Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068882.1| interferon-induced protein with tetratricope... 542 e-154
Alignment gi|XP_001787875.1| PREDICTED: interferon-induced protein with t... 384 e-107
Alignment gi|XP_002698402.1| PREDICTED: interferon-induced protein with t... 384 e-107
Alignment gi|NP_001069166.1| interferon-induced protein with tetratricope... 291 8e-79
Alignment gi|XP_002698403.1| PREDICTED: interferon-induced protein with t... 278 5e-75
Alignment gi|XP_001787879.1| PREDICTED: interferon-induced protein with t... 278 5e-75
>ref|NP_001068882.1| interferon-induced protein with tetratricopeptide repeats 3 [Bos
taurus].
Length = 485
Score = 542 bits (1396), Expect = e-154
Identities = 271/372 (72%), Positives = 306/372 (82%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE +KNSLE+ILPQL+CHFTWNL K+ V HDLEDRVCNQTE LNSEFKAT YNLLAYI
Sbjct: 1 MSE-DKNSLEQILPQLRCHFTWNLFKKGSVSHDLEDRVCNQTEFLNSEFKATKYNLLAYI 59
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL GQN +IQ+EHTDQAE+RSLVTWGNYAWVYYHLGR ++AQ+Y DKV
Sbjct: 60 KHLKGQNEAALECLRQAEEWIQREHTDQAEVRSLVTWGNYAWVYYHLGRFADAQLYADKV 119
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
K+VC+KF+NPYSIECPELDCEEGWTL+KCGGK+IE+AKVYF+KALEEKP+NPEFSSGLAI
Sbjct: 120 KRVCQKFANPYSIECPELDCEEGWTLVKCGGKKIERAKVYFQKALEEKPNNPEFSSGLAI 179
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AMY+L+ +P QQSS++ILK+A+ELSPDNQYIKVLLALTLQK N KAP
Sbjct: 180 AMYYLDDRPEQQSSLEILKQAVELSPDNQYIKVLLALTLQKTNEQSEGEQLVVEALEKAP 239
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
QTDVL SAAKFYR KGDLDKAI L L ALES PNN YLYHQIACCYRAKVKQ+ GES
Sbjct: 240 CQTDVLLSAAKFYRGKGDLDKAIGLLLRALESIPNNPYLYHQIACCYRAKVKQIQHTGES 299
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
EA E IEELR++A++YV+KAIEKGLNPL+A SD E LE EC+QTAF KELPST+
Sbjct: 300 EAIGKGEKIEELREHARNYVSKAIEKGLNPLHACSD--EFLENEECYQTAFSKELPSTKG 357
Query: 1189 QQLHQRSCNSQE 1224
Q+LHQ CN QE
Sbjct: 358 QELHQHDCNPQE 369
>ref|XP_001787875.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
2 [Bos taurus].
Length = 463
Score = 384 bits (987), Expect = e-107
Identities = 209/382 (54%), Positives = 250/382 (65%), Gaps = 9/382 (2%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE KNSLE L QLK HFTWNL + EH D EDRVC+QTE NSEFKATM N+ A+I
Sbjct: 1 MSETTKNSLEHSLQQLKSHFTWNLVEGEHSLDDFEDRVCHQTEFQNSEFKATMCNIQAFI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KH GQ+ FIQ+EH DQAE+RSLVTWGN+AWVYYHLGR ++AQ+YVDKV
Sbjct: 61 KHCRGQHQAALECLRQAEEFIQREHADQAEVRSLVTWGNHAWVYYHLGRFADAQLYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
K+VC+KFS+PY IE PELDCEEGWT LKCG Q E+AKV FEKALE+ P NPEF+SGLAI
Sbjct: 121 KRVCQKFSSPYRIESPELDCEEGWTRLKCGRNQNERAKVCFEKALEKNPKNPEFASGLAI 180
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
A Y L+ +P Q+ ++ L++AI+L+PDNQY+KVLLAL LQKMN KAP
Sbjct: 181 ASYRLDNQPPSQNPINPLRQAIQLNPDNQYVKVLLALKLQKMNKKDEGERLVEEALEKAP 240
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
TDV+R AAK YR KGDLD AIEL AL+ PNN YL+ I CCYRAKV ++ G
Sbjct: 241 LATDVIRGAAKLYRRKGDLDLAIELLRKALKCMPNNIYLHCHIGCCYRAKVLEVEKMG-- 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKG---------LNPLYAYSDSTELLEIXECHQTAF 1161
RE +++L ++A D++ +A E L L+A E E Q F
Sbjct: 299 ---GEREELQKLVRHAIDHLKRADESNGNFFRIGSYLACLHAQVGQYE--EAEYYFQKEF 353
Query: 1162 XKELPSTEAQQLHQRSCNSQEY 1227
KELP Q LH R N Q Y
Sbjct: 354 SKELPPVAKQVLHLRYGNFQLY 375
>ref|XP_002698402.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
2 [Bos taurus].
Length = 463
Score = 384 bits (986), Expect = e-107
Identities = 209/382 (54%), Positives = 250/382 (65%), Gaps = 9/382 (2%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE KNSLE L QLK HFTWNL + EH D EDRVC+QTE NSEFKATM N+ A+I
Sbjct: 1 MSETTKNSLEHSLQQLKSHFTWNLVEGEHSLDDFEDRVCHQTEFQNSEFKATMCNIQAFI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KH GQ+ FIQ+EH DQAE+RSLVTWGN+AWVYYHLGR ++AQ+YVDKV
Sbjct: 61 KHRRGQHQAALECLRQAEEFIQREHADQAEVRSLVTWGNHAWVYYHLGRFADAQLYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
K+VC+KFS+PY IE PELDCEEGWT LKCG Q E+AKV FEKALE+ P NPEF+SGLAI
Sbjct: 121 KRVCQKFSSPYRIESPELDCEEGWTRLKCGRNQNERAKVCFEKALEKNPKNPEFASGLAI 180
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
A Y L+ +P Q+ ++ L++AI+L+PDNQY+KVLLAL LQKMN KAP
Sbjct: 181 ASYRLDNQPPSQNPINPLRQAIQLNPDNQYVKVLLALKLQKMNKKDEGERLVEEALEKAP 240
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
TDV+R AAK YR KGDLD AIEL AL+ PNN YL+ I CCYRAKV ++ G
Sbjct: 241 LATDVIRGAAKLYRRKGDLDLAIELLRKALKCMPNNIYLHCHIGCCYRAKVLEVEKMG-- 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKG---------LNPLYAYSDSTELLEIXECHQTAF 1161
RE +++L ++A D++ +A E L L+A E E Q F
Sbjct: 299 ---GEREELQKLVRHAIDHLKRADESNGNFFRIGSYLACLHAQVGQYE--EAEYYFQKEF 353
Query: 1162 XKELPSTEAQQLHQRSCNSQEY 1227
KELP Q LH R N Q Y
Sbjct: 354 SKELPPVAKQVLHLRYGNFQLY 375
>ref|NP_001069166.1| interferon-induced protein with tetratricopeptide repeats 5 [Bos
taurus].
Length = 482
Score = 291 bits (745), Expect = 8e-79
Identities = 155/343 (45%), Positives = 215/343 (62%), Gaps = 7/343 (2%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE+ K+ L+ IL +L+CHFTWNL KE+ D+ED + Q E L ++ + T+YNLLAY+
Sbjct: 1 MSEIPKDCLKTILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYNLLAYV 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL GQN I++EH+D+ +RSLVTWGNYAWVYY +G+L EAQ Y+ K+
Sbjct: 61 KHLKGQNEDALKCLKQAEEIIRREHSDKEGVRSLVTWGNYAWVYYDMGQLKEAQKYIGKI 120
Query: 469 KQVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGL 642
VC+ S+P Y +E PE+DCE+GW LLK GGK +KAK FEKALE +PDNPEF+ G
Sbjct: 121 GSVCKTLSSPSDYKLERPEIDCEKGWALLKFGGKYYQKAKAAFEKALEAEPDNPEFNIGY 180
Query: 643 AIAMYFLNGKPAQQS----SVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXX 810
AI +Y L+ + S S+ L++A+ L+PDN YIKV LAL LQ ++
Sbjct: 181 AITVYRLDDSDREGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEE 240
Query: 811 XXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQL 990
+ Q VLR AAKFYR K DKA+EL ALE TP + +L+HQ+ CYRA++ Q+
Sbjct: 241 ILDQISAQPYVLRYAAKFYRRKNSWDKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQI 300
Query: 991 LDAGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSD 1116
A + +++ ++EL A + A+E+ +AY+D
Sbjct: 301 KKATRNRPKGKDKLKVDELITSAISHFKAAVERDSMFAFAYTD 343
>ref|XP_002698403.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
5-like [Bos taurus].
