Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069726.1| ubiquitin-conjugating enzyme E2 N [Bos tauru... 310 1e-84
Alignment gi|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taur... 138 8e-33
Alignment gi|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 137 1e-32
Alignment gi|XP_002692419.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 137 1e-32
Alignment gi|NP_001033123.1| ubiquitin-conjugating enzyme E2 T [Bos tauru... 135 7e-32
Alignment gi|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taur... 135 7e-32
Alignment gi|XP_002692269.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 134 9e-32
Alignment gi|XP_002692264.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 134 9e-32
Alignment gi|XP_002692263.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 134 9e-32
Alignment gi|XP_002692262.1| PREDICTED: ubiquitin-conjugating enzyme E2D ... 134 9e-32
>ref|NP_001069726.1| ubiquitin-conjugating enzyme E2 N [Bos taurus].
Length = 152
Score = 310 bits (794), Expect = 1e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|NP_001039961.1| ubiquitin-conjugating enzyme E2 D2 [Bos taurus].
Length = 147
Score = 138 bits (347), Expect = 8e-33
Identities = 68/144 (47%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + AR WT+ YAM
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYAM 147
>ref|XP_002692420.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 147
Score = 137 bits (345), Expect = 1e-32
Identities = 67/142 (47%), Positives = 88/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P E + ++ I GP DSP++GG F L + P +YP P
Sbjct: 6 INKELSDLARDPPAQCSAGPVEDDMFHWEATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 65
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 66 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 126 MYKTDRDKYNRVSREWTQKYAM 147
>ref|XP_002692419.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 147
Score = 137 bits (345), Expect = 1e-32
Identities = 67/142 (47%), Positives = 88/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P E + ++ I GP DSP++GG F L + P +YP P
Sbjct: 6 INKELSDLARDPPAQCSAGPVEDDMFHWEATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 65
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 66 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 125
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 126 MYKTDRDKYNRVSREWTQKYAM 147
>ref|NP_001033123.1| ubiquitin-conjugating enzyme E2 T [Bos taurus].
Length = 195
Score = 135 bits (339), Expect = 7e-32
Identities = 65/146 (44%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Frame = +1
Query: 97 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 276
R+ +E L AEP PGI D I G ++P+E G FKLE+ +PE YP
Sbjct: 6 RLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEP 65
Query: 277 PKVRFMTKIYHPNVDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLA 444
P++RF+T IYHPN+D GRICLD+L K W P+L I T+L IQ L++ PNPDDPL
Sbjct: 66 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLM 125
Query: 445 NDVAEQWKTNEAQAIETARAWTRLYA 522
D++ ++K N+ + AR WT +A
Sbjct: 126 ADISSEFKYNKPVFFKNARQWTEKHA 151
>ref|NP_001033256.1| ubiquitin-conjugating enzyme E2 D1 [Bos taurus].
Length = 147
Score = 135 bits (339), Expect = 7e-32
Identities = 66/144 (45%), Positives = 90/144 (62%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DS ++GG F L + P +YP
Sbjct: 4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PK+ F TKIYHPN++ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A+ +K+++ + AR WT+ YAM
Sbjct: 124 AQIYKSDKEKYNRHAREWTQKYAM 147
>ref|XP_002692269.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like, partial [Bos
taurus].
Length = 151
Score = 134 bits (338), Expect = 9e-32
Identities = 66/142 (46%), Positives = 87/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P + ++ I GP DSP++GG F L + P +YP P
Sbjct: 10 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 69
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 70 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 129
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 130 MYKTDRDKYNRVSREWTQKYAM 151
>ref|XP_002692264.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 134 bits (338), Expect = 9e-32
Identities = 66/142 (46%), Positives = 87/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P + ++ I GP DSP++GG F L + P +YP P
Sbjct: 22 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 81
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 82 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 141
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 142 MYKTDRDKYNRVSREWTQKYAM 163
>ref|XP_002692263.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 134 bits (338), Expect = 9e-32
Identities = 66/142 (46%), Positives = 87/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P + ++ I GP DSP++GG F L + P +YP P
Sbjct: 22 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 81
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 82 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 141
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 142 MYKTDRDKYNRVSREWTQKYAM 163
>ref|XP_002692262.1| PREDICTED: ubiquitin-conjugating enzyme E2D 3-like [Bos taurus].
Length = 163
Score = 134 bits (338), Expect = 9e-32
Identities = 66/142 (46%), Positives = 87/142 (61%)
Frame = +1
Query: 100 IIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 279
I KE L +P A P + ++ I GP DSP++GG F L + P +YP P
Sbjct: 22 INKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKLP 81
Query: 280 KVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAE 459
KV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++A
Sbjct: 82 KVAFTTRIYHPNINSNGSICLDILRSQWSPALIISKVLLSICSLLCDPNPDDPLVPEIAR 141
Query: 460 QWKTNEAQAIETARAWTRLYAM 525
+KT+ + +R WT+ YAM
Sbjct: 142 MYKTDRDKYNRVSREWTQKYAM 163
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,952,818
Number of extensions: 827807
Number of successful extensions: 2246
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 2224
Number of HSP's successfully gapped: 82
Length of query: 306
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,306,398
Effective search space: 2918505192
Effective search space used: 2918505192
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534272.1| PREDICTED: similar to ubiquitin-conjugating enz... 308 6e-84
Alignment gi|XP_854608.1| PREDICTED: similar to ubiquitin-conjugating enz... 307 8e-84
Alignment gi|XP_851403.1| PREDICTED: similar to ubiquitin-conjugating enz... 307 1e-83
Alignment gi|XP_534224.2| PREDICTED: similar to ubiquitin-conjugating enz... 303 2e-82
Alignment gi|XP_536365.1| PREDICTED: similar to ubiquitin-conjugating enz... 297 8e-81
Alignment gi|XP_853730.1| PREDICTED: similar to ubiquitin-conjugating enz... 293 2e-79
Alignment gi|XP_854681.1| PREDICTED: similar to ubiquitin-conjugating enz... 291 6e-79
Alignment gi|XP_533990.2| PREDICTED: similar to ubiquitin-conjugating enz... 282 3e-76
Alignment gi|XP_537058.2| PREDICTED: similar to ubiquitin-conjugating enz... 271 6e-73
Alignment gi|XP_865856.1| PREDICTED: similar to ubiquitin-conjugating enz... 261 9e-70
>ref|XP_534272.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 152
Score = 308 bits (788), Expect = 6e-84
Identities = 151/152 (99%), Positives = 151/152 (99%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAP PDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPTPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_854608.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 284
Score = 307 bits (787), Expect = 8e-84
Identities = 167/214 (78%), Positives = 177/214 (82%), Gaps = 2/214 (0%)
Frame = +1
Query: 31 ERSRRQDQRPYSGFDKMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQD 210
ERSR Q+QRP G D+ AGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQD
Sbjct: 73 ERSRSQEQRPNWGSDRTAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQD 132
Query: 211 SPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTV 390
SP EGGTF+LELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR+CLDILKDKWSP LQIRTV
Sbjct: 133 SPLEGGTFELELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRVCLDILKDKWSP-LQIRTV 191
Query: 391 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI*ID*SSSVHHFS 570
LL IQALLSA NPDDPLA DV EQWKT+EAQAIETARA TRLYAMNNI + S
Sbjct: 192 LLWIQALLSALNPDDPLAKDVVEQWKTSEAQAIETARARTRLYAMNNI-FKIDLIIKCAS 250
Query: 571 CSAKTSSFFV-CI*WTQS*-KHYRIKAQTSSVLW 666
FF+ C+ + + YRIKAQTSSVLW
Sbjct: 251 LLLFCQDFFLFCLHLMDTVLETYRIKAQTSSVLW 284
>ref|XP_851403.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 225
Score = 307 bits (786), Expect = 1e-83
Identities = 153/168 (91%), Positives = 158/168 (94%)
Frame = +1
Query: 31 ERSRRQDQRPYSGFDKMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQD 210
ERS+ +QRP G DK AGLPRRIIKETQRLLAEPVPGI+AEPDESNARYFHVVIAGPQ
Sbjct: 59 ERSQGPEQRPNPGSDKTAGLPRRIIKETQRLLAEPVPGIRAEPDESNARYFHVVIAGPQG 118
Query: 211 SPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTV 390
SPFEGGTFKLELFLPEE PMAAPKVRFMTKIYHPNVDKLGRICLD+LKDKWSPALQIRTV
Sbjct: 119 SPFEGGTFKLELFLPEECPMAAPKVRFMTKIYHPNVDKLGRICLDVLKDKWSPALQIRTV 178
Query: 391 LLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LLSIQA LSAPNPDDPLAND AEQWKTN+AQAIETARAWTRLYAMNNI
Sbjct: 179 LLSIQA-LSAPNPDDPLANDEAEQWKTNDAQAIETARAWTRLYAMNNI 225
>ref|XP_534224.2| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 152
Score = 303 bits (775), Expect = 2e-82
Identities = 149/152 (98%), Positives = 149/152 (98%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQ SPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQGSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI TVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQICTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNE QAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNETQAIETARAWTRLYAMNNI 152
>ref|XP_536365.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N isoform 1
[Canis familiaris].
