Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098513.1| dipeptidyl peptidase 7 [Bos taurus]. 672 0.0
Alignment gi|NP_001033253.1| lysosomal Pro-X carboxypeptidase precursor [... 244 2e-64
Alignment gi|NP_001069798.2| thymus-specific serine protease [Bos taurus]. 91 4e-18
>ref|NP_001098513.1| dipeptidyl peptidase 7 [Bos taurus].
Length = 488
Score = 672 bits (1734), Expect = 0.0
Identities = 337/494 (68%), Positives = 358/494 (72%)
Frame = +1
Query: 127 HSPPEPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWS 306
H P +P F+E YFEQLLDHFNFERFGNKTF QRFL+++KFW +GEGP+FFYTGNEGDVWS
Sbjct: 29 HRPKDPEFQEAYFEQLLDHFNFERFGNKTFLQRFLMTEKFWNRGEGPIFFYTGNEGDVWS 88
Query: 307 FANNSGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXX 486
FANNSGFIL HRYYGKSLPFGERSTWRGYTELLTVE
Sbjct: 89 FANNSGFILELAEQQGALVVFAEHRYYGKSLPFGERSTWRGYTELLTVEQALADFAGLLR 148
Query: 487 XXXXXXXXXDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFR 666
DAPAIAFGGSYGGMLSAYLR+KYPH DPYQFF+
Sbjct: 149 ALRQELEAPDAPAIAFGGSYGGMLSAYLRIKYPHLVAGALAASAPVVSAAGLGDPYQFFQ 208
Query: 667 DVSADFEGQGPECAQGVRDAFRQIKDLFLQGAYDRVSQEFGTCQPLSGQKDLTQLFGFAR 846
DVSADF+GQ PECA+ V+DAFRQI+DLF QGA VSQEFGTCQPLSG KDLTQLFGFAR
Sbjct: 209 DVSADFQGQSPECARAVQDAFRQIRDLFQQGAPHVVSQEFGTCQPLSGPKDLTQLFGFAR 268
Query: 847 NAFTLLAMMDYPYPTDFVAHLPANPVQVACDRLLSKSQRIKGLRELTGLVYNSSGTVPCY 1026
NAFT+LAMMDYPY TDFV HLPA+PVQV C RLLS+S RI GLR L GLVYNSSG PCY
Sbjct: 269 NAFTVLAMMDYPYATDFVGHLPAHPVQVGCSRLLSESSRIAGLRALAGLVYNSSGIEPCY 328
Query: 1027 DIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCL 1206
DIY QYQACADPTGCG G +AKAWDYQACTEI+LTFSSNNVSD+FP+LPFTE RQQYCL
Sbjct: 329 DIYLQYQACADPTGCGLGSDAKAWDYQACTEISLTFSSNNVSDLFPELPFTEAQRQQYCL 388
Query: 1207 DMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXX 1386
D WGVWPRQDWLQTSF GG
Sbjct: 389 DTWGVWPRQDWLQTSF--------------------------------GG---------- 406
Query: 1387 XXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVV 1566
NIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLR SHP DPASVV
Sbjct: 407 --GDLTAASNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRGSHPDDPASVV 464
Query: 1567 EARRVEATLIGKWV 1608
EARR+EA LIGKWV
Sbjct: 465 EARRLEAALIGKWV 478
>ref|NP_001033253.1| lysosomal Pro-X carboxypeptidase precursor [Bos taurus].
Length = 499
Score = 244 bits (623), Expect = 2e-64
Identities = 152/490 (31%), Positives = 225/490 (45%), Gaps = 7/490 (1%)
Frame = +1
Query: 160 YFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILXX 339
Y +Q +DHF F ++TF+QR+L++D +WK+ G + FYTGNEGD+ F NN+GF+
Sbjct: 54 YIQQKVDHFGFNI--DRTFKQRYLIADNYWKEDGGSILFYTGNEGDIIWFCNNTGFMWDI 111
Query: 340 XXXXXXXXXXXXHRYYGKSLPFG--ERSTWRGYTELLTVEXXXXXXXXXXXXXXXXXXXX 513
HRYYG+SLPFG S R L T +
Sbjct: 112 AEEMKAMLVFAEHRYYGESLPFGADSFSDSRHLNFLTTEQALADFAKLIRYLKRTIPGAR 171
Query: 514 DAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSADFEGQ 693
+ IA GGSYGGML+A+ RMKYPH F + V+ DF
Sbjct: 172 NQHVIALGGSYGGMLAAWFRMKYPHLVVGALASSAPIWQFNDLVPCDIFMKIVTTDFSQS 231
Query: 694 GPECAQGVRDAFRQIKDLFLQGAYDR-VSQEFGTCQPLSGQKDLTQLFGFARNAFTLLAM 870
GP C++ +R ++ I L +G R +S+ C PL+ +D+ +L + + +AM
Sbjct: 232 GPNCSESIRRSWDAINRLAKKGTGLRWLSEALHLCTPLTKSQDVQRLKDWISETWVNVAM 291
Query: 871 MDYPYPTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYNSSGTVPCYDIYA 1038
+DYPY ++F+ LPA PV+V C + + ++ + + + YN SG C ++
Sbjct: 292 VDYPYESNFLQPLPAWPVKVVCQYFKYSNVPDTVMVQNIFQALNVYYNYSGQAKCLNVSE 351
Query: 1039 QYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMWG 1218
+ G W YQACTE+ + S+ V D+F + C WG
Sbjct: 352 TATSSLGVLG---------WSYQACTEMVMPTCSDGVDDMFEPHSWNMKEYSDDCFKQWG 402
Query: 1219 VWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXXX 1398
V PR W+ T + ++ HT
Sbjct: 403 VRPRPSWIPTMYGG---------------------------KNISSHT------------ 423
Query: 1399 XXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEARR 1578
NIIFSNG+LDPW+ GG+ +++ ++LAI I GAHHLDLRAS+ DP SV R
Sbjct: 424 -----NIIFSNGELDPWSGGGVTKDITDTLLAIVIPNGAHHLDLRASNALDPVSVQLTRS 478
Query: 1579 VEATLIGKWV 1608
+E + +W+
Sbjct: 479 LEVKYMKQWI 488
>ref|NP_001069798.2| thymus-specific serine protease [Bos taurus].
