Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073765.1| citrate lyase subunit beta-like protein, mit... 208 7e-54
>ref|NP_001073765.1| citrate lyase subunit beta-like protein, mitochondrial [Bos
taurus].
Length = 167
Score = 208 bits (529), Expect = 7e-54
Identities = 102/107 (95%), Positives = 105/107 (98%)
Frame = +2
Query: 149 HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDL 328
HKYIPRRAVLYVPGNDEKKI KIPSLNVDCAVLDCEDGVAVNKK+EARLRIVKTLEDFDL
Sbjct: 41 HKYIPRRAVLYVPGNDEKKINKIPSLNVDCAVLDCEDGVAVNKKDEARLRIVKTLEDFDL 100
Query: 329 GPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRW 469
GPTEKCVRINSVSSGLAEEDLE +LQSRVLPSSLMLPKVEGPEEI+W
Sbjct: 101 GPTEKCVRINSVSSGLAEEDLEAILQSRVLPSSLMLPKVEGPEEIQW 147
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,249,634
Number of extensions: 820297
Number of successful extensions: 2580
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2575
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,273,310
Effective search space: 3297134610
Effective search space used: 3297134610
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534174.2| PREDICTED: similar to citrate lyase beta like [... 487 e-141
>ref|XP_534174.2| PREDICTED: similar to citrate lyase beta like [Canis familiaris].
Length = 337
Score = 487 bits (1253), Expect(2) = e-141
Identities = 244/266 (91%), Positives = 255/266 (95%)
Frame = +2
Query: 149 HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDL 328
H+Y+PRRAVLYVPGNDEKKIKKIP LNVDCAVLDCEDGVA+NKKN+ARLRIV+TLEDFDL
Sbjct: 37 HRYVPRRAVLYVPGNDEKKIKKIPFLNVDCAVLDCEDGVAMNKKNDARLRIVETLEDFDL 96
Query: 329 GPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRK 508
GPTE CVR+NSVSSGLAEEDLE LLQSRVLPSSLMLPKVEGPEEI+WFSDKFS YLKGRK
Sbjct: 97 GPTETCVRVNSVSSGLAEEDLETLLQSRVLPSSLMLPKVEGPEEIQWFSDKFSFYLKGRK 156
Query: 509 LEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVVFGGEDFRASIGATSRKET 688
LEQPMNLIPFVETAMGLLNFKAVCEEALK+GPQVGL LDAVVFGGEDFRASIGATS KET
Sbjct: 157 LEQPMNLIPFVETAMGLLNFKAVCEEALKSGPQVGLFLDAVVFGGEDFRASIGATSSKET 216
Query: 689 QDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAV 868
QDILYARQKIIV+AKAFGLQAIDLVYIDFRDGEGLL+Q+REGAAMGFTGKQVIHPNQIAV
Sbjct: 217 QDILYARQKIIVIAKAFGLQAIDLVYIDFRDGEGLLRQSREGAAMGFTGKQVIHPNQIAV 276
Query: 869 VQEQFSPSPEKINGLEELIAAF*EHQ 946
VQEQFSPSPEKI EELI AF EHQ
Sbjct: 277 VQEQFSPSPEKIKWAEELITAFKEHQ 302
Score = 35.4 bits (80), Expect(2) = e-141
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 954 KGAFTFGGSMIDMPLLK 1004
KGAFTF GSMIDMPLLK
Sbjct: 306 KGAFTFRGSMIDMPLLK 322
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 35,805,687
Number of extensions: 847248
Number of successful extensions: 2532
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2530
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 231
Effective length of database: 15,440,896
Effective search space: 3566846976
Effective search space used: 3566846976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927259.3| PREDICTED: citrate lyase subunit beta-like p... 514 e-151
>ref|XP_001927259.3| PREDICTED: citrate lyase subunit beta-like protein, mitochondrial
[Sus scrofa].