Length = 478
Score = 278 bits (712), Expect = 5e-75
Identities = 150/357 (42%), Positives = 215/357 (60%), Gaps = 9/357 (2%)
Frame = +1
Query: 115 EVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKH 294
+ +++ L+ L L+CHFTW++ E DLE+RV + L+ ++ +YNLLAY+KH
Sbjct: 4 KADEDQLKDKLLLLRCHFTWDMIIAETEIPDLENRVLEEIMFLDIKYNVGIYNLLAYVKH 63
Query: 295 LNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQ 474
L GQN QQEH +Q+E+RSLVTWGNYAW++YH+G+ +EAQIY+DKVK
Sbjct: 64 LRGQNEEALKSLQKAEDLSQQEHANQSEVRSLVTWGNYAWLHYHMGQQAEAQIYLDKVKN 123
Query: 475 VCEKFSN--PYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
C K N Y + CP++DCEEGW LLKCGGK E+AKV FEKALE P+NPEFS+G AI
Sbjct: 124 TCRKLGNSSSYRMACPQMDCEEGWALLKCGGKNYERAKVCFEKALEVDPENPEFSTGYAI 183
Query: 649 AMYFLNGKPAQQSSVDI----LKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXX 816
+Y L G Q S + LK+A++L+P++ YIK LL L LQ +
Sbjct: 184 VVYRLEGFNKAQISAEFCLNTLKQAVKLNPNDAYIKALLGLKLQDVEQEAEGEKYIKEAL 243
Query: 817 XKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLD 996
A + V R AAKFYR KG LD+A+ L ALE TP++ +L+HQ CY++++ Q+
Sbjct: 244 TNASSKAYVFRYAAKFYRRKGVLDEALRLSKLALEETPSSAFLHHQTGLCYKSQISQIKF 303
Query: 997 AGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLY--AYSDSTELLEIXECHQTA 1158
A + +++E I + A ++ +A++ L P + AY+ E+ H+ A
Sbjct: 304 ATNCQPKGQDKENINRIIPLAIHHLERAVQ--LKPTFELAYTSLAEMYAEAGDHRKA 358
>ref|XP_001787879.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
5-like [Bos taurus].
Length = 478
Score = 278 bits (712), Expect = 5e-75
Identities = 150/357 (42%), Positives = 215/357 (60%), Gaps = 9/357 (2%)
Frame = +1
Query: 115 EVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKH 294
+ +++ L+ L L+CHFTW++ E DLE+RV + L+ ++ +YNLLAY+KH
Sbjct: 4 KADEDQLKDKLLLLRCHFTWDMIIAETEIPDLENRVLEEIMFLDIKYNVGIYNLLAYVKH 63
Query: 295 LNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQ 474
L GQN QQEH +Q+E+RSLVTWGNYAW++YH+G+ +EAQIY+DKVK
Sbjct: 64 LRGQNEEALKSLQKAEDLSQQEHANQSEVRSLVTWGNYAWLHYHMGQQAEAQIYLDKVKN 123
Query: 475 VCEKFSN--PYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
C K N Y + CP++DCEEGW LLKCGGK E+AKV FEKALE P+NPEFS+G AI
Sbjct: 124 TCRKLGNSSSYRMACPQMDCEEGWALLKCGGKNYERAKVCFEKALEVDPENPEFSTGYAI 183
Query: 649 AMYFLNGKPAQQSSVDI----LKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXX 816
+Y L G Q S + LK+A++L+P++ YIK LL L LQ +
Sbjct: 184 VVYRLEGFNKAQISAEFCLNTLKQAVKLNPNDAYIKALLGLKLQDVEQEAEGEKYIKEAL 243
Query: 817 XKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLD 996
A + V R AAKFYR KG LD+A+ L ALE TP++ +L+HQ CY++++ Q+
Sbjct: 244 TNASSKAYVFRYAAKFYRRKGVLDEALRLSKLALEETPSSAFLHHQTGLCYKSQISQIKF 303
Query: 997 AGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLY--AYSDSTELLEIXECHQTA 1158
A + +++E I + A ++ +A++ L P + AY+ E+ H+ A
Sbjct: 304 ATNCQPKGQDKENINRIIPLAIHHLERAVQ--LKPTFELAYTSLAEMYAEAGDHRKA 358
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 41,597,642
Number of extensions: 998308
Number of successful extensions: 2526
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2516
Number of HSP's successfully gapped: 6
Length of query: 409
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,207,134
Effective search space: 4318968736
Effective search space used: 4318968736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_848320.1| PREDICTED: similar to interferon-induced protei... 344 1e-94
Alignment gi|XP_536324.2| PREDICTED: similar to interferon-induced protei... 339 4e-93
Alignment gi|XP_543917.2| PREDICTED: similar to Interferon-induced protei... 305 8e-83
Alignment gi|XP_848364.1| PREDICTED: similar to interferon-induced protei... 288 6e-78
Alignment gi|XP_848342.1| PREDICTED: similar to interferon-induced protei... 226 3e-59
>ref|XP_848320.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 3 [Canis familiaris].
Length = 382
Score = 344 bits (882), Expect = 1e-94
Identities = 177/261 (67%), Positives = 203/261 (77%)
Frame = +1
Query: 439 SEAQIYVDKVKQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPD 618
++AQIYVDKV+QVCEKFSNPYSIEC EL CEEGWT LKCG E+AKV FEKALEEKP+
Sbjct: 4 ADAQIYVDKVRQVCEKFSNPYSIECSELYCEEGWTRLKCGANHNERAKVCFEKALEEKPN 63
Query: 619 NPEFSSGLAIAMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXX 798
NPEF+SGLAIAMY L+ KP + S++ILK+A+EL+ DNQYIKVLLAL LQ+MN
Sbjct: 64 NPEFASGLAIAMYCLDNKPQKPVSINILKQALELNHDNQYIKVLLALKLQRMNEEADGEQ 123
Query: 799 XXXXXXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAK 978
AP QTDVLR+AA FY+ KGDLDKAIELFL A ES PNNGYLYHQIACCYRAK
Sbjct: 124 LVLEALKNAPCQTDVLRNAATFYQKKGDLDKAIELFLRASESLPNNGYLYHQIACCYRAK 183
Query: 979 VKQLLDAGESEASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTA 1158
VKQ+ + G EASRNRE IE+L+K A D+V KAIEKG++PLYAY+D T+LLE +Q A
Sbjct: 184 VKQIQNTGRCEASRNREKIEDLKKCAIDFVIKAIEKGVDPLYAYADITDLLETEPYYQVA 243
Query: 1159 FXKELPSTEAQQLHQRSCNSQ 1221
KELPSTE QQ HQ N Q
Sbjct: 244 CSKELPSTERQQPHQHYPNFQ 264
>ref|XP_536324.2| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 2 [Canis familiaris].
Length = 474
Score = 339 bits (869), Expect = 4e-93
Identities = 191/381 (50%), Positives = 228/381 (59%), Gaps = 10/381 (2%)
Frame = +1
Query: 115 EVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKH 294
E + +LE L QLKCHFTW L D ED+VC+ TE N+EFKAT++N+LAYIKH
Sbjct: 9 ESTRKALESCLWQLKCHFTWTLVDGGKSLDDFEDKVCDATEFQNNEFKATVFNILAYIKH 68
Query: 295 LNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQ 474
G N IQ+EH+DQAEIRSLVTWGNYAWVYYHLGR ++AQIYVDKV++
Sbjct: 69 RRGHNKAALECLWQAEELIQREHSDQAEIRSLVTWGNYAWVYYHLGRFADAQIYVDKVRR 128
Query: 475 VCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAM 654
VCEK +PYS+E PELD +EGW L+CG K E+AKV FEKALE P NPEF SGLAIA
Sbjct: 129 VCEKSHSPYSLESPELDFQEGWARLQCGRKHNERAKVCFEKALERNPKNPEFISGLAIAS 188
Query: 655 YFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAPRQ 834
Y L P Q+ ++ L+ AI L+PDNQY+KVLLAL LQKM +
Sbjct: 189 YRLETWPLPQNPINPLRRAIRLNPDNQYVKVLLALKLQKMKEEGEGESLIEEVLEETSCA 248
Query: 835 TDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLL-DAGESE 1011
TDVL AAK Y+ KG LDKA+EL ALE PNN YL+ I C YR KV LL D G++E
Sbjct: 249 TDVLCGAAKLYQRKGALDKAVELLKKALEGMPNNAYLHWHIGCLYRTKVLDLLQDTGKNE 308
Query: 1012 ASRNREIIEELRKYAKDYVNKAIEKGLN---------PLYAYSDSTELLEIXECHQTAFX 1164
RE +EE A ++ + E N LYA + + E Q F
Sbjct: 309 MYGKREKLEEAMGQAVYHLKRVDEANANLSCVCSYLACLYAQAGQYDKAE--HYFQKEFS 366
Query: 1165 KELPSTEAQQLHQRSCNSQEY 1227
KEL Q LH R N Q Y
Sbjct: 367 KELSPGAKQVLHLRYGNFQLY 387
>ref|XP_543917.2| PREDICTED: similar to Interferon-induced protein with
tetratricopeptide repeats 5 (IFIT-5) (Retinoic acid- and
interferon-inducible 58 kDa protein) [Canis familiaris].
