XP_545299.2| PREDICTED: similar to nuclear receptor co-repressor/HDAC3 complex
subunit isoform 1 [Canis familiaris].
Length = 514
Score = 108 bits (270), Expect = 9e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTNNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 2e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|XP_850905.1| PREDICTED: similar to nuclear receptor co-repressor/HDAC3 complex
subunit isoform 2 [Canis familiaris].
Length = 514
Score = 108 bits (270), Expect = 9e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTNNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 2e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|XP_853719.1| PREDICTED: similar to transducin (beta)-like 1 X-linked [Canis
familiaris].
Length = 630
Score = 107 bits (268), Expect = 1e-23
Identities = 80/248 (32%), Positives = 109/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 347 LDWNSDGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNKKGNYILSAGV 402
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 403 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 462
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 463 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHD---LQAHSKEIYTIKWSPTG 519
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 520 PATSNPNSNIMLASASFDSTVRLWDVERG--VCIHTLTKHQEPVYSVAFSPDGKYLASGS 577
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 578 FDKCVHIW 585
Score = 90.5 bits (223), Expect = 2e-18
Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 285 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 344
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 345 TSLDWNSDGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNKKGNYILSAG 401
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 402 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 457
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 458 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDTCV 500
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L HS+ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 501 HDLQA-HSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQE 559
Query: 986 PTFSL 1000
P +S+
Sbjct: 560 PVYSV 564
Score = 62.8 bits (151), Expect = 5e-10
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 436 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 492
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
+D CV L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 493 SMKQDT--CVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVC 550
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + V G ++
Sbjct: 551 IHT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTG---GIFE 604
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 605 VCWNARGDKVGASASDGSV 623
Score = 57.0 bits (136), Expect = 3e-08
Identities = 58/226 (25%), Positives = 84/226 (37%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 279 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 338
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA+ SYD +++ E D +TL H+ +++L ++ G
Sbjct: 339 PSNKDVTSLDWNSDGTLLATGSYDGFARIWTE---DGNLASTLGQHKGPIFALKWNKKGN 395
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 396 YILSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNTTF 438
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 439 ASCSTDMCIHVCR--LGCDRPVKTF-------QGHTNEVNAIKWDP 475
>ref|XP_850437.1| PREDICTED: similar to SEC13-like 1 isoform 1 [Canis familiaris].
Length = 322
Score = 96.3 bits (238), Expect = 4e-20
Identities = 83/280 (29%), Positives = 119/280 (42%), Gaps = 26/280 (9%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSP--CGNYLASASFDATT 373
GT LA+C DRSV+I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKXXXXXXXXXXXXXXXX 547
IWK+ +E GH++ V SV WAP G +LA S D
Sbjct: 84 IIWKEENGTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 548 XXLNSHTQDVKHVLWHPSQ-----------------ELLASASYDDTVKLYREEED-DWV 673
N+HT V W P+ + AS D+ +KL++EEED W
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWK 203
Query: 674 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSW 841
LE H V +A+ PS +ASCS D V IW C+ + +
Sbjct: 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----------TCDDTSGNT 252
Query: 842 KCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEE 961
L F+ ++ V+W LA + GD+ + +++E
Sbjct: 253 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 291
Score = 51.6 bits (122), Expect = 1e-06
Identities = 64/245 (26%), Positives = 86/245 (35%), Gaps = 25/245 (10%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPS--G 469
H+ + G LA+ S D + I+ + L GHE V VAWA G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 470 NLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQE--LLASASYDDTVK 643
N+LA+CS D+ H V V W P +LA S D +
Sbjct: 72 NILASCSYDRKVIIWKEENGTWEKTHEH-TGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 644 LYR-EEEDDW----VCCATLEGHESTVW-------SLAFDPSGQ------RLASCSDDRT 769
L E W + A G + W SL PSGQ + AS D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNL 190
Query: 770 VRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG---ALATACGDD 940
+++W++ D WK L HS + DVAW G + +C D
Sbjct: 191 IKLWKE------------EEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQD 237
Query: 941 AIRVF 955
RVF
Sbjct: 238 G-RVF 241
>ref|XP_861408.1| PREDICTED: similar to SEC13-like 1 isoform 2 [Canis familiaris].
Length = 308
Score = 96.3 bits (238), Expect = 4e-20
Identities = 83/280 (29%), Positives = 119/280 (42%), Gaps = 26/280 (9%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSP--CGNYLASASFDATT 373
GT LA+C DRSV+I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 11 GTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKXXXXXXXXXXXXXXXX 547
IWK+ +E GH++ V SV WAP G +LA S D
Sbjct: 70 IIWKEENGTWEKTHEHTGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 129
Query: 548 XXLNSHTQDVKHVLWHPSQ-----------------ELLASASYDDTVKLYREEED-DWV 673
N+HT V W P+ + AS D+ +KL++EEED W
Sbjct: 130 KINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWKEEEDGQWK 189
Query: 674 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSW 841
LE H V +A+ PS +ASCS D V IW C+ + +
Sbjct: 190 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----------TCDDTSGNT 238
Query: 842 KCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEE 961
L F+ ++ V+W LA + GD+ + +++E
Sbjct: 239 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 277
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 1 [Canis familiaris].
Length = 372
Score = 92.0 bits (227), Expect = 8e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SAS
Sbjct: 118 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSASR 174
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 175 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 232
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 233 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 287
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 288 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 327
Score = 88.6 bits (218), Expect = 9e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 51 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 108
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 109 KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 165
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SAS D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 166 GDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 223
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P +++ S D ++++W E + +GH +V+ +++ G LAS S D
Sbjct: 78 FHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADM 134
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W + FEC+ T+ GH++ V SVA P+G+ + + SRDK
Sbjct: 135 TIKLW--DFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDK---TIKMWEVQTGYCV 189
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
H + V+ V + L+AS S D TV+++ + C A L HE V +++
Sbjct: 190 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHEHVVECISWA 247
Query: 728 PS--------------------GQRLASCSDDRTVRIW 781
P G L S S D+T+++W
Sbjct: 248 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 285
Score = 68.6 bits (166), Expect = 1e-11
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 66 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHS 123
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 124 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 167
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 168 HIVSASRDKTIKMWEVQTG 186
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 2 [Canis familiaris].
Length = 410
Score = 92.0 bits (227), Expect = 8e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SAS
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSASR 212
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 213 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 271 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 325
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 88.6 bits (218), Expect = 9e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 89 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 146
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SAS D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 204 GDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P +++ S D ++++W E + +GH +V+ +++ G LAS S D
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADM 172
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W + FEC+ T+ GH++ V SVA P+G+ + + SRDK
Sbjct: 173 TIKLW--DFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDK---TIKMWEVQTGYCV 227
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
H + V+ V + L+AS S D TV+++ + C A L HE V +++
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHEHVVECISWA 285
Query: 728 PS--------------------GQRLASCSDDRTVRIW 781
P G L S S D+T+++W
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 68.6 bits (166), Expect = 1e-11
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHS 161
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 162 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 205
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 206 HIVSASRDKTIKMWEVQTG 224
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
beta subunit isoform 3 [Canis familiaris].
Length = 345
Score = 92.0 bits (227), Expect = 8e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SAS
Sbjct: 91 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSASR 147
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 148 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 205
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 206 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 260
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 261 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 300
Score = 88.6 bits (218), Expect = 9e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 24 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 81
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 82 KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 138
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SAS D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 139 GDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 196
Score = 75.1 bits (183), Expect = 1e-13
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P +++ S D ++++W E + +GH +V+ +++ G LAS S D
Sbjct: 51 FHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADM 107
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W + FEC+ T+ GH++ V SVA P+G+ + + SRDK
Sbjct: 108 TIKLW--DFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDK---TIKMWEVQTGYCV 162
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
H + V+ V + L+AS S D TV+++ + C A L HE V +++
Sbjct: 163 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHEHVVECISWA 220
Query: 728 PS--------------------GQRLASCSDDRTVRIW 781
P G L S S D+T+++W
Sbjct: 221 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 258
Score = 68.6 bits (166), Expect = 1e-11
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 39 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHS 96
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 97 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 140
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 141 HIVSASRDKTIKMWEVQTG 159
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 46,515,779
Number of extensions: 1326192
Number of successful extensions: 7278
Number of sequences better than 1.0e-05: 125
Number of HSP's gapped: 6188
Number of HSP's successfully gapped: 227
Length of query: 356
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 252
Effective length of database: 15,407,560
Effective search space: 3882705120
Effective search space used: 3882705120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p... 107 9e-24
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 91 1e-18
Alignment gi|XP_003132590.2| PREDICTED: f-box-like/WD repeat-containing p... 89 3e-18
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 89 3e-18
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 89 3e-18
Alignment gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ... 84 1e-16
Alignment gi|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A... 78 1e-14
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 77 2e-14
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 75 8e-14
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 74 1e-13
>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
scrofa].
Length = 529
Score = 107 bits (268), Expect = 9e-24
Identities = 80/248 (32%), Positives = 109/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 246 LDWNSDGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNKKGNYILSAGV 301
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 302 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 361
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 362 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHD---LQAHSKEIYTIKWSPTG 418
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 419 PATSNPNSNIMLASASFDSTVRLWDVERG--VCIHTLTKHQEPVYSVAFSPDGKYLASGS 476
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 477 FDKCVHIW 484
Score = 90.5 bits (223), Expect = 1e-18
Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 184 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 243
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 244 TSLDWNSDGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNKKGNYILSAG 300
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 301 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 356
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 357 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDTCV 399
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L HS+ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 400 HDLQA-HSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQE 458
Query: 986 PTFSL 1000
P +S+
Sbjct: 459 PVYSV 463
Score = 62.8 bits (151), Expect = 3e-10
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 335 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 391
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
+D CV L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 392 SMKQDT--CVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVC 449
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + V G ++
Sbjct: 450 IHT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTG---GIFE 503
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 504 VCWNARGDKVGASASDGSV 522
Score = 57.0 bits (136), Expect = 2e-08
Identities = 58/226 (25%), Positives = 84/226 (37%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 178 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 237
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA+ SYD +++ E D +TL H+ +++L ++ G
Sbjct: 238 PSNKDVTSLDWNSDGTLLATGSYDGFARIWTE---DGNLASTLGQHKGPIFALKWNKKGN 294
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 295 YILSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNTTF 337
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 338 ASCSTDMCIHVCR--LGCDRPVKTF-------QGHTNEVNAIKWDP 374
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 90.9 bits (224), Expect = 1e-18
Identities = 61/220 (27%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SA+
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSAAR 212
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 213 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 271 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 325
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 87.4 bits (215), Expect = 1e-17
Identities = 56/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 89 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 146
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SA+ D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 204 GDHIVSAARDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 68.9 bits (167), Expect = 4e-12
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHS 161
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 162 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 205
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 206 HIVSAARDKTIKMWEVQTG 224
Score = 67.0 bits (162), Expect = 2e-11
Identities = 57/216 (26%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Frame = +2
Query: 194 PAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATT 373
P G + S D+++++W E + C GH+ VR V + G +AS S D T
Sbjct: 202 PNGDHIVSAARDKTIKMW--EVQTGYCVKTFT-GHREWVRMVRPNQDGTLIASCSNDQTV 258
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--------------------GNLLATCSR 493
+W EC L HE+ V+ ++WAP G L + SR
Sbjct: 259 RVWVVATK--ECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 494 DKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWV 673
DK L H V+ VL+H + + S + D T++++ +
Sbjct: 317 DKTIKMWDVSTGMCLMT---LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR-- 371
Query: 674 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
C TL HE V SL F + + + S D+TV++W
Sbjct: 372 CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
>ref|XP_003132590.2| PREDICTED: f-box-like/WD repeat-containing protein TBL1XR1-like
[Sus scrofa].
