Animal-Genome cDNA 20110601C-008641


Search to RefSeqBP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: RefSeq49_BP.fasta 
           33,088 sequences; 17,681,374 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001093811.1| hypothetical protein LOC511599 [Bos taurus].      365   e-101

>ref|NP_001093811.1| hypothetical protein LOC511599 [Bos taurus].
          Length = 263

 Score =  365 bits (936), Expect = e-101
 Identities = 182/243 (74%), Positives = 200/243 (82%)
 Frame = +2

Query: 332  GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
            GMG+ RGPPRAVCLHLAGEVLAVARGLKPALLYDC+ AGA E+QSYLE+L+GLGFPT+GL
Sbjct: 18   GMGKRRGPPRAVCLHLAGEVLAVARGLKPALLYDCSSAGAPEIQSYLEKLRGLGFPTQGL 77

Query: 512  HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
            H+LEI E+SLIV PE V +HLEQVLLG++AFVDVS +QP+P+VCS            EII
Sbjct: 78   HVLEIAENSLIVHPEYVRRHLEQVLLGSIAFVDVSGSQPYPAVCSLDQLQDFKALVVEII 137

Query: 692  AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
             HLQGL+ D              WNLCTVFGILLGYPVPYTFH +QG DNCLA TPLRVF
Sbjct: 138  THLQGLQRDRSLAVSCSRLCSSAWNLCTVFGILLGYPVPYTFHENQGEDNCLAQTPLRVF 197

Query: 872  TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
            TARISW   QPPVLLYSFSVPESLF +LRDILNTWEKDLRTRCRTQNDFADLSISSE+VT
Sbjct: 198  TARISWLCCQPPVLLYSFSVPESLFLSLRDILNTWEKDLRTRCRTQNDFADLSISSEIVT 257

Query: 1052 LPA 1060
            LPA
Sbjct: 258  LPA 260


  Database: RefSeq49_BP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 17,681,374
  Number of sequences in database:  33,088
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,957,669
Number of extensions: 1315376
Number of successful extensions: 4304
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4296
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 251
Effective length of database: 14,273,310
Effective search space: 3582600810
Effective search space used: 3582600810
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqCP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: RefSeq49_CP.fasta 
           33,336 sequences; 18,874,504 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_CP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,874,504
  Number of sequences in database:  33,336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,689,326
Number of extensions: 1346811
Number of successful extensions: 4261
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4238
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 250
Effective length of database: 15,407,560
Effective search space: 3851890000
Effective search space used: 3851890000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to RefSeqSP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: RefSeq49_SP.fasta 
           24,897 sequences; 11,343,932 total letters

Searching..................................................done

 ***** No hits found ******


  Database: RefSeq49_SP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 11,343,932
  Number of sequences in database:  24,897
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,421,834
Number of extensions: 851957
Number of successful extensions: 2760
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 2748
Number of HSP's successfully gapped: 0
Length of query: 354
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 254
Effective length of database: 8,854,232
Effective search space: 2248974928
Effective search space used: 2248974928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqMP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: RefSeq49_MP.fasta 
           30,036 sequences; 15,617,559 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_851391.1| hypothetical protein LOC319266 [Mus musculus].       324   8e-89
Alignment   gi|NP_001153832.1| hypothetical protein LOC319266 [Mus musculus].    324   8e-89
Alignment   gi|NP_001153831.1| hypothetical protein LOC319266 [Mus musculus].    324   8e-89

>ref|NP_851391.1| hypothetical protein LOC319266 [Mus musculus].
          Length = 263

 Score =  324 bits (830), Expect = 8e-89
 Identities = 163/243 (67%), Positives = 182/243 (74%)
 Frame = +2

Query: 332  GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
            GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG   LQSYLE+LQGLGF   GL
Sbjct: 18   GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77

Query: 512  HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
            HILEIGE++ IV PE  CQHLEQ LLG VAFVDVS +QPHPSV S            ++I
Sbjct: 78   HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137

Query: 692  AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
               +GLK D             DWNLCTVFGILLGYPV YTF +++  DNCL +TPLRVF
Sbjct: 138  TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197

Query: 872  TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
            TARISW   QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198  TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257

Query: 1052 LPA 1060
            LPA
Sbjct: 258  LPA 260


>ref|NP_001153832.1| hypothetical protein LOC319266 [Mus musculus].
          Length = 263

 Score =  324 bits (830), Expect = 8e-89
 Identities = 163/243 (67%), Positives = 182/243 (74%)
 Frame = +2

Query: 332  GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
            GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG   LQSYLE+LQGLGF   GL
Sbjct: 18   GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77

Query: 512  HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
            HILEIGE++ IV PE  CQHLEQ LLG VAFVDVS +QPHPSV S            ++I
Sbjct: 78   HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137

Query: 692  AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
               +GLK D             DWNLCTVFGILLGYPV YTF +++  DNCL +TPLRVF
Sbjct: 138  TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197

Query: 872  TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
            TARISW   QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198  TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257