Length = 743
Score = 305 bits (780), Expect = 8e-83
Identities = 160/348 (45%), Positives = 221/348 (63%), Gaps = 7/348 (2%)
Frame = +1
Query: 94 EQTAIMSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYN 273
E +A+ E+ K SL+ IL +L+CHFTWNL KE+ D+ED + Q E L ++ + T+YN
Sbjct: 257 EPSAVRGEIPKESLKAILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYN 316
Query: 274 LLAYIKHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQI 453
LLAY+KHL GQN I++EH+D+ EIRSLVTWGNYAWVYYH+ +L E+Q
Sbjct: 317 LLAYVKHLKGQNEDALKCLEQAEEIIRREHSDKEEIRSLVTWGNYAWVYYHMDQLKESQK 376
Query: 454 YVDKVKQVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPE 627
Y+DK+ VC+K S+P Y +ECPE+DCE+GW LLK GGK +KAK FEKALE +PDNPE
Sbjct: 377 YIDKIGNVCKKLSSPSNYKLECPEIDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPE 436
Query: 628 FSSGLAIAMYFLNGKPAQQS----SVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXX 795
F+ G AI +Y L+ + S S+ L++A+ L+PDN YIKV LAL LQ ++
Sbjct: 437 FNIGYAITVYRLDDSDREGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGE 496
Query: 796 XXXXXXXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRA 975
+ Q VLR AAKFYR K DKA+EL ALE TP + +L+HQ+ CYRA
Sbjct: 497 RYIEEILDQISSQPYVLRYAAKFYRRKNSWDKALELLKKALEVTPTSSFLHHQMGLCYRA 556
Query: 976 KVKQLLDAGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSD 1116
++ Q+ A + +++ ++EL A + A+E+ +AY+D
Sbjct: 557 QMIQIKKATRNRPKGKDKMKVDELITSAIFHFRAAVERDSMFAFAYTD 604
>ref|XP_848364.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 1 isoform 1 [Canis familiaris].
Length = 480
Score = 288 bits (738), Expect = 6e-78
Identities = 158/385 (41%), Positives = 231/385 (60%), Gaps = 16/385 (4%)
Frame = +1
Query: 121 NKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLN 300
N + ++ L QL+CHFTW L E+ DLE+R+ ++ E L++++KA ++NLLAY+KHL
Sbjct: 4 NMDEIKDKLDQLRCHFTWELLFEDTEMPDLENRILDEIEFLDTKYKAGIHNLLAYVKHLK 63
Query: 301 GQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVC 480
GQN IQQEH Q+++RSLVTWGNYAW+YYH+GRL+EAQ Y+DKV+ C
Sbjct: 64 GQNQEALESLKEAEDLIQQEHDIQSDVRSLVTWGNYAWLYYHMGRLAEAQAYLDKVENTC 123
Query: 481 EKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAM 654
KF+ P Y +ECP++D EEGW LLKCG K E+AK FEKAL E P+NPEFS+G AI M
Sbjct: 124 MKFAAPSCYRMECPQMDGEEGWALLKCGRKNYERAKACFEKALAEDPENPEFSTGYAITM 183
Query: 655 YFLNG-----KPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXX 819
Y L+ + ++ + LKEAI L+P++ YIKVLLAL LQ +
Sbjct: 184 YRLDSLNMATETSEAFCLQPLKEAIRLNPEDVYIKVLLALKLQDLGQEADGEKYIEEALN 243
Query: 820 KAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDA 999
QT V R A KFYR KG LDKA++L A ++TP++ +L+HQI CY+A ++ A
Sbjct: 244 NTSSQTYVFRYAGKFYRRKGCLDKALQLLKMAQQATPSSAFLHHQIGLCYKAFTIKIKRA 303
Query: 1000 GESEA-SRNREIIEELRKYAKDYVNKAIEKG-------LNPLYAYSDSTELLEIXECHQT 1155
+ ++RE ++++ + A + A+E+ ++ Y ++ + + + +Q
Sbjct: 304 ANWQCRGQDRENVDKMVRLAIFHFQLALEQKPTFDIAYIHLASMYIEAGDYRKAEDTYQK 363
Query: 1156 AFXK-ELPSTEAQQLHQRSCNSQEY 1227
F L + Q++H QEY
Sbjct: 364 VFSSISLDEEKLQKIHFHYGQFQEY 388
>ref|XP_848342.1| PREDICTED: similar to interferon-induced protein with
tetratricopeptide repeats 1-like [Canis familiaris].
Length = 464
Score = 226 bits (577), Expect = 3e-59
Identities = 123/263 (46%), Positives = 165/263 (62%), Gaps = 8/263 (3%)
Frame = +1
Query: 349 IQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNP--YSIECPEL 522
IQQEH Q+++RSLVTWGNYAW+YYH+GRL+EAQ Y+DKV+ C KF+ P Y +ECP++
Sbjct: 72 IQQEHDIQSDVRSLVTWGNYAWLYYHMGRLAEAQAYLDKVENTCMKFAAPSCYRMECPQM 131
Query: 523 DCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNG-----KPAQQS 687
D EEGW LLKCG K E+AK FEKAL E P+NPEFS+G AI MY L+ + ++
Sbjct: 132 DGEEGWALLKCGRKNYERAKACFEKALAEDPENPEFSTGYAITMYRLDSLNMATETSEAF 191
Query: 688 SVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAPRQTDVLRSAAKFY 867
+ LKEAI L+P++ YIKVLLAL LQ + QT V R A KFY
Sbjct: 192 CLQPLKEAIRLNPEDVYIKVLLALKLQDLGQEADGEKYIEEALNNTSSQTYVFRYAGKFY 251
Query: 868 RVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRA-KVKQLLDAGESEASRNREIIEEL 1044
R KG LDKA++L A ++TP++ +L+HQI CY+A +K A ++RE + L
Sbjct: 252 RRKGCLDKALQLLKMAQQATPSSAFLHHQIGLCYKAFTIKIKRAANWQRRGQDRENVHRL 311
Query: 1045 RKYAKDYVNKAIEKGLNPLYAYS 1113
A + KA+ L P + ++
Sbjct: 312 VHLAIYEIEKALM--LRPTFKFA 332
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 43,314,953
Number of extensions: 1024158
Number of successful extensions: 2604
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2592
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 304
Effective length of database: 15,374,224
Effective search space: 4673764096
Effective search space used: 4673764096
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001191324.1| interferon-induced protein with tetratricope... 695 0.0
Alignment gi|XP_001928706.2| PREDICTED: interferon-induced protein with t... 380 e-105
Alignment gi|XP_001925987.2| PREDICTED: interferon-induced protein with t... 298 5e-81
Alignment gi|XP_003133190.1| PREDICTED: interferon-induced protein with t... 282 3e-76
Alignment gi|XP_001928759.1| PREDICTED: interferon-induced protein with t... 282 3e-76
>ref|NP_001191324.1| interferon-induced protein with tetratricopeptide repeats 3 [Sus
scrofa].
Length = 509
Score = 695 bits (1793), Expect = 0.0
Identities = 345/373 (92%), Positives = 345/373 (92%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI
Sbjct: 1 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHLNGQN FIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV
Sbjct: 61 KHLNGQNEAALEYLQQAEEFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI
Sbjct: 121 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 180
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMN KAP
Sbjct: 181 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNEEAEGEELVVEALEKAP 240
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES
Sbjct: 241 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 300
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEI ECHQTAF KELPSTEA
Sbjct: 301 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIGECHQTAFSKELPSTEA 360
Query: 1189 QQLHQRSCNSQEY 1227
QQLHQRSCNSQEY
Sbjct: 361 QQLHQRSCNSQEY 373
>ref|XP_001928706.2| PREDICTED: interferon-induced protein with tetratricopeptide repeats
2 [Sus scrofa].