Length = 544
Score = 89.4 bits (220), Expect = 3e-18
Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 11/256 (4%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 201 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 260
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 261 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 317
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 318 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 373
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 374 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 416
Query: 851 CTLSGFHSRTIYDVAW 898
L H++ IY + W
Sbjct: 417 HDLQA-HNKEIYTIKW 431
Score = 58.5 bits (140), Expect = 6e-09
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 38/134 (28%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 304 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 363
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 364 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 421
Query: 428 HENEVKSVAWAPSG 469
H E+ ++ W+P+G
Sbjct: 422 HNKEIYTIKWSPTG 435
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 89.4 bits (220), Expect = 3e-18
Identities = 62/201 (30%), Positives = 97/201 (48%)
Frame = +2
Query: 179 FLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
F ++P G L AS D ++R+W + C VL +GHQR+V V++SP LAS
Sbjct: 68 FCRFSPDGRLFASTSSDCTIRLW--DVAKVECLQVL-KGHQRSVETVSFSPDSKQLASGG 124
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
+D +W+ + + L GH + ++S +APS + LAT S D
Sbjct: 125 WDKRVMLWEVQSG--QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGA 182
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L H ++ L + LLAS S+D T+ +++ + L+GH + V S+
Sbjct: 183 IFHQELEGHRGNIS-CLCFSAFGLLASGSWDKTIHIWKPSTRSLL--VQLKGHVTWVKSI 239
Query: 719 AFDPSGQRLASCSDDRTVRIW 781
AF P G +LAS TV++W
Sbjct: 240 AFSPDGLQLASAGYSHTVKVW 260
Score = 71.2 bits (173), Expect = 9e-13
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P G L + D V W + + K GH V+ +SP G AS S D
Sbjct: 29 FSPDGQRLLTASEDGCVYGWETQSGRLLWK---LGGHTGPVKFCRFSPDGRLFASTSSDC 85
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W K EC+ L+GH+ V++V+++P LA+ DK
Sbjct: 86 TIRLWDVAK--VECLQVLKGHQRSVETVSFSPDSKQLASGGWDK---RVMLWEVQSGQVL 140
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLY-REEEDDWVCCATLEGHESTVWSLAF 724
L H ++ + PS + LA+ S+D T++++ + LEGH + L F
Sbjct: 141 RHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF 200
Query: 725 DPSGQRLASCSDDRTVRIWR 784
G LAS S D+T+ IW+
Sbjct: 201 SAFG-LLASGSWDKTIHIWK 219
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/98 (34%), Positives = 50/98 (51%)
Frame = +2
Query: 206 LLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 385
LLAS D+++ IW S + V +GH V+ +A+SP G LASA + T +W
Sbjct: 205 LLASGSWDKTIHIWKPSTRSLL---VQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD 261
Query: 386 KNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 499
N C TL+G + S A+ P G LL + + D+
Sbjct: 262 CNTG--RCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 297
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 89.4 bits (220), Expect = 3e-18
Identities = 62/201 (30%), Positives = 97/201 (48%)
Frame = +2
Query: 179 FLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
F ++P G L AS D ++R+W + C VL +GHQR+V V++SP LAS
Sbjct: 68 FCRFSPDGRLFASTSSDCTIRLW--DVAKVECLQVL-KGHQRSVETVSFSPDSKQLASGG 124
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
+D +W+ + + L GH + ++S +APS + LAT S D
Sbjct: 125 WDKRVMLWEVQSG--QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGA 182
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L H ++ L + LLAS S+D T+ +++ + L+GH + V S+
Sbjct: 183 IFHQELEGHRGNIS-CLCFSAFGLLASGSWDKTIHIWKPSTRSLL--VQLKGHVTWVKSI 239
Query: 719 AFDPSGQRLASCSDDRTVRIW 781
AF P G +LAS TV++W
Sbjct: 240 AFSPDGLQLASAGYSHTVKVW 260
Score = 71.2 bits (173), Expect = 9e-13
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P G L + D V W + + K GH V+ +SP G AS S D
Sbjct: 29 FSPDGQRLLTASEDGCVYGWETQSGRLLWK---LGGHTGPVKFCRFSPDGRLFASTSSDC 85
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W K EC+ L+GH+ V++V+++P LA+ DK
Sbjct: 86 TIRLWDVAK--VECLQVLKGHQRSVETVSFSPDSKQLASGGWDK---RVMLWEVQSGQVL 140
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLY-REEEDDWVCCATLEGHESTVWSLAF 724
L H ++ + PS + LA+ S+D T++++ + LEGH + L F
Sbjct: 141 RHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF 200
Query: 725 DPSGQRLASCSDDRTVRIWR 784
G LAS S D+T+ IW+
Sbjct: 201 SAFG-LLASGSWDKTIHIWK 219
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/98 (34%), Positives = 50/98 (51%)
Frame = +2
Query: 206 LLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 385
LLAS D+++ IW S + V +GH V+ +A+SP G LASA + T +W
Sbjct: 205 LLASGSWDKTIHIWKPSTRSLL---VQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD 261
Query: 386 KNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 499
N C TL+G + S A+ P G LL + + D+
Sbjct: 262 CNTG--RCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 297
>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear
ribonucleoprotein Prp4-like [Sus scrofa].
Length = 506
Score = 84.3 bits (207), Expect = 1e-16
Identities = 58/199 (29%), Positives = 86/199 (43%), Gaps = 1/199 (0%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
W+P+G L + DRS R+W E I EGH V +A+ G+ + DA
Sbjct: 315 WHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ---EGHSMGVYDIAFHQDGSLAGTGGLDA 371
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
+W C+ LEGH E+ + ++P+G +AT S D
Sbjct: 372 FGRVWDLRTG--RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYT- 428
Query: 548 XXLNSHTQDVKHVLWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 724
+ +H V V + P L + +YD+T K++ W TL GHE V L
Sbjct: 429 --IPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHP--GWSPLKTLAGHEGKVMGLDI 484
Query: 725 DPSGQRLASCSDDRTVRIW 781
GQ +A+CS DRT ++W
Sbjct: 485 SSDGQLIATCSYDRTFKLW 503
Score = 51.2 bits (121), Expect = 1e-06
Identities = 49/222 (22%), Positives = 80/222 (36%)
Frame = +2
Query: 293 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGN 472
G R + +SP LA+A + +W + D + TL GH V ++
Sbjct: 244 GDDRPISYCHFSPNSKMLATACWSGLCKLW--SVPDCNLLHTLRGHNTNVGAIE------ 295
Query: 473 LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYR 652
+ HT V V+WHPS L + YD + +L+
Sbjct: 296 --------------------SDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWD 335
Query: 653 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSD 832
E + + EGH V+ +AF G + D R+W
Sbjct: 336 LEAQEEI--LHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVW---------------DL 378
Query: 833 PSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFE 958
+ +CI L G H + IY + + +AT GD+ +V++
Sbjct: 379 RTGRCIMFLEG-HLKEIYGINFSPNGYHIATGSGDNTCKVWD 419
>ref|XP_003132294.2| PREDICTED: POC1 centriolar protein homolog A-like [Sus scrofa].
