Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098826.1| COMM domain-containing protein 2 [Bos taurus]. 356 1e-98
>ref|NP_001098826.1| COMM domain-containing protein 2 [Bos taurus].
Length = 199
Score = 356 bits (914), Expect = 1e-98
Identities = 182/199 (91%), Positives = 187/199 (93%)
Frame = +3
Query: 57 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 236
MLLDLSEEHKEHLAFLP+VDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKL VSSDTVQH
Sbjct: 1 MLLDLSEEHKEHLAFLPKVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLSVSSDTVQH 60
Query: 237 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDXXXXXXXXXXDNRKEIRTILSELAPD 416
GVEGLIYLLTESSKLMISELDFQDSVF+LGF E+ DNRKEIRTILSELAPD
Sbjct: 61 GVEGLIYLLTESSKLMISELDFQDSVFILGFPEELNKLLLQLYLDNRKEIRTILSELAPD 120
Query: 417 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 596
LPSYHSLEWRLDVQLASRSLRQQIKP+VTIKLHLNQNG+HNTQVLQTDPATLLHLVQQLE
Sbjct: 121 LPSYHSLEWRLDVQLASRSLRQQIKPSVTIKLHLNQNGDHNTQVLQTDPATLLHLVQQLE 180
Query: 597 QALEEMKTNHCRRVVRNIK 653
QALEEMKTNHCRRVVRNIK
Sbjct: 181 QALEEMKTNHCRRVVRNIK 199
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 33,090,095
Number of extensions: 790331
Number of successful extensions: 2234
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2229
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 219
Effective length of database: 14,306,398
Effective search space: 3133101162
Effective search space used: 3133101162
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_542834.2| PREDICTED: similar to COMM domain containing 2 ... 353 1e-97
>ref|XP_542834.2| PREDICTED: similar to COMM domain containing 2 [Canis familiaris].
Length = 199
Score = 353 bits (907), Expect = 1e-97
Identities = 180/199 (90%), Positives = 186/199 (93%)
Frame = +3
Query: 57 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 236
MLLDLSEEHKEHLAFLPQVDS VVAEFGRIAVEFLRRGSNPK+YEGAARKL VSSDTVQH
Sbjct: 1 MLLDLSEEHKEHLAFLPQVDSTVVAEFGRIAVEFLRRGSNPKVYEGAARKLSVSSDTVQH 60
Query: 237 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDXXXXXXXXXXDNRKEIRTILSELAPD 416
GVEGL YLLTESSKLMISELDFQDSVFVLGFSE+ DNRKEIRTILSEL+PD
Sbjct: 61 GVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILSELSPD 120
Query: 417 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 596
LPSYHSLEWRLDVQLASRSLRQQIKP+VTIKLHLNQNG+HNT+VLQTDPATLLHLVQQLE
Sbjct: 121 LPSYHSLEWRLDVQLASRSLRQQIKPSVTIKLHLNQNGDHNTKVLQTDPATLLHLVQQLE 180
Query: 597 QALEEMKTNHCRRVVRNIK 653
QALEEMKTNHCRRVVRNIK
Sbjct: 181 QALEEMKTNHCRRVVRNIK 199
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,468,355
Number of extensions: 811761
Number of successful extensions: 2283
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2283
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 218
Effective length of database: 15,440,896
Effective search space: 3366115328
Effective search space used: 3366115328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132530.1| PREDICTED: COMM domain-containing protein 2-... 367 e-102
>ref|XP_003132530.1| PREDICTED: COMM domain-containing protein 2-like isoform 1 [Sus
scrofa].