Length = 473
Score = 380 bits (975), Expect = e-105
Identities = 205/383 (53%), Positives = 247/383 (64%), Gaps = 7/383 (1%)
Frame = +1
Query: 100 TAIMSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLL 279
TAIMSE KNSLE L QLKCHFTWNL + E D EDRVCN+TE NSEFKATM N+
Sbjct: 3 TAIMSETTKNSLESCLQQLKCHFTWNLVEGESSLDDFEDRVCNKTEFQNSEFKATMCNIQ 62
Query: 280 AYIKHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYV 459
AYIK GQ+ FI++EH QAEIRSLVTWGNYAWVYYHLGRL+EAQIYV
Sbjct: 63 AYIKDCRGQHEAALECLRQAEEFIRREHASQAEIRSLVTWGNYAWVYYHLGRLAEAQIYV 122
Query: 460 DKVKQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSG 639
DKVKQVC+KFS+PY IE E+DCEEGWT LKCGG Q E+AK+ F+KAL + P +PE +SG
Sbjct: 123 DKVKQVCKKFSSPYRIERSEMDCEEGWTRLKCGGNQNERAKMCFQKALAKSPKDPEVTSG 182
Query: 640 LAIAMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXX 819
LAIA Y L+ P ++S+D L++A+ L+PDNQY+KVLLA+ L+KMN
Sbjct: 183 LAIASYRLDNWPPPRNSIDPLRQAVRLNPDNQYVKVLLAMKLRKMNEANEGERLVEEALK 242
Query: 820 KAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDA 999
KAP TDVLR AAK YR KGDLD+AIEL AL+ PNN +L+ I CYRAKV +
Sbjct: 243 KAPFATDVLRRAAKLYRSKGDLDQAIELLRQALKFMPNNAHLHFHIGSCYRAKVLETQKT 302
Query: 1000 GESEASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYS-------DSTELLEIXECHQTA 1158
E+E RE ++EL +A ++ +A + N S + + E Q
Sbjct: 303 AENEMCGKREKLQELIGHALHHLRRAEKINGNLFLVCSYLACLCVQAGQYEEAEYYFQKE 362
Query: 1159 FXKELPSTEAQQLHQRSCNSQEY 1227
F KELP Q LH R N Q Y
Sbjct: 363 FSKELPPVAKQVLHLRYGNFQLY 385
>ref|XP_001925987.2| PREDICTED: interferon-induced protein with tetratricopeptide repeats
5 [Sus scrofa].
Length = 482
Score = 298 bits (762), Expect = 5e-81
Identities = 158/343 (46%), Positives = 218/343 (63%), Gaps = 7/343 (2%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE+ K+SL+ IL +L+CHFTWNL KE+ D+ED + Q E L ++ + T+YNLLAY+
Sbjct: 1 MSEIPKDSLKAILLELECHFTWNLLKEDIDLFDVEDTIGQQLEFLTTKSRLTLYNLLAYV 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL GQN IQ+EH+D+ E+RSLVTWGNYAWVYYH+ +L E Q Y++KV
Sbjct: 61 KHLKGQNKDALDCLKQAEEIIQREHSDKEEVRSLVTWGNYAWVYYHMDQLKETQNYIEKV 120
Query: 469 KQVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGL 642
VC++FS+P Y +E PE+DCE+GW LLK GGK +KAK FE+ALE +PDNPEF+ G
Sbjct: 121 GNVCKQFSSPSNYKLERPEIDCEKGWALLKFGGKYYQKAKAAFEQALEVEPDNPEFNIGY 180
Query: 643 AIAMYFLNGKPAQQS----SVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXX 810
AI +Y L+ + S S+ L++A+ L+PDN YIKV LAL LQ ++
Sbjct: 181 AITVYRLDDSDREGSIKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEE 240
Query: 811 XXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQL 990
+ Q VLR AAKFYR K DKA+EL ALE TP + +L HQ+ CYRA++ Q+
Sbjct: 241 ILDQISSQPYVLRYAAKFYRRKNSWDKALELLKKALEVTPTSSFLNHQMGLCYRAQMIQI 300
Query: 991 LDAGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSD 1116
A + +++ ++EL A + A+E+ +AY+D
Sbjct: 301 KKATRNRPKGKDKLKVDELITSAISHFKAAVERDSMFAFAYTD 343
>ref|XP_003133190.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
1 isoform 2 [Sus scrofa].
Length = 478
Score = 282 bits (721), Expect = 3e-76
Identities = 146/333 (43%), Positives = 207/333 (62%), Gaps = 8/333 (2%)
Frame = +1
Query: 112 SEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIK 291
+ +++ ++ L QLKCHFTW L ++ DLE+RV + E L++++ ++NLLAY+K
Sbjct: 3 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 62
Query: 292 HLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVK 471
HL GQN QQEHTDQ+E+R LVTWGNYAW+YY R +EAQIY+DKVK
Sbjct: 63 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 122
Query: 472 QVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLA 645
C K +NP Y +ECP++DCEEGW LLKCGGK E+AKV F+KALE P+NPEFS+G A
Sbjct: 123 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 182
Query: 646 IAMYFLN--GKPAQQSS---VDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXX 810
I +Y L+ K A ++ LK+A+ L+P++ YIK L AL LQ++
Sbjct: 183 ITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALKLQELGQEDEGEKYIKE 242
Query: 811 XXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQL 990
K +T V R A KFYR KG LD+A++ AL++TP + +L+HQ CY++K+ Q+
Sbjct: 243 ALTKESSKTYVFRHAVKFYRRKGSLDEALQFSKLALKATPFSSFLHHQTGLCYKSKITQI 302
Query: 991 LDAGE-SEASRNREIIEELRKYAKDYVNKAIEK 1086
+ A ++E I L K A + A+++
Sbjct: 303 MKATNWQPKGEDKENISRLIKLATGHFEFAVQQ 335
>ref|XP_001928759.1| PREDICTED: interferon-induced protein with tetratricopeptide repeats
1 isoform 1 [Sus scrofa].
Length = 478
Score = 282 bits (721), Expect = 3e-76
Identities = 146/333 (43%), Positives = 207/333 (62%), Gaps = 8/333 (2%)
Frame = +1
Query: 112 SEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIK 291
+ +++ ++ L QLKCHFTW L ++ DLE+RV + E L++++ ++NLLAY+K
Sbjct: 3 NNADEDQIKDKLEQLKCHFTWELVIQDTEIPDLENRVLEEIEFLDTKYNVGIHNLLAYVK 62
Query: 292 HLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVK 471
HL GQN QQEHTDQ+E+R LVTWGNYAW+YY R +EAQIY+DKVK
Sbjct: 63 HLKGQNEGALKSLKDAEDLTQQEHTDQSEVRRLVTWGNYAWLYYLTYRKAEAQIYLDKVK 122
Query: 472 QVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLA 645
C K +NP Y +ECP++DCEEGW LLKCGGK E+AKV F+KALE P+NPEFS+G A
Sbjct: 123 DTCRKLANPSSYRMECPQMDCEEGWALLKCGGKNYERAKVCFKKALEADPENPEFSTGYA 182
Query: 646 IAMYFLN--GKPAQQSS---VDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXX 810
I +Y L+ K A ++ LK+A+ L+P++ YIK L AL LQ++
Sbjct: 183 ITIYRLDHLNKVAGFDGPFCLNALKQAVRLNPEDAYIKALFALKLQELGQEDEGEKYIKE 242
Query: 811 XXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQL 990
K +T V R A KFYR KG LD+A++ AL++TP + +L+HQ CY++K+ Q+
Sbjct: 243 ALTKESSKTYVFRHAVKFYRRKGSLDEALQFSKLALKATPFSSFLHHQTGLCYKSKITQI 302
Query: 991 LDAGE-SEASRNREIIEELRKYAKDYVNKAIEK 1086
+ A ++E I L K A + A+++
Sbjct: 303 MKATNWQPKGEDKENISRLIKLATGHFEFAVQQ 335
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,657,864
Number of extensions: 633110
Number of successful extensions: 1664
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 5
Length of query: 409
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 308
Effective length of database: 8,829,335
Effective search space: 2719435180
Effective search space used: 2719435180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001005858.2| interferon-induced protein with tetratricope... 417 e-117
Alignment gi|NP_034631.1| interferon-induced protein with tetratricopepti... 417 e-116
Alignment gi|NP_032358.1| interferon-induced protein with tetratricopepti... 333 1e-91
Alignment gi|NP_032357.2| interferon-induced protein with tetratricopepti... 234 8e-62
Alignment gi|NP_444447.1| hypothetical protein LOC112419 [Mus musculus]. 229 3e-60
Alignment gi|NP_001095075.1| hypothetical protein LOC667373 isoform 2 [Mu... 219 4e-57
Alignment gi|NP_001103987.1| hypothetical protein LOC667373 isoform 1 [Mu... 219 4e-57
>ref|NP_001005858.2| interferon-induced protein with tetratricopeptide repeats 3-like [Mus
musculus].