Length = 344
Score = 77.8 bits (190), Expect = 1e-14
Identities = 60/199 (30%), Positives = 96/199 (48%), Gaps = 2/199 (1%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIW--GREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++P+G LLAS D++VRIW +G+S + ++ H TVR V + G +AS
Sbjct: 69 FSPSGHLLASGSRDKTVRIWVPNIKGESTVFRA-----HTATVRSVHFCSDGQSFVTASD 123
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W ++ F + +L H N V+ ++P G L+ + S DK
Sbjct: 124 DKTIKVWSTHRQKF--LFSLSQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECVH 181
Query: 542 XXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 721
H V +V +HPS +A+A D+TVK++ + L H + V +L+
Sbjct: 182 SYC---EHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQL--HSAAVNALS 236
Query: 722 FDPSGQRLASCSDDRTVRI 778
F PSG L + S D T++I
Sbjct: 237 FHPSGNYLVTASSDSTLKI 255
Score = 67.4 bits (163), Expect = 1e-11
Identities = 51/195 (26%), Positives = 79/195 (40%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCI 379
G + D+++++W ++ H VR +SP G + SAS D T +
Sbjct: 115 GQSFVTASDDKTIKVWSTHRQKFLFS---LSQHINWVRCAKFSPDGRLIVSASDDKTVKL 171
Query: 380 WKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLN 559
W K ECV + H V V + PSG +A D
Sbjct: 172 WDKTSR--ECVHSYCEHGGFVTYVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQL-- 227
Query: 560 SHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
H+ V + +HPS L +AS D T+K+ E + TL GH+ ++AF +G+
Sbjct: 228 -HSAAVNALSFHPSGNYLVTASSDSTLKILDLMEGRLLY--TLHGHQGPATTVAFSRTGE 284
Query: 740 RLASCSDDRTVRIWR 784
AS D V +W+
Sbjct: 285 YFASGGSDEQVMVWK 299
Score = 65.1 bits (157), Expect = 6e-11
Identities = 48/164 (29%), Positives = 76/164 (46%)
Frame = +2
Query: 290 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSG 469
+GH+ V V +S LAS S D+ +W T GH++ V V ++PSG
Sbjct: 16 KGHRDAVTCVDFSFNMKQLASGSMDSCLMVWHMKPQSRAYRFT--GHKDAVTCVNFSPSG 73
Query: 470 NLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLY 649
+LLA+ SRDK +HT V+ V + + +AS D T+K++
Sbjct: 74 HLLASGSRDKTVRIWVPNIKGESTV---FRAHTATVRSVHFCSDGQSFVTASDDKTIKVW 130
Query: 650 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
++ +L H + V F P G+ + S SDD+TV++W
Sbjct: 131 STHRQKFLF--SLSQHINWVRCAKFSPDGRLIVSASDDKTVKLW 172
Score = 49.3 bits (116), Expect = 4e-06
Identities = 30/107 (28%), Positives = 56/107 (52%)
Frame = +2
Query: 179 FLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
++ ++P+GT +A+ G D +V++W + L H V +++ P GNYL +AS
Sbjct: 192 YVDFHPSGTCVAAAGMDNTVKVWDVRTHRLLQHYQL---HSAAVNALSFHPSGNYLVTAS 248
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK 499
D+T I + + + TL GH+ +VA++ +G A+ D+
Sbjct: 249 SDSTLKI--LDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDE 293
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 77.0 bits (188), Expect = 2e-14
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 1/199 (0%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P G LAS D+ ++IWG D K++ GH+ + VAWS N L SAS D
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAY-DGKFEKTI--SGHKLGISDVAWSSDSNLLVSASDDK 109
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T IW + +C+ TL+GH N V + P NL+ + S D+
Sbjct: 110 TLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE---SVRIWDVKTGKCL 164
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAF 724
L +H+ V V ++ L+ S+SYD +++ + C TL + V + F
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFVKF 222
Query: 725 DPSGQRLASCSDDRTVRIW 781
P+G+ + + + D T+++W
Sbjct: 223 SPNGKYILAATLDNTLKLW 241
Score = 75.9 bits (185), Expect = 4e-14
Identities = 50/163 (30%), Positives = 74/163 (45%)
Frame = +2
Query: 293 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGN 472
GH + V V +SP G +LAS+S D IW FE T+ GH+ + VAW+ N
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--KTISGHKLGISDVAWSSDSN 100
Query: 473 LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYR 652
LL + S DK L H+ V ++P L+ S S+D++V+++
Sbjct: 101 LLVSASDDK---TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 653 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ C TL H V ++ F+ G + S S D RIW
Sbjct: 157 -DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 67.8 bits (164), Expect = 1e-11
Identities = 60/244 (24%), Positives = 106/244 (43%), Gaps = 10/244 (4%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+AW+ LL S D++++IW + S C L +GH V ++P N + S SF
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTL-KGHSNYVFCCNFNPQSNLIVSGSF 149
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D + IW +C+ TL H + V +V + G+L+ + S D
Sbjct: 150 DESVRIWDVKTG--KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD--GLCRIWDTASGQC 205
Query: 542 XXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLA 721
++ V V + P+ + + +A+ D+T+KL+ + C T GH++ + +
Sbjct: 206 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYSKGKCLKTYTGHKNEKYCIF 263
Query: 722 FDPS---GQRLASCSDDRTVRIWR-------QYLPGNEQGVACNGSDPSWKCICTLSGFH 871
+ S G+ + S S+D V IW Q L G+ V P+ I + + +
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALEN 323
Query: 872 SRTI 883
+TI
Sbjct: 324 DKTI 327
Score = 65.9 bits (159), Expect = 4e-11
Identities = 41/130 (31%), Positives = 60/130 (46%)
Frame = +2
Query: 392 KDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQ 571
K ++ TL GH V SV ++P+G LA+ S DK ++ H
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT---ISGHKL 88
Query: 572 DVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 751
+ V W LL SAS D T+K++ + C TL+GH + V+ F+P + S
Sbjct: 89 GISDVAWSSDSNLLVSASDDKTLKIW--DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVS 146
Query: 752 CSDDRTVRIW 781
S D +VRIW
Sbjct: 147 GSFDESVRIW 156
Score = 57.0 bits (136), Expect = 2e-08
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Frame = +2
Query: 140 LGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKV 319
L +PAH D + +N G+L+ S D RIW + S C L + V V
Sbjct: 164 LKTLPAHSDPVS-AVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDNPPVSFV 220
Query: 320 AWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENE---VKSVAWAPSGNLLATCS 490
+SP G Y+ +A+ D T +W +K +C+ T GH+NE + + G + + S
Sbjct: 221 KFSPNGKYILAATLDNTLKLWDYSKG--KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGS 278
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASY--DDTVKLYREE 658
D L HT V HP++ ++ASA+ D T+KL++ +
Sbjct: 279 EDN---LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 48.5 bits (114), Expect = 6e-06
Identities = 31/96 (32%), Positives = 45/96 (46%)
Frame = +2
Query: 683 TLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLS 862
TL GH V S+ F P+G+ LAS S D+ ++IW Y K T+S
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---------------DGKFEKTIS 84
Query: 863 GFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPG 970
G H I DVAW + L +A D +++++ G
Sbjct: 85 G-HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 119
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 74.7 bits (182), Expect = 8e-14
Identities = 59/191 (30%), Positives = 79/191 (41%)
Frame = +2
Query: 209 LASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 388
L SC D S+R W +VL +GH V V SP Y AS S D T +W
Sbjct: 357 LLSCSEDMSIRYWDLGS---FTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLW-- 411
Query: 389 NKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHT 568
+ D + GH +V V + P+ N LAT S DK H
Sbjct: 412 SFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDK---TVRLWSAQQGNSVRLFTGHR 468
Query: 569 QDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 748
V + + P+ + LASA D +KL+ + L GH + SL F P +A
Sbjct: 469 GPVLSLAFSPNGKYLASAGEDQRLKLW--DLASGTLFKELRGHTDNITSLTFSPDSSLIA 526
Query: 749 SCSDDRTVRIW 781
S S D +VR+W
Sbjct: 527 SASMDNSVRVW 537
Score = 63.5 bits (153), Expect = 2e-10
Identities = 47/176 (26%), Positives = 78/176 (44%)
Frame = +2
Query: 176 WFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASA 355
W + +P AS DR+ R+W + + + GH V V + P NYLA+
Sbjct: 388 WDVDISPYSLYFASGSHDRTARLWSFDRTYPL---RIYAGHLADVDCVKFHPNSNYLATG 444
Query: 356 SFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXX 535
S D T +W + + V GH V S+A++P+G LA+ D+
Sbjct: 445 STDKTVRLWSAQQGN--SVRLFTGHRGPVLSLAFSPNGKYLASAGEDQ---RLKLWDLAS 499
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 703
L HT ++ + + P L+ASAS D++V+++ + + C A +G S
Sbjct: 500 GTLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVW--DIRNTHCSAPTDGSSS 553
Score = 58.5 bits (140), Expect = 6e-09
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 7/207 (3%)
Frame = +2
Query: 293 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGN 472
GH V + + L S S D + W + F +GH V V +P
Sbjct: 340 GHCGPVYSTRFLADSSGLLSCSEDMSIRYW--DLGSFTNTVLYQGHAYPVWDVDISPYSL 397
Query: 473 LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYR 652
A+ S D+ H DV V +HP+ LA+ S D TV+L+
Sbjct: 398 YFASGSHDRTARLWSFDRTYPLRIYA---GHLADVDCVKFHPNSNYLATGSTDKTVRLWS 454
Query: 653 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR-------QYLPGNEQG 811
++ + V T GH V SLAF P+G+ LAS +D+ +++W + L G+
Sbjct: 455 AQQGNSVRLFT--GHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTDN 512
Query: 812 VACNGSDPSWKCICTLSGFHSRTIYDV 892
+ P I + S +S ++D+
Sbjct: 513 ITSLTFSPDSSLIASASMDNSVRVWDI 539
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 74.3 bits (181), Expect = 1e-13
Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 5/185 (2%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+A++P G LAS GD +VR W ++ C+GH+ V ++WSP G LAS
Sbjct: 120 VAFSPTGKYLASGSGDTTVRFWDLSTET---PHFTCQGHRHWVLSISWSPDGKKLASGCK 176
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWA-----PSGNLLATCSRDKXXXXXXXXX 526
+ +W + + L GH + +++W P +A+ S+D
Sbjct: 177 NGQILLWDPSTGK-QVGRALAGHSKWITALSWEPLHANPECRYVASSSKD---GSVRVWD 232
Query: 527 XXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 706
L HTQ V + W LL SAS D T+K++R D V C TL+GH
Sbjct: 233 TTAGRCERILTGHTQSVTCLRW-GGDGLLYSASQDRTIKVWRAH--DGVLCRTLQGHGHW 289
Query: 707 VWSLA 721
V ++A
Sbjct: 290 VNTMA 294
Score = 73.2 bits (178), Expect = 2e-13
Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 7/190 (3%)
Frame = +2
Query: 272 CKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKD--DFECVTTLEGHENEVK 445
C S L EGH V VA+SP G YLAS S D T W + + F C +GH + V
Sbjct: 106 CTSSL-EGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTC----QGHRHWVL 160
Query: 446 SVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLW-----HPSQEL 610
S++W+P G LA S K L H++ + + W +P
Sbjct: 161 SISWSPDGKKLA--SGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRY 218
Query: 611 LASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 790
+AS+S D +V+++ + C L GH +V L + G L S S DRT+++WR +
Sbjct: 219 VASSSKDGSVRVW--DTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAH 275
Query: 791 LPGNEQGVAC 820
GV C
Sbjct: 276 -----DGVLC 280
Score = 68.6 bits (166), Expect = 6e-12
Identities = 59/242 (24%), Positives = 94/242 (38%), Gaps = 40/242 (16%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH---------QRTVRKVAWSPC 334
L W G LL S DR++++W R D +C+++ GH +R A+ P
Sbjct: 252 LRWGGDG-LLYSASQDRTIKVW-RAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPA 309
Query: 335 G-------------------------------NYLASASFDATTCIWKKNKDDFECVTTL 421
L S S D T +W +D + + +
Sbjct: 310 EASVNAQDLRGSLQELKERALSRYNLVRGRGLERLVSGSDDFTLFLWSPAEDK-KPLARM 368
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
GH+ + V ++P ++A+ S DK L H V + W
Sbjct: 369 TGHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLAS---LRGHVAAVYQIAWSAD 425
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
LL S S D T+K++ + A L GH V+++ + P GQR+AS D+ +RIW
Sbjct: 426 SRLLVSGSSDSTLKVWDVKAQK--LAADLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483
Query: 782 RQ 787
R+
Sbjct: 484 RR 485
Score = 58.5 bits (140), Expect = 6e-09
Identities = 36/129 (27%), Positives = 58/129 (44%)
Frame = +2
Query: 113 AAMKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCE 292
A M L+ ++ PDSR ++AS D+S+++W ++
Sbjct: 366 ARMTGHQALINQVLFSPDSR-----------IIASASFDKSIKLWDGRTGKYLAS---LR 411
Query: 293 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGN 472
GH V ++AWS L S S D+T +W + L GH +EV +V W+P G
Sbjct: 412 GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQ--KLAADLPGHADEVYAVDWSPDGQ 469
Query: 473 LLATCSRDK 499
+A+ +DK
Sbjct: 470 RVASGGKDK 478
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,885,927
Number of extensions: 833961
Number of successful extensions: 4624
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 4066
Number of HSP's successfully gapped: 138
Length of query: 356
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,854,232
Effective search space: 2266683392
Effective search space used: 2266683392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079572.2| probable cytosolic iron-sulfur protein assembly... 600 e-172
Alignment gi|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1... 108 7e-24
Alignment gi|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [... 107 1e-23
Alignment gi|NP_077168.2| protein SEC13 homolog [Mus musculus]. 98 1e-20
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 92 7e-19
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 92 7e-19
Alignment gi|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus... 85 8e-17
Alignment gi|NP_663371.2| transducin beta-like protein 3 [Mus musculus]. 83 3e-16
Alignment gi|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [... 80 3e-15
Alignment gi|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [... 80 3e-15
>ref|NP_079572.2| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Mus
musculus].
