Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002690923.1| PREDICTED: carbonic anhydrase XII-like [Bos ... 236 2e-62
Alignment gi|XP_870878.3| PREDICTED: carbonic anhydrase XII-like [Bos tau... 236 2e-62
Alignment gi|NP_001179134.1| carbonic anhydrase 14 [Bos taurus]. 118 8e-27
Alignment gi|XP_002686096.1| PREDICTED: carbonic anhydrase XIV [Bos tauru... 118 8e-27
Alignment gi|NP_776323.1| carbonic anhydrase 6 precursor [Bos taurus]. 92 8e-19
Alignment gi|XP_002689744.1| PREDICTED: carbonic anhydrase IX-like [Bos t... 88 1e-17
Alignment gi|XP_871549.3| PREDICTED: carbonic anhydrase IX-like isoform 3... 88 1e-17
Alignment gi|NP_001179201.1| receptor-type tyrosine-protein phosphatase z... 81 1e-15
Alignment gi|XP_002686954.1| PREDICTED: protein tyrosine phosphatase, rec... 81 1e-15
Alignment gi|NP_001069696.1| receptor-type tyrosine-protein phosphatase g... 77 2e-14
>ref|XP_002690923.1| PREDICTED: carbonic anhydrase XII-like [Bos taurus].
Length = 344
Score = 236 bits (603), Expect = 2e-62
Identities = 108/144 (75%), Positives = 125/144 (86%)
Frame = +3
Query: 141 MPRRNXXXXXXXXXXXXKEQPSSPAPLNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDL 320
MP R+ KEQPSSPAPLNGSKWTY+GP+GEKSWSK+YPSCGGLLQSPIDL
Sbjct: 1 MPLRSLHAAAVLLLVVLKEQPSSPAPLNGSKWTYIGPDGEKSWSKTYPSCGGLLQSPIDL 60
Query: 321 HGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLKLFEDMHIQGLGHRYNASQLHL 500
H DIL+YNASL PLAFQGYN++A+ QFVLTNNGHSVK+KL +DM ++GLG RYNASQLHL
Sbjct: 61 HDDILRYNASLRPLAFQGYNQSASPQFVLTNNGHSVKVKLPKDMQVRGLGARYNASQLHL 120
Query: 501 HWGDQNEPHGSEHTIGGKHFAAEV 572
HWGD+N+PHGSEHT+GG+HFAAE+
Sbjct: 121 HWGDKNDPHGSEHTVGGEHFAAEL 144
>ref|XP_870878.3| PREDICTED: carbonic anhydrase XII-like [Bos taurus].
Length = 344
Score = 236 bits (603), Expect = 2e-62
Identities = 108/144 (75%), Positives = 125/144 (86%)
Frame = +3
Query: 141 MPRRNXXXXXXXXXXXXKEQPSSPAPLNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDL 320
MP R+ KEQPSSPAPLNGSKWTY+GP+GEKSWSK+YPSCGGLLQSPIDL
Sbjct: 1 MPLRSLHAAAVLLLVVLKEQPSSPAPLNGSKWTYIGPDGEKSWSKTYPSCGGLLQSPIDL 60
Query: 321 HGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLKLFEDMHIQGLGHRYNASQLHL 500
H DIL+YNASL PLAFQGYN++A+ QFVLTNNGHSVK+KL +DM ++GLG RYNASQLHL
Sbjct: 61 HDDILRYNASLRPLAFQGYNQSASPQFVLTNNGHSVKVKLPKDMQVRGLGARYNASQLHL 120
Query: 501 HWGDQNEPHGSEHTIGGKHFAAEV 572
HWGD+N+PHGSEHT+GG+HFAAE+
Sbjct: 121 HWGDKNDPHGSEHTVGGEHFAAEL 144
>ref|NP_001179134.1| carbonic anhydrase 14 [Bos taurus].
Length = 336
Score = 118 bits (296), Expect = 8e-27
Identities = 53/116 (45%), Positives = 73/116 (62%)
Frame = +3
Query: 225 GSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFV 404
G WTY GP+G+ W SYP CG QSPI++ D + ++ L+PL GY + +
Sbjct: 19 GQHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPDLLPLQPHGYEQPGTEPLN 78
Query: 405 LTNNGHSVKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
L NNGH+V+L L ++++GL +Y A+QLHLHWG + P GSEH I GK AAE+
Sbjct: 79 LHNNGHTVQLSLPSTLYLEGLPRKYVAAQLHLHWGQKGTPWGSEHLINGKATAAEL 134
>ref|XP_002686096.1| PREDICTED: carbonic anhydrase XIV [Bos taurus].
Length = 336
Score = 118 bits (296), Expect = 8e-27
Identities = 53/116 (45%), Positives = 73/116 (62%)
Frame = +3
Query: 225 GSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFV 404
G WTY GP+G+ W SYP CG QSPI++ D + ++ L+PL GY + +
Sbjct: 19 GQHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPDLLPLQPHGYEQPGTEPLN 78
Query: 405 LTNNGHSVKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
L NNGH+V+L L ++++GL +Y A+QLHLHWG + P GSEH I GK AAE+
Sbjct: 79 LHNNGHTVQLSLPSTLYLEGLPRKYVAAQLHLHWGQKGTPWGSEHLINGKATAAEL 134
>ref|NP_776323.1| carbonic anhydrase 6 precursor [Bos taurus].
Length = 319
Score = 92.0 bits (227), Expect = 8e-19
Identities = 51/117 (43%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +3
Query: 231 KWTYL-GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
+WTY G EK W YP CGG QSPIDL ++YN SL L GY +F +
Sbjct: 17 EWTYSEGVLDEKHWRLQYPDCGGTRQSPIDLKMKKVRYNPSLRALNLTGYG-LRQGEFPM 75
Query: 408 TNNGHSVKLKLFEDMHI-QGLGHRYNASQLHLHW-GDQNEPHGSEHTIGGKHFAAEV 572
TNNGH+V++ L M + G +Y A Q+H HW GD +E GSEHT+ G + E+
Sbjct: 76 TNNGHTVQISLPSSMRMTTSDGSQYLAKQMHFHWGGDSSEISGSEHTVDGMRYIIEI 132
>ref|XP_002689744.1| PREDICTED: carbonic anhydrase IX-like [Bos taurus].