Length = 403
Score = 417 bits (1073), Expect = e-117
Identities = 208/373 (55%), Positives = 266/373 (71%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSEVN+ SLE ILPQLKCHFTWNL +E + +EDRVCNQ E LNSE KATMY+LLAYI
Sbjct: 1 MSEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQLEHLNSEEKATMYDLLAYI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL+G++ + EH DQAEIR LVTWGNYAW+YYH+GRLSEAQ YVDKV
Sbjct: 61 KHLDGESKAALECLGQAEDLRKSEHKDQAEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
+QVC+KF+NPYS+ECPEL+CEEGWT LKCG + E+AK+ FEKALEEKP +PE SSG+AI
Sbjct: 121 RQVCQKFANPYSMECPELECEEGWTRLKCG--RNERAKMCFEKALEEKPKDPECSSGMAI 178
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AM+ L KP +Q SVD LK+A+EL+P NQY+KVLLAL L +M KAP
Sbjct: 179 AMFRLEEKPEKQFSVDALKQAMELNPQNQYVKVLLALKLLRMGEEAEGERLIKDALGKAP 238
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
QTDVL+ AA+FY+ KG+LD+AIEL AL ST NN LY + C YR ++QL + G++
Sbjct: 239 NQTDVLQKAAQFYKKKGNLDRAIELLGKALRSTVNNSPLYSLVMCRYREILEQLQNKGDA 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
++S R+ + ELR+ +++ K +++ +PL +YSD + E+ C+Q KE P E
Sbjct: 299 DSSERRQRMAELRRLTMEFMQKTLQRRRSPLNSYSDLIDFPEVERCYQMVISKESPDVEE 358
Query: 1189 QQLHQRSCNSQEY 1227
+ L++R CN QEY
Sbjct: 359 EDLYERYCNLQEY 371
>ref|NP_034631.1| interferon-induced protein with tetratricopeptide repeats 3 [Mus
musculus].
Length = 403
Score = 417 bits (1071), Expect = e-116
Identities = 207/373 (55%), Positives = 266/373 (71%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSEVN+ SLE ILPQLKCHFTWNL +E + +EDRVCNQ E LNSE KATMY+LLAYI
Sbjct: 1 MSEVNRESLEAILPQLKCHFTWNLFREGSMSSHMEDRVCNQVEHLNSEEKATMYDLLAYI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL+G++ + EH DQ+EIR LVTWGNYAW+YYH+GRLSEAQ YVDKV
Sbjct: 61 KHLDGESKAALECLGQAEDLRKSEHNDQSEIRRLVTWGNYAWIYYHMGRLSEAQAYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
+QVC+KF+NPYS+ECPEL+CEEGWT LKCG + E+AK+ FEKALEEKP +PE SSG+AI
Sbjct: 121 RQVCQKFANPYSMECPELECEEGWTRLKCG--RNERAKMCFEKALEEKPKDPECSSGMAI 178
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AM+ L KP +Q SVD LK+A+EL+P NQY+KVLLAL L +M KAP
Sbjct: 179 AMFRLEEKPEKQFSVDALKQAMELNPQNQYLKVLLALKLLRMGEEAEGERLIKDALGKAP 238
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
QTDVL+ AA+FY+ KG+LD+AIEL AL ST NN LY + C YR ++QL + G++
Sbjct: 239 NQTDVLQKAAQFYKKKGNLDRAIELLGKALRSTVNNSPLYSLVMCRYREILEQLQNKGDA 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
++S R+ + ELR+ +++ K +++ +PL +YSD + E+ C+Q KE P E
Sbjct: 299 DSSERRQRMAELRRLTMEFMQKTLQRRRSPLNSYSDLIDFPEVERCYQMVISKESPDVEE 358
Query: 1189 QQLHQRSCNSQEY 1227
+ L++R CN QEY
Sbjct: 359 EDLYERYCNLQEY 371
>ref|NP_032358.1| interferon-induced protein with tetratricopeptide repeats 2 [Mus
musculus].
Length = 470
Score = 333 bits (855), Expect = 1e-91
Identities = 185/378 (48%), Positives = 233/378 (61%), Gaps = 7/378 (1%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MS +K SLE L QLKCHFTWNL E+ + EDRV N+ E NSEFKATM N+LAY+
Sbjct: 1 MSTTSKESLESNLRQLKCHFTWNLIAEDESLDEFEDRVFNKDEFQNSEFKATMCNILAYV 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KH G N FIQQ+H DQ EIRSLVTWGNYAWVYYH+G+ S+AQ Y+DKV
Sbjct: 61 KHCRGLNEAALQCLGEAEGFIQQQHPDQVEIRSLVTWGNYAWVYYHMGQFSKAQAYLDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
KQVC+KFS+PY IE P LDCEEGW LKC Q E+ KV F+KALE+ P NPEF+SG AI
Sbjct: 121 KQVCKKFSSPYRIENPALDCEEGWARLKCTKNQNERVKVCFQKALEKDPKNPEFTSGWAI 180
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
A Y L+ PA+ +D L++AI+LSPDN Y+KVLLAL L ++ K P
Sbjct: 181 ANYRLDDWPARNYCIDSLEQAIQLSPDNTYVKVLLALKLDAVH-KNQAMALVEEALKKDP 239
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
D L AA+FY D D+AI+L ALE PNN Y+++ + CCYR+KV +L+ E
Sbjct: 240 SAIDTLLRAARFYCKVYDTDRAIQLLRKALEKLPNNAYVHYYMGCCYRSKVHHMLNRREM 299
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECH-------QTAFXK 1167
S +R+ +EEL + A +++ KA E Y+ S +L I + + Q K
Sbjct: 300 VFSGDRKKLEELIQLAVNHLRKAEEIKEMLEYSCSFLADLYIIAKKYDEADYYFQKELSK 359
Query: 1168 ELPSTEAQQLHQRSCNSQ 1221
+LP Q LH R N Q
Sbjct: 360 DLPPGPKQLLHLRYGNFQ 377
>ref|NP_032357.2| interferon-induced protein with tetratricopeptide repeats 1 [Mus
musculus].
Length = 463
Score = 234 bits (598), Expect = 8e-62
Identities = 125/306 (40%), Positives = 186/306 (60%), Gaps = 2/306 (0%)
Frame = +1
Query: 145 LPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNGQNXXXXX 324
L QL+CHFTW L E + DLE R+ Q + L+ + M+NLLAY++HL GQ
Sbjct: 14 LLQLRCHFTWKLLFENNDIPDLEVRISEQVQFLDIKNPLGMHNLLAYVRHLKGQQDEALQ 73
Query: 325 XXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNP-- 498
IQ E Q RSL TWGN AW++YH G L+EAQIY+DKV++VC++FS+P
Sbjct: 74 SLKEAEALIQSE---QLSKRSLATWGNCAWLHYHRGSLAEAQIYLDKVEKVCKEFSSPFR 130
Query: 499 YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNGKPA 678
Y +EC E+DCEEGW LLKCGG ++A F KAL+ +P+NPE+++G A+ Y
Sbjct: 131 YRLECAEMDCEEGWALLKCGGGNYKQAMACFAKALKVEPENPEYNTGYAVVAY-RQDLDD 189
Query: 679 QQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAPRQTDVLRSAA 858
S++ L++A+ L+P++ Y+KVLLAL LQ + Q+ V+R AA
Sbjct: 190 NFISLEPLRKAVRLNPEDPYLKVLLALKLQDLGEHVEAEAHIEEALSSTSCQSYVIRYAA 249
Query: 859 KFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGESEASRNREIIE 1038
K++R K +DKA+ L AL+++P++GYL++Q CY+ ++ Q L + R ++ ++
Sbjct: 250 KYFRRKHRVDKALHLLNRALQASPSSGYLHYQKGLCYKQQISQ-LRTSRNRQPRRQDNVQ 308
Query: 1039 ELRKYA 1056
EL + A
Sbjct: 309 ELAQQA 314
>ref|NP_444447.1| hypothetical protein LOC112419 [Mus musculus].
Length = 466
Score = 229 bits (584), Expect = 3e-60
Identities = 140/384 (36%), Positives = 214/384 (55%), Gaps = 13/384 (3%)
Frame = +1
Query: 115 EVNKNSLEKILPQLKCHFTWNLP-KEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIK 291
E +K+ + L +L+CHFTW L K++H+ HDLE ++ ++TE + + M+NLLAY++
Sbjct: 13 ESHKSHIHDSLDELRCHFTWELDIKDKHI-HDLEIKI-SETEFRDPIYSIGMHNLLAYVR 70
Query: 292 HLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVK 471
HL GQ IQ E Q RSL TWGN AW++YH G L+EAQ+Y+DKV+
Sbjct: 71 HLKGQQDEALQSLKEAEALIQSE---QLSKRSLATWGNCAWLHYHRGSLAEAQVYLDKVE 127
Query: 472 QVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLA 645
+VC++FS+P Y +EC E+DCEEGW L KCG + +A FE+AL+ +P+NPE+++G A
Sbjct: 128 KVCKEFSSPFRYRLECAEMDCEEGWALRKCGSQNYTRAMACFERALKVEPENPEYNAGYA 187
Query: 646 IAMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKA 825
Y L+ +S+ LK+A+ + P++ Y+KVLLAL LQ +
Sbjct: 188 DVAYHLDYYDG--NSLQPLKKAVSVKPEDPYLKVLLALKLQDLRKTDEAEKHIKEATLTI 245
Query: 826 PRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGE 1005
Q ++ AKFYR KG +++A+ ALE+ P++ YL+ QI C++ + Q+ A
Sbjct: 246 SSQNNIFGYVAKFYRRKGCVEEALGFLKKALETKPSSPYLHFQIGLCHKTQFFQMKKATS 305
Query: 1006 SEASRNREIIEELRKYAKDYVNKAIEKGLNPLY--AYSDSTELLEIXECHQTA---FXKE 1170
E NR+ ++ A + K +E L P Y AY D E+ + A F +
Sbjct: 306 RE---NRKRADQSCHLAICHFKKTLE--LKPTYDRAYIDLAEVYAKNHQQKEAEDNFQEV 360
Query: 1171 LPSTE-----AQQLHQRSCNSQEY 1227
L + Q++H R N Q+Y
Sbjct: 361 LSMSNLGDYMQQEIHFRYGNFQQY 384
>ref|NP_001095075.1| hypothetical protein LOC667373 isoform 2 [Mus musculus].