Length = 152
Score = 297 bits (761), Expect = 8e-81
Identities = 146/152 (96%), Positives = 147/152 (96%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKE QRLLAEPVPGIKAEPDESNARYFHVVIAGPQD PFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKEPQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDFPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKV FMTKIYHPN+DKLGRICLDILKDKWSP LQI TVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVCFMTKIYHPNIDKLGRICLDILKDKWSPTLQICTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_853730.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 152
Score = 293 bits (749), Expect = 2e-79
Identities = 145/152 (95%), Positives = 146/152 (96%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLP RIIKETQ LLAEPVPGIKAEPDESNARYFH+VIAG QDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPCRIIKETQHLLAEPVPGIKAEPDESNARYFHMVIAGLQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EY MAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI TVLLSIQALLSAPNPDDP
Sbjct: 61 EYLMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIHTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDV EQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVVEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_854681.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 144
Score = 291 bits (745), Expect = 6e-79
Identities = 142/142 (100%), Positives = 142/142 (100%)
Frame = +1
Query: 109 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR 288
ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR
Sbjct: 3 ETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR 62
Query: 289 FMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 468
FMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK
Sbjct: 63 FMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWK 122
Query: 469 TNEAQAIETARAWTRLYAMNNI 534
TNEAQAIETARAWTRLYAMNNI
Sbjct: 123 TNEAQAIETARAWTRLYAMNNI 144
>ref|XP_533990.2| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 146
Score = 282 bits (722), Expect = 3e-76
Identities = 139/146 (95%), Positives = 140/146 (95%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLP RIIKETQRLLAEPVPGIKAEPDESN RYFHVVIAGPQDSP EGGTFKLELFLPE
Sbjct: 1 MAGLPCRIIKETQRLLAEPVPGIKAEPDESNVRYFHVVIAGPQDSPCEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYP AAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQI TVLLSIQALLSAPNPDDP
Sbjct: 61 EYPTAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIHTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRL 516
LANDV EQWKT+EAQAIETARAWTRL
Sbjct: 121 LANDVTEQWKTSEAQAIETARAWTRL 146
>ref|XP_537058.2| PREDICTED: similar to ubiquitin-conjugating enzyme E2N [Canis
familiaris].
Length = 183
Score = 271 bits (693), Expect = 6e-73
Identities = 141/167 (84%), Positives = 147/167 (88%), Gaps = 4/167 (2%)
Frame = +1
Query: 46 QDQRPYSGFDKMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARY----FHVVIAGPQDS 213
+DQRP G DK+AGLP RIIKETQ LLAEPVPGIKAEPDESNARY +VVIAGPQDS
Sbjct: 22 RDQRPNLGSDKIAGLPHRIIKETQYLLAEPVPGIKAEPDESNARYECGHMNVVIAGPQDS 81
Query: 214 PFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVL 393
PFEGGTFKLELFLPEEY MAAP+VRFMTKIY+PNVDK GRICLDILKDKW IRTVL
Sbjct: 82 PFEGGTFKLELFLPEEYLMAAPQVRFMTKIYYPNVDKWGRICLDILKDKW-----IRTVL 136
Query: 394 LSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
L IQALLSA NPDDPLANDVAEQWKTN+A AIETARAWTRLYAMNNI
Sbjct: 137 LWIQALLSALNPDDPLANDVAEQWKTNKAHAIETARAWTRLYAMNNI 183
>ref|XP_865856.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2N isoform 2
[Canis familiaris].
Length = 144
Score = 261 bits (666), Expect = 9e-70
Identities = 131/152 (86%), Positives = 134/152 (88%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MA LP RII+ETQRLLAEP DESN RYFHVVI GPQDSPFEGGTFKLE FLPE
Sbjct: 1 MARLPHRIIEETQRLLAEP--------DESNPRYFHVVITGPQDSPFEGGTFKLEPFLPE 52
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPM PKVRFMTKIYHPNVD LGRICLDIL+ KWSPALQI TVLLSIQALLSAPNPDDP
Sbjct: 53 EYPMVTPKVRFMTKIYHPNVDMLGRICLDILEGKWSPALQIHTVLLSIQALLSAPNPDDP 112
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTN+AQAIETARAWTRLYAMNNI
Sbjct: 113 LANDVAEQWKTNKAQAIETARAWTRLYAMNNI 144
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,400,668
Number of extensions: 853739
Number of successful extensions: 2221
Number of sequences better than 1.0e-05: 76
Number of HSP's gapped: 2185
Number of HSP's successfully gapped: 77
Length of query: 306
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 204
Effective length of database: 15,474,232
Effective search space: 3156743328
Effective search space used: 3156743328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126772.2| PREDICTED: ubiquitin-conjugating enzyme E2 N... 310 7e-85
Alignment gi|XP_001928631.1| PREDICTED: ubiquitin-conjugating enzyme E2 N... 266 9e-72
Alignment gi|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 137 1e-32
Alignment gi|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 136 1e-32
Alignment gi|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D... 136 1e-32
Alignment gi|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scro... 136 1e-32
Alignment gi|NP_001072142.1| UB2D1 [Sus scrofa]. 135 4e-32
Alignment gi|NP_001072139.1| UBC1 [Sus scrofa]. 134 7e-32
Alignment gi|XP_003130657.1| PREDICTED: ubiquitin-conjugating enzyme E2 T... 134 7e-32
Alignment gi|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D... 132 3e-31
>ref|XP_003126772.2| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Sus scrofa].
Length = 152
Score = 310 bits (794), Expect = 7e-85
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_001928631.1| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Sus scrofa].
Length = 152
Score = 266 bits (681), Expect = 9e-72
Identities = 128/152 (84%), Positives = 138/152 (90%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MA LP RI KETQ LL EP+PGIKAEPDE+NA YFHVVI GPQDSPFEGGTFKLELF+PE
Sbjct: 1 MARLPFRIKKETQWLLKEPIPGIKAEPDETNAHYFHVVIDGPQDSPFEGGTFKLELFVPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYP+ PK RF+TKIYHPN+DKLGRICLDILK+ WSPALQIRTVLLSIQALL PNPDDP
Sbjct: 61 EYPIKPPKARFVTKIYHPNIDKLGRICLDILKENWSPALQIRTVLLSIQALLGDPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LA DVA+QWKTN+AQAIETARAWTRLYAMNN+
Sbjct: 121 LAYDVAKQWKTNKAQAIETARAWTRLYAMNNV 152
>ref|XP_003134909.1| PREDICTED: ubiquitin-conjugating enzyme E2 D4-like [Sus scrofa].