Length = 516
Score = 90.5 bits (223), Expect = 4e-18
Identities = 118/502 (23%), Positives = 178/502 (35%), Gaps = 16/502 (3%)
Frame = +1
Query: 151 REVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFI 330
+E + EQ LD FN ++F QR+ V+D+ W +GP+F + G EG + + G
Sbjct: 56 KEGWLEQPLDPFNAS--DRRSFLQRYWVNDQHWTSQDGPVFLHLGGEGSLGPGSVMRGHP 113
Query: 331 LXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXXXXXXXXX 510
HR+YG S+P E L +
Sbjct: 114 ANLAPIWGALVISLEHRFYGLSIP-AEGLDMAQLRFLSSRHALADAASARLTLSRLFNVS 172
Query: 511 XDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFF-RDVSADFE 687
+P I FGGSY G L+A+ R+K+PH R +
Sbjct: 173 STSPWICFGGSYAGSLAAWARLKFPHLFFASIASSAPVRAILDFSKYNDVVSRSLMNTAI 232
Query: 688 GQGPECAQGVRDAFRQIKDLF--LQGAYDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTL 861
G EC AF +++ +GA+ +S E G C L +D +L G L
Sbjct: 233 GGSLECRAAASAAFAEVERRLRASRGAWATLSVELGACGSLERAEDQAELLG------AL 286
Query: 862 LAMMDYPYPTDFVAHLPANPVQVA---------CDRLLSKSQRIKGLRELTGLVYNSSG- 1011
A++ D A P + Q+ C S S +GLR +V +S G
Sbjct: 287 QALVGGAVQYDGQAGAPLSVRQLCRLLLGDRGNCKGNCSGSAPYRGLRRAVQVVTHSLGQ 346
Query: 1012 ---TVPCYDIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTE 1182
++P + AQ + S + W YQ CTE + F LP
Sbjct: 347 RCLSIPRAETVAQLRVTELQV---SSVGDRQWLYQTCTEFGYYVTCEVPGCPFSQLPALP 403
Query: 1183 TLRQQYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHT 1362
+ + C ++G L TS S +Q A S GG T
Sbjct: 404 S-ELELCEQVFG-------LSTS---------------SVAQAVAQTNS-----YYGGQT 435
Query: 1363 QXXXXXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASH 1542
++F NGD DPW + L +S A+ I +H LD+
Sbjct: 436 -------------PGATQVLFINGDTDPWHVLSVTQPLGSSEPALLIPSASHCLDMAPER 482
Query: 1543 PADPASVVEARRVEATLIGKWV 1608
P+D S+ AR+ + + W+
Sbjct: 483 PSDSPSLRLARQKVSQQLQTWL 504
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 67,337,776
Number of extensions: 2207615
Number of successful extensions: 10548
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10146
Number of HSP's successfully gapped: 7
Length of query: 536
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,140,958
Effective search space: 6066470982
Effective search space used: 6066470982
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848703.1| PREDICTED: similar to Dipeptidyl-peptidase II p... 664 0.0
Alignment gi|XP_533994.2| PREDICTED: similar to Lysosomal Pro-X carboxype... 250 3e-66
Alignment gi|XP_850041.1| PREDICTED: similar to Dipeptidyl-peptidase II p... 227 3e-59
Alignment gi|XP_545414.2| PREDICTED: similar to Thymus-specific serine pr... 80 4e-15
Alignment gi|XP_856786.1| PREDICTED: similar to Dipeptidyl-peptidase II p... 61 3e-09
>ref|XP_848703.1| PREDICTED: similar to Dipeptidyl-peptidase II precursor (DPP II)
(Dipeptidyl aminopeptidase II) (Quiescent cell proline
dipeptidase) (Dipeptidyl peptidase 7) isoform 1 [Canis
familiaris].
Length = 497
Score = 664 bits (1712), Expect = 0.0
Identities = 334/494 (67%), Positives = 363/494 (73%)
Frame = +1
Query: 127 HSPPEPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWS 306
H E F E YFEQLLDHFNFERFGNKTF+QRFLVS+KFWK+G+GP+FFYTGNEG+VWS
Sbjct: 29 HRGVESHFWEGYFEQLLDHFNFERFGNKTFQQRFLVSEKFWKRGKGPIFFYTGNEGNVWS 88
Query: 307 FANNSGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXX 486
FANNSGFIL HRYYGKSLPFGE+ST RGYTELLTVE
Sbjct: 89 FANNSGFILELAAQQEALVIFAEHRYYGKSLPFGEQSTRRGYTELLTVEQALADFARLLL 148
Query: 487 XXXXXXXXXDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFR 666
D+PAIAFGGSYGGMLSAY+R+KYPH D YQFFR
Sbjct: 149 ALRRDLGAQDSPAIAFGGSYGGMLSAYMRIKYPHLVAGALAASAPVVAVAGLGDSYQFFR 208
Query: 667 DVSADFEGQGPECAQGVRDAFRQIKDLFLQGAYDRVSQEFGTCQPLSGQKDLTQLFGFAR 846
DVSADFEGQ P+CAQGVRDAF+QI+DL QGA D VS+EFGTCQPLS +KDLTQLFGFAR
Sbjct: 209 DVSADFEGQSPKCAQGVRDAFQQIQDLCFQGACDVVSREFGTCQPLSSRKDLTQLFGFAR 268
Query: 847 NAFTLLAMMDYPYPTDFVAHLPANPVQVACDRLLSKSQRIKGLRELTGLVYNSSGTVPCY 1026
NAFT+LAMMDYPYPT F+AHLPANPV+V CDRLLS+SQ IKGLR L GLVYNSSGTVPCY
Sbjct: 269 NAFTVLAMMDYPYPTHFIAHLPANPVKVGCDRLLSESQSIKGLRALAGLVYNSSGTVPCY 328
Query: 1027 DIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCL 1206
DIY QYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNV+D+FP+LPFT+ LRQQYCL
Sbjct: 329 DIYLQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVTDLFPELPFTDALRQQYCL 388
Query: 1207 DMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXX 1386
D WGVWPR+DWLQTSF DL G +
Sbjct: 389 DTWGVWPRRDWLQTSFGG---------------------------DDLRGAS-------- 413
Query: 1387 XXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVV 1566
NI+FSNGDLDPWA GGI+SNLSA+VLAITI GGAHHLDLRASHP DPASV
Sbjct: 414 ---------NILFSNGDLDPWAGGGIRSNLSATVLAITIQGGAHHLDLRASHPEDPASVR 464
Query: 1567 EARRVEATLIGKWV 1608
EARR EA LIG+WV
Sbjct: 465 EARRFEARLIGEWV 478
>ref|XP_533994.2| PREDICTED: similar to Lysosomal Pro-X carboxypeptidase precursor
(Prolylcarboxypeptidase) (PRCP) (Proline
carboxypeptidase) (Angiotensinase C) (Lysosomal
carboxypeptidase C) [Canis familiaris].