Length = 470
Score = 219 bits (557), Expect = 4e-57
Identities = 132/374 (35%), Positives = 204/374 (54%), Gaps = 13/374 (3%)
Frame = +1
Query: 145 LPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNGQNXXXXX 324
L +L+CHFTW L E+ DLE R+ ++TE ++ + M+NLLAY++HL GQ
Sbjct: 23 LVELRCHFTWKLVIEKVDMPDLEVRI-SETEFFDASYSIGMHNLLAYVRHLKGQQEEALQ 81
Query: 325 XXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNP-- 498
IQ E Q R LVTWGN AW++YH G L+EAQ+Y+DKV++VC++FS+P
Sbjct: 82 SLKEAEALIQSE---QLSKRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQ 138
Query: 499 YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNGKPA 678
Y +EC E+DCEEGW LLKCG + + A F KAL+ +P+NPE+++G A+ Y L+
Sbjct: 139 YRLECAEMDCEEGWALLKCGIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLD--HI 196
Query: 679 QQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAPRQTDVLRSAA 858
+S+ L++A+ + P++ Y+KVLLAL LQ ++ + Q V A
Sbjct: 197 DGTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVA 256
Query: 859 KFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGESE-ASRNREII 1035
KFYR KG + +A+E AL+ P + +L+ QI C++ ++ Q+ A + +R+
Sbjct: 257 KFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKRLIQIKKASNMQPRGEDRKRA 316
Query: 1036 EELRKYAKDYVNKAIEKGLNPLYA---------YSDSTELLEIXECHQTAF-XKELPSTE 1185
++ A + + +E L P Y Y + +L E + Q L
Sbjct: 317 DQSIHLAICHFKRTLE--LKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNLEDHI 374
Query: 1186 AQQLHQRSCNSQEY 1227
Q++H R N Q+Y
Sbjct: 375 QQEIHFRYGNFQQY 388
>ref|NP_001103987.1| hypothetical protein LOC667373 isoform 1 [Mus musculus].
Length = 470
Score = 219 bits (557), Expect = 4e-57
Identities = 132/374 (35%), Positives = 204/374 (54%), Gaps = 13/374 (3%)
Frame = +1
Query: 145 LPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNGQNXXXXX 324
L +L+CHFTW L E+ DLE R+ ++TE ++ + M+NLLAY++HL GQ
Sbjct: 23 LVELRCHFTWKLVIEKVDMPDLEVRI-SETEFFDASYSIGMHNLLAYVRHLKGQQEEALQ 81
Query: 325 XXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCEKFSNP-- 498
IQ E Q R LVTWGN AW++YH G L+EAQ+Y+DKV++VC++FS+P
Sbjct: 82 SLKEAEALIQSE---QLSKRRLVTWGNCAWLHYHRGSLAEAQVYLDKVEKVCKEFSSPFQ 138
Query: 499 YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMYFLNGKPA 678
Y +EC E+DCEEGW LLKCG + + A F KAL+ +P+NPE+++G A+ Y L+
Sbjct: 139 YRLECAEMDCEEGWALLKCGIQNYKGAMACFAKALKVEPENPEYNAGYAVVAYRLD--HI 196
Query: 679 QQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAPRQTDVLRSAA 858
+S+ L++A+ + P++ Y+KVLLAL LQ ++ + Q V A
Sbjct: 197 DGTSLQHLQKAVSVKPEDPYLKVLLALKLQDLHKLEEAEKHIEETLPRISSQPYVFGYVA 256
Query: 859 KFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGESE-ASRNREII 1035
KFYR KG + +A+E AL+ P + +L+ QI C++ ++ Q+ A + +R+
Sbjct: 257 KFYRRKGLVKEALEFLGRALQKQPCSTFLHFQIGLCHKKRLIQIKKASNMQPRGEDRKRA 316
Query: 1036 EELRKYAKDYVNKAIEKGLNPLYA---------YSDSTELLEIXECHQTAF-XKELPSTE 1185
++ A + + +E L P Y Y + +L E + Q L
Sbjct: 317 DQSIHLAICHFKRTLE--LKPTYVMAYVTLAEMYIEKNQLKEAEDNFQKLLNMSNLEDHI 374
Query: 1186 AQQLHQRSCNSQEY 1227
Q++H R N Q+Y
Sbjct: 375 QQEIHFRYGNFQQY 388
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 36,634,870
Number of extensions: 876645
Number of successful extensions: 2283
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2260
Number of HSP's successfully gapped: 7
Length of query: 409
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 305
Effective length of database: 12,493,815
Effective search space: 3810613575
Effective search space used: 3810613575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001540.2| interferon-induced protein with tetratricopepti... 532 e-151
Alignment gi|NP_001026853.1| interferon-induced protein with tetratricope... 532 e-151
Alignment gi|NP_001538.4| interferon-induced protein with tetratricopepti... 389 e-108
Alignment gi|NP_001539.3| interferon-induced protein with tetratricopepti... 299 3e-81
Alignment gi|NP_036552.1| interferon-induced protein with tetratricopepti... 296 2e-80
Alignment gi|NP_001010987.1| interferon-induced protein with tetratricope... 291 8e-79
>ref|NP_001540.2| interferon-induced protein with tetratricopeptide repeats 3 [Homo
sapiens].
Length = 490
Score = 532 bits (1371), Expect = e-151
Identities = 269/373 (72%), Positives = 294/373 (78%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSEV KNSLEKILPQLKCHFTWNL KE+ V DLEDRVCNQ E LN+EFKATMYNLLAYI
Sbjct: 1 MSEVTKNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAYI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL+G N IQQEH DQAEIRSLVTWGNYAWVYYHLGRLS+AQIYVDKV
Sbjct: 61 KHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
KQ C+KFSNPYSIE ELDCEEGWT LKCG E+AKV FEKALEEKP+NPEFSSGLAI
Sbjct: 121 KQTCKKFSNPYSIEYSELDCEEGWTQLKCGRN--ERAKVCFEKALEEKPNNPEFSSGLAI 178
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AMY L+ P +Q S D+LK+AIELSPDNQY+KVLL L LQKMN K+P
Sbjct: 179 AMYHLDNHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSP 238
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
QTDVLRSAAKFYR KGDLDKAIELF LESTPNNGYLYHQI CCY+AKV+Q+ + GES
Sbjct: 239 CQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVRQMQNTGES 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
EAS N+E+IE L++YA DY NKA+EKGLNPL AYSD E LE EC+QT F KE+P E
Sbjct: 299 EASGNKEMIEALKQYAMDYSNKALEKGLNPLNAYSDLAEFLE-TECYQTPFNKEVPDAEK 357
Query: 1189 QQLHQRSCNSQEY 1227
QQ HQR CN Q+Y
Sbjct: 358 QQSHQRYCNLQKY 370
>ref|NP_001026853.1| interferon-induced protein with tetratricopeptide repeats 3 [Homo
sapiens].
Length = 490
Score = 532 bits (1371), Expect = e-151
Identities = 269/373 (72%), Positives = 294/373 (78%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSEV KNSLEKILPQLKCHFTWNL KE+ V DLEDRVCNQ E LN+EFKATMYNLLAYI
Sbjct: 1 MSEVTKNSLEKILPQLKCHFTWNLFKEDSVSRDLEDRVCNQIEFLNTEFKATMYNLLAYI 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL+G N IQQEH DQAEIRSLVTWGNYAWVYYHLGRLS+AQIYVDKV
Sbjct: 61 KHLDGNNEAALECLRQAEELIQQEHADQAEIRSLVTWGNYAWVYYHLGRLSDAQIYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
KQ C+KFSNPYSIE ELDCEEGWT LKCG E+AKV FEKALEEKP+NPEFSSGLAI
Sbjct: 121 KQTCKKFSNPYSIEYSELDCEEGWTQLKCGRN--ERAKVCFEKALEEKPNNPEFSSGLAI 178
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXKAP 828
AMY L+ P +Q S D+LK+AIELSPDNQY+KVLL L LQKMN K+P
Sbjct: 179 AMYHLDNHPEKQFSTDVLKQAIELSPDNQYVKVLLGLKLQKMNKEAEGEQFVEEALEKSP 238
Query: 829 RQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAGES 1008
QTDVLRSAAKFYR KGDLDKAIELF LESTPNNGYLYHQI CCY+AKV+Q+ + GES
Sbjct: 239 CQTDVLRSAAKFYRRKGDLDKAIELFQRVLESTPNNGYLYHQIGCCYKAKVRQMQNTGES 298
Query: 1009 EASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTELLEIXECHQTAFXKELPSTEA 1188
EAS N+E+IE L++YA DY NKA+EKGLNPL AYSD E LE EC+QT F KE+P E
Sbjct: 299 EASGNKEMIEALKQYAMDYSNKALEKGLNPLNAYSDLAEFLE-TECYQTPFNKEVPDAEK 357
Query: 1189 QQLHQRSCNSQEY 1227
QQ HQR CN Q+Y
Sbjct: 358 QQSHQRYCNLQKY 370
>ref|NP_001538.4| interferon-induced protein with tetratricopeptide repeats 2 [Homo
sapiens].