Length = 147
Score = 137 bits (344), Expect = 1e-32
Identities = 67/144 (46%), Positives = 88/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F TKIYHPN++ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +K + + AR WT+ YAM
Sbjct: 124 AHTYKADREKYNRLAREWTQKYAM 147
>ref|XP_003129335.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 2 [Sus
scrofa].
Length = 147
Score = 136 bits (343), Expect = 1e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|XP_003129334.1| PREDICTED: ubiquitin-conjugating enzyme E2 D3-like isoform 1 [Sus
scrofa].
Length = 147
Score = 136 bits (343), Expect = 1e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_001072141.1| ubiquitin-conjugating enzyme E2 D2 [Sus scrofa].
Length = 147
Score = 136 bits (343), Expect = 1e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_001072142.1| UB2D1 [Sus scrofa].
Length = 147
Score = 135 bits (339), Expect = 4e-32
Identities = 66/144 (45%), Positives = 90/144 (62%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DS ++GG F L + P +YP
Sbjct: 4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PK+ F TKIYHPN++ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A+ +K+++ + AR WT+ YAM
Sbjct: 124 AQIYKSDKEKYNRHAREWTQKYAM 147
>ref|NP_001072139.1| UBC1 [Sus scrofa].
Length = 200
Score = 134 bits (337), Expect = 7e-32
Identities = 66/127 (51%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +1
Query: 145 IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 324
IK + + N IAGP D+P+EGG ++LE+ +PE YP PKVRF+TKI+HPN+
Sbjct: 27 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 86
Query: 325 L-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 501
+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP VA Q+K N +TAR
Sbjct: 87 VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146
Query: 502 AWTRLYA 522
W +YA
Sbjct: 147 LWAHVYA 153
>ref|XP_003130657.1| PREDICTED: ubiquitin-conjugating enzyme E2 T-like [Sus scrofa].
Length = 231
Score = 134 bits (337), Expect = 7e-32
Identities = 65/146 (44%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Frame = +1
Query: 97 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 276
R+ +E L EP PGI D I G ++P+E G FKLE+ +PE YP
Sbjct: 40 RLKRELTLLATEPPPGITCWQDGDRMDDLRAQILGGANTPYEKGVFKLEVNIPERYPFEP 99
Query: 277 PKVRFMTKIYHPNVDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLA 444
P++RF+T IYHPN+D GRICLD+L K W P+L I VL S+Q L+S PNPDDPL
Sbjct: 100 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIAAVLTSVQQLMSEPNPDDPLM 159
Query: 445 NDVAEQWKTNEAQAIETARAWTRLYA 522
D++ ++K N+ + AR WT +A
Sbjct: 160 ADISSEYKYNKPVFLRNARQWTEKHA 185
>ref|XP_003135271.2| PREDICTED: ubiquitin-conjugating enzyme E2 D2-like [Sus scrofa].
Length = 147
Score = 132 bits (332), Expect = 3e-31
Identities = 64/144 (44%), Positives = 88/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIHKELLDLSRDPPDQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PK+ F T+IYHPN+++ G ICLDIL+ +WSPAL I VLLSI ++L PNPDDPL ++
Sbjct: 64 PPKIAFTTQIYHPNINRNGNICLDILRSEWSPALTISKVLLSICSMLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A+ + + + AR WT YAM
Sbjct: 124 AKIYTKDRRKYDRIAREWTEKYAM 147
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,197,965
Number of extensions: 532500
Number of successful extensions: 1526
Number of sequences better than 1.0e-05: 44
Number of HSP's gapped: 1505
Number of HSP's successfully gapped: 44
Length of query: 306
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 207
Effective length of database: 8,879,129
Effective search space: 1837979703
Effective search space used: 1837979703
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_542127.1| ubiquitin-conjugating enzyme E2 N [Mus musculus]. 310 1e-84
Alignment gi|XP_001475660.2| PREDICTED: ubiquitin-conjugating enzyme E2 N... 310 1e-84
Alignment gi|XP_001476050.2| PREDICTED: ubiquitin-conjugating enzyme E2 N... 249 2e-66
Alignment gi|XP_003085717.1| PREDICTED: ubiquitin-conjugating enzyme E2 N... 249 2e-66
Alignment gi|NP_064296.1| ubiquitin-conjugating enzyme E2 D2 [Mus musculu... 138 7e-33
Alignment gi|NP_079632.1| ubiquitin-conjugating enzyme E2 D3 [Mus musculu... 136 2e-32
Alignment gi|NP_080300.1| ubiquitin-conjugating enzyme E2 T [Mus musculus]. 135 3e-32
Alignment gi|NP_001075130.1| ubiquitin-conjugating enzyme E2D 2-like [Mus... 135 4e-32
Alignment gi|NP_663395.1| ubiquitin-conjugating enzyme E2 D1 [Mus musculu... 135 6e-32
Alignment gi|NP_058066.2| ubiquitin-conjugating enzyme E2 K [Mus musculus]. 134 1e-31
>ref|NP_542127.1| ubiquitin-conjugating enzyme E2 N [Mus musculus].
Length = 152
Score = 310 bits (794), Expect = 1e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_001475660.2| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Mus musculus].
Length = 203
Score = 310 bits (794), Expect = 1e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|XP_001476050.2| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Mus musculus].
Length = 173
Score = 249 bits (637), Expect = 2e-66
Identities = 125/144 (86%), Positives = 131/144 (90%)
Frame = +1
Query: 103 IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 282
IKETQRLLAEPVPGI AEPDE++A YF VVIAG QDSPF+GGTFKLELFLPEEYPMAAPK
Sbjct: 32 IKETQRLLAEPVPGITAEPDENSAHYFPVVIAGTQDSPFDGGTFKLELFLPEEYPMAAPK 91
Query: 283 VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 462
V FMT+IYHPNV+KL +I DILKDKWSPALQIRTVLLSIQ LLSAPNPDDPLANDVAEQ
Sbjct: 92 VCFMTEIYHPNVNKLEKI--DILKDKWSPALQIRTVLLSIQPLLSAPNPDDPLANDVAEQ 149
Query: 463 WKTNEAQAIETARAWTRLYAMNNI 534
WKTNE Q IET AWTRLYAMNNI
Sbjct: 150 WKTNEGQGIETVTAWTRLYAMNNI 173
>ref|XP_003085717.1| PREDICTED: ubiquitin-conjugating enzyme E2 N-like [Mus musculus].
Length = 173
Score = 249 bits (637), Expect = 2e-66
Identities = 125/144 (86%), Positives = 131/144 (90%)
Frame = +1
Query: 103 IKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPK 282
IKETQRLLAEPVPGI AEPDE++A YF VVIAG QDSPF+GGTFKLELFLPEEYPMAAPK
Sbjct: 32 IKETQRLLAEPVPGITAEPDENSAHYFPVVIAGTQDSPFDGGTFKLELFLPEEYPMAAPK 91
Query: 283 VRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQ 462
V FMT+IYHPNV+KL +I DILKDKWSPALQIRTVLLSIQ LLSAPNPDDPLANDVAEQ
Sbjct: 92 VCFMTEIYHPNVNKLEKI--DILKDKWSPALQIRTVLLSIQPLLSAPNPDDPLANDVAEQ 149
Query: 463 WKTNEAQAIETARAWTRLYAMNNI 534
WKTNE Q IET AWTRLYAMNNI
Sbjct: 150 WKTNEGQGIETVTAWTRLYAMNNI 173
>ref|NP_064296.1| ubiquitin-conjugating enzyme E2 D2 [Mus musculus].