Length = 449
Score = 88.2 bits (217), Expect = 1e-17
Identities = 48/121 (39%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W Y G W + P+C G QSP+D+ ++ + +L PL F G+ + L
Sbjct: 127 SHWRY---GGAPPWPQVSPACAGRFQSPVDIRPELTAFCPALRPLEFLGFELPPQPKLRL 183
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEVSGVP 584
NNGH+V+L L + + G G Y A QLHLHWG P GSEHT+ G F AE+ V
Sbjct: 184 CNNGHTVQLSLPSGLKMALGPGQEYRALQLHLHWGAAGRP-GSEHTVDGHRFPAEIHVVH 242
Query: 585 L 587
L
Sbjct: 243 L 243
>ref|XP_871549.3| PREDICTED: carbonic anhydrase IX-like isoform 3 [Bos taurus].
Length = 440
Score = 88.2 bits (217), Expect = 1e-17
Identities = 48/121 (39%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W Y G W + P+C G QSP+D+ ++ + +L PL F G+ + L
Sbjct: 127 SHWRY---GGAPPWPQVSPACAGRFQSPVDIRPELTAFCPALRPLEFLGFELPPQPKLRL 183
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEVSGVP 584
NNGH+V+L L + + G G Y A QLHLHWG P GSEHT+ G F AE+ V
Sbjct: 184 CNNGHTVQLSLPSGLKMALGPGQEYRALQLHLHWGAAGRP-GSEHTVDGHRFPAEIHVVH 242
Query: 585 L 587
L
Sbjct: 243 L 243
>ref|NP_001179201.1| receptor-type tyrosine-protein phosphatase zeta [Bos taurus].
Length = 2324
Score = 81.3 bits (199), Expect = 1e-15
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQ +++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQDWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRLSGGVSETVFKASKIAFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|XP_002686954.1| PREDICTED: protein tyrosine phosphatase, receptor-type, Z
polypeptide 1 [Bos taurus].
Length = 2324
Score = 81.3 bits (199), Expect = 1e-15
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQ +++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQDWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRLSGGVSETVFKASKIAFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|NP_001069696.1| receptor-type tyrosine-protein phosphatase gamma [Bos taurus].
Length = 1399
Score = 77.4 bits (189), Expect = 2e-14
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y G G + W S SCGG QSPID+ + + L G++ ++ + + N
Sbjct: 62 WAYSGAYGPEHWVTSSVSCGGRQQSPIDISDQHARVSEEYQDLQLDGFDNESSNKTWMKN 121
Query: 414 NGHSVKLKLFEDMHIQGLG--HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
G +V + L +D + G G R+ A ++ HWG N GSEH+I G+ F E+
Sbjct: 122 TGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEM 176
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,416,031
Number of extensions: 1497748
Number of successful extensions: 6093
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 6038
Number of HSP's successfully gapped: 21
Length of query: 348
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,273,310
Effective search space: 3496960950
Effective search space used: 3496960950
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535507.2| PREDICTED: similar to carbonic anhydrase XII is... 192 3e-49
Alignment gi|XP_540298.2| PREDICTED: similar to carbonic anhydrase XIV pr... 114 2e-25
Alignment gi|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus ... 94 2e-19
Alignment gi|NP_001138646.1| carbonic anhydrase 9 [Canis lupus familiaris]. 85 1e-16
Alignment gi|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Ca... 77 3e-14
Alignment gi|XP_539545.2| PREDICTED: similar to Receptor-type tyrosine-pr... 77 3e-14
Alignment gi|XP_537711.2| PREDICTED: similar to Carbonic anhydrase IV pre... 73 4e-13
Alignment gi|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris]. 72 9e-13
Alignment gi|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (... 70 4e-12
Alignment gi|XP_541822.2| PREDICTED: similar to protein tyrosine phosphat... 70 4e-12
>ref|XP_535507.2| PREDICTED: similar to carbonic anhydrase XII isoform 1 precursor
[Canis familiaris].
Length = 381
Score = 192 bits (489), Expect = 3e-49
Identities = 85/109 (77%), Positives = 98/109 (89%)
Frame = +3
Query: 246 GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHS 425
GPNGEKSWS+ YPSCGG+LQSPIDLH DILQY+ASLVPL FQGYN +AN+QF+LTN+GHS
Sbjct: 63 GPNGEKSWSEKYPSCGGVLQSPIDLHNDILQYDASLVPLGFQGYNVSANEQFILTNDGHS 122
Query: 426 VKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
V+L L DMHIQGL RY A+QLHLHWG+QN+PHGSEHT+ GKHFAAE+
Sbjct: 123 VRLNLVPDMHIQGLRSRYTATQLHLHWGNQNDPHGSEHTVAGKHFAAEL 171
>ref|XP_540298.2| PREDICTED: similar to carbonic anhydrase XIV precursor [Canis
familiaris].
Length = 337
Score = 114 bits (285), Expect = 2e-25
Identities = 51/113 (45%), Positives = 72/113 (63%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
WTY+GP+G+ W S+P CG QSPID+ D + ++ L L QGY++ + L N
Sbjct: 23 WTYVGPHGQDHWPASHPECGSNAQSPIDIQTDSVTFDPELPALQLQGYDQPGTEPLDLHN 82
Query: 414 NGHSVKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NGH+V+L L M+++GL +Y A+QLHLHWG+ GSEH I G+ AAE+
Sbjct: 83 NGHTVQLSLPPTMYLEGLPRKYVAAQLHLHWGETGSLRGSEHQINGEATAAEL 135
>ref|NP_001002999.1| carbonic anhydrase 6 precursor [Canis lupus familiaris].