Length = 497
Score = 250 bits (638), Expect = 3e-66
Identities = 157/492 (31%), Positives = 234/492 (47%), Gaps = 9/492 (1%)
Frame = +1
Query: 160 YFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILXX 339
Y Q +DHF F +KTF+QR+L++D+ WKK G + FYTGNEGD+ F NN+GF+
Sbjct: 52 YILQKVDHFGFAV--DKTFKQRYLIADEHWKKDGGSILFYTGNEGDIIWFCNNTGFMWDV 109
Query: 340 XXXXXXXXXXXXHRYYGKSLPFGERS--TWRGYTELLTVEXXXXXXXXXXXXXXXXXXXX 513
HRYYG+SLPFG S R L + +
Sbjct: 110 AEEMKAMLVFAEHRYYGESLPFGNNSFKDSRHLNYLTSEQALADFAMLIKHLKRTIPGAK 169
Query: 514 DAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSADFEGQ 693
+ P IA GGSYGGML+A+ RMKYPH F V+ DF+
Sbjct: 170 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFGNLVSCGVFMEIVTTDFKKS 229
Query: 694 GPECAQGVRDAFRQIKDLFLQGA-YDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTLLAM 870
GP C++ +R ++ I GA +S+ C PL+ +D+ L + + +AM
Sbjct: 230 GPNCSESIRRSWDAINRYSRTGAGLGWLSEALHLCTPLTNTQDVQHLKIWISETWINMAM 289
Query: 871 MDYPYPTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYNSSGTVPCYDIYA 1038
+DYPY +DF+ LP P++V C L + +Q ++ + + + YN SG C ++
Sbjct: 290 VDYPYESDFLQPLPPWPIKVVCQYLRNPNVPDAQLLQNIFQALNVYYNYSGQASCLNV-- 347
Query: 1039 QYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQ--QYCLDM 1212
++ T G + W YQACTE+ + F +N + D+F P + LR+ C
Sbjct: 348 -----SETTTSSLG--TQGWSYQACTEMVMPFCTNGIDDMFE--PHSWNLREFSDDCFKQ 398
Query: 1213 WGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXX 1392
WGV PR W+ T++ ++ HT
Sbjct: 399 WGVRPRPAWIITTYGG---------------------------KNISAHT---------- 421
Query: 1393 XXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEA 1572
NIIFSNG+LDPW+ GG+ +++ +++AITI GAHHLDLRA + DP +V+ A
Sbjct: 422 -------NIIFSNGELDPWSGGGVTKDITDTLVAITIPEGAHHLDLRARNAFDPTAVLLA 474
Query: 1573 RRVEATLIGKWV 1608
R +E + +W+
Sbjct: 475 RSLEVRHMKQWI 486
>ref|XP_850041.1| PREDICTED: similar to Dipeptidyl-peptidase II precursor (DPP II)
(Dipeptidyl aminopeptidase II) (Quiescent cell proline
dipeptidase) (Dipeptidyl peptidase 7) [Canis familiaris].
Length = 325
Score = 227 bits (578), Expect = 3e-59
Identities = 116/183 (63%), Positives = 126/183 (68%)
Frame = +1
Query: 1060 PTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMWGVWPRQDW 1239
PTGCGSGPNAKAWDYQACTEINLTFSSNNV+D+FP+LPFT+ LRQQYCLD WGVWPR+DW
Sbjct: 168 PTGCGSGPNAKAWDYQACTEINLTFSSNNVTDLFPELPFTDALRQQYCLDTWGVWPRRDW 227
Query: 1240 LQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXXXXXXXXNI 1419
LQTSF DL G + NI
Sbjct: 228 LQTSFGG---------------------------DDLRGAS-----------------NI 243
Query: 1420 IFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEARRVEATLIG 1599
+FSNGDLDPWA GGI+SNLSA+VLAITI GGAHHLDLRASHP DPASV EARR EA LIG
Sbjct: 244 LFSNGDLDPWAGGGIRSNLSATVLAITIQGGAHHLDLRASHPEDPASVREARRFEARLIG 303
Query: 1600 KWV 1608
+WV
Sbjct: 304 EWV 306
>ref|XP_545414.2| PREDICTED: similar to Thymus-specific serine protease precursor
[Canis familiaris].
Length = 521
Score = 80.5 bits (197), Expect = 4e-15
Identities = 114/505 (22%), Positives = 174/505 (34%), Gaps = 19/505 (3%)
Frame = +1
Query: 151 REVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFI 330
++ + EQ LD FN ++F QR+ V+D+ W GP+F + G E + S + G
Sbjct: 56 KQGWLEQPLDPFNAS--DTRSFLQRYWVNDQHWTSQRGPVFLHLGGESSLRSGSVLRGHP 113
Query: 331 LXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXXXXXXXXX 510
HR+YG S+P G + L +
Sbjct: 114 TALAPAWGALVIGLEHRFYGLSVPAGGLDVAQ-LRFLSSRHALADVASARLALARLFNVS 172
Query: 511 XDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQF---FRDVSAD 681
+P I FGGSY G L+A+ R+K+PH + + R V A
Sbjct: 173 SSSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRATLDFSEYNEVRGSGRQVHAV 232
Query: 682 FEG-------QGPECAQGVRDAFRQIKDLFLQGAYDR--VSQEFGTCQPLSGQKDLTQLF 834
G P+C AF +++ G R + E G C PL +D +L
Sbjct: 233 LGGGLRPRGVSLPQCRAAASAAFAEVERRLHAGGATRSALRAELGACSPLDRAEDQAELL 292
Query: 835 GFARNAFTLLAMMDYPYPTDFVAHLPANPVQVACDRLL------SKSQRIKGLRELTGLV 996
G L A++ D A +P + V+ C LL S+S GLR +V
Sbjct: 293 G------ALQALVGGAVQYDAQAGVPLS-VRGLCGLLLEGRSNRSRSAPYHGLRRAVQVV 345
Query: 997 YNSSGTVPCYDIYAQYQACADPTGCG-SGPNAKAWDYQACTEINLTFSSNNVSDIFPDLP 1173
+S G A+ A T SG + W YQ CTE + F +P
Sbjct: 346 MHSLGQRCLSFSRAETVAQLKVTDSQVSGVGDRQWLYQTCTEFGFYITCEGPRCPFSQVP 405
Query: 1174 FTETLRQQYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLG 1353
+ + + C ++G +S S V + G
Sbjct: 406 ALPS-QLELCEQVFG-------------------------LSASSVVQAV--AQTNSYYG 437
Query: 1354 GHTQXXXXXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLR 1533
G T ++F NGD DPW I A+ I +H +D+
Sbjct: 438 GQT-------------PGATQVLFINGDTDPWHVLSITQASGPLESALLIPSASHCMDMA 484
Query: 1534 ASHPADPASVVEARRVEATLIGKWV 1608
P+D S+ R+ + W+
Sbjct: 485 PDRPSDSPSLRLGRQSIFQQLQTWL 509
>ref|XP_856786.1| PREDICTED: similar to Dipeptidyl-peptidase II precursor (DPP II)
(Dipeptidyl aminopeptidase II) (Quiescent cell proline
dipeptidase) (Dipeptidyl peptidase 7) isoform 2 [Canis
familiaris].
Length = 160
Score = 61.2 bits (147), Expect = 3e-09
Identities = 31/47 (65%), Positives = 33/47 (70%)
Frame = +1
Query: 127 HSPPEPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGP 267
H E F E YFEQLLDHFNFERFGNKTF+QRFLVS + GP
Sbjct: 29 HRGVESHFWEGYFEQLLDHFNFERFGNKTFQQRFLVSGEVALGVPGP 75
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 70,161,605
Number of extensions: 2266572
Number of successful extensions: 10744
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10423
Number of HSP's successfully gapped: 9
Length of query: 536
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 428
Effective length of database: 15,274,216
Effective search space: 6537364448
Effective search space used: 6537364448
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362222.1| PREDICTED: dipeptidyl peptidase 2-like, part... 311 5e-85
Alignment gi|XP_003129755.2| PREDICTED: lysosomal Pro-X carboxypeptidase-... 250 1e-66
Alignment gi|XP_003356607.1| PREDICTED: thymus-specific serine protease [... 91 2e-18
Alignment gi|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa]. 49 8e-06
>ref|XP_003362222.1| PREDICTED: dipeptidyl peptidase 2-like, partial [Sus scrofa].