Length = 339
Score = 600 bits (1547), Expect = e-172
Identities = 279/317 (88%), Positives = 289/317 (91%)
Frame = +2
Query: 119 MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 298
MKDSLVL R+PAHPDSRCWFLAWNP+GTLLASCGGDR +RIWG EGDSWICKSVL EGH
Sbjct: 1 MKDSLVLQSRVPAHPDSRCWFLAWNPSGTLLASCGGDRKIRIWGTEGDSWICKSVLSEGH 60
Query: 299 QRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLL 478
QRTVRKVAWSPCGNYLASASFDATTCIWKKN+DDFECVTTLEGHENEVKSVAWAPSGNLL
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 479 ATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREE 658
ATCSRDK L+SHTQDVKHV+WHPSQELLASASYDDTVKLY+EE
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLSSHTQDVKHVVWHPSQELLASASYDDTVKLYQEE 180
Query: 659 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPS 838
DDWVCCATLEGHESTVWS+AFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC+GSDPS
Sbjct: 181 GDDWVCCATLEGHESTVWSIAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240
Query: 839 WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQ 1018
WKCICTLSGFH+RTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHL Q
Sbjct: 241 WKCICTLSGFHTRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLRQ 300
Query: 1019 AHPQDVNCVA*NPKEQG 1069
AH QDVNCVA NPKE G
Sbjct: 301 AHSQDVNCVAWNPKEPG 317
>ref|NP_109657.2| F-box-like/WD repeat-containing protein TBL1XR1 [Mus musculus].
Length = 514
Score = 108 bits (270), Expect = 7e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTNNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 1e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 1e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|NP_065626.1| F-box-like/WD repeat-containing protein TBL1X [Mus musculus].
Length = 527
Score = 107 bits (268), Expect = 1e-23
Identities = 80/248 (32%), Positives = 109/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 244 LDWNSDGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNKKGNYILSAGV 299
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 300 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 359
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 360 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTG 416
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 417 PATSNPNSNIMLASASFDSTVRLWDVERG--VCIHTLTKHQEPVYSVAFSPDGKYLASGS 474
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 475 FDKCVHIW 482
Score = 90.5 bits (223), Expect = 2e-18
Identities = 81/305 (26%), Positives = 126/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 182 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 241
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 242 TSLDWNSDGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNKKGNYILSAG 298
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 299 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 354
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 355 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDACV 397
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L HS+ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 398 HDLQA-HSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQE 456
Query: 986 PTFSL 1000
P +S+
Sbjct: 457 PVYSV 461
Score = 62.8 bits (151), Expect = 4e-10
Identities = 51/199 (25%), Positives = 82/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 333 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 389
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
+D CV L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 390 SMKQD--ACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVC 447
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + V G ++
Sbjct: 448 IHT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTG---GIFE 501
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 502 VCWNARGDKVGASASDGSV 520
Score = 57.0 bits (136), Expect = 2e-08
Identities = 58/226 (25%), Positives = 84/226 (37%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 176 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 235
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA+ SYD +++ E D +TL H+ +++L ++ G
Sbjct: 236 PSNKDVTSLDWNSDGTLLATGSYDGFARIWTE---DGNLASTLGQHKGPIFALKWNKKGN 292
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 293 YILSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNTTF 335
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 336 ASCSTDMCIHVCR--LGCDRPVKTF-------QGHTNEVNAIKWDP 372
>ref|NP_077168.2| protein SEC13 homolog [Mus musculus].
Length = 322
Score = 98.2 bits (243), Expect = 1e-20
Identities = 84/280 (30%), Positives = 119/280 (42%), Gaps = 26/280 (9%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSP--CGNYLASASFDATT 373
GT LA+C DRSV+I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 25 GTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKXXXXXXXXXXXXXXXX 547
IWK+ +E GH++ V SV WAP G +LA S D
Sbjct: 84 IIWKEENGTWEKTHEHSGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 143
Query: 548 XXLNSHTQDVKHVLWHPSQ-----------------ELLASASYDDTVKLYREEED-DWV 673
N+HT V W P+ + AS D+ +KL+REEED W
Sbjct: 144 KINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNLIKLWREEEDGQWK 203
Query: 674 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSW 841
LE H V +A+ PS +ASCS D V IW C+ + +
Sbjct: 204 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----------TCDDASGNM 252
Query: 842 KCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEE 961
L F+ ++ V+W LA + GD+ + +++E
Sbjct: 253 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 291
Score = 53.1 bits (126), Expect = 4e-07
Identities = 65/245 (26%), Positives = 87/245 (35%), Gaps = 25/245 (10%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPS--G 469
H+ + G LA+ S D + I+ + L GHE V VAWA G
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 470 NLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQE--LLASASYDDTVK 643
N+LA+CS D+ + H V V W P +LA S D +
Sbjct: 72 NILASCSYDRKVIIWKEENGTWEKTHEH-SGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 644 LYR-EEEDDW----VCCATLEGHESTVW-------SLAFDPSGQ------RLASCSDDRT 769
L E W + A G + W SL PSGQ + AS D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDQPSGQKPNYIKKFASGGCDNL 190
Query: 770 VRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG---ALATACGDD 940
+++WR+ D WK L HS + DVAW G + +C D
Sbjct: 191 IKLWRE------------EEDGQWKEEQKLEA-HSDWVRDVAWAPSIGLPTSTIASCSQD 237
Query: 941 AIRVF 955
RVF
Sbjct: 238 G-RVF 241
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 92.0 bits (227), Expect = 7e-19
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 2/217 (0%)
Frame = +2
Query: 137 LLGRIPAH--PDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTV 310
LL R+ H P C F +P G L+AS D S+R+W C VL +GHQR+V
Sbjct: 60 LLWRLAGHRGPVKSCCF---SPDGRLIASSSSDHSIRLWDVARSK--CLHVL-KGHQRSV 113
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
V++SP LAS +D +W+ V L GH + ++S ++P+ + LAT S
Sbjct: 114 ETVSFSPDSKQLASGGWDKRAIVWEVQSG--RRVHLLVGHCDSIQSSDFSPTSDSLATGS 171
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
D L HT ++ L + + LLAS S+D T+ +++ ++
Sbjct: 172 WDSTVHIWDLRASTPVVSYHNLEGHTGNIS-CLCYSASGLLASGSWDKTICVWKPTTNNL 230
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
L+GH V SLAF P +LAS RTV++W
Sbjct: 231 PL--QLKGHTIWVNSLAFSPDELKLASAGYSRTVKVW 265
Score = 60.1 bits (144), Expect = 3e-09
Identities = 47/162 (29%), Positives = 67/162 (41%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNL 475
H V A+SP G L +AS D +W + L GH VKS ++P G L
Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSG--RLLWRLAGHRGPVKSCCFSPDGRL 82
Query: 476 LATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYRE 655
+A+ S D L H + V+ V + P + LAS +D ++
Sbjct: 83 IASSSSD---HSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEV 139
Query: 656 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ V L GH ++ S F P+ LA+ S D TV IW
Sbjct: 140 QSGRRV--HLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIW 179
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 92.0 bits (227), Expect = 7e-19
Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 20/220 (9%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
++++ +G LLASC D ++++W +G I GH V VA P G+++ SAS
Sbjct: 156 ISFDHSGKLLASCSADMTIKLWDFQGFECIRTM---HGHDHNVSSVAIMPNGDHIVSASR 212
Query: 362 DATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXX 541
D T +W+ CV T GH V+ V G L+A+CS D+
Sbjct: 213 DKTIKMWEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKA 270
Query: 542 XXXXLNSHTQDVKHVLWHPSQE--------------------LLASASYDDTVKLYREEE 661
L H V+ + W P L S S D T+K++ +
Sbjct: 271 E---LREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW--DV 325
Query: 662 DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+C TL GH++ V + F G+ + SC+DD+T+R+W
Sbjct: 326 STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 88.6 bits (218), Expect = 8e-18
Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 3/180 (1%)
Frame = +2
Query: 251 REGDSWICK---SVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTL 421
R+ WI + GH+ V +V + P + + SAS DAT +W DFE TL
Sbjct: 89 RDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTL 146
Query: 422 EGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPS 601
+GH + V+ +++ SG LLA+CS D ++ H +V V P+
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSAD---MTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 602 QELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ + SAS D T+K++ E C T GH V + + G +ASCS+D+TVR+W
Sbjct: 204 GDHIVSASRDKTIKMW--EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
Score = 75.1 bits (183), Expect = 9e-14
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 20/218 (9%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
++P +++ S D ++++W E + +GH +V+ +++ G LAS S D
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDF---ERTLKGHTDSVQDISFDHSGKLLASCSADM 172
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
T +W + FEC+ T+ GH++ V SVA P+G+ + + SRDK
Sbjct: 173 TIKLW--DFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDK---TIKMWEVQTGYCV 227
Query: 548 XXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD 727
H + V+ V + L+AS S D TV+++ + C A L HE V +++
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKE--CKAELREHEHVVECISWA 285
Query: 728 PS--------------------GQRLASCSDDRTVRIW 781
P G L S S D+T+++W
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323
Score = 68.6 bits (166), Expect = 8e-12
Identities = 45/139 (32%), Positives = 72/139 (51%)
Frame = +2
Query: 554 LNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 733
L+ H V V++HP ++ SAS D T+K++ E D+ TL+GH +V ++FD S
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--RTLKGHTDSVQDISFDHS 161
Query: 734 GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTG 913
G+ LASCS D T+++W + QG ++CI T+ G H + VA
Sbjct: 162 GKLLASCSADMTIKLW------DFQG---------FECIRTMHG-HDHNVSSVAIMPNGD 205
Query: 914 ALATACGDDAIRVFEEDPG 970
+ +A D I+++E G
Sbjct: 206 HIVSASRDKTIKMWEVQTG 224
>ref|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus].