Length = 320
Score = 94.0 bits (232), Expect = 2e-19
Identities = 53/120 (44%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Frame = +3
Query: 222 NGSKWTYL-GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQ 398
+GS WTY G + W + YP+CGG QSPIDL +QYN SL L GY +
Sbjct: 19 HGSLWTYSEGALDQVHWPREYPTCGGTRQSPIDLQRRKVQYNPSLKALKLTGYRIQVG-E 77
Query: 399 FVLTNNGHSVKLKLFEDMHIQGL-GHRYNASQLHLHWGD-QNEPHGSEHTIGGKHFAAEV 572
F + NNGH+V++ L M + G Y A Q+H HWG +E GSEHTI G F AE+
Sbjct: 78 FPMINNGHTVQISLPPTMRMMASDGTEYIAQQMHFHWGGASSEISGSEHTIDGIRFVAEI 137
>ref|NP_001138646.1| carbonic anhydrase 9 [Canis lupus familiaris].
Length = 461
Score = 84.7 bits (208), Expect = 1e-16
Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W Y G+ W + P+C G QSP+D+ + + +L PL G+ + L
Sbjct: 139 SHWRY---GGDPPWPQVSPACAGRFQSPVDIRPQLAALSPALPPLELLGFELPPLPELRL 195
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NNGH+V+L L + + G G Y A QLHLHWG P GSEHT+ G F AE+
Sbjct: 196 RNNGHTVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRP-GSEHTVDGHRFPAEI 250
>ref|XP_850541.1| PREDICTED: similar to carbonic anhydrase 15 [Canis familiaris].
Length = 305
Score = 77.0 bits (188), Expect = 3e-14
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Frame = +3
Query: 255 GEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKL 434
G W + P+CGG QSPI++ ++Q + +L P FQGY+ + L N+GH+V L
Sbjct: 35 GPTHWKEMAPACGGPAQSPINIDLHLVQQDPALGPFIFQGYHSAPPGPWTLENDGHTVLL 94
Query: 435 KLFED----MHIQGLG---HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
++ D + I+G G Y A QLH HWG GSEH++ G+ + E+
Sbjct: 95 RMDTDPQSRLEIRGAGLPLPAYRALQLHFHWGGPGRA-GSEHSVDGQRYPMEM 146
>ref|XP_539545.2| PREDICTED: similar to Receptor-type tyrosine-protein phosphatase
zeta precursor (R-PTP-zeta) [Canis familiaris].
Length = 1926
Score = 77.0 bits (188), Expect = 3e-14
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Frame = +3
Query: 258 EKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLK 437
+K+W K YP+C QSPI++ D+ Q N +L L FQG+++T+ + + N G +V++
Sbjct: 63 QKNWGKKYPTCSSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHNTGKTVEIN 122
Query: 438 LFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 123 LTNDYRLSGGVSEMVFKASKISFHWGKCNMSSEGSEHSLEGQKFPLEM 170
>ref|XP_537711.2| PREDICTED: similar to Carbonic anhydrase IV precursor (Carbonate
dehydratase IV) (CA-IV) [Canis familiaris].
Length = 336
Score = 73.2 bits (178), Expect = 4e-13
Identities = 43/109 (39%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
Frame = +3
Query: 252 NGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVK 431
+G W + C QSPI++ Q +++L P +F GY++ QQ+ + NNGHSV
Sbjct: 61 SGPSQWGED---CQKSRQSPINIDTTEAQVDSNLGPFSFSGYDK--KQQWRVQNNGHSVM 115
Query: 432 LKLFEDMHIQG--LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
+ L ++ I G L +Y A QLHLHW ++ + GSEHTI G FA E+
Sbjct: 116 VLLDQEASIAGGGLSTQYRALQLHLHWSEEMD-GGSEHTINGNRFAMEM 163
>ref|NP_001138643.1| carbonic anhydrase 1 [Canis lupus familiaris].
Length = 261
Score = 72.0 bits (175), Expect = 9e-13
Identities = 42/124 (33%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
Frame = +3
Query: 219 LNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQ 398
++ S W Y NG + W K YP G QSPID+ +++ SL P++ YN ++
Sbjct: 1 MSSSNWGYDDKNGPEQWGKLYPIANGNNQSPIDIKTSETKHDTSLKPISV-SYNPATAKE 59
Query: 399 FVLTNNGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHF 560
+ N GHS + +ED + L Y SQ H HWG N+ +GSEHT+ G +
Sbjct: 60 II--NVGHSFHVN-YEDHDDRSVLKGGPLSASYRLSQFHFHWGSTND-YGSEHTVDGVKY 115
Query: 561 AAEV 572
+ E+
Sbjct: 116 SGEL 119
>ref|XP_544159.1| PREDICTED: similar to Carbonic anhydrase XIII (Carbonate
dehydratase XIII) (CA-XIII) [Canis familiaris].
Length = 279
Score = 69.7 bits (169), Expect = 4e-12
Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
WT +G W+K +P G QSPI++ ++Y++SL PL+ + AN +++N
Sbjct: 23 WTKNQKSGPIHWNKFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIK---YDANSAKIISN 79
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
+GHS + F+D + L Y Q HLHWG ++ HGSEH + G +AAE+
Sbjct: 80 SGHSFSVD-FDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADD-HGSEHVVDGVRYAAEL 136
>ref|XP_541822.2| PREDICTED: similar to protein tyrosine phosphatase, receptor type,
G precursor [Canis familiaris].
Length = 1386
Score = 69.7 bits (169), Expect = 4e-12
Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Frame = +3
Query: 246 GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHS 425
G G + W S SCGG QSPID+ + L G++ ++ + + N G +
Sbjct: 4 GAYGPEHWVTSSVSCGGRHQSPIDILDQHARVGEEYQELQLDGFDNESSNKTWMKNTGKT 63
Query: 426 VKLKLFEDMHIQGLG--HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
V + L +D + G G R+ A ++ HWG N GSEH+I G+ F E+
Sbjct: 64 VAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEM 114
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 49,295,028
Number of extensions: 1532006
Number of successful extensions: 6037
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5999
Number of HSP's successfully gapped: 14
Length of query: 348
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 244
Effective length of database: 15,407,560
Effective search space: 3759444640
Effective search space used: 3759444640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929064.3| PREDICTED: ras-related protein Rab-8B-like [... 130 2e-30
Alignment gi|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus s... 112 3e-25
Alignment gi|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa]. 93 3e-19
Alignment gi|XP_001925555.2| PREDICTED: carbonic anhydrase 9 [Sus scrofa]. 91 1e-18
Alignment gi|XP_003353378.1| PREDICTED: hypothetical protein LOC100624644... 91 1e-18
Alignment gi|XP_003134783.1| PREDICTED: receptor-type tyrosine-protein ph... 84 1e-16
Alignment gi|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus sc... 74 2e-13
Alignment gi|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa]. 69 4e-12
Alignment gi|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa]. 68 7e-12
Alignment gi|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa]. 68 1e-11
>ref|XP_001929064.3| PREDICTED: ras-related protein Rab-8B-like [Sus scrofa].