Length = 147
Score = 138 bits (347), Expect = 7e-33
Identities = 68/144 (47%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + AR WT+ YAM
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYAM 147
>ref|NP_079632.1| ubiquitin-conjugating enzyme E2 D3 [Mus musculus].
Length = 147
Score = 136 bits (343), Expect = 2e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_080300.1| ubiquitin-conjugating enzyme E2 T [Mus musculus].
Length = 204
Score = 135 bits (341), Expect = 3e-32
Identities = 66/146 (45%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Frame = +1
Query: 97 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 276
R+ KE L EP PGI ++ I G ++P+E G F LE+ +PE YP
Sbjct: 6 RLKKELHMLAIEPPPGITCWQEKDQVADLRAQILGGANTPYEKGVFTLEVIIPERYPFEP 65
Query: 277 PKVRFMTKIYHPNVDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLA 444
P+VRF+T IYHPN+D GRICLDIL K W P+L I TVL SIQ L++ PNPDDPL
Sbjct: 66 PQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLM 125
Query: 445 NDVAEQWKTNEAQAIETARAWTRLYA 522
D++ ++K N+ ++ A+ WT +A
Sbjct: 126 ADISSEFKYNKIAFLKKAKQWTEAHA 151
>ref|NP_001075130.1| ubiquitin-conjugating enzyme E2D 2-like [Mus musculus].
Length = 155
Score = 135 bits (340), Expect = 4e-32
Identities = 65/144 (45%), Positives = 88/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE + +P A P N ++ I GP+DSP++GG F L + P YP
Sbjct: 12 KRIQKELVAISQDPPAHCSAGPVAENMFHWQATIMGPEDSPYQGGVFFLSVHFPNNYPFK 71
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F+T++YHPN+ K G ICLDIL WSPAL I +LLSI +LL PNPDDPL ++
Sbjct: 72 PPKVTFITRVYHPNISKNGSICLDILNSMWSPALTISKLLLSICSLLCDPNPDDPLVPEI 131
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A+ ++ + + AR WT+ YAM
Sbjct: 132 AKVYRKDLREYNRLAREWTKRYAM 155
>ref|NP_663395.1| ubiquitin-conjugating enzyme E2 D1 [Mus musculus].
Length = 147
Score = 135 bits (339), Expect = 6e-32
Identities = 66/144 (45%), Positives = 90/144 (62%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DS ++GG F L + P +YP
Sbjct: 4 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PK+ F TKIYHPN++ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL D+
Sbjct: 64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A+ +K+++ + AR WT+ YAM
Sbjct: 124 AQIYKSDKEKYNRHAREWTQKYAM 147
>ref|NP_058066.2| ubiquitin-conjugating enzyme E2 K [Mus musculus].
Length = 200
Score = 134 bits (337), Expect = 1e-31
Identities = 66/127 (51%), Positives = 87/127 (68%), Gaps = 1/127 (0%)
Frame = +1
Query: 145 IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 324
IK + + N IAGP D+P+EGG ++LE+ +PE YP PKVRF+TKI+HPN+
Sbjct: 27 IKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISS 86
Query: 325 L-GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR 501
+ G ICLDILKD+W+ A+ +RTVLLS+QALL+A PDDP VA Q+K N +TAR
Sbjct: 87 VTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146
Query: 502 AWTRLYA 522
W +YA
Sbjct: 147 LWAHVYA 153
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,745,033
Number of extensions: 712174
Number of successful extensions: 2014
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 61
Length of query: 306
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 205
Effective length of database: 12,583,923
Effective search space: 2579704215
Effective search space used: 2579704215
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003339.1| ubiquitin-conjugating enzyme E2 N [Homo sapiens]. 310 1e-84
Alignment gi|NP_001013007.1| putative ubiquitin-conjugating enzyme E2 N-l... 276 1e-74
Alignment gi|NP_054895.1| ubiquitin-conjugating enzyme E2 T [Homo sapiens]. 140 2e-33
Alignment gi|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [H... 138 8e-33
Alignment gi|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [H... 137 1e-32
Alignment gi|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapien... 137 2e-32
Alignment gi|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 136 2e-32
Alignment gi|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 136 2e-32
Alignment gi|NP_871618.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 136 2e-32
Alignment gi|NP_871616.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [H... 136 2e-32
>ref|NP_003339.1| ubiquitin-conjugating enzyme E2 N [Homo sapiens].
Length = 152
Score = 310 bits (794), Expect = 1e-84
Identities = 152/152 (100%), Positives = 152/152 (100%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 258
MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE
Sbjct: 1 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPE 60
Query: 259 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 438
EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP
Sbjct: 61 EYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDP 120
Query: 439 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
LANDVAEQWKTNEAQAIETARAWTRLYAMNNI
Sbjct: 121 LANDVAEQWKTNEAQAIETARAWTRLYAMNNI 152
>ref|NP_001013007.1| putative ubiquitin-conjugating enzyme E2 N-like [Homo sapiens].
Length = 153
Score = 276 bits (707), Expect = 1e-74
Identities = 140/153 (91%), Positives = 143/153 (93%), Gaps = 1/153 (0%)
Frame = +1
Query: 79 MAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGP-QDSPFEGGTFKLELFLP 255
MA LP RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAG +DSPFEGGTFK EL L
Sbjct: 1 MAELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLA 60
Query: 256 EEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 435
EEYPMAAPKVRFMTKIYHPNVDKL RI LDILKDKWSPALQIRTVLLSIQALL+APNPDD
Sbjct: 61 EEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDD 120
Query: 436 PLANDVAEQWKTNEAQAIETARAWTRLYAMNNI 534
PLANDV EQWKTNEAQAIETARAWTRLYAMN+I
Sbjct: 121 PLANDVVEQWKTNEAQAIETARAWTRLYAMNSI 153
>ref|NP_054895.1| ubiquitin-conjugating enzyme E2 T [Homo sapiens].
Length = 197
Score = 140 bits (352), Expect = 2e-33
Identities = 67/146 (45%), Positives = 90/146 (61%), Gaps = 4/146 (2%)
Frame = +1
Query: 97 RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 276
R+ +E L EP PGI D+ I G ++P+E G FKLE+ +PE YP
Sbjct: 6 RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 65
Query: 277 PKVRFMTKIYHPNVDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLA 444
P++RF+T IYHPN+D GRICLD+L K W P+L I TVL SIQ L+S PNPDDPL
Sbjct: 66 PQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLM 125
Query: 445 NDVAEQWKTNEAQAIETARAWTRLYA 522
D++ ++K N+ ++ AR WT +A
Sbjct: 126 ADISSEFKYNKPAFLKNARQWTEKHA 151
>ref|NP_003330.1| ubiquitin-conjugating enzyme E2 D2 isoform 1 [Homo sapiens].
Length = 147
Score = 138 bits (347), Expect = 8e-33
Identities = 68/144 (47%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + AR WT+ YAM
Sbjct: 124 ARIYKTDREKYNRIAREWTQKYAM 147
>ref|NP_871621.1| ubiquitin-conjugating enzyme E2 D3 isoform 2 [Homo sapiens].