Length = 521
Score = 85.1 bits (209), Expect = 8e-17
Identities = 58/199 (29%), Positives = 87/199 (43%), Gaps = 1/199 (0%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDA 367
W+P+G L + DRS R+W E I EGH V +A+ G+ + DA
Sbjct: 330 WHPSGRFLGTTCYDRSWRLWDLEAQEEILHQ---EGHSMGVYDIAFHQDGSLAGTGGLDA 386
Query: 368 TTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXX 547
+W C+ LEGH E+ + ++P+G +AT S D
Sbjct: 387 FGRVWDLRTG--RCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYT- 443
Query: 548 XXLNSHTQDVKHVLWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 724
+ +H V V + P + L + +YD+T K++ W TL GHE V L
Sbjct: 444 --IPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHP--GWSPLKTLAGHEGKVMGLDI 499
Query: 725 DPSGQRLASCSDDRTVRIW 781
GQ +A+CS DRT ++W
Sbjct: 500 SSDGQLIATCSYDRTFKLW 518
Score = 61.6 bits (148), Expect = 1e-09
Identities = 54/230 (23%), Positives = 89/230 (38%), Gaps = 8/230 (3%)
Frame = +2
Query: 293 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGN 472
G R + +SP LA+A + +W + D + TL GH V ++ + P
Sbjct: 228 GDDRPISYCHFSPNSKMLATACWSGLCKLW--SVPDCSLLHTLRGHNTNVGAIVFHPKST 285
Query: 473 L--------LATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASY 628
+ LA+C+ D + HT V V+WHPS L + Y
Sbjct: 286 VSLDQKDVNLASCAAD---GSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY 342
Query: 629 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ 808
D + +L+ E + + EGH V+ +AF G + D R+W
Sbjct: 343 DRSWRLWDLEAQEEI--LHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVW--------- 391
Query: 809 GVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFE 958
+ +CI L G H + IY + + +AT GD+ +V++
Sbjct: 392 ------DLRTGRCIMFLEG-HLKEIYGINFSPNGYHIATGSGDNTCKVWD 434
>ref|NP_663371.2| transducin beta-like protein 3 [Mus musculus].
Length = 801
Score = 83.2 bits (204), Expect = 3e-16
Identities = 69/268 (25%), Positives = 116/268 (43%), Gaps = 14/268 (5%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCG-NYLASASFDATTC 376
G L ASC D+S+RIW + GH +V + S ++L + S D T
Sbjct: 388 GWLFASCAKDQSIRIWKMNKAGQVACVAQGSGHTHSVGTICCSRLKESFLVTGSQDCTVK 447
Query: 377 IW--------KKNKDD-----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXX 517
+W K D + TT H+ ++ S+A +P+ LLAT S+D+
Sbjct: 448 LWPLPEALLAKSTAADSGPVLLQAQTTRRCHDKDINSLAVSPNDKLLATGSQDRTAKLWA 507
Query: 518 XXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH 697
H + + +V + P+ ++LA+AS D T+KL+ + D+ C T EGH
Sbjct: 508 LPQCQLLGV---FTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQ--DFSCLKTFEGH 562
Query: 698 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSR 877
+++V +AF G +L S D +++W + NE C+ TL H
Sbjct: 563 DASVLKVAFVSRGSQLLSSGSDGLLKLWT--IKSNE-------------CVRTLDA-HED 606
Query: 878 TIYDVAWCQLTGALATACGDDAIRVFEE 961
++ + QL T D I ++++
Sbjct: 607 KVWGLHCSQLDDHAITGGSDSRIILWKD 634
Score = 57.8 bits (138), Expect = 1e-08
Identities = 51/202 (25%), Positives = 80/202 (39%), Gaps = 1/202 (0%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSV-LCEGHQRTVRKVAWSPCGNYLASAS 358
LA +P LLA+ DR+ ++W C+ + + GH+R + V +SP LA+AS
Sbjct: 485 LAVSPNDKLLATGSQDRTAKLWALPQ----CQLLGVFTGHRRGLWNVQFSPTDQVLATAS 540
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
D T +W DF C+ T EGH+ V VA+ G+
Sbjct: 541 ADGTIKLWA--LQDFSCLKTFEGHDASVLKVAFVSRGS---------------------- 576
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
+LL+S S D +KL+ + ++ C TL+ HE VW L
Sbjct: 577 ----------------------QLLSSGS-DGLLKLWTIKSNE--CVRTLDAHEDKVWGL 611
Query: 719 AFDPSGQRLASCSDDRTVRIWR 784
+ D + +W+
Sbjct: 612 HCSQLDDHAITGGSDSRIILWK 633
>ref|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [Mus musculus].
Length = 639
Score = 80.1 bits (196), Expect = 3e-15
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 40/238 (16%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWG-REGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFD 364
++P+G+ LA+ GD ++++W +G+ ++ EGH V W CG+++ASAS D
Sbjct: 410 FHPSGSKLATSSGDSTIKLWDLNKGEC----TLTLEGHNHAVWSCTWHSCGDFVASASLD 465
Query: 365 ATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXX 544
T+ IW N + C TL GH + V S+ + P N+L T S DK
Sbjct: 466 MTSKIWDVNSE--RCRYTLYGHTDSVNSIEFFPFSNILLTASADK---TLSVWDARTGKC 520
Query: 545 XXXLNSHTQDVKHVLWHPSQELLAS------------------------------ASYDD 634
L H V + P ++AS ++D
Sbjct: 521 EQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFRKLIPIVSIDVGPSSGNEVNFDQ 580
Query: 635 TVKLYREEEDDWVC---------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ ++ + + + L GHES V S+ F G+ L S D T+R+W
Sbjct: 581 SGRVLAQASANGIIHLLDLKSGQIHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLW 638
Score = 76.6 bits (187), Expect = 3e-14
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 3/208 (1%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGR-EGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
+ +P L SC DR ++ G +G+ + S GH + + P G+ LA++S
Sbjct: 366 IVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTGS----GHTDWLSGCCFHPSGSKLATSS 421
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
D+T +W NK EC TLEGH + V S W G+ +A+ S D
Sbjct: 422 GDSTIKLWDLNKG--ECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCR 479
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L HT V + + P +L +AS D T+ ++ C +L GH +V
Sbjct: 480 YT---LYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGK--CEQSLYGHMHSVNDA 534
Query: 719 AFDPSGQRLASCSDDRTVRIW--RQYLP 796
F P G +ASC ++W R+ +P
Sbjct: 535 TFTPRGHIIASCDARGVTKLWDFRKLIP 562
Score = 65.5 bits (158), Expect = 7e-11
Identities = 55/207 (26%), Positives = 84/207 (40%)
Frame = +2
Query: 392 KDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQ 571
K D++ HE V + P + L +CS D+ + HT
Sbjct: 347 KFDYKLNNIFRLHELPVSCIVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTG---SGHTD 403
Query: 572 DVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 751
+ +HPS LA++S D T+KL+ + + C TLEGH VWS + G +AS
Sbjct: 404 WLSGCCFHPSGSKLATSSGDSTIKLWDLNKGE--CTLTLEGHNHAVWSCTWHSCGDFVAS 461
Query: 752 CSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATAC 931
S D T +IW S +C TL G H+ ++ + + + L TA
Sbjct: 462 ASLDMTSKIW---------------DVNSERCRYTLYG-HTDSVNSIEFFPFSNILLTAS 505
Query: 932 GDDAIRVFEEDPGSDPQQPTFSLTAHL 1012
D + V++ G Q SL H+
Sbjct: 506 ADKTLSVWDARTGKCEQ----SLYGHM 528
Score = 63.2 bits (152), Expect = 3e-10
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKK-NKDDFECVTTLEGHENEVKSVAWAPSGN 472
H+ V + PC +YL S S D +WK + T GH + + + PSG+
Sbjct: 359 HELPVSCIVMHPCRDYLISCSEDR---LWKMVGLPQGNVLLTGSGHTDWLSGCCFHPSGS 415
Query: 473 LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYR 652
LAT S D L H V WH + +ASAS D T K++
Sbjct: 416 KLATSSGDS---TIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWD 472
Query: 653 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ C TL GH +V S+ F P L + S D+T+ +W
Sbjct: 473 VNSER--CRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVW 513
>ref|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [Mus musculus].