Length = 199
Score = 367 bits (941), Expect = e-102
Identities = 189/199 (94%), Positives = 189/199 (94%)
Frame = +3
Query: 57 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 236
MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH
Sbjct: 1 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 60
Query: 237 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDXXXXXXXXXXDNRKEIRTILSELAPD 416
GVEGLIYLLTESSKLMISELDFQDSVFVLGFSED DNRKEIRTILSELAPD
Sbjct: 61 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDLNKLLLQLYLDNRKEIRTILSELAPD 120
Query: 417 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 596
LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE
Sbjct: 121 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 180
Query: 597 QALEEMKTNHCRRVVRNIK 653
QALEEMKTNHCRRVVRNIK
Sbjct: 181 QALEEMKTNHCRRVVRNIK 199
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,184,763
Number of extensions: 501032
Number of successful extensions: 1365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1362
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 222
Effective length of database: 8,879,129
Effective search space: 1971166638
Effective search space used: 1971166638
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780304.2| COMM domain-containing protein 2 [Mus musculus]. 342 2e-94
>ref|NP_780304.2| COMM domain-containing protein 2 [Mus musculus].
Length = 199
Score = 342 bits (878), Expect = 2e-94
Identities = 175/199 (87%), Positives = 183/199 (91%)
Frame = +3
Query: 57 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 236
MLLDLSEEHKEHLAFLPQVD+AVVAEFGRIAVEFLRRGSNPKIYEGAARKL VSSDT+QH
Sbjct: 1 MLLDLSEEHKEHLAFLPQVDTAVVAEFGRIAVEFLRRGSNPKIYEGAARKLNVSSDTIQH 60
Query: 237 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDXXXXXXXXXXDNRKEIRTILSELAPD 416
GVEGL YLLTESSKLMISELDFQDSVFVLGFSE+ DNRKEIRTIL+ELAP
Sbjct: 61 GVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILNELAPR 120
Query: 417 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 596
LPSYHSLEWRLDVQLASRSLRQQIKP VTIKLHL+QNG+H+T LQTDPATLLHLVQQLE
Sbjct: 121 LPSYHSLEWRLDVQLASRSLRQQIKPAVTIKLHLDQNGDHSTHFLQTDPATLLHLVQQLE 180
Query: 597 QALEEMKTNHCRRVVRNIK 653
QALEEMKTNHCRRVVR+IK
Sbjct: 181 QALEEMKTNHCRRVVRSIK 199
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,273,191
Number of extensions: 698984
Number of successful extensions: 1908
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1908
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 220
Effective length of database: 12,583,923
Effective search space: 2768463060
Effective search space used: 2768463060
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057178.2| COMM domain-containing protein 2 [Homo sapiens]. 350 1e-96
>ref|NP_057178.2| COMM domain-containing protein 2 [Homo sapiens].
Length = 199
Score = 350 bits (898), Expect = 1e-96
Identities = 179/199 (89%), Positives = 185/199 (92%)
Frame = +3
Query: 57 MLLDLSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGSNPKIYEGAARKLGVSSDTVQH 236
MLL+LSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRG+NPKIYEGAARKL VSSDTVQH
Sbjct: 1 MLLELSEEHKEHLAFLPQVDSAVVAEFGRIAVEFLRRGANPKIYEGAARKLNVSSDTVQH 60
Query: 237 GVEGLIYLLTESSKLMISELDFQDSVFVLGFSEDXXXXXXXXXXDNRKEIRTILSELAPD 416
GVEGL YLLTESSKLMISELDFQDSVFVLGFSE+ DNRKEIRTILSELAP
Sbjct: 61 GVEGLTYLLTESSKLMISELDFQDSVFVLGFSEELNKLLLQLYLDNRKEIRTILSELAPS 120
Query: 417 LPSYHSLEWRLDVQLASRSLRQQIKPTVTIKLHLNQNGEHNTQVLQTDPATLLHLVQQLE 596
LPSYH+LEWRLDVQLASRSLRQQIKP VTIKLHLNQNG+HNT+VLQTDPATLLHLVQQLE
Sbjct: 121 LPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNGDHNTKVLQTDPATLLHLVQQLE 180
Query: 597 QALEEMKTNHCRRVVRNIK 653