Length = 148
Score = 137 bits (345), Expect = 1e-32
Identities = 68/144 (47%), Positives = 88/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + AR WT YAM
Sbjct: 124 ARIYKTDRDKYNRLAREWTEKYAM 147
>ref|NP_057067.1| ubiquitin-conjugating enzyme E2 D4 [Homo sapiens].
Length = 147
Score = 137 bits (344), Expect = 2e-32
Identities = 67/144 (46%), Positives = 88/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F TKIYHPN++ G ICLDIL+ +WSPAL + VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +K + + AR WT+ YAM
Sbjct: 124 AHTYKADREKYNRLAREWTQKYAM 147
>ref|NP_871620.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 136 bits (343), Expect = 2e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_871619.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 136 bits (343), Expect = 2e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_871618.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 136 bits (343), Expect = 2e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
>ref|NP_871616.1| ubiquitin-conjugating enzyme E2 D3 isoform 1 [Homo sapiens].
Length = 147
Score = 136 bits (343), Expect = 2e-32
Identities = 67/144 (46%), Positives = 89/144 (61%)
Frame = +1
Query: 94 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMA 273
+RI KE L +P A P + ++ I GP DSP++GG F L + P +YP
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 274 APKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDV 453
PKV F T+IYHPN++ G ICLDIL+ +WSPAL I VLLSI +LL PNPDDPL ++
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEI 123
Query: 454 AEQWKTNEAQAIETARAWTRLYAM 525
A +KT+ + +R WT+ YAM
Sbjct: 124 ARIYKTDRDKYNRISREWTQKYAM 147
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,785,186
Number of extensions: 842119
Number of successful extensions: 2350
Number of sequences better than 1.0e-05: 61
Number of HSP's gapped: 2318
Number of HSP's successfully gapped: 61
Length of query: 306
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 204
Effective length of database: 14,934,836
Effective search space: 3046706544
Effective search space used: 3046706544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008628
(920 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 876 0.0
Sscrofa_Chr13 821 0.0
Sscrofa_Chr05 751 0.0
Sscrofa_Chr03 686 0.0
Sscrofa_ChrX 567 e-159
Sscrofa_Chr15 426 e-117
Sscrofa_Chr02 66 4e-08
>Sscrofa_Chr01
|| Length = 315321322
Score = 876 bits (442), Expect = 0.0
Identities = 707/790 (89%), Gaps = 4/790 (0%)
Strand = Plus / Plus
Query: 73 gacaagatggccgggctgccccgcaggattatcaaggaaacccagcgtttgctggcagaa 132
|||||||||||| | ||||| |||||||| |||||||||||| | |||||| ||||
Sbjct: 29179670 gacaagatggcccgtttgcccttcaggattaagaaggaaacccagtggttgctgaaagaa 29179729
Query: 133 ccagttcccggcattaaagcagaaccagatgagagcaacgctcgttattttcatgtggtc 192
||| |||| ||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 29179730 ccaattcctggcattaaagcagaaccagatgagaccaacgcccattattttcatgtggtc 29179789
Query: 193 atagctggcccccaggattccccctttgagggagggacttttaaacttgaactattcctt 252
|| | |||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct: 29179790 attgatggcccccaggattccccttttgagggagggacttttaaacttgaactctttgtg 29179849
Query: 253 ccagaagaatacccaatggcagcccctaaagtccgtttcatgaccaaaatttatcatcct 312
|||||||| |||||||| | | ||||||| |||||| ||||||||||||||||||||
Sbjct: 29179850 ccagaagagtacccaataaaacctcctaaagcacgtttcgtgaccaaaatttatcatcct 29179909
Query: 313 aatgtagacaagttgggaagaatatgtttagatattttgaaagataagtggtccccagca 372
||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 29179910 aatatagacaagttgggaagaatatgtttagatattttgaaagaaaactggtccccagca 29179969
Query: 373 ctgcagatccgcacagttctgctatcgatccaggctttgttaagcgctcccaatccagat 432
|||||||||||||||||||||||||| ||||||||||||||| | | |||||||||||||
Sbjct: 29179970 ctgcagatccgcacagttctgctatccatccaggctttgttaggtgatcccaatccagat 29180029
Query: 433 gatccattagcaaatgatgtagcggagcagtggaagaccaacgaagcccaagccatagaa 492
|||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 29180030 gatccactagcatatgatgtagcgaagcagtggaagaccaacaaagcccaagccatagaa 29180089
Query: 493 acagctagagcatggactaggctatatgccatgaataatatttaaatcgat-tgatcatc 551
|||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||
Sbjct: 29180090 acagctagagcatggactagactatatgccatgaataatgtttaaatccctctgatcatc 29180149
Query: 552 aagtgtgcatcacttctcctgttctgccaagacttcttccttttttgtttgcatttaatg 611
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 29180150 cagtgtgcatcacttctcctgttcagccaagacttcttcactttttgtttgcatttaatg 29180209
Query: 612 gacacagtcttagaaacattacagaataaaagcccagacatcttcagtcctttggtgatt 671
|||||||||| |||| |||| || ||||||||||||| | ||||| ||||||||||||
Sbjct: 29180210 gacacagtctaagaagaattataggataaaagcccagatagcttcatccctttggtgatt 29180269
Query: 672 aaatgcacattagcaaatctatgtcttgtcctgattcactgttgtaaagcatgagcagag 731
||||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||
Sbjct: 29180270 aaatgcacattagcaaatctaggtcttaacctggttcgctgttgtaaagcatgagcagag 29180329
Query: 732 gctagaagtaccatccggattgttgtgaaacgtttaaaagcagtgg-ccctctctgcttt 790
|||| ||||| ||| | |||||||||| || ||||||||||||||| |||||||||| |
Sbjct: 29180330 gctaaaagtatcat-cagattgttgtgcaatgtttaaaagcagtggcccctctctgcatg 29180388
Query: 791 tattc-tttcccccatcatggtttaagtataaagcactgtgaatgaaggtagtcgtcagg 849
||||| |||| |||||||||||||||| ||||||||||||||| || ||||| || |||
Sbjct: 29180389 tattcatttctcccatcatggtttaagcataaagcactgtgaaacaaagtagttgttagg 29180448
Query: 850 gttagctgca 859
||||||||||
Sbjct: 29180449 gttagctgca 29180458
>Sscrofa_Chr13
|| Length = 218635234
Score = 821 bits (414), Expect = 0.0
Identities = 660/739 (89%), Gaps = 16/739 (2%)
Strand = Plus / Minus
Query: 134 cagttcccggcattaaagcagaaccagatgagagcaacgctcgttattttcatgtggtca 193
||||||| | |||||||| | ||||||||||||||||||| | ||| |||||| ||||||
Sbjct: 43194648 cagttcctgacattaaagaataaccagatgagagcaacgccctttactttcatttggtca 43194589
Query: 194 tagctggcccccaggattccccctttgagggagggacttttaaacttgaactattccttc 253
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43194588 tagctgccctccaggactccccctttgagggagggacttttaaacttgaactattccttc 43194529
Query: 254 cagaagaatacccaatggcagcccctaaagtccgtttcatgaccaaaatttatcatccta 313
|||||||||| ||| ||||||||||| |||| | |||||||||||||||||||||||||