Length = 283
Score = 130 bits (326), Expect = 2e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = +3
Query: 246 GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHS 425
GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHS
Sbjct: 58 GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHS 117
>ref|XP_001924916.3| PREDICTED: carbonic anhydrase 14-like [Sus scrofa].
Length = 340
Score = 112 bits (281), Expect = 3e-25
Identities = 53/121 (43%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
Frame = +3
Query: 222 NGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQF 401
+G WTY GP+G+ W SYP CG QSPI++ D + ++ L+PL GY + +
Sbjct: 18 DGQHWTYEGPHGQDHWPASYPECGSNAQSPINIQTDSVTFDPELLPLQPHGYEQPGTEPL 77
Query: 402 VLTNNGHSVK----LKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAE 569
L NNGH+ K L L +H++GL +Y A+QLHLHWG + P GSEH I G+ AAE
Sbjct: 78 DLHNNGHTGKNAXQLSLPPTLHLEGLPRKYVAAQLHLHWGQKGSPGGSEHKINGEATAAE 137
Query: 570 V 572
+
Sbjct: 138 L 138
>ref|NP_001137588.1| carbonic anhydrase 6 [Sus scrofa].
Length = 317
Score = 92.8 bits (229), Expect = 3e-19
Identities = 51/120 (42%), Positives = 69/120 (57%), Gaps = 3/120 (2%)
Frame = +3
Query: 222 NGSKWTYL-GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQ 398
+G++WTY G E WS+ YP C G QSPID+ +QYN +L L+ GY E +
Sbjct: 19 HGAEWTYSDGELDEAHWSREYPDCDGRRQSPIDVQRKSVQYNPALRALSLTGY-EAQEGE 77
Query: 399 FVLTNNGHSVKLKLFEDMHIQGL-GHRYNASQLHLHWGDQ-NEPHGSEHTIGGKHFAAEV 572
F + NNGH+V++ L M + G +Y A Q+H HWG +E GSEHTI G + EV
Sbjct: 78 FSMINNGHTVQISLPSTMRLTAPDGTQYIAKQMHFHWGGAFSEISGSEHTIDGIRYVTEV 137
>ref|XP_001925555.2| PREDICTED: carbonic anhydrase 9 [Sus scrofa].
Length = 442
Score = 90.9 bits (224), Expect = 1e-18
Identities = 49/121 (40%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W Y G W + P+C G QSP+D+ + + +L PL GY + L
Sbjct: 120 SHWRY---GGAPPWPQVSPACAGRFQSPVDIRPQLTAFCPALRPLELLGYELPPQPELRL 176
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEVSGVP 584
NNGH+V+L L + + G G Y A QLHLHWG P GSEHT+GG F AE+ V
Sbjct: 177 RNNGHTVQLSLPPGLELSLGPGQEYRALQLHLHWGSAGRP-GSEHTVGGYRFPAEIHVVH 235
Query: 585 L 587
L
Sbjct: 236 L 236
>ref|XP_003353378.1| PREDICTED: hypothetical protein LOC100624644 [Sus scrofa].
Length = 159
Score = 90.9 bits (224), Expect = 1e-18
Identities = 48/82 (58%), Positives = 49/82 (59%)
Frame = +3
Query: 3 DRRALQGARAVRTRFPCEXXXXXXXXXXXXXXXXXXXXLAPRSRLKMPRRNXXXXXXXXX 182
+RRALQGARAVRTRFPCE LAPRSRLKMP RN
Sbjct: 77 NRRALQGARAVRTRFPCEPRRPQSPRRRVRSPAAGSPRLAPRSRLKMPHRNLHAAAVLLL 136
Query: 183 XXXKEQPSSPAPLNGSKWTYLG 248
KEQPSSPAPLNGSKWTYLG
Sbjct: 137 LVLKEQPSSPAPLNGSKWTYLG 158
>ref|XP_003134783.1| PREDICTED: receptor-type tyrosine-protein phosphatase zeta [Sus
scrofa].
Length = 2323
Score = 84.0 bits (206), Expect = 1e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQG+++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRLSGGVSEIVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|XP_003355077.1| PREDICTED: carbonic anhydrase 3-like [Sus scrofa].
Length = 260
Score = 73.6 bits (179), Expect = 2e-13
Identities = 43/119 (36%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG + W K +P G QSP+D++ ++ +L PL+ Y + +Q+ V N
Sbjct: 5 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSL-CYEQATSQRIV--N 61
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NGHS ++ F+ +G L Y Q HLHWG ++ HGSEHT+ G +AAE+
Sbjct: 62 NGHSFNVE-FDSSQDKGVLRGGPLTAAYRLRQFHLHWGSSDD-HGSEHTVDGVKYAAEL 118
>ref|NP_001008688.1| carbonic anhydrase 3 [Sus scrofa].
Length = 260
Score = 68.9 bits (167), Expect = 4e-12
Identities = 41/120 (34%), Positives = 63/120 (52%), Gaps = 6/120 (5%)
Frame = +3
Query: 231 KWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLT 410
+W Y NG W + YP G QSPI+LH ++++ SL+P +A +
Sbjct: 4 EWGYADHNGPDHWHELYPIAKGDNQSPIELHTKDIKHDPSLLPWTASYDPGSAK---TIL 60
Query: 411 NNGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NNG + ++ +F+D + + L Y Q HLHWG ++ HGSEHT+ G +AAE+
Sbjct: 61 NNGKTCRV-VFDDTYDRSMLRGGPLTAAYRLRQFHLHWGSSDD-HGSEHTVDGVKYAAEL 118
>ref|XP_001927840.1| PREDICTED: carbonic anhydrase 2 [Sus scrofa].