Length = 214
Score = 311 bits (798), Expect = 5e-85
Identities = 174/270 (64%), Positives = 176/270 (65%)
Frame = +1
Query: 799 PLSGQKDLTQLFGFARNAFTLLAMMDYPYPTDFVAHLPANPVQVACDRLLSKSQRIKGLR 978
PLSGQKDLTQLFGFARNAFTLLAMMDYPYPTDFV +P P QVACDRLLSKSQRIKGLR
Sbjct: 1 PLSGQKDLTQLFGFARNAFTLLAMMDYPYPTDFVGGIPLAP-QVACDRLLSKSQRIKGLR 59
Query: 979 ELTGLVYNSSGTVPCYDIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDI 1158
ELT GPNAKAWDYQACTEINLTFSSNNVSDI
Sbjct: 60 ELT------------------------------GPNAKAWDYQACTEINLTFSSNNVSDI 89
Query: 1159 FPDLPFTETLRQQYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPC 1338
ETLRQQYCLDMWGVWPRQDWLQTSF
Sbjct: 90 XXXXXXXETLRQQYCLDMWGVWPRQDWLQTSFG--------------------------- 122
Query: 1339 ITDLGGHTQXXXXXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAH 1518
GG NIIFSNGDLDPWA GGIQSNLSASVLAITIHGGAH
Sbjct: 123 ----GGE-------------LTAASNIIFSNGDLDPWASGGIQSNLSASVLAITIHGGAH 165
Query: 1519 HLDLRASHPADPASVVEARRVEATLIGKWV 1608
HLDLRASHPADPASVVEARR+EATLIGKWV
Sbjct: 166 HLDLRASHPADPASVVEARRLEATLIGKWV 195
>ref|XP_003129755.2| PREDICTED: lysosomal Pro-X carboxypeptidase-like [Sus scrofa].
Length = 480
Score = 250 bits (639), Expect = 1e-66
Identities = 156/485 (32%), Positives = 225/485 (46%), Gaps = 7/485 (1%)
Frame = +1
Query: 175 LDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILXXXXXXX 354
+DHF F +KTF+QR+L++D W+K G + FYTGNEGD+ F NN+GF+
Sbjct: 40 VDHFGFNT--DKTFKQRYLIADTHWRKDGGSILFYTGNEGDIIWFCNNTGFMWDVAEELK 97
Query: 355 XXXXXXXHRYYGKSLPFGERS--TWRGYTELLTVEXXXXXXXXXXXXXXXXXXXXDAPAI 528
HRYYG+SLPFG S R L + + + P I
Sbjct: 98 AMLVFAEHRYYGESLPFGAHSFKDSRHLNFLTSEQALADFAELIRHLKRKIPGTENQPVI 157
Query: 529 AFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSADFEGQGPECA 708
A GGSYGGML+A+ RMKYPH F + V+ DF GP C+
Sbjct: 158 ALGGSYGGMLAAWFRMKYPHMVVGALASSAPIWHFENLVPCGVFMKTVTKDFRESGPNCS 217
Query: 709 QGVRDAFRQIKDLFLQG-AYDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTLLAMMDYPY 885
+ +R ++ I L +G +S+ C PL+ +D+ +L + + LAM+DYPY
Sbjct: 218 ETIRRSWDAINRLARKGTGLHWLSEALHLCTPLTNSQDVQRLKDWISETWVNLAMVDYPY 277
Query: 886 PTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYNSSGTVPCYDIYAQYQAC 1053
+DF+ LPA P++V C L +S S ++ + + + YN SG C +I
Sbjct: 278 ESDFLQPLPAWPIKVVCQYLKNPNVSDSLLVQNIFQALNVYYNYSGQARCLNI------- 330
Query: 1054 ADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMWGVWPRQ 1233
S A W YQACTE+ + F SN + D+F + C WGV PR
Sbjct: 331 --SETATSSLGALGWSYQACTEMVMPFCSNGIDDMFEPNSWDLKEFSDDCFRQWGVRPRP 388
Query: 1234 DWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXXXXXXXX 1413
W+ T + ++ HT
Sbjct: 389 YWITTVYGG---------------------------KNISSHT----------------- 404
Query: 1414 NIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEARRVEATL 1593
NIIFSNG+LDPW+ GG+ N++ +++AI I GAHHLDLRA+ DP +V+ AR +E
Sbjct: 405 NIIFSNGELDPWSGGGVTKNVTDTLVAIVIPKGAHHLDLRANTAFDPTTVLLARSLEVRY 464
Query: 1594 IGKWV 1608
+ +W+
Sbjct: 465 MKQWI 469
>ref|XP_003356607.1| PREDICTED: thymus-specific serine protease [Sus scrofa].
Length = 514
Score = 90.9 bits (224), Expect = 2e-18
Identities = 120/496 (24%), Positives = 176/496 (35%), Gaps = 13/496 (2%)
Frame = +1
Query: 130 SPPEPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSF 309
+PP+ G + EQ LD FN ++F QR+ V+D++W +GP+F + G EG +
Sbjct: 55 APPKEG----WLEQPLDPFNAS--DRQSFLQRYWVNDQYWTSQDGPVFLHLGGEGSLGPG 108
Query: 310 ANNSGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXX 489
+ G HR+YG S+P E L +
Sbjct: 109 SVMRGHPAALAPVWGALVIGLEHRFYGLSIP-AEGLGMAKLRFLSSRHALADVVSARLAL 167
Query: 490 XXXXXXXXDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFF-R 666
+P I FGGSY G L+A+ R+K+PH + +
Sbjct: 168 TRLFNVSSSSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSK 227
Query: 667 DVSADFEGQGPECAQGVRDAFRQIKDLFLQG--AYDRVSQEFGTCQPLSGQKDLTQLFGF 840
+ G PEC V AF +++ G A + E G C L D +L G
Sbjct: 228 SLMNTAIGGSPECRAAVSSAFAEVERRLRAGGAALAALQAELGACGSLRRAADREELLG- 286
Query: 841 ARNAFTLLAMMDYPYPTDFVAHLPANPVQVACDRLL------SKSQRIKGLRELTGLVYN 1002
TL A++ D P + V+ C LL S GL +V +
Sbjct: 287 -----TLQALVGGAVQYDGQVGAPLS-VRQLCGLLLGDRDNSSSPAPYLGLHRAVQVVTH 340
Query: 1003 SSG----TVPCYDIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDL 1170
S G + + AQ + S + W YQ CTE + + F L
Sbjct: 341 SLGQKCLSFSRAETVAQLRVTEPQV---SSLGERQWLYQTCTEFGYFVTCEDPGCPFSQL 397
Query: 1171 PFTETLRQQYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDL 1350
P + + C ++G L TS S +Q A S
Sbjct: 398 PALPS-HLELCEQVFG-------LSTS---------------SIAQAVARTNS-----YY 429
Query: 1351 GGHTQXXXXXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDL 1530
GG T ++F NGD+DPW + L S AI I G +H LD+
Sbjct: 430 GGQT-------------PGATQVLFVNGDMDPWHVLSVTQALGPSESAILIPGASHCLDM 476
Query: 1531 RASHPADPASVVEARR 1578
P+D S+ AR+
Sbjct: 477 APEKPSDSPSLRLARQ 492
>ref|NP_001230226.1| collagen alpha-1(III) chain [Sus scrofa].