Sbjct: 43194528 cagaagaatatccagtggcagcccctgaagtacatttcatgaccaaaatttatcatcctg 43194469
Query: 314 atgtagacaagttgggaagaatatgtttagatattttgaaagataagtggtccccagcac 373
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 43194468 atgtagacaagttggaaagaatatgtttagatattttggaagataagtggtccccagcaa 43194409
Query: 374 tgcagatccgcacagttctgctatcgatccaggctttgttaagcgctcccaatccagatg 433
|||||||| ||||||||||||||| | | || ||||||||| ||||||||||||||||
Sbjct: 43194408 tgcagatcttcacagttctgctatcaacctagactttgttaaatgctcccaatccagatg 43194349
Query: 434 atccattagcaaatgatgtagcggagcagtggaagaccaacgaagcccaagccatagaaa 493
|||||||||||||||| ||||| ||||| |||| |||| |||||||||||| |||||
Sbjct: 43194348 atccattagcaaatgaggtagcacagcagcagaaggccaagaaagcccaagccaaagaaa 43194289
Query: 494 cagctagagcatggactaggctatatgccatgaataatatttaaatcgattgatca-tca 552
|||||||||| | |||||| ||| |||| || |||||||||||| ||||||||||| |||
Sbjct: 43194288 cagctagagcgtagactagactacatgcaataaataatatttaactcgattgatcattca 43194229
Query: 553 agtgtgcatcacttctcctgttctgccaagacttcttccttttttgtttgcatttaatgg 612
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43194228 agtgttcattacttctcctgttctgccaagacttcttccttttttgtttgcatttaatgg 43194169
Query: 613 acacagtcttagaaacattacagaataaaagcccagacatcttcagtcctttggtgatta 672
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 43194168 --acagtcttagaaacattacagaataaaagcccagacagcttcagtcctttggtgatta 43194111
Query: 673 aatgcacattagcaaatctatgtcttgtcctgattcactgttgtaaagcatgagcagagg 732
|||||||||||||||||| ||||||||||| || |||| ||||||||| |
Sbjct: 43194110 aatgcacattagcaaatccatgtcttgtcc-----------tgcaaagtatgagcagaag 43194062
Query: 733 ctagaagtaccatccggattgttgtgaaacgtttaaaagcagtgg-ccctctctgctttt 791
||||||||| |||| |||||||| | ||| ||||||||||||||| ||||||||||||||
Sbjct: 43194061 ctagaagtagcatctggattgttattaaatgtttaaaagcagtggtccctctctgctttt 43194002
Query: 792 att-ctttcccccatcatggtttaagtataaagcactgtgaatgaaggtagtcgtcaggg 850
||| ||||| || ||||||||||||||||||||||| ||||| ||||| ||| ||||| |
Sbjct: 43194001 attactttctcctatcatggtttaagtataaagcaccgtgaaggaaggcagttgtcagtg 43193942
Query: 851 ttagctgcaggggtgtggg 869
|||||||||||||||||||
Sbjct: 43193941 ttagctgcaggggtgtggg 43193923
Score = 163 bits (82), Expect = 2e-37
Identities = 115/126 (91%)
Strand = Plus / Minus
Query: 48 agaccagaggccgtactcgggatttgacaagatggccgggctgccccgcaggattatcaa 107
||||||||||| ||||| |||||||||||||||| ||||| ||||| |||||||||||||
Sbjct: 43194780 agaccagaggctgtacttgggatttgacaagatgaccgggttgccctgcaggattatcaa 43194721
Query: 108 ggaaacccagcgtttgctggcagaaccagttcccggcattaaagcagaaccagatgagag 167
| ||||| ||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 43194720 gaaaacctagcatttgctggcagacccagttcccggcattaaagaagaaccagatgagag 43194661
Query: 168 caacgc 173
| ||||
Sbjct: 43194660 ccacgc 43194655
>Sscrofa_Chr05
|| Length = 111506441
Score = 751 bits (379), Expect = 0.0
Identities = 379/379 (100%)
Strand = Plus / Plus
Query: 493 acagctagagcatggactaggctatatgccatgaataatatttaaatcgattgatcatca 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93636720 acagctagagcatggactaggctatatgccatgaataatatttaaatcgattgatcatca 93636779
Query: 553 agtgtgcatcacttctcctgttctgccaagacttcttccttttttgtttgcatttaatgg 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93636780 agtgtgcatcacttctcctgttctgccaagacttcttccttttttgtttgcatttaatgg 93636839
Query: 613 acacagtcttagaaacattacagaataaaagcccagacatcttcagtcctttggtgatta 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93636840 acacagtcttagaaacattacagaataaaagcccagacatcttcagtcctttggtgatta 93636899
Query: 673 aatgcacattagcaaatctatgtcttgtcctgattcactgttgtaaagcatgagcagagg 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93636900 aatgcacattagcaaatctatgtcttgtcctgattcactgttgtaaagcatgagcagagg 93636959
Query: 733 ctagaagtaccatccggattgttgtgaaacgtttaaaagcagtggccctctctgctttta 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93636960 ctagaagtaccatccggattgttgtgaaacgtttaaaagcagtggccctctctgctttta 93637019
Query: 793 ttctttcccccatcatggtttaagtataaagcactgtgaatgaaggtagtcgtcagggtt 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93637020 ttctttcccccatcatggtttaagtataaagcactgtgaatgaaggtagtcgtcagggtt 93637079
Query: 853 agctgcaggggtgtgggtg 871
|||||||||||||||||||
Sbjct: 93637080 agctgcaggggtgtgggtg 93637098
Score = 492 bits (248), Expect = e-136
Identities = 254/256 (99%)
Strand = Plus / Plus
Query: 107 aggaaacccagcgtttgctggcagaaccagttcccggcattaaagcagaaccagatgaga 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93635474 aggaaacccagcgtttgctggcagaaccagttcccggcattaaagcagaaccagatgaga 93635533
Query: 167 gcaacgctcgttattttcatgtggtcatagctggcccccaggattccccctttgagggag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93635534 gcaacgctcgttattttcatgtggtcatagctggcccccaggattccccctttgagggag 93635593
Query: 227 ggacttttaaacttgaactattccttccagaagaatacccaatggcagcccctaaagtcc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93635594 ggacttttaaacttgaactattccttccagaagaatacccaatggcagcccctaaagtcc 93635653
Query: 287 gtttcatgaccaaaatttatcatcctaatgtagacaagttgggaagaatatgtttagata 346
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 93635654 gtttcatgaccaaaatttatcatcctaatgtagacaaattgggaagaatatgtttagata 93635713
Query: 347 ttttgaaagataagtg 362
||||||||| ||||||
Sbjct: 93635714 ttttgaaaggtaagtg 93635729
Score = 283 bits (143), Expect = 8e-74
Identities = 143/143 (100%)
Strand = Plus / Plus
Query: 354 agataagtggtccccagcactgcagatccgcacagttctgctatcgatccaggctttgtt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93635883 agataagtggtccccagcactgcagatccgcacagttctgctatcgatccaggctttgtt 93635942
Query: 414 aagcgctcccaatccagatgatccattagcaaatgatgtagcggagcagtggaagaccaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93635943 aagcgctcccaatccagatgatccattagcaaatgatgtagcggagcagtggaagaccaa 93636002
Query: 474 cgaagcccaagccatagaaacag 496
|||||||||||||||||||||||
Sbjct: 93636003 cgaagcccaagccatagaaacag 93636025
Score = 218 bits (110), Expect = 4e-54
Identities = 113/114 (99%)
Strand = Plus / Plus
Query: 1 gagcccgggacttccactcgtgcgtgaggcgagcggagccggagacaagaccagaggccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93613289 gagcccgggacttccactcgtgcgtgaggcgagcggagccggagacaagaccagaggccg 93613348
Query: 61 tactcgggatttgacaagatggccgggctgccccgcaggattatcaaggaaacc 114