Length = 260
Score = 68.2 bits (165), Expect = 7e-12
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG + W K +P G QSP+D++ ++ +L PL+ Y + +Q+ V N
Sbjct: 5 WGYDKHNGPEHWHKDFPIAKGDRQSPVDINTSTAVHDPALKPLSL-CYEQATSQRIV--N 61
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NGHS ++ F+ +G L Y Q H HWG ++ GSEHT+ K +AAE+
Sbjct: 62 NGHSFNVE-FDSSQDKGVLEGGPLAGTYRLIQFHFHWG-SSDGQGSEHTVDKKKYAAEL 118
>ref|XP_001924497.2| PREDICTED: carbonic anhydrase 13 [Sus scrofa].
Length = 243
Score = 67.8 bits (164), Expect = 1e-11
Identities = 40/119 (33%), Positives = 64/119 (53%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG W++ +P G QSPI++ ++Y++SL PL+ + +A +++N
Sbjct: 6 WGYGEHNGPVHWNEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAK---IISN 62
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
+GHS + F+D + L Y Q HLHWG ++ HGSEH + G +AAE+
Sbjct: 63 SGHSFSVD-FDDTEDKSVLRGGPLTGSYRLRQFHLHWGSADD-HGSEHVVDGVKYAAEL 119
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,650,780
Number of extensions: 966575
Number of successful extensions: 3839
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 3800
Number of HSP's successfully gapped: 15
Length of query: 348
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 248
Effective length of database: 8,854,232
Effective search space: 2195849536
Effective search space used: 2195849536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus]. 205 5e-53
Alignment gi|NP_035927.1| carbonic anhydrase 14 precursor [Mus musculus]. 109 4e-24
Alignment gi|NP_033932.2| carbonic anhydrase 6 precursor [Mus musculus]. 93 4e-19
Alignment gi|NP_647466.2| carbonic anhydrase 9 precursor [Mus musculus]. 86 4e-17
Alignment gi|NP_001074775.1| receptor-type tyrosine-protein phosphatase z... 83 4e-16
Alignment gi|NP_001077426.1| carbonic anhydrase 1 [Mus musculus]. 78 1e-14
Alignment gi|NP_033929.2| carbonic anhydrase 1 [Mus musculus]. 78 1e-14
Alignment gi|NP_033007.2| receptor-type tyrosine-protein phosphatase gamm... 75 1e-13
Alignment gi|NP_085035.1| carbonic anhydrase 15 precursor [Mus musculus]. 74 2e-13
Alignment gi|NP_033931.4| carbonic anhydrase 2 [Mus musculus]. 72 5e-13
>ref|NP_848483.3| carbonic anhydrase 12 precursor [Mus musculus].
Length = 354
Score = 205 bits (521), Expect = 5e-53
Identities = 96/145 (66%), Positives = 111/145 (76%), Gaps = 1/145 (0%)
Frame = +3
Query: 141 MPRRNXXXXXXXXXXXXKEQPSSPAPLNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDL 320
MP R+ K+QPSS APLNGSKWTY+GP GEK+WSK YPSCGGLLQSPIDL
Sbjct: 1 MPHRSLRATVVLLLVILKKQPSSSAPLNGSKWTYVGPAGEKNWSKKYPSCGGLLQSPIDL 60
Query: 321 HGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLKLFEDMHIQGL-GHRYNASQLH 497
H DILQY+ASL PL FQGYN + + LTN+GHSV+L L DM+IQGL H Y A QLH
Sbjct: 61 HSDILQYDASLAPLQFQGYNVSVEKLLNLTNDGHSVRLNLNSDMYIQGLQPHHYRAEQLH 120
Query: 498 LHWGDQNEPHGSEHTIGGKHFAAEV 572
LHWG++N+PHGSEHT+ GKHFAAE+
Sbjct: 121 LHWGNRNDPHGSEHTVSGKHFAAEL 145
>ref|NP_035927.1| carbonic anhydrase 14 precursor [Mus musculus].
Length = 337
Score = 109 bits (272), Expect = 4e-24
Identities = 50/116 (43%), Positives = 70/116 (60%)
Frame = +3
Query: 225 GSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFV 404
G WTY GP+G+ W SYP CGG QSPI++ D + ++ L + GY++ +
Sbjct: 19 GHHWTYEGPHGQDHWPTSYPECGGDAQSPINIQTDSVIFDPDLPAVQPHGYDQLGTEPLD 78
Query: 405 LTNNGHSVKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
L NNGH+V+L L +H+ GL +Y A+QLHLHWG + GSEH I + AAE+
Sbjct: 79 LHNNGHTVQLSLPPTLHLGGLPRKYTAAQLHLHWGQRGSLEGSEHQINSEATAAEL 134
>ref|NP_033932.2| carbonic anhydrase 6 precursor [Mus musculus].
Length = 317
Score = 92.8 bits (229), Expect = 4e-19
Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 4/112 (3%)
Frame = +3
Query: 228 SKWTYLGPNG--EKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQF 401
S W+Y G +G E WS+ YPSCGG QSPID+ + + +N SL PL+ Y E N +F
Sbjct: 19 SDWSYSGDDGVGESQWSEQYPSCGGERQSPIDVKTEEVMFNPSLKPLSLVNY-EKENLEF 77
Query: 402 VLTNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQN-EPHGSEHTIGG 551
+TNNGH+V + L M+++ G + + H HWG ++ E GSEHTI G
Sbjct: 78 TMTNNGHTVSIDLPPSMYLETSDGTEFISKAFHFHWGGRDWELSGSEHTIDG 129
>ref|NP_647466.2| carbonic anhydrase 9 precursor [Mus musculus].
Length = 437
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/121 (39%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W+Y G W + P+C G QSP+D+ + + +L PL GY + L
Sbjct: 118 SHWSY---GGTLLWPQVSPACAGRFQSPVDIRLERTAFCRTLQPLELLGYELQPLPELSL 174
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEVSGVP 584
+NNGH+V+L L + + G G Y A QLHLHWG + P GSEHT+ G F AE+ V
Sbjct: 175 SNNGHTVQLTLPPGLKMALGPGQEYRALQLHLHWGTSDHP-GSEHTVNGHRFPAEIHVVH 233
Query: 585 L 587
L
Sbjct: 234 L 234
>ref|NP_001074775.1| receptor-type tyrosine-protein phosphatase zeta [Mus musculus].