Length = 472
Score = 389 bits (998), Expect = e-108
Identities = 219/386 (56%), Positives = 252/386 (65%), Gaps = 13/386 (3%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE NKNSLE L QLKCHFTWNL + E+ D ED+V +TE N EFKATM NLLAY+
Sbjct: 1 MSENNKNSLESSLRQLKCHFTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYL 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL GQN IQQEH DQAEIRSLVTWGNYAWVYYH+GRLS+ QIYVDKV
Sbjct: 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV 120
Query: 469 KQVCEKFSNPYSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAI 648
K VCEKFS+PY IE PELDCEEGWT LKCGG Q E+AKV FEKALE+KP NPEF+SGLAI
Sbjct: 121 KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180
Query: 649 AMYFLNGKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKM----NXXXXXXXXXXXXX 816
A Y L+ P Q+++D L++AI L+PDNQY+KVLLAL L KM
Sbjct: 181 ASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL 240
Query: 817 XKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLD 996
KAP TDVLRSAAKFYR K + DKAIEL ALE PNN YL+ QI CCYRAKV Q+++
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMN 300
Query: 997 AGESEASRNREIIEELRKYAKDYVNKAIEKG---------LNPLYAYSDSTELLEIXECH 1149
E+ R+++ EL +A ++ KA E L L+A +D E E
Sbjct: 301 LRENGMYGKRKLL-ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEDAEYY--F 357
Query: 1150 QTAFXKELPSTEAQQLHQRSCNSQEY 1227
Q F KEL Q LH R N Q Y
Sbjct: 358 QKEFSKELTPVAKQLLHLRYGNFQLY 383
>ref|NP_001539.3| interferon-induced protein with tetratricopeptide repeats 1 isoform 2
[Homo sapiens].
Length = 478
Score = 299 bits (766), Expect = 3e-81
Identities = 156/329 (47%), Positives = 214/329 (65%), Gaps = 8/329 (2%)
Frame = +1
Query: 124 KNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYIKHLNG 303
K+SLE QL+CHFTW L ++ DLE+RV +Q E L++++ ++NLLAY+KHL G
Sbjct: 11 KDSLE----QLRCHFTWELSIDDDEMPDLENRVLDQIEFLDTKYSVGIHNLLAYVKHLKG 66
Query: 304 QNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKVKQVCE 483
QN +Q+EH +QA +RSLVTWGN+AW+YYH+GRL+EAQ Y+DKV+ +C+
Sbjct: 67 QNEEALKSLKEAENLMQEEHDNQANVRSLVTWGNFAWMYYHMGRLAEAQTYLDKVENICK 126
Query: 484 KFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGLAIAMY 657
K SNP Y +ECPE+DCEEGW LLKCGGK E+AK FEK LE P+NPE S+G AI+ Y
Sbjct: 127 KLSNPFRYRMECPEIDCEEGWALLKCGGKNYERAKACFEKVLEVDPENPESSAGYAISAY 186
Query: 658 FLNG-----KPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXXXXXK 822
L+G K + S+ L++A+ L+PDN YIKVLLAL LQ
Sbjct: 187 RLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYIKVLLALKLQDEGQEAEGEKYIEEALAN 246
Query: 823 APRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQLLDAG 1002
QT V R AAKFYR KG +DKA+EL AL+ TP + L+HQI CY+A++ Q+ +A
Sbjct: 247 MSSQTYVFRYAAKFYRRKGSVDKALELLKKALQETPTSVLLHHQIGLCYKAQMIQIKEAT 306
Query: 1003 ESE-ASRNREIIEELRKYAKDYVNKAIEK 1086
+ + +NRE ++++ + A + A+EK
Sbjct: 307 KGQPRGQNREKLDKMIRSAIFHFESAVEK 335
>ref|NP_036552.1| interferon-induced protein with tetratricopeptide repeats 5 [Homo
sapiens].
Length = 482
Score = 296 bits (759), Expect = 2e-80
Identities = 157/343 (45%), Positives = 216/343 (62%), Gaps = 7/343 (2%)
Frame = +1
Query: 109 MSEVNKNSLEKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAYI 288
MSE+ K++L+ IL +L+CHFTWNL KE+ ++ED + Q E L ++ + +YNLLAY+
Sbjct: 1 MSEIRKDTLKAILLELECHFTWNLLKEDIDLFEVEDTIGQQLEFLTTKSRLALYNLLAYV 60
Query: 289 KHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDKV 468
KHL GQN IQQEH+D+ E+RSLVTWGNYAWVYYH+ +L EAQ Y K+
Sbjct: 61 KHLKGQNKDALECLEQAEEIIQQEHSDKEEVRSLVTWGNYAWVYYHMDQLEEAQKYTGKI 120
Query: 469 KQVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSGL 642
VC+K S+P Y +ECPE DCE+GW LLK GGK +KAK FEKALE +PDNPEF+ G
Sbjct: 121 GNVCKKLSSPSNYKLECPETDCEKGWALLKFGGKYYQKAKAAFEKALEVEPDNPEFNIGY 180
Query: 643 AIAMYFLNGKPAQQS----SVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXXXX 810
AI +Y L+ + S S+ L++A+ L+PDN YIKV LAL LQ ++
Sbjct: 181 AITVYRLDDSDREGSVKSFSLGPLRKAVTLNPDNSYIKVFLALKLQDVHAEAEGEKYIEE 240
Query: 811 XXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVKQL 990
+ Q VLR AAKFYR K +KA+EL ALE TP + +L+HQ+ CYRA++ Q+
Sbjct: 241 ILDQISSQPYVLRYAAKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQI 300
Query: 991 LDAGESE-ASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSD 1116
A + +++ ++EL A + A+E+ +AY+D
Sbjct: 301 KKATHNRPKGKDKLKVDELISSAIFHFKAAMERDSMFAFAYTD 343
>ref|NP_001010987.1| interferon-induced protein with tetratricopeptide repeats 1B [Homo
sapiens].