Length = 322
Score = 514 bits (1324), Expect(2) = e-151
Identities = 264/279 (94%), Positives = 265/279 (94%)
Frame = +2
Query: 110 TDVXXXXXXXXXXHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEA 289
TDV HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEA
Sbjct: 9 TDVSSLRHSSSPSHKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEA 68
Query: 290 RLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRW 469
RLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRW
Sbjct: 69 RLRIVKTLEDFDLGPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRW 128
Query: 470 FSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVVFGGED 649
FSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAV+FGGED
Sbjct: 129 FSDKFSLYLKGRKLEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVIFGGED 188
Query: 650 FRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGF 829
FRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGF
Sbjct: 189 FRASIGATSRKETQDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGF 248
Query: 830 TGKQVIHPNQIAVVQEQFSPSPEKINGLEELIAAF*EHQ 946
TGKQVIHPNQIAVVQEQFSPSPEKI EELIAAF EHQ
Sbjct: 249 TGKQVIHPNQIAVVQEQFSPSPEKIKWAEELIAAFKEHQ 287
Score = 38.5 bits (88), Expect(2) = e-151
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = +3
Query: 954 KGAFTFGGSMIDMPLLK 1004
KGAFTFGGSMIDMPLLK
Sbjct: 291 KGAFTFGGSMIDMPLLK 307
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,031,613
Number of extensions: 524161
Number of successful extensions: 1512
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1510
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,879,129
Effective search space: 2086595315
Effective search space used: 2086595315
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083832.2| citrate lyase subunit beta-like protein, mitoch... 471 e-137
>ref|NP_083832.2| citrate lyase subunit beta-like protein, mitochondrial precursor
[Mus musculus].
Length = 338
Score = 471 bits (1211), Expect(2) = e-137
Identities = 236/266 (88%), Positives = 248/266 (93%)
Frame = +2
Query: 149 HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDL 328
HKY+PRRAVLYVPGNDEKKI+KIPSL VDCAVLDCEDGVA NKKNEARLRI KTLEDFDL
Sbjct: 38 HKYVPRRAVLYVPGNDEKKIRKIPSLKVDCAVLDCEDGVAENKKNEARLRIAKTLEDFDL 97
Query: 329 GPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRK 508
G TEKCVRINSVSSGLAE DLE LQ+RVLPSSLMLPKVEGPEEIRWFSDKFSL+LKGRK
Sbjct: 98 GTTEKCVRINSVSSGLAEVDLETFLQARVLPSSLMLPKVEGPEEIRWFSDKFSLHLKGRK 157
Query: 509 LEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVVFGGEDFRASIGATSRKET 688
LEQPMNLIPFVETAMGLLNFKAVCEE LK GPQVGL LDAVVFGGEDFRASIGATS K+T
Sbjct: 158 LEQPMNLIPFVETAMGLLNFKAVCEETLKTGPQVGLCLDAVVFGGEDFRASIGATSNKDT 217
Query: 689 QDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAV 868
QDILYARQK++V AKAFGLQAIDLVYIDFRD +GLL+Q+RE AAMGFTGKQVIHPNQIAV
Sbjct: 218 QDILYARQKVVVTAKAFGLQAIDLVYIDFRDEDGLLRQSREAAAMGFTGKQVIHPNQIAV 277
Query: 869 VQEQFSPSPEKINGLEELIAAF*EHQ 946
VQEQF+P+PEKI EELIAAF EHQ
Sbjct: 278 VQEQFTPTPEKIQWAEELIAAFKEHQ 303
Score = 35.4 bits (80), Expect(2) = e-137
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 954 KGAFTFGGSMIDMPLLK 1004
KGAFTF GSMIDMPLLK
Sbjct: 307 KGAFTFRGSMIDMPLLK 323
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,737,081
Number of extensions: 708465
Number of successful extensions: 2084
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2076
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 232
Effective length of database: 12,553,887
Effective search space: 2912501784
Effective search space used: 2912501784
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_996531.1| citrate lyase subunit beta-like protein, mitoch... 481 e-139
>ref|NP_996531.1| citrate lyase subunit beta-like protein, mitochondrial precursor
[Homo sapiens].