Length = 2312
Score = 82.8 bits (203), Expect = 4e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP C QSPI++ D+ Q N +L L FQG+ + + + + N
Sbjct: 38 WSYTGALNQKNWGKKYPICNSPKQSPINIDEDLTQVNVNLKKLKFQGWEKASLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQ-GLGHR-YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D ++ GL + + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYYLSGGLSEKVFKASKITFHWGKCNVSSEGSEHSLEGQKFPLEM 153
>ref|NP_001077426.1| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 77.8 bits (190), Expect = 1e-14
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG WSK YP G QSPID+ +++SL PL+ YN ++ V N
Sbjct: 6 WGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSI-SYNPATAKEIV--N 62
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
GHS + +F+D Q L Y +Q H HWG+ N+ HGSEHT+ G ++ E+
Sbjct: 63 VGHSFHV-IFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSND-HGSEHTVDGTRYSGEL 119
>ref|NP_033929.2| carbonic anhydrase 1 [Mus musculus].
Length = 261
Score = 77.8 bits (190), Expect = 1e-14
Identities = 45/119 (37%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG WSK YP G QSPID+ +++SL PL+ YN ++ V N
Sbjct: 6 WGYGSENGPDQWSKLYPIANGNNQSPIDIKTSEANHDSSLKPLSI-SYNPATAKEIV--N 62
Query: 414 NGHSVKLKLFEDMHIQG------LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
GHS + +F+D Q L Y +Q H HWG+ N+ HGSEHT+ G ++ E+
Sbjct: 63 VGHSFHV-IFDDSSNQSVLKGGPLADSYRLTQFHFHWGNSND-HGSEHTVDGTRYSGEL 119
>ref|NP_033007.2| receptor-type tyrosine-protein phosphatase gamma precursor [Mus
musculus].
Length = 1442
Score = 74.7 bits (182), Expect = 1e-13
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y G G + W S SCGG QSPID+ + L G++ ++ + + N
Sbjct: 60 WAYSGAYGPEHWVTSSVSCGGSHQSPIDILDHHARVGDEYQELQLDGFDNESSNKTWMKN 119
Query: 414 NGHSVKLKLFEDMHIQGLG--HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
G +V + L +D + G G R+ A ++ HWG N GSEH++ G+ F E+
Sbjct: 120 TGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSVNGRRFPVEM 174
>ref|NP_085035.1| carbonic anhydrase 15 precursor [Mus musculus].
Length = 324
Score = 73.6 bits (179), Expect = 2e-13
Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Frame = +3
Query: 255 GEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKL 434
G W + P+CGG QSPI++ ++Q + +L P FQGY+ +VL N+GH+V L
Sbjct: 35 GPAHWKELAPACGGPTQSPINIDLRLVQRDYTLKPFIFQGYDSAPQDPWVLENDGHTVLL 94
Query: 435 KLFEDMH----IQGLG---HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
++ I+G G Y QLH HWG GSEH++ KH + E+
Sbjct: 95 RVNSCQQNCPAIRGAGLPSPEYRLLQLHFHWGSPGH-QGSEHSLDEKHGSMEM 146
>ref|NP_033931.4| carbonic anhydrase 2 [Mus musculus].
Length = 260
Score = 72.4 bits (176), Expect = 5e-13
Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG ++W K +P G QSP+D+ Q++ +L PL Y++ A++ V N
Sbjct: 5 WGYSKHNGPENWHKDFPIANGDRQSPVDIDTATAQHDPALQPLLI-SYDKAASKSIV--N 61
Query: 414 NGHSVKLKLFEDMH----IQG--LGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
NGHS ++ F+D ++G L Y Q H HWG ++ GSEHT+ K +AAE+
Sbjct: 62 NGHSFNVE-FDDSQDNAVLKGGPLSDSYRLIQFHFHWG-SSDGQGSEHTVNKKKYAAEL 118
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 40,891,010
Number of extensions: 1255471
Number of successful extensions: 4793
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4754
Number of HSP's successfully gapped: 16
Length of query: 348
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 246
Effective length of database: 12,553,887
Effective search space: 3088256202
Effective search space used: 3088256202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_996808.1| carbonic anhydrase 12 isoform 2 precursor [Homo... 227 2e-59
Alignment gi|NP_001209.1| carbonic anhydrase 12 isoform 1 precursor [Homo... 227 2e-59
Alignment gi|NP_036245.1| carbonic anhydrase 14 precursor [Homo sapiens]. 109 5e-24
Alignment gi|NP_001207.2| carbonic anhydrase 9 precursor [Homo sapiens]. 86 4e-17
Alignment gi|NP_001206.2| carbonic anhydrase 6 precursor [Homo sapiens]. 85 1e-16
Alignment gi|NP_002842.2| receptor-type tyrosine-protein phosphatase zeta... 84 2e-16
Alignment gi|NP_001193768.1| receptor-type tyrosine-protein phosphatase z... 84 2e-16
Alignment gi|NP_001193767.1| receptor-type tyrosine-protein phosphatase z... 84 2e-16
Alignment gi|NP_002832.3| receptor-type tyrosine-protein phosphatase gamm... 77 3e-14
Alignment gi|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens]. 74 3e-13
>ref|NP_996808.1| carbonic anhydrase 12 isoform 2 precursor [Homo sapiens].
Length = 343
Score = 227 bits (578), Expect = 2e-59
Identities = 104/144 (72%), Positives = 118/144 (81%)
Frame = +3
Query: 141 MPRRNXXXXXXXXXXXXKEQPSSPAPLNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDL 320
MPRR+ KEQPSSPAP+NGSKWTY GP+GE SWSK YPSCGGLLQSPIDL
Sbjct: 1 MPRRSLHAAAVLLLVILKEQPSSPAPVNGSKWTYFGPDGENSWSKKYPSCGGLLQSPIDL 60
Query: 321 HGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLKLFEDMHIQGLGHRYNASQLHL 500
H DILQY+ASL PL FQGYN +AN+QF+LTNNGHSVKL L DMHIQGL RY+A+QLHL
Sbjct: 61 HSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHL 120
Query: 501 HWGDQNEPHGSEHTIGGKHFAAEV 572
HWG+ N+PHGSEHT+ G+HFAAE+
Sbjct: 121 HWGNPNDPHGSEHTVSGQHFAAEL 144
>ref|NP_001209.1| carbonic anhydrase 12 isoform 1 precursor [Homo sapiens].