Length = 474
Score = 291 bits (745), Expect = 8e-79
Identities = 158/348 (45%), Positives = 213/348 (61%), Gaps = 9/348 (2%)
Frame = +1
Query: 109 MSEVNKNSL-EKILPQLKCHFTWNLPKEEHVWHDLEDRVCNQTELLNSEFKATMYNLLAY 285
MSE + L E L QL+CHFTW L E DLE+R+ + + L++++ ++NLLAY
Sbjct: 1 MSEESDGKLIEDSLIQLRCHFTWKLLIEAPEIPDLENRIWEEIQFLDTKYNVGIHNLLAY 60
Query: 286 IKHLNGQNXXXXXXXXXXXXFIQQEHTDQAEIRSLVTWGNYAWVYYHLGRLSEAQIYVDK 465
+KHL GQN IQ+EH +QA+IRSLVTWGN+AWVYYH+GRL+EAQ Y+DK
Sbjct: 61 VKHLKGQNEEALVSLKKAEDLIQKEHANQADIRSLVTWGNFAWVYYHMGRLAEAQTYLDK 120
Query: 466 VKQVCEKFSNP--YSIECPELDCEEGWTLLKCGGKQIEKAKVYFEKALEEKPDNPEFSSG 639
V+ C+KF+NP Y +ECPE+DCEEGW L KCGGK E+AK FEKALE P+NPEF++G
Sbjct: 121 VENTCKKFANPSRYRMECPEVDCEEGWALAKCGGKNYERAKTCFEKALEGNPENPEFNTG 180
Query: 640 LAIAMYFLN-----GKPAQQSSVDILKEAIELSPDNQYIKVLLALTLQKMNXXXXXXXXX 804
AI +Y L+ + S+ +LK A+ L+PD+ YI+VLLAL LQ
Sbjct: 181 YAITVYRLDKFNTASGRNKAFSLHVLKRAVRLNPDDVYIRVLLALKLQDEGQEAEGEKYI 240
Query: 805 XXXXXKAPRQTDVLRSAAKFYRVKGDLDKAIELFLTALESTPNNGYLYHQIACCYRAKVK 984
Q V + AAKFYR KG +DKA+EL ALE+TP + +L+HQ+ CYRA++
Sbjct: 241 EEALTSISSQAYVFQYAAKFYRRKGSVDKALELLKMALETTPTSAFLHHQMGLCYRAQMI 300
Query: 985 QLLDAGE-SEASRNREIIEELRKYAKDYVNKAIEKGLNPLYAYSDSTE 1125
Q+ +A ++RE ++ L + A K I AY D E
Sbjct: 301 QIKEATNWQPRGQDRETVDRLVQLAICKFEKTIMLKRTFEMAYVDLAE 348
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 42,795,667
Number of extensions: 1028204
Number of successful extensions: 2682
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2667
Number of HSP's successfully gapped: 6
Length of query: 409
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 304
Effective length of database: 14,835,944
Effective search space: 4510126976
Effective search space used: 4510126976
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008636
(1228 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr14 2202 0.0
>Sscrofa_Chr14
|| Length = 153851969
Score = 2202 bits (1111), Expect = 0.0
Identities = 1115/1117 (99%)
Strand = Plus / Plus
Query: 112 agtgaggtcaacaagaattctctggagaagatccttccacagctgaaatgccatttcaca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209344 agtgaggtcaacaagaattctctggagaagatccttccacagctgaaatgccatttcaca 110209403
Query: 172 tggaacttacctaaggaagaacatgtctggcatgatctagaagacagagtgtgtaaccag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209404 tggaacttacctaaggaagaacatgtctggcatgatctagaagacagagtgtgtaaccag 110209463
Query: 232 actgaacttttaaactctgagttcaaagcgacaatgtacaacttgttggcttacataaaa 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209464 actgaacttttaaactctgagttcaaagcgacaatgtacaacttgttggcttacataaaa 110209523
Query: 292 catttaaatggtcaaaatgaggctgccctggaatacttacagcaagctgaagagtttatc 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209524 catttaaatggtcaaaatgaggctgccctggaatacttacagcaagctgaagagtttatc 110209583
Query: 352 cagcaagaacacactgaccaggcagaaatcagaagcctggttacctggggaaactatgcc 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209584 cagcaagaacacactgaccaggcagaaatcagaagcctggttacctggggaaactatgcc 110209643
Query: 412 tgggtctattatcacctgggaagactctcagaagctcaaatttatgtagacaaggtgaaa 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209644 tgggtctattatcacctgggaagactctcagaagctcaaatttatgtagacaaggtgaaa 110209703
Query: 472 caagtatgtgagaagttctcaaatccttacagtattgagtgtccggagcttgactgtgaa 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209704 caagtatgtgagaagttctcaaatccttacagtattgagtgtccggagcttgactgtgaa 110209763
Query: 532 gaaggatggacactgctaaagtgtggaggaaaacaaattgaaaaggcaaaggtgtatttt 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209764 gaaggatggacactgctaaagtgtggaggaaaacaaattgaaaaggcaaaggtgtatttt 110209823
Query: 592 gagaaggctctggaagagaaacccgacaacccagaattctcctctggactggccatcgcg 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209824 gagaaggctctggaagagaaacccgacaacccagaattctcctctggactggccatcgcg 110209883
Query: 652 atgtactttctgaatggcaaaccagcgcagcagtcctccgtggatattctcaaggaggcc 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209884 atgtactttctgaatggcaaaccagcgcagcagtcctccgtggatattctcaaggaggcc 110209943
Query: 712 attgagttgagccctgacaatcagtatatcaaagttctcttggccctgacattgcagaag 771
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110209944 attgagttgagccctgacaatcagtatatcaaagttctcttggccctgacattgcagaag 110210003
Query: 772 atgaatgaagaagctgaaggggaagagttggttgtagaggccctggaaaaagctcctcgc 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210004 atgaatgaagaagctgaaggggaagagttggttgtagaggccctggaaaaagctcctcgc 110210063
Query: 832 caaacagatgtcctccgcagtgcagccaaattttaccgagtaaagggtgatctagacaaa 891
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210064 caaacagatgtcctccgcagtgcagccaaattttaccgagtaaagggtgatctagacaaa 110210123
Query: 892 gctattgaactatttctaacggcactggaatccacaccaaacaatggctacctctatcac 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210124 gctattgaactatttctaacggcactggaatccacaccaaacaatggctacctctatcac 110210183
Query: 952 cagattgcatgctgctatagggcaaaagtcaaacaacttctggatgcaggagaatctgaa 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210184 cagattgcatgctgctatagggcaaaagtcaaacaacttctggatgcaggagaatctgaa 110210243
Query: 1012 gctagcaggaatagagagataattgaagaactacggaaatatgccaaggactatgtgaat 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210244 gctagcaggaatagagagataattgaagaactacggaaatatgccaaggactatgtgaat 110210303
Query: 1072 aaagctattgaaaagggactaaatcctctgtatgcatattctgatagcactgagctcctg 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110210304 aaagctattgaaaagggactaaatcctctgtatgcatattctgatagcactgagctcctg 110210363
Query: 1132 gaaatangagaatgtcatcagacagctttcantaaggagctccctagcactgaggcgcaa 1191
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 110210364 gaaataggagaatgtcatcagacagctttcagtaaggagctccctagcactgaggcgcaa 110210423
Query: 1192 caacttcatcagcgctcttgcaactctcaggagtatc 1228
|||||||||||||||||||||||||||||||||||||
Sbjct: 110210424 caacttcatcagcgctcttgcaactctcaggagtatc 110210460
Score = 276 bits (139), Expect = 3e-71
Identities = 292/343 (85%)
Strand = Plus / Plus
Query: 308 atgaggctgccctggaatacttacagcaagctgaagagtttatccagcaagaacacactg 367
||||||| |||||||||| ||||| ||||||||||||||| |||| || ||||||| ||
Sbjct: 110187408 atgaggccgccctggaatgcttacggcaagctgaagagttcatccggcgagaacacgcta 110187467
Query: 368 accaggcagaaatcagaagcctggttacctggggaaactatgcctgggtctattatcacc 427
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 110187468 gccaggcagaaatcagaagcctggtcacctggggaaactatgcctgggtctactatcacc 110187527
Query: 428 tgggaagactctcagaagctcaaatttatgtagacaaggtgaaacaagtatgtgagaagt 487
|||||||||| |||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct: 110187528 tgggaagacttgcagaagctcagatttatgtagacaaggtgaaacaagtttgcaagaagt 110187587
Query: 488 tctcaaatccttacagtattgagtgtccggagcttgactgtgaagaaggatggacactgc 547
| || | || ||||| |||||| | | ||| | |||||||| ||||| ||||| | ||
Sbjct: 110187588 tttccagcccctacagaattgagaggtctgagatggactgtgaggaagggtggacccggc 110187647
Query: 548 taaagtgtggaggaaaacaaattgaaaaggcaaaggtgtattttgagaaggctctggaag 607
| |||||||||||||| |||| ||||| ||||||| ||| |||| |||||||||||| |
Sbjct: 110187648 tcaagtgtggaggaaaccaaaatgaaagggcaaagatgtgttttcagaaggctctggcaa 110187707
Query: 608 agaaacccgacaacccagaattctcctctggactggccatcgc 650
||| || | |||||||| || ||||||| |||||||||||
Sbjct: 110187708 agagccctaaggacccagaagtcacctctggtctggccatcgc 110187750
Score = 216 bits (109), Expect = 2e-53
Identities = 112/113 (99%)
Strand = Plus / Plus
Query: 1 ccccatttcccttttatatagctccttcctatttacttgaggcacgtttctgaagggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110200951 ccccatttcccttttatatagctccttcctatttacttgaggcacgtttctgaagggcaa 110201010
Query: 61 atcagcttggaccccaactttcagaacagcagagaacagaccgccatcatgag 113
|||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 110201011 atcagcttggaccccagctttcagaacagcagagaacagaccgccatcatgag 110201063
Score = 60.0 bits (30), Expect = 3e-06
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 394 acctggggaaactatgcctgggtctattatcacctggg 431
|||||||||||||||| ||||||||| |||||||||||
Sbjct: 110176321 acctggggaaactatgtctgggtctactatcacctggg 110176358
Score = 60.0 bits (30), Expect = 3e-06
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 337 gctgaagagtttatccagcaagaacacactgaccaggcagaaatcagaagcctggttacc 396
|||||||| || | ||| |||||||| |||||||| |||| | ||||| |||||||||
Sbjct: 110234009 gctgaagatttaacccaacaagaacatactgaccaatcagaggtgagaaggctggttacc 110234068
Query: 397 tggggaaactatgcctgg 414
||||| ||||||||||||
Sbjct: 110234069 tggggcaactatgcctgg 110234086
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 38,656,637
Number of extensions: 249
Number of successful extensions: 249
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 248
Number of HSP's successfully gapped: 5
Length of query: 1228
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1207
Effective length of database: 2,808,413,156
Effective search space: 3389754679292
Effective search space used: 3389754679292
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)