||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 93613349 tactcgggatttgacaagatggccgggctgccccgcaggattatcaaggtaacc 93613402
>Sscrofa_Chr03
|| Length = 144787322
Score = 686 bits (346), Expect = 0.0
Identities = 497/546 (91%), Gaps = 16/546 (2%)
Strand = Plus / Plus
Query: 155 aaccagatgagagcaacgctcgttattttcatgtggtcatagctggcccccaggattcc- 213
|||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 44753176 aaccagatgagagcaatgctcattattttcatgtggtcataactggcccccagggttcca 44753235
Query: 214 -------ccctttgagggagggacttttaaacttgaactattccttccagaagaataccc 266
||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 44753236 ggtgtggccctttgagggagggacttctaaacttaaactattccttccagaagaataccc 44753295
Query: 267 aatggcagcccctaaagtccgtttcatgaccaaaatttatcatcctaatgtagacaagtt 326
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 44753296 aatggcaacccctaaagtctgtttcatgaccaaaatttatcatcctaatgtagacaagct 44753355
Query: 327 gggaagaatatgtttagatattttgaaagataagtggtccccagcactgcagatccgcac 386
||||||||||| |||||||||||||||||||| || ||||||||||||||| ||| ||||
Sbjct: 44753356 gggaagaatatatttagatattttgaaagatatgtagtccccagcactgcatatctgcac 44753415
Query: 387 agttctgctatcgatccaggctttgttaagcgctcccaatccagatgatccattagcaaa 446
|||| ||||||| ||| |||||||| |||| ||||||||||||||||||| |||||||||
Sbjct: 44753416 agttttgctatccatctaggctttg-taagtgctcccaatccagatgatctattagcaaa 44753474
Query: 447 tgatgtagcggagcagtggaagaccaacgaagcccaagccatagaaacagctagagcatg 506
| ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| ||
Sbjct: 44753475 ttatgtagcagagcagtggaagaccaacaaagtccaaatcatagaaacagctagagattg 44753534
Query: 507 gactaggctatatgccatgaataatatttaaatcgattgatcatcaagtgtgcatcactt 566
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 44753535 gactgggctatatgccatgaataatatttaaatc----aatcatcaagtgtgcatcactt 44753590
Query: 567 ctcctgttctgccaagacttcttccttttttgtttgcatttaatggacacagtcttagaa 626
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44753591 ---ctgttctgccaaggtgtcttccttttttgtttgcatttaatggacacagtcttagaa 44753647
Query: 627 acattacagaataaaagcccagacatcttcagtcctttggtgattaaatgcacattagca 686
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 44753648 acattacagaataaaagcccagatatcttcagtcctttggtgattaaatgcacattagca 44753707
Query: 687 aatcta 692
||||||
Sbjct: 44753708 aatcta 44753713
Score = 686 bits (346), Expect = 0.0
Identities = 497/546 (91%), Gaps = 16/546 (2%)
Strand = Plus / Plus
Query: 155 aaccagatgagagcaacgctcgttattttcatgtggtcatagctggcccccaggattcc- 213
|||||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||
Sbjct: 44832541 aaccagatgagagcaatgctcattattttcatgtggtcataactggcccccagggttcca 44832600
Query: 214 -------ccctttgagggagggacttttaaacttgaactattccttccagaagaataccc 266
||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 44832601 ggtgtggccctttgagggagggacttctaaacttaaactattccttccagaagaataccc 44832660
Query: 267 aatggcagcccctaaagtccgtttcatgaccaaaatttatcatcctaatgtagacaagtt 326
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 44832661 aatggcaacccctaaagtctgtttcatgaccaaaatttatcatcctaatgtagacaagct 44832720
Query: 327 gggaagaatatgtttagatattttgaaagataagtggtccccagcactgcagatccgcac 386
||||||||||| |||||||||||||||||||| || ||||||||||||||| ||| ||||
Sbjct: 44832721 gggaagaatatatttagatattttgaaagatatgtagtccccagcactgcatatctgcac 44832780
Query: 387 agttctgctatcgatccaggctttgttaagcgctcccaatccagatgatccattagcaaa 446
|||| ||||||| ||| |||||||| |||| ||||||||||||||||||| |||||||||
Sbjct: 44832781 agttttgctatccatctaggctttg-taagtgctcccaatccagatgatctattagcaaa 44832839
Query: 447 tgatgtagcggagcagtggaagaccaacgaagcccaagccatagaaacagctagagcatg 506
| ||||||| |||||||||||||||||| ||| |||| ||||||||||||||||| ||
Sbjct: 44832840 ttatgtagcagagcagtggaagaccaacaaagtccaaatcatagaaacagctagagattg 44832899
Query: 507 gactaggctatatgccatgaataatatttaaatcgattgatcatcaagtgtgcatcactt 566
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 44832900 gactgggctatatgccatgaataatatttaaatc----aatcatcaagtgtgcatcactt 44832955
Query: 567 ctcctgttctgccaagacttcttccttttttgtttgcatttaatggacacagtcttagaa 626
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 44832956 ---ctgttctgccaaggtgtcttccttttttgtttgcatttaatggacacagtcttagaa 44833012
Query: 627 acattacagaataaaagcccagacatcttcagtcctttggtgattaaatgcacattagca 686
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 44833013 acattacagaataaaagcccagatatcttcagtcctttggtgattaaatgcacattagca 44833072
Query: 687 aatcta 692
||||||
Sbjct: 44833073 aatcta 44833078
Score = 135 bits (68), Expect = 5e-29
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 25 tgaggcgagcggagccggagacaagaccagaggccgtactcgggatttgacaagatggcc 84
|||||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 44753070 tgaggccagcagagccagagacaagaccagaggctgtacttgtgatttgacaagatggct 44753129
Query: 85 gggctgccccgcaggattatcaaggaaacccagcgtttgctggcagaaccag 136
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 44753130 gggctgccccacaggattatcaaggaaacccaatgtttgctggcaaaaccag 44753181
Score = 135 bits (68), Expect = 5e-29
Identities = 101/112 (90%)
Strand = Plus / Plus
Query: 25 tgaggcgagcggagccggagacaagaccagaggccgtactcgggatttgacaagatggcc 84
|||||| ||| ||||| ||||||||||||||||| ||||| | ||||||||||||||||
Sbjct: 44832435 tgaggccagcagagccagagacaagaccagaggctgtacttgtgatttgacaagatggct 44832494
Query: 85 gggctgccccgcaggattatcaaggaaacccagcgtttgctggcagaaccag 136
|||||||||| ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 44832495 gggctgccccacaggattatcaaggaaacccaatgtttgctggcaaaaccag 44832546
>Sscrofa_ChrX
|| Length = 144288218
Score = 567 bits (286), Expect = e-159
Identities = 379/410 (92%), Gaps = 5/410 (1%)
Strand = Plus / Minus
Query: 16 actcgtgcgtgaggcgagcggagccggagacaagaccagaggccgtactcgggatttgac 75
||||||| ||||||||||| ||||| |||||||||||||||||||| || ||||| ||||
Sbjct: 126684501 actcgtgtgtgaggcgagcagagccagagacaagaccagaggccgtccttgggatgtgac 126684442
Query: 76 aagatggccgggctgccccgcaggattatcaaggaaacccagcgtttgctggcagaacca 135
| ||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 126684441 aggatggccaggctaccctgcaggattatcaaggaaacccagcgtttgctggcagaacca 126684382
Query: 136 gttcccggcattaaagcagaaccagatgagagcaacgctcgttattttcatgtggtcata 195
||||| |||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 126684381 gttcctggcattaaggcagaaccagatgagagcaacgctcgtcattttcctgtggtcata 126684322