Length = 354
Score = 227 bits (578), Expect = 2e-59
Identities = 104/144 (72%), Positives = 118/144 (81%)
Frame = +3
Query: 141 MPRRNXXXXXXXXXXXXKEQPSSPAPLNGSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDL 320
MPRR+ KEQPSSPAP+NGSKWTY GP+GE SWSK YPSCGGLLQSPIDL
Sbjct: 1 MPRRSLHAAAVLLLVILKEQPSSPAPVNGSKWTYFGPDGENSWSKKYPSCGGLLQSPIDL 60
Query: 321 HGDILQYNASLVPLAFQGYNETANQQFVLTNNGHSVKLKLFEDMHIQGLGHRYNASQLHL 500
H DILQY+ASL PL FQGYN +AN+QF+LTNNGHSVKL L DMHIQGL RY+A+QLHL
Sbjct: 61 HSDILQYDASLTPLEFQGYNLSANKQFLLTNNGHSVKLNLPSDMHIQGLQSRYSATQLHL 120
Query: 501 HWGDQNEPHGSEHTIGGKHFAAEV 572
HWG+ N+PHGSEHT+ G+HFAAE+
Sbjct: 121 HWGNPNDPHGSEHTVSGQHFAAEL 144
>ref|NP_036245.1| carbonic anhydrase 14 precursor [Homo sapiens].
Length = 337
Score = 109 bits (272), Expect = 5e-24
Identities = 50/116 (43%), Positives = 69/116 (59%)
Frame = +3
Query: 225 GSKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFV 404
G WTY GP+G+ W SYP CG QSPID+ D + ++ L L GY++ +
Sbjct: 19 GQHWTYEGPHGQDHWPASYPECGNNAQSPIDIQTDSVTFDPDLPALQPHGYDQPGTEPLD 78
Query: 405 LTNNGHSVKLKLFEDMHIQGLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
L NNGH+V+L L +++ GL +Y A+QLHLHWG + P GSEH I + AE+
Sbjct: 79 LHNNGHTVQLSLPSTLYLGGLPRKYVAAQLHLHWGQKGSPGGSEHQINSEATFAEL 134
>ref|NP_001207.2| carbonic anhydrase 9 precursor [Homo sapiens].
Length = 459
Score = 86.3 bits (212), Expect = 4e-17
Identities = 48/121 (39%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Frame = +3
Query: 228 SKWTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVL 407
S W Y G+ W + P+C G QSP+D+ + + +L PL G+ + L
Sbjct: 139 SHWRY---GGDPPWPRVSPACAGRFQSPVDIRPQLAAFCPALRPLELLGFQLPPLPELRL 195
Query: 408 TNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEVSGVP 584
NNGHSV+L L + + G G Y A QLHLHWG P GSEHT+ G F AE+ V
Sbjct: 196 RNNGHSVQLTLPPGLEMALGPGREYRALQLHLHWGAAGRP-GSEHTVEGHRFPAEIHVVH 254
Query: 585 L 587
L
Sbjct: 255 L 255
>ref|NP_001206.2| carbonic anhydrase 6 precursor [Homo sapiens].
Length = 308
Score = 85.1 bits (209), Expect = 1e-16
Identities = 50/118 (42%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Frame = +3
Query: 228 SKWTYL-GPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFV 404
S WTY G E W + YP+CGG QSPI+L ++YN SL L GY ET +F
Sbjct: 21 SDWTYSEGALDEAHWPQHYPACGGQRQSPINLQRTKVRYNPSLKGLNMTGY-ETQAGEFP 79
Query: 405 LTNNGHSVKLKLFEDMHIQ-GLGHRYNASQLHLHWGD-QNEPHGSEHTIGGKHFAAEV 572
+ NNGH+V++ L M + G Y A Q+H HWG +E GSEHT+ G E+
Sbjct: 80 MVNNGHTVQISLPSTMRMTVADGTVYIAQQMHFHWGGASSEISGSEHTVDGIRHVIEI 137
>ref|NP_002842.2| receptor-type tyrosine-protein phosphatase zeta isoform 1 precursor
[Homo sapiens].
Length = 2315
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQG+++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|NP_001193768.1| receptor-type tyrosine-protein phosphatase zeta isoform 3 precursor
[Homo sapiens].
Length = 1448
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQG+++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|NP_001193767.1| receptor-type tyrosine-protein phosphatase zeta isoform 2 precursor
[Homo sapiens].
Length = 1455
Score = 84.3 bits (207), Expect = 2e-16
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W+Y G +K+W K YP+C QSPI++ D+ Q N +L L FQG+++T+ + + N
Sbjct: 38 WSYTGALNQKNWGKKYPTCNSPKQSPINIDEDLTQVNVNLKKLKFQGWDKTSLENTFIHN 97
Query: 414 NGHSVKLKLFEDMHIQGLGHR--YNASQLHLHWGDQN-EPHGSEHTIGGKHFAAEV 572
G +V++ L D + G + AS++ HWG N GSEH++ G+ F E+
Sbjct: 98 TGKTVEINLTNDYRVSGGVSEMVFKASKITFHWGKCNMSSDGSEHSLEGQKFPLEM 153
>ref|NP_002832.3| receptor-type tyrosine-protein phosphatase gamma precursor [Homo
sapiens].
Length = 1445
Score = 76.6 bits (187), Expect = 3e-14
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y G G + W S SCGG QSPID+ + L G++ ++ + + N
Sbjct: 60 WAYSGAYGPEHWVTSSVSCGGRHQSPIDILDQYARVGEEYQELQLDGFDNESSNKTWMKN 119
Query: 414 NGHSVKLKLFEDMHIQGLG--HRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
G +V + L +D + G G R+ A ++ HWG N GSEH+I G+ F E+
Sbjct: 120 TGKTVAILLKDDYFVSGAGLPGRFKAEKVEFHWGHSNGSAGSEHSINGRRFPVEM 174
>ref|NP_001158302.1| carbonic anhydrase 1 [Homo sapiens].
