Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093811.1| hypothetical protein LOC511599 [Bos taurus]. 365 e-101
>ref|NP_001093811.1| hypothetical protein LOC511599 [Bos taurus].
Length = 263
Score = 365 bits (936), Expect = e-101
Identities = 182/243 (74%), Positives = 200/243 (82%)
Frame = +2
Query: 332 GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
GMG+ RGPPRAVCLHLAGEVLAVARGLKPALLYDC+ AGA E+QSYLE+L+GLGFPT+GL
Sbjct: 18 GMGKRRGPPRAVCLHLAGEVLAVARGLKPALLYDCSSAGAPEIQSYLEKLRGLGFPTQGL 77
Query: 512 HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
H+LEI E+SLIV PE V +HLEQVLLG++AFVDVS +QP+P+VCS EII
Sbjct: 78 HVLEIAENSLIVHPEYVRRHLEQVLLGSIAFVDVSGSQPYPAVCSLDQLQDFKALVVEII 137
Query: 692 AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
HLQGL+ D WNLCTVFGILLGYPVPYTFH +QG DNCLA TPLRVF
Sbjct: 138 THLQGLQRDRSLAVSCSRLCSSAWNLCTVFGILLGYPVPYTFHENQGEDNCLAQTPLRVF 197
Query: 872 TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
TARISW QPPVLLYSFSVPESLF +LRDILNTWEKDLRTRCRTQNDFADLSISSE+VT
Sbjct: 198 TARISWLCCQPPVLLYSFSVPESLFLSLRDILNTWEKDLRTRCRTQNDFADLSISSEIVT 257
Query: 1052 LPA 1060
LPA
Sbjct: 258 LPA 260
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,957,669
Number of extensions: 1315376
Number of successful extensions: 4304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4296
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,689,326
Number of extensions: 1346811
Number of successful extensions: 4261
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4238
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,421,834
Number of extensions: 851957
Number of successful extensions: 2760
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2748
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851391.1| hypothetical protein LOC319266 [Mus musculus]. 324 8e-89
Alignment gi|NP_001153832.1| hypothetical protein LOC319266 [Mus musculus]. 324 8e-89
Alignment gi|NP_001153831.1| hypothetical protein LOC319266 [Mus musculus]. 324 8e-89
>ref|NP_851391.1| hypothetical protein LOC319266 [Mus musculus].
Length = 263
Score = 324 bits (830), Expect = 8e-89
Identities = 163/243 (67%), Positives = 182/243 (74%)
Frame = +2
Query: 332 GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG LQSYLE+LQGLGF GL
Sbjct: 18 GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77
Query: 512 HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
HILEIGE++ IV PE CQHLEQ LLG VAFVDVS +QPHPSV S ++I
Sbjct: 78 HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137
Query: 692 AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
+GLK D DWNLCTVFGILLGYPV YTF +++ DNCL +TPLRVF
Sbjct: 138 TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197
Query: 872 TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
TARISW QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198 TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257
Query: 1052 LPA 1060
LPA
Sbjct: 258 LPA 260
>ref|NP_001153832.1| hypothetical protein LOC319266 [Mus musculus].
Length = 263
Score = 324 bits (830), Expect = 8e-89
Identities = 163/243 (67%), Positives = 182/243 (74%)
Frame = +2
Query: 332 GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG LQSYLE+LQGLGF GL
Sbjct: 18 GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77
Query: 512 HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
HILEIGE++ IV PE CQHLEQ LLG VAFVDVS +QPHPSV S ++I
Sbjct: 78 HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137
Query: 692 AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
+GLK D DWNLCTVFGILLGYPV YTF +++ DNCL +TPLRVF
Sbjct: 138 TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197
Query: 872 TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
TARISW QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198 TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257
Query: 1052 LPA 1060
LPA
Sbjct: 258 LPA 260
>ref|NP_001153831.1| hypothetical protein LOC319266 [Mus musculus].
Length = 263
Score = 324 bits (830), Expect = 8e-89
Identities = 163/243 (67%), Positives = 182/243 (74%)
Frame = +2
Query: 332 GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG LQSYLE+LQGLGF GL
Sbjct: 18 GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77
Query: 512 HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
HILEIGE++ IV PE CQHLEQ LLG VAFVDVS +QPHPSV S ++I
Sbjct: 78 HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137
Query: 692 AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
+GLK D DWNLCTVFGILLGYPV YTF +++ DNCL +TPLRVF
Sbjct: 138 TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197
Query: 872 TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
TARISW QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198 TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257
Query: 1052 LPA 1060
LPA
Sbjct: 258 LPA 260
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,772,515
Number of extensions: 1096343
Number of successful extensions: 3356
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3347
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689698.1| hypothetical protein LOC148304 [Homo sapiens]. 379 e-105
>ref|NP_689698.1| hypothetical protein LOC148304 [Homo sapiens].