Length = 340
Score = 481 bits (1237), Expect(2) = e-139
Identities = 243/266 (91%), Positives = 251/266 (94%)
Frame = +2
Query: 149 HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAVNKKNEARLRIVKTLEDFDL 328
HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVA NKKNEARLRIVKTLED DL
Sbjct: 40 HKYIPRRAVLYVPGNDEKKIKKIPSLNVDCAVLDCEDGVAANKKNEARLRIVKTLEDIDL 99
Query: 329 GPTEKCVRINSVSSGLAEEDLEVLLQSRVLPSSLMLPKVEGPEEIRWFSDKFSLYLKGRK 508
GPTEKCVR+NSVSSGLAEEDLE LLQSRVLPSSLMLPKVE PEEI+WF+DKFS +LKGRK
Sbjct: 100 GPTEKCVRVNSVSSGLAEEDLETLLQSRVLPSSLMLPKVESPEEIQWFADKFSFHLKGRK 159
Query: 509 LEQPMNLIPFVETAMGLLNFKAVCEEALKNGPQVGLSLDAVVFGGEDFRASIGATSRKET 688
LEQPMNLIPFVETAMGLLNFKAVCEE LK GPQVGL LDAVVFGGEDFRASIGATS KET
Sbjct: 160 LEQPMNLIPFVETAMGLLNFKAVCEETLKVGPQVGLFLDAVVFGGEDFRASIGATSSKET 219
Query: 689 QDILYARQKIIVVAKAFGLQAIDLVYIDFRDGEGLLKQAREGAAMGFTGKQVIHPNQIAV 868
DILYARQKI+V+AKAFGLQAIDLVYIDFRDG GLL+Q+REGAAMGFTGKQVIHPNQIAV
Sbjct: 220 LDILYARQKIVVIAKAFGLQAIDLVYIDFRDGAGLLRQSREGAAMGFTGKQVIHPNQIAV 279
Query: 869 VQEQFSPSPEKINGLEELIAAF*EHQ 946
VQEQFSPSPEKI EELIAAF EHQ
Sbjct: 280 VQEQFSPSPEKIKWAEELIAAFKEHQ 305
Score = 35.4 bits (80), Expect(2) = e-139
Identities = 16/17 (94%), Positives = 16/17 (94%)
Frame = +3
Query: 954 KGAFTFGGSMIDMPLLK 1004
KGAFTF GSMIDMPLLK
Sbjct: 309 KGAFTFQGSMIDMPLLK 325
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,071,110
Number of extensions: 837811
Number of successful extensions: 2425
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2418
Number of HSP's successfully gapped: 2
Length of query: 334
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 231
Effective length of database: 14,901,872
Effective search space: 3442332432
Effective search space used: 3442332432
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008629
(1004 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr11 371 e-100
>Sscrofa_Chr11
|| Length = 87690581
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 94 gagagcatctctggcaactgatgtgtccagtctcaggcacagttcctcacccagtcacaa 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75927385 gagagcatctctggcaactgatgtgtccagtctcaggcacagttcctcacccagtcacaa 75927444
Query: 154 gtacattccccggagggcagtgctctatgtacctggaaatgatgagaagaaaataaagaa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75927445 gtacattccccggagggcagtgctctatgtacctggaaatgatgagaagaaaataaagaa 75927504
Query: 214 gattccctccctgaatgtagattgtgcggtgctcgactgtgaggatggtgtggctgtgaa 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75927505 gattccctccctgaatgtagattgtgcggtgctcgactgtgaggatggtgtggctgtgaa 75927564
Query: 274 caaaaag 280
|||||||
Sbjct: 75927565 caaaaag 75927571
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Plus
Query: 279 agaatgaagctcgattgagaatagtgaaaactcttgaagactttgatctgggcccaactg 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75995894 agaatgaagctcgattgagaatagtgaaaactcttgaagactttgatctgggcccaactg 75995953
Query: 339 aaaagtgtgtgagaatcaactcggtgtccagtggtctggctgaagaagacctggaggtcc 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75995954 aaaagtgtgtgagaatcaactcggtgtccagtggtctggctgaagaagacctggaggtcc 75996013
Query: 399 tcctgcagtcccgggtccttccttccagcctgatgctcccaaaggtggaaggtcctgaag 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75996014 tcctgcagtcccgggtccttccttccagcctgatgctcccaaaggtggaaggtcctgaag 75996073
Query: 459 aaatccg 465
|||||||
Sbjct: 75996074 aaatccg 75996080