Length = 261
Score = 73.6 bits (179), Expect = 3e-13
Identities = 43/119 (36%), Positives = 61/119 (51%), Gaps = 6/119 (5%)
Frame = +3
Query: 234 WTYLGPNGEKSWSKSYPSCGGLLQSPIDLHGDILQYNASLVPLAFQGYNETANQQFVLTN 413
W Y NG + WSK YP G QSP+D+ +++ SL P++ YN ++ + N
Sbjct: 6 WGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISV-SYNPATAKEII--N 62
Query: 414 NGHSVKLKLFEDMHIQGL------GHRYNASQLHLHWGDQNEPHGSEHTIGGKHFAAEV 572
GHS + FED + + Y Q H HWG NE HGSEHT+ G ++AE+
Sbjct: 63 VGHSFHVN-FEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNE-HGSEHTVDGVKYSAEL 119
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 48,436,681
Number of extensions: 1505431
Number of successful extensions: 5929
Number of sequences better than 1.0e-05: 20
Number of HSP's gapped: 5875
Number of HSP's successfully gapped: 20
Length of query: 348
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 245
Effective length of database: 14,901,872
Effective search space: 3650958640
Effective search space used: 3650958640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008626
(1044 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1207 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1207 bits (609), Expect = 0.0
Identities = 618/621 (99%)
Strand = Plus / Plus
Query: 424 cagtgaagctgaaactgttcgaggacatgcacatccagggcctggggcaccgctacaatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862226 cagtgaagctgaaactgttcgaggacatgcacatccagggcctggggcaccgctacaatg 119862285
Query: 484 cctcacagctgcaccttcactggggggaccagaatgaaccccacggctccgagcacacta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862286 cctcacagctgcaccttcactggggggaccagaatgaaccccacggctccgagcacacta 119862345
Query: 544 tcggtgggaagcactttgccgctgaggtgagtggggtgccgctgggctgccaagtgtttt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862346 tcggtgggaagcactttgccgctgaggtgagtggggtgccgctgggctgccaagtgtttt 119862405
Query: 604 ccagtggtgggtgatctggcgtcttttcacttggctagtgtgcagataagatcagagcat 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862406 ccagtggtgggtgatctggcgtcttttcacttggctagtgtgcagataagatcagagcat 119862465
Query: 664 tggggaagagggtgccttcatgctctttacacaccagcccagccctgccagtggcagggg 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862466 tggggaagagggtgccttcatgctctttacacaccagcccagccctgccagtggcagggg 119862525
Query: 724 gaggtagagccactccagccacattgcagctcatctgtgatgccctggtccccttccttt 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862526 gaggtagagccactccagccacattgcagctcatctgtgatgccctggtccccttccttt 119862585
Query: 784 cctgaacttgctgagtttgtctctgtatcttttactgagtgatgctgctcagaaagcagt 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862586 cctgaacttgctgagtttgtctctgtatcttttactgagtgatgctgctcagaaagcagt 119862645
Query: 844 gtgcccagggtggcacagtgggacacacacgccccttttctagacatccccctctgtttg 903
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 119862646 gtgcccagggtggcacagtgggacacacatgccccttttctagacatccccctctgtttg 119862705
Query: 904 cacagattaggatctggctgacccattccactgctgaatcatactgggctaattgctccg 963
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 119862706 cacagattaggatctggctgacccatcccactgctgaatcatactgggctaattgctccg 119862765
Query: 964 ccaactcctccatctttcttcacactccatgctgtttgcatttcccatcccctctttctc 1023
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119862766 ccaactcctcaatctttcttcacactccatgctgtttgcatttcccatcccctctttctc 119862825
Query: 1024 tgtgcatgggtcatgcttgga 1044
|||||||||||||||||||||
Sbjct: 119862826 tgtgcatgggtcatgcttgga 119862846
Score = 434 bits (219), Expect = e-119
Identities = 222/223 (99%)
Strand = Plus / Plus
Query: 4 acagacgtgctctgcagggcgcccgggccgtgcgcacgaggttcccgtgcgagccccgcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119822391 acagacgtgctctgcagggcgcccgggccgtgcgcacgaggttcccgtgcgagccccgcc 119822450
Query: 64 gaccccagagcccgagacggagagtgaggagcccagccgccggcagcccgcgtctggccc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119822451 gaccccagagcccgagacggagagtgaggagcccagccgccggcagcccgcgtctggccc 119822510
Query: 124 cgagaagccgcctgaagatgccccgccgcaacctacacgcggctgccgtcctcctgctcc 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 119822511 cgagaagccgcctgaagatgccccaccgcaacctacacgcggctgccgtcctcctgctcc 119822570
Query: 184 tggtcttaaaggaacagccttccagcccagccccactcaacgg 226
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119822571 tggtcttaaaggaacagccttccagcccagccccactcaacgg 119822613
Score = 359 bits (181), Expect = 2e-96
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 246 ggtcccaatggggagaagagctggtccaagagctacccatcatgtgggggcctgctacag 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119861130 ggtcccaatggggagaagagctggtccaagagctacccatcatgtgggggcctgctacag 119861189
Query: 306 tccccaatagacctgcatggtgacatcctccagtacaacgccagccttgtaccccttgcc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119861190 tccccaatagacctgcatggtgacatcctccagtacaacgccagccttgtaccccttgcc 119861249
Query: 366 ttccaaggctacaatgagactgccaaccagcagtttgtcctgaccaacaacggccattca 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119861250 ttccaaggctacaatgagactgccaaccagcagtttgtcctgaccaacaacggccattca 119861309
Query: 426 g 426
|
Sbjct: 119861310 g 119861310
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,719,219
Number of extensions: 207
Number of successful extensions: 207
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 3
Length of query: 1044
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1023
Effective length of database: 2,808,413,156
Effective search space: 2873006658588
Effective search space used: 2873006658588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)