Length = 1466
Score = 48.9 bits (115), Expect = 8e-06
Identities = 45/121 (37%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Frame = +3
Query: 639 PWGPLPVL--PGRLSRL*GPGSRVCPGRAGRLPADQGPVPTGSL*QGQPGVRHLPAALGP 812
P GP V PGR GPG R PG G +D P P GS QG+ G P + GP
Sbjct: 515 PAGPRGVAGEPGRDGVPGGPGLRGMPGSPGGPGSDGKPGPPGS--QGESGRPGPPGSPGP 572
Query: 813 EGPDPALWLCPERLHPAGHDGLPVPHRLRGAPSCQPRPGGL*PTAEQEPEDQGAPRADGA 992
G P + P P G+DG P + RG P PG P E QG P G
Sbjct: 573 RG-QPGVMGFP---GPKGNDGAPGKNGERGGPGGPGLPGP--PGKNGETGPQGPPGPTGP 626
Query: 993 G 995
G
Sbjct: 627 G 627
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 43,602,752
Number of extensions: 1432625
Number of successful extensions: 6787
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6540
Number of HSP's successfully gapped: 8
Length of query: 536
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 432
Effective length of database: 8,754,644
Effective search space: 3782006208
Effective search space used: 3782006208
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_114031.2| dipeptidyl peptidase 2 precursor [Mus musculus]. 625 e-179
Alignment gi|NP_082519.1| lysosomal Pro-X carboxypeptidase precursor [Mus... 248 7e-66
Alignment gi|NP_062302.1| thymus-specific serine protease precursor [Mus ... 82 2e-15
>ref|NP_114031.2| dipeptidyl peptidase 2 precursor [Mus musculus].
Length = 506
Score = 625 bits (1612), Expect = e-179
Identities = 310/490 (63%), Positives = 345/490 (70%)
Frame = +1
Query: 139 EPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANN 318
+P F E YFEQ +DHFNFE FGNKTF QRFLVSDKFWK GEGP+FFYTGNEGD+WSFANN
Sbjct: 38 DPDFHENYFEQYMDHFNFESFGNKTFGQRFLVSDKFWKMGEGPIFFYTGNEGDIWSFANN 97
Query: 319 SGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXXXXX 498
SGF++ HRYYGKSLPFG +ST RGYT+LLTVE
Sbjct: 98 SGFMVELAAQQEALLVFAEHRYYGKSLPFGVQSTQRGYTQLLTVEQALADFAVLLQALRQ 157
Query: 499 XXXXXDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSA 678
DAP IAFGGSYGGMLSAY+RMKYPH D YQFFRDV+A
Sbjct: 158 DLGVHDAPTIAFGGSYGGMLSAYMRMKYPHLVAGALAASAPVVAVAGLGDSYQFFRDVTA 217
Query: 679 DFEGQGPECAQGVRDAFRQIKDLFLQGAYDRVSQEFGTCQPLSGQKDLTQLFGFARNAFT 858
DF GQ P+CAQ VRDAF+QIKDLFLQGAYD +SQ FGTCQ LS KDLTQLFGFARNAFT
Sbjct: 218 DFYGQSPKCAQAVRDAFQQIKDLFLQGAYDTISQNFGTCQSLSSPKDLTQLFGFARNAFT 277
Query: 859 LLAMMDYPYPTDFVAHLPANPVQVACDRLLSKSQRIKGLRELTGLVYNSSGTVPCYDIYA 1038
+LAMMDYPYPTDF+ LPANPV+V C RLL++ QRI GLR L GLVYNSSGT PCYDIY
Sbjct: 278 VLAMMDYPYPTDFLGPLPANPVKVGCQRLLNEGQRIMGLRALAGLVYNSSGTEPCYDIYR 337
Query: 1039 QYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMWG 1218
YQ+CADPTGCG+G +A+AWDYQACTEINLTF SNNV+D+FP++PF+E LRQQYCLD WG
Sbjct: 338 LYQSCADPTGCGTGSDARAWDYQACTEINLTFDSNNVTDMFPEIPFSEELRQQYCLDTWG 397
Query: 1219 VWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXXX 1398
VWPRQDWLQTSF GG +
Sbjct: 398 VWPRQDWLQTSFW-------------------------------GGDLK----------- 415
Query: 1399 XXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEARR 1578
NIIFSNGDLDPWA GGIQSNLS SV+A+TI GGAHHLDLRAS+ DP SVVE R+
Sbjct: 416 --AASNIIFSNGDLDPWAGGGIQSNLSTSVIAVTIQGGAHHLDLRASNSEDPPSVVEVRK 473
Query: 1579 VEATLIGKWV 1608
+E+TLI +WV
Sbjct: 474 LESTLIREWV 483
>ref|NP_082519.1| lysosomal Pro-X carboxypeptidase precursor [Mus musculus].
Length = 491
Score = 248 bits (634), Expect = 7e-66
Identities = 159/502 (31%), Positives = 235/502 (46%), Gaps = 11/502 (2%)
Frame = +1
Query: 136 PEPG----FREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVW 303
P+P + +YFEQ +DHF F +TF+QR+LV+DK W++ G + FYTGNEGD+
Sbjct: 38 PDPAVARKYSVLYFEQKVDHFGFADM--RTFKQRYLVADKHWQRNGGSILFYTGNEGDIV 95
Query: 304 SFANNSGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRG-YTELLTVEXXXXXXXXX 480
F NN+GF+ HRYYG+SLPFG+ S + LT E
Sbjct: 96 WFCNNTGFMWDVAEELKAMLVFAEHRYYGESLPFGQDSFKDSQHLNFLTSEQALADFAEL 155
Query: 481 XXXXXXXXXXXDA-PAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQ 657
P IA GGSYGGML+A+ RMKYPH +
Sbjct: 156 IRHLEKTIPGAQGQPVIAIGGSYGGMLAAWFRMKYPHIVVGALAASAPIWQLDGMVPCGE 215
Query: 658 FFRDVSADFEGQGPECAQGVRDAFRQIKDLFLQGA-YDRVSQEFGTCQPLSGQKDLTQLF 834
F + V+ DF GP C++ +R ++ I L G+ ++ C PL+ +K + L
Sbjct: 216 FMKIVTNDFRKSGPYCSESIRKSWNVIDKLSGSGSGLQSLTNILHLCSPLTSEK-IPTLK 274
Query: 835 GFARNAFTLLAMMDYPYPTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYN 1002
G+ + LAM++YPY +F+ LPA P++ C L +S + ++ + + + YN
Sbjct: 275 GWIAETWVNLAMVNYPYACNFLQPLPAWPIKEVCQYLKNPNVSDTVLLQNIFQALSVYYN 334
Query: 1003 SSGTVPCYDIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTE 1182
SG C +I Q G + W +QACTE+ + F +N + D+F +
Sbjct: 335 YSGQAACLNI---SQTTTSSLG------SMGWSFQACTEMVMPFCTNGIDDMFEPFLWDL 385
Query: 1183 TLRQQYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHT 1362
C + WGV PR W+ T + SHS
Sbjct: 386 EKYSNDCFNQWGVKPRPHWMTTMYGGKNIS--------SHS------------------- 418
Query: 1363 QXXXXXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASH 1542
NIIFSNG+LDPW+ GG+ +++ +++AI IH GAHHLDLRA +
Sbjct: 419 -----------------NIIFSNGELDPWSGGGVTRDITDTLVAINIHDGAHHLDLRAHN 461
Query: 1543 PADPASVVEARRVEATLIGKWV 1608
DP+SV+ +R +E + KW+
Sbjct: 462 AFDPSSVLLSRLLEVKHMKKWI 483
>ref|NP_062302.1| thymus-specific serine protease precursor [Mus musculus].