Length = 310
Score = 80.1 bits (196), Expect = 3e-15
Identities = 60/238 (25%), Positives = 97/238 (40%), Gaps = 40/238 (16%)
Frame = +2
Query: 188 WNPAGTLLASCGGDRSVRIWG-REGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFD 364
++P+G+ LA+ GD ++++W +G+ ++ EGH V W CG+++ASAS D
Sbjct: 81 FHPSGSKLATSSGDSTIKLWDLNKGEC----TLTLEGHNHAVWSCTWHSCGDFVASASLD 136
Query: 365 ATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXX 544
T+ IW N + C TL GH + V S+ + P N+L T S DK
Sbjct: 137 MTSKIWDVNSE--RCRYTLYGHTDSVNSIEFFPFSNILLTASADK---TLSVWDARTGKC 191
Query: 545 XXXLNSHTQDVKHVLWHPSQELLAS------------------------------ASYDD 634
L H V + P ++AS ++D
Sbjct: 192 EQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFRKLIPIVSIDVGPSSGNEVNFDQ 251
Query: 635 TVKLYREEEDDWVC---------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ ++ + + + L GHES V S+ F G+ L S D T+R+W
Sbjct: 252 SGRVLAQASANGIIHLLDLKSGQIHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLW 309
Score = 76.6 bits (187), Expect = 3e-14
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 3/208 (1%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGR-EGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASAS 358
+ +P L SC DR ++ G +G+ + S GH + + P G+ LA++S
Sbjct: 37 IVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTGS----GHTDWLSGCCFHPSGSKLATSS 92
Query: 359 FDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXX 538
D+T +W NK EC TLEGH + V S W G+ +A+ S D
Sbjct: 93 GDSTIKLWDLNKG--ECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDVNSERCR 150
Query: 539 XXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL 718
L HT V + + P +L +AS D T+ ++ C +L GH +V
Sbjct: 151 YT---LYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGK--CEQSLYGHMHSVNDA 205
Query: 719 AFDPSGQRLASCSDDRTVRIW--RQYLP 796
F P G +ASC ++W R+ +P
Sbjct: 206 TFTPRGHIIASCDARGVTKLWDFRKLIP 233
Score = 65.5 bits (158), Expect = 7e-11
Identities = 55/207 (26%), Positives = 84/207 (40%)
Frame = +2
Query: 392 KDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQ 571
K D++ HE V + P + L +CS D+ + HT
Sbjct: 18 KFDYKLNNIFRLHELPVSCIVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTG---SGHTD 74
Query: 572 DVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS 751
+ +HPS LA++S D T+KL+ + + C TLEGH VWS + G +AS
Sbjct: 75 WLSGCCFHPSGSKLATSSGDSTIKLWDLNKGE--CTLTLEGHNHAVWSCTWHSCGDFVAS 132
Query: 752 CSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGALATAC 931
S D T +IW S +C TL G H+ ++ + + + L TA
Sbjct: 133 ASLDMTSKIW---------------DVNSERCRYTLYG-HTDSVNSIEFFPFSNILLTAS 176
Query: 932 GDDAIRVFEEDPGSDPQQPTFSLTAHL 1012
D + V++ G Q SL H+
Sbjct: 177 ADKTLSVWDARTGKCEQ----SLYGHM 199
Score = 63.2 bits (152), Expect = 3e-10
Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 1/163 (0%)
Frame = +2
Query: 296 HQRTVRKVAWSPCGNYLASASFDATTCIWKK-NKDDFECVTTLEGHENEVKSVAWAPSGN 472
H+ V + PC +YL S S D +WK + T GH + + + PSG+
Sbjct: 30 HELPVSCIVMHPCRDYLISCSEDR---LWKMVGLPQGNVLLTGSGHTDWLSGCCFHPSGS 86
Query: 473 LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYR 652
LAT S D L H V WH + +ASAS D T K++
Sbjct: 87 KLATSSGDS---TIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWD 143
Query: 653 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 781
+ C TL GH +V S+ F P L + S D+T+ +W
Sbjct: 144 VNSER--CRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVW 184
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,527,272
Number of extensions: 1083419
Number of successful extensions: 5515
Number of sequences better than 1.0e-05: 85
Number of HSP's gapped: 4757
Number of HSP's successfully gapped: 174
Length of query: 356
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 254
Effective length of database: 12,553,887
Effective search space: 3188687298
Effective search space used: 3188687298
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004795.1| probable cytosolic iron-sulfur protein assembly... 610 e-175
Alignment gi|NP_078941.2| F-box-like/WD repeat-containing protein TBL1XR1... 108 8e-24
Alignment gi|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1... 106 3e-23
Alignment gi|NP_001132939.1| F-box-like/WD repeat-containing protein TBL1... 106 3e-23
Alignment gi|NP_001132938.1| F-box-like/WD repeat-containing protein TBL1... 106 3e-23
Alignment gi|NP_005638.1| F-box-like/WD repeat-containing protein TBL1X i... 106 3e-23
Alignment gi|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [... 105 5e-23
Alignment gi|NP_599020.1| F-box-like/WD repeat-containing protein TBL1Y [... 105 5e-23
Alignment gi|NP_150600.1| F-box-like/WD repeat-containing protein TBL1Y [... 105 5e-23
Alignment gi|NP_001129704.1| protein SEC13 homolog isoform 2 [Homo sapien... 96 6e-20
>ref|NP_004795.1| probable cytosolic iron-sulfur protein assembly protein CIAO1 [Homo
sapiens].
Length = 339
Score = 610 bits (1572), Expect = e-175
Identities = 284/317 (89%), Positives = 291/317 (91%)
Frame = +2
Query: 119 MKDSLVLLGRIPAHPDSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGH 298
MKDSLVLLGR+PAHPDSRCWFLAWNPAGTLLASCGGDR +RIWG EGDSWICKSVL EGH
Sbjct: 1 MKDSLVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH 60
Query: 299 QRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLL 478
QRTVRKVAWSPCGNYLASASFDATTCIWKKN+DDFECVTTLEGHENEVKSVAWAPSGNLL
Sbjct: 61 QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Query: 479 ATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREE 658
ATCSRDK LNSHTQDVKHV+WHPSQELLASASYDDTVKLYREE
Sbjct: 121 ATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREE 180
Query: 659 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPS 838
EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC+GSDPS
Sbjct: 181 EDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240
Query: 839 WKCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQ 1018
WKCICTLSGFHSRTIYD+AWCQLTGALATACGDDAIRVF+EDP SDPQQPTFSLTAHL Q
Sbjct: 241 WKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQ 300
Query: 1019 AHPQDVNCVA*NPKEQG 1069
AH QDVNCVA NPKE G
Sbjct: 301 AHSQDVNCVAWNPKEPG 317
Score = 82.4 bits (202), Expect = 6e-16
Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
+ W+P+ LLAS D +V+++ E D W+C + L EGH+ TV +A+ P G LAS S
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSD 214
Query: 362 DATTCIWKK-------------NKDDFECVTTLEG-HENEVKSVAWAPSGNLLAT-CSRD 496
D T IW++ + ++C+ TL G H + +AW LAT C D
Sbjct: 215 DRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD 274
Query: 497 KXXXXXXXXXXXXXXXXXXLNSH-----TQDVKHVLWHPSQE-LLASASYDDTVKLYREE 658
L +H +QDV V W+P + LLAS S D V ++ +
Sbjct: 275 AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQ 334
Query: 659 EDD 667
+
Sbjct: 335 RPE 337
>ref|NP_078941.2| F-box-like/WD repeat-containing protein TBL1XR1 [Homo sapiens].
Length = 514
Score = 108 bits (270), Expect = 8e-24
Identities = 77/248 (31%), Positives = 111/248 (44%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW ++G+ S L + H+ + + W+ GN++ SA
Sbjct: 231 LDWNSEGTLLATGSYDGFARIWTKDGN---LASTLGQ-HKGPIFALKWNKKGNFILSAGV 286
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 287 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQ 346
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQ 604
GH NEV ++ W P+GNLLA+CS D L +H +++ + W P+
Sbjct: 347 GHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHD---LQAHNKEIYTIKWSPTG 403
Query: 605 E---------LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
+LASAS+D TV+L+ + D +C TL H+ V+S+AF P G+ LAS S
Sbjct: 404 PGTNNPNANLMLASASFDSTVRLW--DVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGS 461
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 462 FDKCVHIW 469
Score = 94.4 bits (233), Expect = 2e-19
Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 27/306 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDSW------ICKSVLCEGHQ-----RTV 310
+S + AWNP LLAS GD + RIW +S + + + EG Q + V
Sbjct: 169 ESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDV 228
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW K D +TL H+ + ++ W GN + +
Sbjct: 229 TSLDWNSEGTLLATGSYDGFARIWTK---DGNLASTLGQHKGPIFALKWNKKGNFILSAG 285
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W S AS S D + + + +D
Sbjct: 286 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-SNNTFASCSTDMCIHVCKLGQDRP 341
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
+ T +GH + V ++ +DP+G LASCSDD T++IW S C+
Sbjct: 342 I--KTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIW---------------SMKQDNCV 384
Query: 851 CTLSGFHSRTIYDVAWCQLTG----------ALATACGDDAIRVFEEDPG------SDPQ 982
L H++ IY + W TG LA+A D +R+++ D G + Q
Sbjct: 385 HDLQA-HNKEIYTIKWSP-TGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQ 442
Query: 983 QPTFSL 1000
+P +S+
Sbjct: 443 EPVYSV 448
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/246 (23%), Positives = 95/246 (38%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 272 LKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCI 331
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P GN LAS S D T IW +D+ CV L+
Sbjct: 332 HVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDN--CVHDLQA 389
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 390 HNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHT---LTKHQEPVY 446
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P LAS S+D V ++ + A + + T ++ + ++ +G ++ +
Sbjct: 447 SVAFSPDGRYLASGSFDKCVHIWNTQTG-----ALVHSYRGTGGIFEVCWNAAGDKVGAS 501
Query: 755 SDDRTV 772
+ D +V
Sbjct: 502 ASDGSV 507
>ref|NP_001132940.1| F-box-like/WD repeat-containing protein TBL1X isoform b [Homo
sapiens].
Length = 526
Score = 106 bits (265), Expect = 3e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 243 LDWNTNGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGV 298
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 299 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 358
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H +++ + W P
Sbjct: 359 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYTIKWSPTG 415
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 416 PATSNPNSNIMLASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGS 473
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 474 FDKCVHIW 481
Score = 89.4 bits (220), Expect = 5e-18
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 181 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 240
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 241 TSLDWNTNGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNRKGNYILSAG 297
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 298 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 353
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW +Q V CI
Sbjct: 354 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM-----KQEV----------CI 396
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L H++ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 397 HDLQA-HNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQE 455
Query: 986 PTFSL 1000
P +S+
Sbjct: 456 PVYSV 460
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 332 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 388
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
++ C+ L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 389 SMKQE--VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVC 446
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + + V G ++
Sbjct: 447 THT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTG---GIFE 500
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 501 VCWNARGDKVGASASDGSV 519
>ref|NP_001132939.1| F-box-like/WD repeat-containing protein TBL1X isoform b [Homo
sapiens].