QALEEMKTNHCRRVVRNIK
Sbjct: 181 QALEEMKTNHCRRVVRNIK 199
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 34,027,002
Number of extensions: 806971
Number of successful extensions: 2146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2146
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 218
Effective length of database: 14,901,872
Effective search space: 3248608096
Effective search space used: 3248608096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008634
(964 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 1007 0.0
Sscrofa_Chr14 337 7e-90
>Sscrofa_Chr13
|| Length = 218635234
Score = 1007 bits (508), Expect = 0.0
Identities = 508/508 (100%)
Strand = Plus / Minus
Query: 457 agcttgcaagcagaagcctcaggcaacagattaaaccaacagtgactataaagctgcacc 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017970 agcttgcaagcagaagcctcaggcaacagattaaaccaacagtgactataaagctgcacc 98017911
Query: 517 ttaatcagaatggagaacacaacacccaagttcttcagacagacccagccactttgctcc 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017910 ttaatcagaatggagaacacaacacccaagttcttcagacagacccagccactttgctcc 98017851
Query: 577 atttggttcagcaattggaacaagcattggaggaaatgaaaacaaaccactgtaggagag 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017850 atttggttcagcaattggaacaagcattggaggaaatgaaaacaaaccactgtaggagag 98017791
Query: 637 ttgtgcgcaacatcaagtagtcccagttttatagttttcttccctttaaatcacttgtga 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017790 ttgtgcgcaacatcaagtagtcccagttttatagttttcttccctttaaatcacttgtga 98017731
Query: 697 attgatgacatgcagcaattacttttcaaagttaattttttaaattgatagtgataaaca 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017730 attgatgacatgcagcaattacttttcaaagttaattttttaaattgatagtgataaaca 98017671
Query: 757 caaaaatttcataaaatttcttttcctatcaagatactaaagtcatgatcgaaggctaag 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017670 caaaaatttcataaaatttcttttcctatcaagatactaaagtcatgatcgaaggctaag 98017611
Query: 817 taaagtttctttcctggtgctaaatgtggtctgcttcttaacaatccatatgtattttgt 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017610 taaagtttctttcctggtgctaaatgtggtctgcttcttaacaatccatatgtattttgt 98017551
Query: 877 atttttaatgtgtaaataagattgaatcaaccaaaagtgaatctatactgttcacatcct 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98017550 atttttaatgtgtaaataagattgaatcaaccaaaagtgaatctatactgttcacatcct 98017491
Query: 937 ctgtgtatataagtgactatcctttttt 964
||||||||||||||||||||||||||||
Sbjct: 98017490 ctgtgtatataagtgactatcctttttt 98017463
Score = 347 bits (175), Expect = 7e-93
Identities = 175/175 (100%)
Strand = Plus / Minus
Query: 284 gatttctgaactggatttccaagactctgtttttgttctgggattctctgaagacttaaa 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98018988 gatttctgaactggatttccaagactctgtttttgttctgggattctctgaagacttaaa 98018929
Query: 344 caaattgttgcttcagctttatctggacaacagaaaagagatcagaactatcctgagtga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98018928 caaattgttgcttcagctttatctggacaacagaaaagagatcagaactatcctgagtga 98018869
Query: 404 attggcaccagaccttcccagttaccacagccttgaatggagactagacgtacag 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98018868 attggcaccagaccttcccagttaccacagccttgaatggagactagacgtacag 98018814
Score = 242 bits (122), Expect = 3e-61
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 2 ggaagtggcgagggcggggatagtgctgcgggttgaaatccgcataccggtgaagatgct 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98024316 ggaagtggcgagggcggggatagtgctgcgggttgaaatccgcataccggtgaagatgct 98024257
Query: 62 gcttgacctgtccgaggaacataaggagcatcttgccttcctgccgcaagtggacagcgc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98024256 gcttgacctgtccgaggaacataaggagcatcttgccttcctgccgcaagtggacagcgc 98024197