Score = 343 bits (173), Expect = 1e-91
Identities = 173/173 (100%)
Strand = Plus / Plus
Query: 664 aggtgcaacaagtcgtaaggaaacgcaggacatcctctacgcccgacaaaagattatcgt 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76003219 aggtgcaacaagtcgtaaggaaacgcaggacatcctctacgcccgacaaaagattatcgt 76003278
Query: 724 tgtagccaaggccttcgggctccaggccatcgacctggtgtacatcgacttccgggatgg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76003279 tgtagccaaggccttcgggctccaggccatcgacctggtgtacatcgacttccgggatgg 76003338
Query: 784 agaggggcttctcaagcaggcgcgagagggagctgcgatgggattcactggta 836
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76003339 agaggggcttctcaagcaggcgcgagagggagctgcgatgggattcactggta 76003391
Score = 206 bits (104), Expect = 2e-50
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 469 gttttcagacaaattttcactctacttaaaaggccgcaaacttgaacaacctatgaattt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75999987 gttttcagacaaattttcactctacttaaaaggccgcaaacttgaacaacctatgaattt 76000046
Query: 529 aatcccttttgtggaaactgcaatgggtttgctcaattttaagg 572
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76000047 aatcccttttgtggaaactgcaatgggtttgctcaattttaagg 76000090
Score = 198 bits (100), Expect = 4e-48
Identities = 124/128 (96%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 833 ggtaagcaggtgatacaccctaaccaaatcgcagtggtccaggagcagttttctccttcc 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76008153 ggtaagcaggtgatacaccctaaccaaatcgcagtggtccaggagcagttttctccttcc 76008212
Query: 893 cctgaaaaaattaa-tgggcttgaagagctgattgctgccttttaggaacatcagc-att 950
|||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||
Sbjct: 76008213 cctgaaaaaattaagtgggc-tgaagagctgattgctgcctttaaggaacatcagcaatt 76008271
Query: 951 aggaaagg 958
||||||||
Sbjct: 76008272 aggaaagg 76008279
Score = 188 bits (95), Expect = 4e-45
Identities = 98/99 (98%)
Strand = Plus / Plus
Query: 570 aggccgtgtgtgaagaagctctaaagaacgggcctcaagtgggtctttctctagatgcag 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76001805 aggccgtgtgtgaagaagctctaaagaacgggcctcaagtgggtctttctctagatgcag 76001864
Query: 630 tcgtttttggaggagaagactttcgagccagcataggtg 668
|| ||||||||||||||||||||||||||||||||||||
Sbjct: 76001865 tcatttttggaggagaagactttcgagccagcataggtg 76001903
Score = 186 bits (94), Expect = 2e-44
Identities = 94/94 (100%)
Strand = Plus / Minus
Query: 1 tggcgggggcggggcgcgcgttgagaagatggcgctgcgtctgctgaggagggcggcgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75734336 tggcgggggcggggcgcgcgttgagaagatggcgctgcgtctgctgaggagggcggcgcg 75734277
Query: 61 tggagcggcggccgcggcggcgctgccaaggctg 94
||||||||||||||||||||||||||||||||||
Sbjct: 75734276 tggagcggcggccgcggcggcgctgccaaggctg 75734243
Score = 89.7 bits (45), Expect = 3e-15
Identities = 47/48 (97%)
Strand = Plus / Plus
Query: 957 ggagcctttactttcggaggnagcatgatcgacatgccattactgaag 1004
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 76023837 ggagcctttactttcggagggagcatgatcgacatgccattactgaag 76023884
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 29,603,404
Number of extensions: 214
Number of successful extensions: 214
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 8
Length of query: 1004
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 983
Effective length of database: 2,808,413,156
Effective search space: 2760670132348
Effective search space used: 2760670132348
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)