Length = 526
Score = 106 bits (265), Expect = 3e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 243 LDWNTNGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGV 298
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 299 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 358
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H +++ + W P
Sbjct: 359 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYTIKWSPTG 415
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 416 PATSNPNSNIMLASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGS 473
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 474 FDKCVHIW 481
Score = 89.4 bits (220), Expect = 5e-18
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 181 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 240
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 241 TSLDWNTNGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNRKGNYILSAG 297
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 298 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 353
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW +Q V CI
Sbjct: 354 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM-----KQEV----------CI 396
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L H++ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 397 HDLQA-HNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQE 455
Query: 986 PTFSL 1000
P +S+
Sbjct: 456 PVYSV 460
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 332 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 388
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
++ C+ L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 389 SMKQE--VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVC 446
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + + V G ++
Sbjct: 447 THT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTG---GIFE 500
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 501 VCWNARGDKVGASASDGSV 519
>ref|NP_001132938.1| F-box-like/WD repeat-containing protein TBL1X isoform a [Homo
sapiens].
Length = 577
Score = 106 bits (265), Expect = 3e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 294 LDWNTNGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGV 349
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 350 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 409
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H +++ + W P
Sbjct: 410 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYTIKWSPTG 466
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 467 PATSNPNSNIMLASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGS 524
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 525 FDKCVHIW 532
Score = 89.4 bits (220), Expect = 5e-18
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 232 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 291
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 292 TSLDWNTNGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNRKGNYILSAG 348
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 349 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 404
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW +Q V CI
Sbjct: 405 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM-----KQEV----------CI 447
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L H++ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 448 HDLQA-HNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQE 506
Query: 986 PTFSL 1000
P +S+
Sbjct: 507 PVYSV 511
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 383 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 439
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
++ C+ L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 440 SMKQE--VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVC 497
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + + V G ++
Sbjct: 498 THT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTG---GIFE 551
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 552 VCWNARGDKVGASASDGSV 570
>ref|NP_005638.1| F-box-like/WD repeat-containing protein TBL1X isoform a [Homo
sapiens].
Length = 577
Score = 106 bits (265), Expect = 3e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA+ D RIW +G+ S L + H+ + + W+ GNY+ SA
Sbjct: 294 LDWNTNGTLLATGSYDGFARIWTEDGN---LASTLGQ-HKGPIFALKWNRKGNYILSAGV 349
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 350 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQ 409
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H +++ + W P
Sbjct: 410 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHD---LQAHNKEIYTIKWSPTG 466
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E VC TL H+ V+S+AF P G+ LAS S
Sbjct: 467 PATSNPNSNIMLASASFDSTVRLWDIERG--VCTHTLTKHQEPVYSVAFSPDGKYLASGS 524
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 525 FDKCVHIW 532
Score = 89.4 bits (220), Expect = 5e-18
Identities = 82/305 (26%), Positives = 128/305 (41%), Gaps = 26/305 (8%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 232 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 291
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA+ S+D IW +D +TL H+ + ++ W GN + +
Sbjct: 292 TSLDWNTNGTLLATGSYDGFARIWT---EDGNLASTLGQHKGPIFALKWNRKGNYILSAG 348
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 349 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQ-NNTTFASCSTDMCIHVCRLGCDRP 404
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW +Q V CI
Sbjct: 405 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM-----KQEV----------CI 447
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPG------SDPQQ 985
L H++ IY + W A LA+A D +R+++ + G + Q+
Sbjct: 448 HDLQA-HNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQE 506
Query: 986 PTFSL 1000
P +S+
Sbjct: 507 PVYSV 511
Score = 60.8 bits (146), Expect = 2e-09
Identities = 49/199 (24%), Positives = 83/199 (41%), Gaps = 9/199 (4%)
Frame = +2
Query: 203 TLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASFDATTCIW 382
T ASC D + + R G K+ +GH V + W P G LAS S D T IW
Sbjct: 383 TTFASCSTDMCIHVC-RLGCDRPVKTF--QGHTNEVNAIKWDPSGMLLASCSDDMTLKIW 439
Query: 383 KKNKDDFECVTTLEGHENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXX 535
++ C+ L+ H E+ ++ W+P+G +LA+ S D
Sbjct: 440 SMKQE--VCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVC 497
Query: 536 XXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS 715
L H + V V + P + LAS S+D V ++ + + V G ++
Sbjct: 498 THT---LTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSYRGTG---GIFE 551
Query: 716 LAFDPSGQRLASCSDDRTV 772
+ ++ G ++ + + D +V
Sbjct: 552 VCWNARGDKVGASASDGSV 570
>ref|NP_599021.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
Length = 522
Score = 105 bits (263), Expect = 5e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA D RIW G+ S L + H+ + + W+ GNY+ SA
Sbjct: 241 LDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGV 296
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 297 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQ 356
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 357 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTG 413
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E+ VC TL H+ V+S+AF P G+ LAS S
Sbjct: 414 PATSNPNSSIMLASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGS 471
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 472 FDKYVHIW 479
Score = 90.5 bits (223), Expect = 2e-18
Identities = 84/318 (26%), Positives = 128/318 (40%), Gaps = 20/318 (6%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 179 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 238
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA S+D IW +N + +TL H+ + ++ W GN + +
Sbjct: 239 TSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGNYVLSAG 295
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 296 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQNNMTF-ASCSTDMCIHVCRLGCDHP 351
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 352 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDACV 394
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPGSDPQQPTFSLT 1003
L HS+ IY + W A LA+A D +R+++ + G +
Sbjct: 395 HDLQA-HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQG---------VC 444
Query: 1004 AHLPQAHPQDVNCVA*NP 1057
H H + V VA +P
Sbjct: 445 THTLMKHQEPVYSVAFSP 462
Score = 62.0 bits (149), Expect = 9e-10
Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 282 LKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCI 341
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P G LAS S D T IW +D CV L+
Sbjct: 342 HVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD--ACVHDLQA 399
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 400 HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHT---LMKHQEPVY 456
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P + LAS S+D V ++ + V ++ T ++ + ++ G ++ +
Sbjct: 457 SVAFSPDGKYLASGSFDKYVHIWNTQSGSLV-----HSYQGTGGIFEVCWNARGDKVGAS 511
Query: 755 SDDRTV 772
+ D +V
Sbjct: 512 ASDGSV 517
Score = 54.7 bits (130), Expect = 1e-07
Identities = 57/226 (25%), Positives = 83/226 (36%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 173 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA SYD +++ E + +TL H+ +++L ++ G
Sbjct: 233 PSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGN 289
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 290 YVLSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNMTF 332
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 333 ASCSTDMCIHVCR--LGCDHPVKTF-------QGHTNEVNAIKWDP 369
>ref|NP_599020.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
Length = 522
Score = 105 bits (263), Expect = 5e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA D RIW G+ S L + H+ + + W+ GNY+ SA
Sbjct: 241 LDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGV 296
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 297 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQ 356
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 357 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTG 413
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E+ VC TL H+ V+S+AF P G+ LAS S
Sbjct: 414 PATSNPNSSIMLASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGS 471
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 472 FDKYVHIW 479
Score = 90.5 bits (223), Expect = 2e-18
Identities = 84/318 (26%), Positives = 128/318 (40%), Gaps = 20/318 (6%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 179 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 238
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA S+D IW +N + +TL H+ + ++ W GN + +
Sbjct: 239 TSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGNYVLSAG 295
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 296 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQNNMTF-ASCSTDMCIHVCRLGCDHP 351
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 352 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDACV 394
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPGSDPQQPTFSLT 1003
L HS+ IY + W A LA+A D +R+++ + G +
Sbjct: 395 HDLQA-HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQG---------VC 444
Query: 1004 AHLPQAHPQDVNCVA*NP 1057
H H + V VA +P
Sbjct: 445 THTLMKHQEPVYSVAFSP 462
Score = 62.0 bits (149), Expect = 9e-10
Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 282 LKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCI 341
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P G LAS S D T IW +D CV L+
Sbjct: 342 HVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD--ACVHDLQA 399
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 400 HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHT---LMKHQEPVY 456
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P + LAS S+D V ++ + V ++ T ++ + ++ G ++ +
Sbjct: 457 SVAFSPDGKYLASGSFDKYVHIWNTQSGSLV-----HSYQGTGGIFEVCWNARGDKVGAS 511
Query: 755 SDDRTV 772
+ D +V
Sbjct: 512 ASDGSV 517
Score = 54.7 bits (130), Expect = 1e-07
Identities = 57/226 (25%), Positives = 83/226 (36%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 173 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA SYD +++ E + +TL H+ +++L ++ G
Sbjct: 233 PSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGN 289
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 290 YVLSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNMTF 332
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 333 ASCSTDMCIHVCR--LGCDHPVKTF-------QGHTNEVNAIKWDP 369
>ref|NP_150600.1| F-box-like/WD repeat-containing protein TBL1Y [Homo sapiens].