Length = 269
Score = 379 bits (973), Expect = e-105
Identities = 187/243 (76%), Positives = 201/243 (82%)
Frame = +2
Query: 332 GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
GMG+ R PP+A+CLHLAGEVLAVARGLKPA+LYDCNCAGA+ELQSYLE+L+GLGF T GL
Sbjct: 24 GMGKRRSPPQAICLHLAGEVLAVARGLKPAVLYDCNCAGASELQSYLEELKGLGFLTFGL 83
Query: 512 HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
HILEIGE+SLIV PE VCQHLEQVLLG +AFVDVSS Q HPSVCS EII
Sbjct: 84 HILEIGENSLIVSPEHVCQHLEQVLLGTIAFVDVSSCQRHPSVCSLDQLQDLKALVAEII 143
Query: 692 AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
HLQGL+ D DWNLCTVFGILLGYPVPYTFH++QG DNCLALTPLRVF
Sbjct: 144 THLQGLQRDLSLAVSYSRLHSSDWNLCTVFGILLGYPVPYTFHLNQGDDNCLALTPLRVF 203
Query: 872 TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
TARISW QPP+LLYSFSVPESLFP LRDILNTWEKDLRTR RTQNDFADLSISSE+VT
Sbjct: 204 TARISWLLGQPPILLYSFSVPESLFPGLRDILNTWEKDLRTRFRTQNDFADLSISSEIVT 263
Query: 1052 LPA 1060
LPA
Sbjct: 264 LPA 266
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,776,531
Number of extensions: 1316135
Number of successful extensions: 4163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4154
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008641
(1062 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 1719 0.0
>Sscrofa_Chr09
|| Length = 153670197
Score = 1719 bits (867), Expect = 0.0
Identities = 876/879 (99%)
Strand = Plus / Plus
Query: 184 aggcccttcttcaagtgtctggagctcagagatgcagcccaggggagggaactgtgacta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264553 aggcccttcttcaagtgtctggagctcagagatgcagcccaggggagggaactgtgacta 146264612
Query: 244 gttaaggaggccatgcttactgttgcttccagagtccatgtcaacactgagtcttcagct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264613 gttaaggaggccatgcttactgttgcttccagagtccatgtcaacactgagtcttcagct 146264672
Query: 304 gctggtggcagctgctcagcagaccctgggcatggggaggagccggggcccaccccgagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264673 gctggtggcagctgctcagcagaccctgggcatggggaggagccggggcccaccccgagc 146264732
Query: 364 cgtgtgccttcatctagccggagaggtgctggctgtggccaggggacttaagccagctct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264733 cgtgtgccttcatctagccggagaggtgctggctgtggccaggggacttaagccagctct 146264792
Query: 424 gctctatgattgcaactgtgcaggggcagcagagctccagagctatctggagcagctgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264793 gctctatgattgcaactgtgcaggggcagcagagctccagagctatctggagcagctgca 146264852
Query: 484 gggcctgggcttcccgacccgggggcttcacattcttgagattggagaagacagcctgat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264853 gggcctgggcttcccgacccgggggcttcacattcttgagattggagaagacagcctgat 146264912
Query: 544 tgtctgtcctgagcgtgtgtgtcagcacttggagcaggtgctgcttggtgccgtagcctt 603
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 146264913 tgtctgtcctgagcgtgtgtgtcagcacttggaacaggtgctgcttggtgccgtagcctt 146264972
Query: 604 tgtggatgtttccagcgctcagcctcacccttccgtctgctccctggaccagcttcagga 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264973 tgtggatgtttccagcgctcagcctcacccttccgtctgctccctggaccagcttcagga 146265032
Query: 664 cttgaaggccctgctggctgagatcatcgctcatttgcagggactgaagacggacctgtc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265033 cttgaaggccctgctggctgagatcatcgctcatttgcagggactgaagacggacctgtc 146265092
Query: 724 cctggcagtctccagcagcaggctctgttcctcagactggaatctctgtactgtgtttgg 783
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 146265093 cctggcagtctccagcagcaggctccgttcctcagactggaatctctgtactgtgtttgg 146265152
Query: 784 gatcctcctgggctatcctgtcccctatacctttcacgtgagccagggaggtgacaattg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265153 gatcctcctgggctatcctgtcccctatacctttcacgtgagccagggaggtgacaattg 146265212
Query: 844 cttagccctgactccactacgggtattcactgcccggatctcttggcgacacagtcaacc 903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 146265213 cttagccctgactccactacgggtattcactgcccggatctcttggcgacaccgtcaacc 146265272
Query: 904 accagtcttgctctattcctttagcgtcccagagagcttgttcccggccctgagggacat 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265273 accagtcttgctctattcctttagcgtcccagagagcttgttcccggccctgagggacat 146265332
Query: 964 tctaaatacttgggagaaggaccttagaactcgatgtaggactcagaatgactttgctga 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265333 tctaaatacttgggagaaggaccttagaactcgatgtaggactcagaatgactttgctga 146265392
Query: 1024 cctcagcatctcctccgaggtggtcaccctgcctgctgt 1062
|||||||||||||||||||||||||||||||||||||||
Sbjct: 146265393 cctcagcatctcctccgaggtggtcaccctgcctgctgt 146265431
Score = 369 bits (186), Expect = 2e-99
Identities = 186/186 (100%)
Strand = Plus / Plus
Query: 1 acttctagcttcgcggcggagcacagggtctcgcggccttccgggcagcgggcaggaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263738 acttctagcttcgcggcggagcacagggtctcgcggccttccgggcagcgggcaggaaac 146263797
Query: 61 tggaaggggttcctgagcccgcgaatctgcaggggaagtagaaggacgtctgtgtgtgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263798 tggaaggggttcctgagcccgcgaatctgcaggggaagtagaaggacgtctgtgtgtgca 146263857
Query: 121 agggagacctctgcctcatttactaaatccctgtactgtgcccaggaaagggcgtggggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263858 agggagacctctgcctcatttactaaatccctgtactgtgcccaggaaagggcgtggggg 146263917
Query: 181 ttgagg 186
||||||
Sbjct: 146263918 ttgagg 146263923
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,901,756
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 2
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)