Length = 509
Score = 81.6 bits (200), Expect = 2e-15
Identities = 113/498 (22%), Positives = 177/498 (35%), Gaps = 12/498 (2%)
Frame = +1
Query: 151 REVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFI 330
++ + EQ LD FN +TF QR+ V+D+ + P+F + G EG + + +G
Sbjct: 57 KQGWLEQPLDPFNAS--DRRTFLQRYWVNDQHRTGQDVPVFLHIGGEGSLGPGSVMAGHP 114
Query: 331 LXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXXXXXXXXX 510
HR+YG S+P G L +
Sbjct: 115 AALAPAWGALVISLEHRFYGLSMPAGGLDLAL-LRYLSSRHALADVASARQALSGLLNVS 173
Query: 511 XDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFF-RDVSADFE 687
+P I FGGSY G L+ + R+K+PH Q R ++
Sbjct: 174 SSSPWICFGGSYAGSLATWARLKFPHLVFAAVASSAPLSAVVDFSAYNQVVARSLTQVAI 233
Query: 688 GQGPECAQGVRDAFRQIKDLFLQG--AYDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTL 861
G EC AF +++ L G A + +E G C L +D +L G L
Sbjct: 234 GGSLECLAAASTAFTEVERLLRAGPAAQAVLREELGACGSLDLTEDQAELLG------AL 287
Query: 862 LAMMDYPYPTDFVAHLPANPVQVACDRLL------SKSQRIKGLRELTGLVYNSSGTVPC 1023
A++ D A P + V+ C LL S+S GLR +V S G C
Sbjct: 288 QALVGGTVQYDGQAGAPLS-VRQLCGLLLGKWGNRSRSTPYLGLRRAVQIVLRSMGQ-KC 345
Query: 1024 YDIYAQYQACADPTGCG---SGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQ 1194
+++ + A + SG + W YQ CTE + + F LP +
Sbjct: 346 LS-FSRAETVAQLSNTEPQVSGVGDRQWLYQTCTEFGFYVTCEGLQCPFSQLP-ALPFQL 403
Query: 1195 QYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXX 1374
+ C ++G+ P S +Q A S GG +
Sbjct: 404 ELCEQVFGLSP----------------------ASVAQAVAQTNS-----YYGGQS---- 432
Query: 1375 XXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADP 1554
++F NGD DPW + +L S A+ I +H D+ P+D
Sbjct: 433 ---------PGATQVLFVNGDTDPWHVLSVTQDLGLSEPALLIPSASHCFDMAPMRPSDS 483
Query: 1555 ASVVEARRVEATLIGKWV 1608
S+ R+ + + W+
Sbjct: 484 PSLRLGRQKISQQLQDWL 501
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 57,439,328
Number of extensions: 1801182
Number of successful extensions: 8099
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7831
Number of HSP's successfully gapped: 6
Length of query: 536
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 430
Effective length of database: 12,433,743
Effective search space: 5346509490
Effective search space used: 5346509490
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037511.2| dipeptidyl peptidase 2 preproprotein [Homo sapi... 629 e-180
Alignment gi|NP_005031.1| lysosomal Pro-X carboxypeptidase isoform 1 prep... 257 2e-68
Alignment gi|NP_955450.2| lysosomal Pro-X carboxypeptidase isoform 2 prep... 252 8e-67
Alignment gi|NP_005856.1| thymus-specific serine protease precursor [Homo... 91 2e-18
Alignment gi|NP_000484.2| collagen alpha-1(X) chain precursor [Homo sapie... 53 9e-07
>ref|NP_037511.2| dipeptidyl peptidase 2 preproprotein [Homo sapiens].
Length = 492
Score = 629 bits (1623), Expect = e-180
Identities = 312/491 (63%), Positives = 352/491 (71%)
Frame = +1
Query: 136 PEPGFREVYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFAN 315
P+PGF+E +F+Q LDHFNFERFGNKTF QRFLVSD+FW +GEGP+FFYTGNEGDVW+FAN
Sbjct: 27 PDPGFQERFFQQRLDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFAN 86
Query: 316 NSGFILXXXXXXXXXXXXXXHRYYGKSLPFGERSTWRGYTELLTVEXXXXXXXXXXXXXX 495
NS F+ HRYYGKSLPFG +ST RG+TELLTVE
Sbjct: 87 NSAFVAELAAERGALLVFAEHRYYGKSLPFGAQSTQRGHTELLTVEQALADFAELLRALR 146
Query: 496 XXXXXXDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVS 675
DAPAIAFGGSYGGMLSAYLRMKYPH D QFFRDV+
Sbjct: 147 RDLGAQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDVT 206
Query: 676 ADFEGQGPECAQGVRDAFRQIKDLFLQGAYDRVSQEFGTCQPLSGQKDLTQLFGFARNAF 855
ADFEGQ P+C QGVR+AFRQIKDLFLQGAYD V EFGTCQPLS +KDLTQLF FARNAF
Sbjct: 207 ADFEGQSPKCTQGVREAFRQIKDLFLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARNAF 266
Query: 856 TLLAMMDYPYPTDFVAHLPANPVQVACDRLLSKSQRIKGLRELTGLVYNSSGTVPCYDIY 1035
T+LAMMDYPYPTDF+ LPANPV+V CDRLLS++QRI GLR L GLVYN+SG+ CYDIY
Sbjct: 267 TVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRALAGLVYNASGSEHCYDIY 326
Query: 1036 AQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMW 1215
Y +CADPTGCG+GP+A+AWDYQACTEINLTF+SNNV+D+FPDLPFT+ LRQ+YCLD W
Sbjct: 327 RLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYCLDTW 386
Query: 1216 GVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXX 1395
GVWPR DWL TSF GG +
Sbjct: 387 GVWPRPDWLLTSFW-------------------------------GGDLR---------- 405
Query: 1396 XXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEAR 1575
NIIFSNG+LDPWA GGI+ NLSASV+A+TI GGAHHLDLRASHP DPASVVEAR
Sbjct: 406 ---AASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGAHHLDLRASHPEDPASVVEAR 462
Query: 1576 RVEATLIGKWV 1608
++EAT+IG+WV
Sbjct: 463 KLEATIIGEWV 473
>ref|NP_005031.1| lysosomal Pro-X carboxypeptidase isoform 1 preproprotein [Homo
sapiens].