Length = 522
Score = 105 bits (263), Expect = 5e-23
Identities = 80/248 (32%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSPCGNYLASASF 361
L WN GTLLA D RIW G+ S L + H+ + + W+ GNY+ SA
Sbjct: 241 LDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQ-HKGPIFALKWNKKGNYVLSAGV 296
Query: 362 DATTCIW-----------------------KKNKDDFECVT----------------TLE 424
D TT IW + N C T T +
Sbjct: 297 DKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQ 356
Query: 425 GHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHP-- 598
GH NEV ++ W PSG LLA+CS D L +H++++ + W P
Sbjct: 357 GHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHD---LQAHSKEIYTIKWSPTG 413
Query: 599 -------SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS 757
S +LASAS+D TV+L+ E+ VC TL H+ V+S+AF P G+ LAS S
Sbjct: 414 PATSNPNSSIMLASASFDSTVRLWDVEQG--VCTHTLMKHQEPVYSVAFSPDGKYLASGS 471
Query: 758 DDRTVRIW 781
D+ V IW
Sbjct: 472 FDKYVHIW 479
Score = 90.5 bits (223), Expect = 2e-18
Identities = 84/318 (26%), Positives = 128/318 (40%), Gaps = 20/318 (6%)
Frame = +2
Query: 164 DSRCWFLAWNPAGTLLASCGGDRSVRIWGREGDS------WICKSVLCEG-----HQRTV 310
+S + AWNP LLAS GD + RIW +S + + + EG + V
Sbjct: 179 ESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDV 238
Query: 311 RKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEGHENEVKSVAWAPSGNLLATCS 490
+ W+ G LA S+D IW +N + +TL H+ + ++ W GN + +
Sbjct: 239 TSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGNYVLSAG 295
Query: 491 RDKXXXXXXXXXXXXXXXXXXLNSHTQDVKHVLWHPSQELLASASYDDTVKLYREEEDDW 670
DK ++ DV W + AS S D + + R D
Sbjct: 296 VDKTTIIWDAHTGEAKQQFPFHSAPALDVD---WQNNMTF-ASCSTDMCIHVCRLGCDHP 351
Query: 671 VCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCI 850
V T +GH + V ++ +DPSG LASCSDD T++IW S C+
Sbjct: 352 V--KTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIW---------------SMKQDACV 394
Query: 851 CTLSGFHSRTIYDVAWCQLTGA---------LATACGDDAIRVFEEDPGSDPQQPTFSLT 1003
L HS+ IY + W A LA+A D +R+++ + G +
Sbjct: 395 HDLQA-HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQG---------VC 444
Query: 1004 AHLPQAHPQDVNCVA*NP 1057
H H + V VA +P
Sbjct: 445 THTLMKHQEPVYSVAFSP 462
Score = 62.0 bits (149), Expect = 9e-10
Identities = 56/246 (22%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Frame = +2
Query: 182 LAWNPAGTLLASCGGDRSVRIW-GREGDS---------------W-------ICKSVLC- 289
L WN G + S G D++ IW G++ W C + +C
Sbjct: 282 LKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCI 341
Query: 290 --------------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNKDDFECVTTLEG 427
+GH V + W P G LAS S D T IW +D CV L+
Sbjct: 342 HVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQD--ACVHDLQA 399
Query: 428 HENEVKSVAWAPSGN---------LLATCSRDKXXXXXXXXXXXXXXXXXXLNSHTQDVK 580
H E+ ++ W+P+G +LA+ S D L H + V
Sbjct: 400 HSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHT---LMKHQEPVY 456
Query: 581 HVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST--VWSLAFDPSGQRLASC 754
V + P + LAS S+D V ++ + V ++ T ++ + ++ G ++ +
Sbjct: 457 SVAFSPDGKYLASGSFDKYVHIWNTQSGSLV-----HSYQGTGGIFEVCWNARGDKVGAS 511
Query: 755 SDDRTV 772
+ D +V
Sbjct: 512 ASDGSV 517
Score = 54.7 bits (130), Expect = 1e-07
Identities = 57/226 (25%), Positives = 83/226 (36%), Gaps = 11/226 (4%)
Frame = +2
Query: 413 TTLEGHENEVKSVAWAPSGNLLATCSRDKXXXXXXXXXXXXXXXXXXLNSH--------- 565
T L GHE+EV AW P +LLA+ S D + H
Sbjct: 173 TVLRGHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDV 232
Query: 566 --TQDVKHVLWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 739
+DV + W+ LLA SYD +++ E + +TL H+ +++L ++ G
Sbjct: 233 PSNKDVTSLDWNSDGTLLAMGSYDGFARIWTENGN---LASTLGQHKGPIFALKWNKKGN 289
Query: 740 RLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSWKCICTLSGFHSRTIYDVAWCQLTGAL 919
+ S D+T IW + +Q FHS DV W Q
Sbjct: 290 YVLSAGVDKTTIIWDAHTGEAKQQFP----------------FHSAPALDVDW-QNNMTF 332
Query: 920 ATACGDDAIRVFEEDPGSDPQQPTFSLTAHLPQAHPQDVNCVA*NP 1057
A+ D I V G D TF Q H +VN + +P
Sbjct: 333 ASCSTDMCIHVCR--LGCDHPVKTF-------QGHTNEVNAIKWDP 369
>ref|NP_001129704.1| protein SEC13 homolog isoform 2 [Homo sapiens].
Length = 308
Score = 95.9 bits (237), Expect = 6e-20
Identities = 84/280 (30%), Positives = 120/280 (42%), Gaps = 26/280 (9%)
Frame = +2
Query: 200 GTLLASCGGDRSVRIWGREGDSWICKSVLCEGHQRTVRKVAWSP--CGNYLASASFDATT 373
GT LA+C DRSV+I+ I + L GH+ V +VAW+ GN LAS S+D
Sbjct: 11 GTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILASCSYDRKV 69
Query: 374 CIWKKNKDDFECVTTLEGHENEVKSVAWAPS--GNLLATCSRDKXXXXXXXXXXXXXXXX 547
IW++ +E GH++ V SV WAP G +LA S D
Sbjct: 70 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK 129
Query: 548 XXLNSHTQDVKHVLW-----------HPSQE------LLASASYDDTVKLYREEED-DWV 673
N+HT V W HPS + AS D+ +KL++EEED W
Sbjct: 130 KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 189
Query: 674 CCATLEGHESTVWSLAFDPS----GQRLASCSDDRTVRIWRQYLPGNEQGVACNGSDPSW 841
LE H V +A+ PS +ASCS D V IW C+ + +
Sbjct: 190 EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW-----------TCDDASSNT 238
Query: 842 KCICTLSGFHSRTIYDVAWCQLTGALATACGDDAIRVFEE 961
L F+ ++ V+W LA + GD+ + +++E
Sbjct: 239 WSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKE 277
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 45,621,478
Number of extensions: 1303498
Number of successful extensions: 7004
Number of sequences better than 1.0e-05: 102
Number of HSP's gapped: 5935
Number of HSP's successfully gapped: 223
Length of query: 356
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 252
Effective length of database: 14,868,908
Effective search space: 3746964816
Effective search space used: 3746964816
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008607
(1069 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 511 e-142
>Sscrofa_Chr03
|| Length = 144787322
Score = 511 bits (258), Expect = e-142
Identities = 258/258 (100%)
Strand = Plus / Minus
Query: 1 gcagcggaccctttagttcctaagagaacccgcggcccttgggcggaagcaggtttgcgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49108566 gcagcggaccctttagttcctaagagaacccgcggcccttgggcggaagcaggtttgcgt 49108507
Query: 61 ggtgggagccgcagtcggcagtgctgtctctgctcaccactttctgcgccaggccgccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49108506 ggtgggagccgcagtcggcagtgctgtctctgctcaccactttctgcgccaggccgccat 49108447
Query: 121 gaaggactcgctggtgctgcttggccgtatcccggcgcacccggactcccgctgctggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49108446 gaaggactcgctggtgctgcttggccgtatcccggcgcacccggactcccgctgctggtt 49108387
Query: 181 cctggcctggaaccccgcgggaactctgctggcctcgtgcggtggcgatcgtagcgtccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49108386 cctggcctggaaccccgcgggaactctgctggcctcgtgcggtggcgatcgtagcgtccg 49108327
Query: 241 catctggggcagagaggg 258
||||||||||||||||||
Sbjct: 49108326 catctggggcagagaggg 49108309
Score = 406 bits (205), Expect = e-110
Identities = 205/205 (100%)
Strand = Plus / Minus
Query: 606 agctgttagcctctgccagctatgacgacacagtgaagctctaccgggaggaagaggatg 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49106710 agctgttagcctctgccagctatgacgacacagtgaagctctaccgggaggaagaggatg 49106651
Query: 666 actgggtatgctgtgccacccttgaaggtcatgaatccactgtgtggagcttggcctttg 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49106650 actgggtatgctgtgccacccttgaaggtcatgaatccactgtgtggagcttggcctttg 49106591
Query: 726 accccagcggccagcgcctggcatcttgcagcgatgaccgtaccgtgcgcatctggcgcc 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49106590 accccagcggccagcgcctggcatcttgcagcgatgaccgtaccgtgcgcatctggcgcc 49106531
Query: 786 agtatctgccaggcaatgagcaagg 810
|||||||||||||||||||||||||
Sbjct: 49106530 agtatctgccaggcaatgagcaagg 49106506
Score = 319 bits (161), Expect = 2e-84
Identities = 170/173 (98%)
Strand = Plus / Minus
Query: 897 ggtgtcagctgacaggggccttggctaccgcctgtggggatgatgccatccgagtatttg 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49105428 ggtgtcagctgacaggggccttggctaccgcctgtggggatgatgccatccgagtatttg 49105369
Query: 957 aggaggatcccggctcagatccacagcaacctaccttctccctgacagcccacttgcctc 1016
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 49105368 aggaggatcccggctcagatccacagcagcctaccttctccctgacagcccacttgcctc 49105309
Query: 1017 aagcccatccgcaggatgtcaactgtgtggcctgaaaccctaaggagcagggg 1069
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 49105308 aagcccattcgcaggatgtcaactgtgtggcctggaaccctaaggagcagggg 49105256
Score = 297 bits (150), Expect = 6e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 257 ggcgacagctggatctgcaaatctgtcctctgtgaaggccaccagcgcaccgtacggaag 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49107519 ggcgacagctggatctgcaaatctgtcctctgtgaaggccaccagcgcaccgtacggaag 49107460
Query: 317 gtggcctggtctccctgtggaaattacctggcttctgccagctttgatgccaccacttgc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49107459 gtggcctggtctccctgtggaaattacctggcttctgccagctttgatgccaccacttgc 49107400
Query: 377 atttggaagaaaaacaaggatgactttgag 406
||||||||||||||||||||||||||||||
Sbjct: 49107399 atttggaagaaaaacaaggatgactttgag 49107370
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 405 agtgtgtaaccactctagaaggccatgaaaatgaggtcaagtcagtagcctgggccccat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49107246 agtgtgtaaccactctagaaggccatgaaaatgaggtcaagtcagtagcctgggccccat 49107187
Query: 465 ctggcaacctccttgctacctgcagccgagataagagtgtgtgggtctgggaag 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49107186 ctggcaacctccttgctacctgcagccgagataagagtgtgtgggtctgggaag 49107133
Score = 182 bits (92), Expect = 3e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 808 aggggtggcgtgcaacggctctgaccccagctggaaatgtatctgcactttgtcaggctt 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49105835 aggggtggcgtgcaacggctctgaccccagctggaaatgtatctgcactttgtcaggctt 49105776
Query: 868 ccactccaggacgatttatgacgtcgcttggt 899
||||||||||||||||||||||||||||||||
Sbjct: 49105775 ccactccaggacgatttatgacgtcgcttggt 49105744
Score = 180 bits (91), Expect = 1e-42
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 517 agtcgatgaagaagatgagtatgaatgtgtcagtgtcctcaactcccatacacaggatgt 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49107050 agtcgatgaagaagatgagtatgaatgtgtcagtgtcctcaactcccatacacaggatgt 49106991
Query: 577 caagcatgtgctttggcacccaagccaggag 607
|||||||||||||||||||||||||||||||
Sbjct: 49106990 caagcatgtgctttggcacccaagccaggag 49106960
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,800,116
Number of extensions: 149
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 7
Length of query: 1069
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1048
Effective length of database: 2,808,413,156
Effective search space: 2943216987488
Effective search space used: 2943216987488
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)