Query: 196 gctggcccccaggattccccctttgagggagggacttttaaacttgaactattccttcca 255
|||||||||||||| |||| ||||||||||||||||||||||||| |||||||| |||||
Sbjct: 126684321 gctggcccccaggactccctctttgagggagggacttttaaacttcaactattctttcca 126684262
Query: 256 gaagaatacccaatggcagcccctaaagtccgtttcatgaccaaaatttatcatcctaat 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126684261 gaagaatacccaatggcagcccctaaagtccgtttcatgaccaaaatttatcatcctaat 126684202
Query: 316 gtagacaagttgggaagaatatgtttagatattttgaaagataagtggtccccagcactg 375
|||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 126684201 gtagacaaattgggaagaatatgtttagatattttga-----aagtggttcccagcactg 126684147
Query: 376 cagatccgcacagttctgctatcgatccaggctttgttaagcgctcccaa 425
||||||||||||| |||||||| |||||||| || || ||| ||||||||
Sbjct: 126684146 cagatccgcacagctctgctattgatccaggtttggtgaagtgctcccaa 126684097
Score = 355 bits (179), Expect = 3e-95
Identities = 238/257 (92%), Gaps = 3/257 (1%)
Strand = Plus / Minus
Query: 540 cgattgatcatcaagtgtgcatcacttctcctgttctgccaagacttcttccttttttgt 599
|||| ||||||||||| |||||||||||| || |||||||||||||| ||||||||||
Sbjct: 126683780 cgatcgatcatcaagtatgcatcacttctgct---ctgccaagacttctcccttttttgt 126683724
Query: 600 ttgcatttaatggacacagtcttagaaacattacagaataaaagcccagacatcttcagt 659
|||||||||||||||||||||||||||||||||| |||||||||| || | |||||| ||
Sbjct: 126683723 ttgcatttaatggacacagtcttagaaacattacggaataaaagctcaaatatcttccgt 126683664
Query: 660 cctttggtgattaaatgcacattagcaaatctatgtcttgtcctgattcactgttgtaaa 719
| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 126683663 cttttgatgattaaatgcacattagcaaatctatgtcttgtcctgatttactgttgtaaa 126683604
Query: 720 gcatgagcagaggctagaagtaccatccggattgttgtgaaacgtttaaaagcagtggcc 779
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 126683603 gcatgagcagaggctagaagtaccatcgggatgactgtgaaacgtttaaaagcagtggcc 126683544
Query: 780 ctctctgcttttattct 796
|||||||||||||||||
Sbjct: 126683543 ctctctgcttttattct 126683527
Score = 103 bits (52), Expect = 2e-19
Identities = 64/68 (94%)
Strand = Plus / Minus
Query: 460 cagtggaagaccaacgaagcccaagccatagaaacagctagagcatggactaggctatat 519
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 126684091 cagtggaagaccaatgaagcctgagccatagaaacagctggagcatggactaggctatat 126684032
Query: 520 gccatgaa 527
||||||||
Sbjct: 126684031 gccatgaa 126684024
>Sscrofa_Chr15
|| Length = 157681621
Score = 426 bits (215), Expect = e-117
Identities = 555/663 (83%), Gaps = 39/663 (5%)
Strand = Plus / Minus
Query: 224 gagggacttttaaacttgaactattccttccagaagaatacccaatggcagcccctaaag 283
||||||||||||||||||||||||| ||||| | |||||||||| |||||||| |||||
Sbjct: 35102464 gagggacttttaaacttgaactattgcttcctggagaatacccagtggcagccactaaaa 35102405
Query: 284 tccgtttcatgaccaaaatttatcatcctaatgtagacaagttgggaagaatatgtttag 343
| | ||||||||||||||||||||||||||||||||||||| ||| ||||| ||| | ||
Sbjct: 35102404 tacatttcatgaccaaaatttatcatcctaatgtagacaagctggaaagaagatgctgag 35102345
Query: 344 atattttgaaagataagtggtccccagcactgcagatccgcacagttctgctatcgatcc 403
||| |||||||| ||||||||||| | |||||||| ||||||||||||| | |||||
Sbjct: 35102344 atactttgaaaggtaagtggtcccta-tgctgcagatttgcacagttctgctgtggatcc 35102286
Query: 404 aggctttgttaagcgctcccaatccagatgatccattagcaaatgatgtagcggagcagt 463
||||||||||||| |||| ||||| |||||||| |||||||||||||||||| ||| |||
Sbjct: 35102285 aggctttgttaagtgctctcaatctagatgatcaattagcaaatgatgtagcagagaagt 35102226
Query: 464 ggaagaccaacgaagcccaagc-------catagaaac---agctagagcatggactagg 513
|||||||||| ||||||||||| | | ||| | |||||||| ||||||| |
Sbjct: 35102225 ggaagaccaaggaagcccaagctgtaggacttggaatcccaagctagagtgtggactaag 35102166
Query: 514 ctatatgccatgaataatatttaaatcgat-tgatcatcaagtgtgcatcacttctcctg 572
||||||||||||||||| |||||| ||| |||||||| ||||| ||||||||||||
Sbjct: 35102165 ctatatgccatgaataacgtttaaagtgatccgatcatca--tgtgcttcacttctcctg 35102108
Query: 573 ttctgccaagacttcttcc-ttttttgtttgcatttaatgg-acacagtcttagaaacat 630
|||||||||| | | | || ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 35102107 ttctgccaaggcctttgccattttttgtttgcatttaatggtacacagtcttagaaacat 35102048
Query: 631 tacagaataaaagcccagacatcttcagtcctttggtgattaaatgcacattagcaaatc 690
|| ||| ||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 35102047 tatagagtaaaagc-----------cagtcctttggtgattaaatgcacatcagcaaatc 35101999
Query: 691 tatgtcttgtcctgattcactgttgtaaagcatgagcagaggctagaagtaccatccgga 750
| ||||| ||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 35101998 tgtgtctcatcctgattcactgttgtaaagcatgagcagagg----------catctgga 35101949
Query: 751 ttgttgtgaaacgtttaaaagcagtg-gccctctctgcttttatt-ctttcccccatcat 808
|||||| ||||||||| || ||| | |||||| || ||||||| |||| |||||||||
Sbjct: 35101948 ttgttgcaaaacgtttagaaacagggacccctctttgtttttattccttttccccatcat 35101889
Query: 809 ggtttaagtataaagcactgtgaatgaaggtagtcgtcagggttagctgcaggggtgtgg 868
| || |||| |||||||||||||||||||| ||| || || ||||||||||||||||||
Sbjct: 35101888 gtttcaagtgtaaagcactgtgaatgaagggagttgttagaattagctgcaggggtgtgg 35101829
Query: 869 gtg 871
|||
Sbjct: 35101828 gtg 35101826
Score = 58.0 bits (29), Expect = 9e-06
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 177 ttattttcatgtggtcatagctggcccccagga 209
|||||||||||||||||| ||||||||||||||
Sbjct: 35103054 ttattttcatgtggtcattgctggcccccagga 35103022
>Sscrofa_Chr02
|| Length = 162569375
Score = 65.9 bits (33), Expect = 4e-08
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Minus
Query: 782 ctctgcttttattctttccc-ccatcatggtttaagtataaagcactgtgaatgaaggta 840
|||||||||||||| ||||| ||| |||||||||||||||||||| | |||||||| | |
Sbjct: 148228570 ctctgcttttattcattccctccaccatggtttaagtataaagcagtatgaatgaacgga 148228511
Query: 841 gtcgtcagggttagctg 857
|| |||| ||||||||
Sbjct: 148228510 gttgtcaaagttagctg 148228494
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 28,106,292
Number of extensions: 238
Number of successful extensions: 238
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 219
Number of HSP's successfully gapped: 24
Length of query: 920
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 899
Effective length of database: 2,808,413,156
Effective search space: 2524763427244
Effective search space used: 2524763427244
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)