Length = 496
Score = 257 bits (656), Expect = 2e-68
Identities = 158/491 (32%), Positives = 228/491 (46%), Gaps = 7/491 (1%)
Frame = +1
Query: 157 VYFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILX 336
+YF+Q +DHF F KTF QR+LV+DK+WKK G + FYTGNEGD+ F NN+GF+
Sbjct: 51 LYFQQKVDHFGFNTV--KTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWD 108
Query: 337 XXXXXXXXXXXXXHRYYGKSLPFGERS--TWRGYTELLTVEXXXXXXXXXXXXXXXXXXX 510
HRYYG+SLPFG+ S R L + +
Sbjct: 109 VAEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGA 168
Query: 511 XDAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSADFEG 690
+ P IA GGSYGGML+A+ RMKYPH F + V+ DF
Sbjct: 169 ENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRK 228
Query: 691 QGPECAQGVRDAFRQIKDLFLQGA-YDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTLLA 867
GP C++ + ++ I L G+ ++ C PL+ Q D+ L + + LA
Sbjct: 229 SGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQ-DIQHLKDWISETWVNLA 287
Query: 868 MMDYPYPTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYNSSGTVPCYDIY 1035
M+DYPY ++F+ LPA P++V C L +S S ++ + + + YN SG V C +I
Sbjct: 288 MVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNIS 347
Query: 1036 AQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMW 1215
+ G W YQACTE+ + F +N V D+F + C W
Sbjct: 348 ETATSSLGTLG---------WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQW 398
Query: 1216 GVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXX 1395
GV PR W+ T + ++ HT
Sbjct: 399 GVRPRPSWITTMYGG---------------------------KNISSHT----------- 420
Query: 1396 XXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEAR 1575
NI+FSNG+LDPW+ GG+ +++ +++A+TI GAHHLDLR + DP SV+ AR
Sbjct: 421 ------NIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLAR 474
Query: 1576 RVEATLIGKWV 1608
+E + W+
Sbjct: 475 SLEVRHMKNWI 485
>ref|NP_955450.2| lysosomal Pro-X carboxypeptidase isoform 2 preproprotein [Homo
sapiens].
Length = 517
Score = 252 bits (643), Expect = 8e-67
Identities = 157/490 (32%), Positives = 225/490 (45%), Gaps = 7/490 (1%)
Frame = +1
Query: 160 YFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILXX 339
Y L+DHF F KTF QR+LV+DK+WKK G + FYTGNEGD+ F NN+GF+
Sbjct: 73 YKTPLVDHFGFNTV--KTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDV 130
Query: 340 XXXXXXXXXXXXHRYYGKSLPFGERS--TWRGYTELLTVEXXXXXXXXXXXXXXXXXXXX 513
HRYYG+SLPFG+ S R L + +
Sbjct: 131 AEELKAMLVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAE 190
Query: 514 DAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFFRDVSADFEGQ 693
+ P IA GGSYGGML+A+ RMKYPH F + V+ DF
Sbjct: 191 NQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTTDFRKS 250
Query: 694 GPECAQGVRDAFRQIKDLFLQGA-YDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTLLAM 870
GP C++ + ++ I L G+ ++ C PL+ Q D+ L + + LAM
Sbjct: 251 GPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPLTSQ-DIQHLKDWISETWVNLAM 309
Query: 871 MDYPYPTDFVAHLPANPVQVACDRL----LSKSQRIKGLRELTGLVYNSSGTVPCYDIYA 1038
+DYPY ++F+ LPA P++V C L +S S ++ + + + YN SG V C +I
Sbjct: 310 VDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKCLNISE 369
Query: 1039 QYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQQYCLDMWG 1218
+ G W YQACTE+ + F +N V D+F + C WG
Sbjct: 370 TATSSLGTLG---------WSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWG 420
Query: 1219 VWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXXXXXXXXXX 1398
V PR W+ T + ++ HT
Sbjct: 421 VRPRPSWITTMYGG---------------------------KNISSHT------------ 441
Query: 1399 XXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADPASVVEARR 1578
NI+FSNG+LDPW+ GG+ +++ +++A+TI GAHHLDLR + DP SV+ AR
Sbjct: 442 -----NIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTKNALDPMSVLLARS 496
Query: 1579 VEATLIGKWV 1608
+E + W+
Sbjct: 497 LEVRHMKNWI 506
>ref|NP_005856.1| thymus-specific serine protease precursor [Homo sapiens].
Length = 514
Score = 91.3 bits (225), Expect = 2e-18
Identities = 115/483 (23%), Positives = 174/483 (36%), Gaps = 15/483 (3%)
Frame = +1
Query: 160 YFEQLLDHFNFERFGNKTFRQRFLVSDKFWKKGEGPLFFYTGNEGDVWSFANNSGFILXX 339
+ EQLLD FN ++F QR+ V+D+ W +GP+F + G EG + + G
Sbjct: 61 WLEQLLDPFNVS--DRRSFLQRYWVNDQHWVGQDGPIFLHLGGEGSLGPGSVMRGHPAAL 118
Query: 340 XXXXXXXXXXXXHRYYGKSLPFG--ERSTWRGYTELLTVEXXXXXXXXXXXXXXXXXXXX 513
HR+YG S+P G E + R + L +
Sbjct: 119 APAWGALVISLEHRFYGLSIPAGGLEMAQLRFLSSRLALADVVSARLALSRLFNISS--- 175
Query: 514 DAPAIAFGGSYGGMLSAYLRMKYPHXXXXXXXXXXXXXXXXXXXDPYQFF-RDVSADFEG 690
+P I FGGSY G L+A+ R+K+PH + R + + G
Sbjct: 176 SSPWICFGGSYAGSLAAWARLKFPHLIFASVASSAPVRAVLDFSEYNDVVSRSLMSTAIG 235
Query: 691 QGPECAQGVRDAFRQIKDLFLQG--AYDRVSQEFGTCQPLSGQKDLTQLFGFARNAFTLL 864
EC V AF +++ G A + E C PL ++ +L G L
Sbjct: 236 GSLECRAAVSVAFAEVERRLRSGGAAQAALRTELSACGPLGRAENQAELLG------ALQ 289
Query: 865 AMMDYPYPTDFVAHLPANPVQVACDRLL------SKSQRIKGLRELTGLVYNSSG----T 1014
A++ D P + V+ C LL S S GLR +V +S G +
Sbjct: 290 ALVGGVVQYDGQTGAPLS-VRQLCGLLLGGGGNRSHSTPYCGLRRAVQIVLHSLGQKCLS 348
Query: 1015 VPCYDIYAQYQACADPTGCGSGPNAKAWDYQACTEINLTFSSNNVSDIFPDLPFTETLRQ 1194
+ AQ ++ SG + W YQ CTE + N F LP + +
Sbjct: 349 FSRAETVAQLRSTEPQL---SGVGDRQWLYQTCTEFGFYVTCENPRCPFSQLPALPS-QL 404
Query: 1195 QYCLDMWGVWPRQDWLQTSFXXXXXXXXXXXXXVSHSQDTAGV*SGPCITDLGGHTQXXX 1374
C ++G+ +S +Q A S GG T
Sbjct: 405 DLCEQVFGL----------------------SALSVAQAVAQTNS-----YYGGQT---- 433
Query: 1375 XXXXXXXXXXXXXNIIFSNGDLDPWARGGIQSNLSASVLAITIHGGAHHLDLRASHPADP 1554
++F NGD DPW + L +S + I G+H LD+ P+D
Sbjct: 434 ---------PGANKVLFVNGDTDPWHVLSVTQALGSSESTLLIRTGSHCLDMAPERPSDS 484
Query: 1555 ASV 1563
S+
Sbjct: 485 PSL 487
>ref|NP_000484.2| collagen alpha-1(X) chain precursor [Homo sapiens].