Query: 122 ag 123
||
Sbjct: 98024196 ag 98024195
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 202 gaaaacttggtgtgagtagtgacactgtacagcatggtgtggaaggattaatatacctcc 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98022706 gaaaacttggtgtgagtagtgacactgtacagcatggtgtggaaggattaatatacctcc 98022647
Query: 262 tcactgaaagctcaaagctcatg 284
|||||||||||||||||||||||
Sbjct: 98022646 tcactgaaagctcaaagctcatg 98022624
Score = 165 bits (83), Expect = 6e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 120 gcagtggtcgccgagtttgggcgaattgcggtggagttcctgaggcgaggctcgaacccc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98024098 gcagtggtcgccgagtttgggcgaattgcggtggagttcctgaggcgaggctcgaacccc 98024039
Query: 180 aagatctacgaaggcgctgcgag 202
|||||||||||||||||||||||
Sbjct: 98024038 aagatctacgaaggcgctgcgag 98024016
>Sscrofa_Chr14
|| Length = 153851969
Score = 337 bits (170), Expect = 7e-90
Identities = 342/398 (85%), Gaps = 1/398 (0%)
Strand = Plus / Minus
Query: 355 ttcagctttatctggacaacagaaaagagatcagaactatcctgagtgaattggcaccag 414
|||||||||||||||||||||| || |||||||||||||||||||||||| | ||||||
Sbjct: 116505252 ttcagctttatctggacaacagtaaggagatcagaactatcctgagtgaagag-caccag 116505194
Query: 415 accttcccagttaccacagccttgaatggagactagacgtacagcttgcaagcagaagcc 474
|| |||||||| || |||||||||| |||||| ||| |||| | ||||||||||||
Sbjct: 116505193 actttcccagtcactacagccttgagtggagatgagatagacagtctacaagcagaagcc 116505134
Query: 475 tcaggcaacagattaaaccaacagtgactataaagctgcaccttaatcagaatggagaac 534
|||||||||||||||||||| |||||||||||||||| || ||||||||||| ||| | |
Sbjct: 116505133 tcaggcaacagattaaaccaccagtgactataaagctacagcttaatcagaagggacatc 116505074
Query: 535 acaacacccaagttcttcagacagacccagccactttgctccatttggttcagcaattgg 594
|| ||||||| |||| ||| |||||||||||| |||||||||||||| |||||||||
Sbjct: 116505073 accacacccacattctggagagagacccagccaccctgctccatttggtttagcaattgg 116505014
Query: 595 aacaagcattggaggaaatgaaaacaaaccactgtaggagagttgtgcgcaacatcaagt 654
||||||||||| |||| |||||||||||| || ||| |||||||| | | |||| |
Sbjct: 116505013 aacaagcattgaaggaggtgaaaacaaacccctctagcagagttgtaagaagtatcatct 116504954
Query: 655 agtcccagttttatagttttcttccctttaaatcacttgtgaattgatgacatgcagcaa 714
||||||| ||||| ||||| |||||||| |||||| ||||||||||||| ||| ||||
Sbjct: 116504953 agtcccaattttaaggttttattccctttgaatcacatgtgaattgatgatatgtagcag 116504894
Query: 715 ttacttttcaaagttaattttttaaattgatagtgata 752
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 116504893 ttacttttcaaagttaatttttaaaattaatagtgata 116504856
Score = 75.8 bits (38), Expect = 4e-11
Identities = 123/150 (82%), Gaps = 6/150 (4%)
Strand = Plus / Minus
Query: 798 gtcatgatcgaaggctaagtaaagtttctttcctggtgctaaatgtggtctgcttcttaa 857
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Sbjct: 116504278 gtcatgatcaaaagctaagtaaagttcctttcctgatgctaaatgtggttagcttcttga 116504219
Query: 858 caatccatatgtattttgtatttttaatgtgtaaataagattgaatcaaccaaaagtgaa 917
||| ||| |||||||||| || || ||| || || ||||||||| |||||||
Sbjct: 116504218 taat---tat---atttgtattttaaaggtctaagtaggagtgaatcaactggaagtgaa 116504165
Query: 918 tctatactgttcacatcctctgtgtatata 947
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Sbjct: 116504164 tctatactgtttaaatcctctgtatatata 116504135
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,950,946
Number of extensions: 403
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 8
Length of query: 964
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 943
Effective length of database: 2,808,413,156
Effective search space: 2648333606108
Effective search space used: 2648333606108
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)