Length = 680
Score = 52.8 bits (125), Expect = 9e-07
Identities = 63/209 (30%), Positives = 79/209 (37%), Gaps = 14/209 (6%)
Frame = +3
Query: 651 LPVLPGRLSRL*GPGSRVCPGRAGR-----LPADQGPVPTGSL*QGQPGVRHLPAALGPE 815
+P PG+ PG R PG G + +G + G+ G+PG R LP GP
Sbjct: 154 VPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGA--PGRPGERGLPGPQGPT 211
Query: 816 GPDPALWLCPERLHPAGHDGLPVPHRLRG--------APSCQPRPGGL*PTAEQEPEDQG 971
GP P + G +G+P ++G P P P G P E+ PE G
Sbjct: 212 GPSG-----PPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQG--PPGERGPEGIG 264
Query: 972 APRADGAGVQLLWHGALL*HLCAVPGLCRPHRLWLRSQCQGLGLPGLH*DQPDFFQQQCI 1151
P A GA Q G L PG+ P G G PGL P ++
Sbjct: 265 KPGAAGAPGQPGIPGTK--GLPGAPGIAGP------PGPPGFGKPGL----PGLKGERGP 312
Query: 1152 GHLP-*PAFHGNSPPAVLPGHVGRVAPAG 1235
LP P G PA LPG G P G
Sbjct: 313 AGLPGGPGAKGEQGPAGLPGKPGLTGPPG 341
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 68,577,687
Number of extensions: 2206364
Number of successful extensions: 10632
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 10185
Number of HSP's successfully gapped: 8
Length of query: 536
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 429
Effective length of database: 14,770,016
Effective search space: 6336336864
Effective search space used: 6336336864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008627
(1608 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896476.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 218 7e-54
gb|GL892523.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 196 3e-47
>gb|GL896476.1| Sus scrofa unplaced genomic scaffold chrU_scaffold812
Length = 3984
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 795 ccagccgctctcgggccagaaggacctgacccagctctttggctttgcccggaacgcctt 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ccagccgctctcgggccagaaggacctgacccagctctttggctttgcccggaacgcctt 60
Query: 855 caccctgctggccatgatggattacccgtaccccaccgacttcgtggcgc 904
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caccctgctggccatgatggattacccgtaccccaccgacttcgtggcgc 110
Score = 200 bits (101), Expect = 2e-48
Identities = 104/105 (99%)
Strand = Plus / Plus
Query: 1357 cacacccagtccccaccactgcttactctgtccctttcagaactcacagctgccagcaac 1416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1315 cacacccagtccccaccactgcttactctgtccctttcagaactcacagctgccagcaac 1374
Query: 1417 atcatcttctccaatggtgacctggacccctgggcaaggggtggg 1461
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1375 atcatcttctccaatggtgacctggacccctgggcaagcggtggg 1419
Score = 155 bits (78), Expect = 9e-35
Identities = 94/102 (92%)
Strand = Plus / Plus
Query: 1178 cggaaactctccgccagcagtactgcctggacatgtggggcgtgtggccccggcaggact 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1106 cggaaactctccgccagcagtactgcctggacatgtggggcgtgtggccccggcaggact 1165
Query: 1238 ggctgcagaccagctttnnnnnnnncggtgaggctgcatgca 1279
||||||||||||||||| |||||||||||||||||
Sbjct: 1166 ggctgcagaccagctttggggggggcggtgaggctgcatgca 1207
Score = 155 bits (78), Expect = 9e-35
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1527 cctcagggcgtcccacccagcagaccccgcatccgtcgtggaggctcgcagggtggaggc 1586
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2029 cctcagggcgtcccacccagcagaccccgcatccgtcgtggaggctcgcaggttggaggc 2088
Query: 1587 caccctcatcggcaagtgggtt 1608
||||||||||||||||||||||
Sbjct: 2089 caccctcatcggcaagtgggtt 2110
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 924 ccaggtggcctgtgaccgactgctgagcaagagccagaggatcaaggggctccgagagct 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccaggtggcctgtgaccgactgctgagcaagagccagaggatcaaggggctccgagagct 438
Query: 984 gacggg 989
||||||
Sbjct: 439 gacggg 444
Score = 107 bits (54), Expect = 2e-20
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 1105 caggcctgcactgagatcaacctgactttttccagcaacaatgtatcggacatc 1158
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 caggcctgcactgagatcaacctgactttttccagcaacaatgtatcggacatc 1005
Score = 103 bits (52), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 1461 gatccagagcaacctgagtgcctcagtcctcgccatcaccatccatnnnnnnncacatca 1520
|||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1758 gatccagagcaacctgagtgcctcagtcctcgccatcaccatccatgggggggcacatca 1817
Query: 1521 cctggacctcagg 1533
|||||||||||||
Sbjct: 1818 cctggacctcagg 1830
Score = 71.9 bits (36), Expect = 1e-09
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 1073 gctcaggtcccaatgccaaggcctgggactaccagg 1108
||||||||||||||||||||||||||||||||||||
Sbjct: 824 gctcaggtcccaatgccaaggcctgggactaccagg 859
>gb|GL892523.1| Sus scrofa unplaced genomic scaffold chrU_scaffold138
Length = 177
Score = 196 bits (99), Expect = 3e-47
Identities = 99/99 (100%)
Strand = Plus / Minus
Query: 236 cagacaagttctggaagaagggcgaggggcctttgttcttctacacgggcaacgaggggg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 cagacaagttctggaagaagggcgaggggcctttgttcttctacacgggcaacgaggggg 47
Query: 296 acgtgtggtccttcgccaacaactcggggttcatcctgg 334
|||||||||||||||||||||||||||||||||||||||
Sbjct: 46 acgtgtggtccttcgccaacaactcggggttcatcctgg 8
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,968,149
Number of extensions: 397
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 9
Length of query: 1608
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1586
Effective length of database: 2,808,408,574
Effective search space: 4454135998364
Effective search space used: 4454135998364
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)