Query: 1052 LPA 1060
            LPA
Sbjct: 258  LPA 260


>ref|NP_001153831.1| hypothetical protein LOC319266 [Mus musculus].
          Length = 263

 Score =  324 bits (830), Expect = 8e-89
 Identities = 163/243 (67%), Positives = 182/243 (74%)
 Frame = +2

Query: 332  GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
            GMG+ + PPRA CLHLAGEVLAVARGLKPA+LYDCN AG   LQSYLE+LQGLGF   GL
Sbjct: 18   GMGKRKCPPRATCLHLAGEVLAVARGLKPAVLYDCNSAGVLALQSYLEELQGLGFLEPGL 77

Query: 512  HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
            HILEIGE++ IV PE  CQHLEQ LLG VAFVDVS +QPHPSV S            ++I
Sbjct: 78   HILEIGENNFIVSPEYACQHLEQTLLGTVAFVDVSRSQPHPSVRSVDQLPDLKSLIADVI 137

Query: 692  AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
               +GLK D             DWNLCTVFGILLGYPV YTF +++  DNCL +TPLRVF
Sbjct: 138  TRFRGLKKDVSQGVSYTRLHSSDWNLCTVFGILLGYPVSYTFDLNREDDNCLTMTPLRVF 197

Query: 872  TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
            TARISW   QP +LLYSFSVPESLFPAL++ L+ WEK+LRTR R QN FADLSISSEVVT
Sbjct: 198  TARISWLPGQPSILLYSFSVPESLFPALKNFLSAWEKELRTRFRAQNAFADLSISSEVVT 257

Query: 1052 LPA 1060
            LPA
Sbjct: 258  LPA 260


  Database: RefSeq49_MP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 15,617,559
  Number of sequences in database:  30,036
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,772,515
Number of extensions: 1096343
Number of successful extensions: 3356
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3347
Number of HSP's successfully gapped: 3
Length of query: 354
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 252
Effective length of database: 12,553,887
Effective search space: 3163579524
Effective search space used: 3163579524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)

Search to RefSeqHP_Rel49

BLASTX 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: RefSeq49_HP.fasta 
           32,964 sequences; 18,297,164 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_689698.1| hypothetical protein LOC148304 [Homo sapiens].       379   e-105

>ref|NP_689698.1| hypothetical protein LOC148304 [Homo sapiens].
          Length = 269

 Score =  379 bits (973), Expect = e-105
 Identities = 187/243 (76%), Positives = 201/243 (82%)
 Frame = +2

Query: 332  GMGRSRGPPRAVCLHLAGEVLAVARGLKPALLYDCNCAGAAELQSYLEQLQGLGFPTRGL 511
            GMG+ R PP+A+CLHLAGEVLAVARGLKPA+LYDCNCAGA+ELQSYLE+L+GLGF T GL
Sbjct: 24   GMGKRRSPPQAICLHLAGEVLAVARGLKPAVLYDCNCAGASELQSYLEELKGLGFLTFGL 83

Query: 512  HILEIGEDSLIVCPERVCQHLEQVLLGAVAFVDVSSAQPHPSVCSXXXXXXXXXXXXEII 691
            HILEIGE+SLIV PE VCQHLEQVLLG +AFVDVSS Q HPSVCS            EII
Sbjct: 84   HILEIGENSLIVSPEHVCQHLEQVLLGTIAFVDVSSCQRHPSVCSLDQLQDLKALVAEII 143

Query: 692  AHLQGLKTDXXXXXXXXXXXXXDWNLCTVFGILLGYPVPYTFHVSQGGDNCLALTPLRVF 871
             HLQGL+ D             DWNLCTVFGILLGYPVPYTFH++QG DNCLALTPLRVF
Sbjct: 144  THLQGLQRDLSLAVSYSRLHSSDWNLCTVFGILLGYPVPYTFHLNQGDDNCLALTPLRVF 203

Query: 872  TARISWRHSQPPVLLYSFSVPESLFPALRDILNTWEKDLRTRCRTQNDFADLSISSEVVT 1051
            TARISW   QPP+LLYSFSVPESLFP LRDILNTWEKDLRTR RTQNDFADLSISSE+VT
Sbjct: 204  TARISWLLGQPPILLYSFSVPESLFPGLRDILNTWEKDLRTRFRTQNDFADLSISSEIVT 263

Query: 1052 LPA 1060
            LPA
Sbjct: 264  LPA 266


  Database: RefSeq49_HP.fasta
    Posted date:  Oct 17, 2011  1:42 PM
  Number of letters in database: 18,297,164
  Number of sequences in database:  32,964
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,776,531
Number of extensions: 1316135
Number of successful extensions: 4163
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4154
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 250
Effective length of database: 14,868,908
Effective search space: 3717227000
Effective search space used: 3717227000
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)

Search to Sscrofa10_2

BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20110601C-008641
         (1062 letters)

Database: Sscrofa_10.2.fasta 
           4582 sequences; 2,808,509,378 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Sscrofa_Chr09                                                        1719   0.0  

>Sscrofa_Chr09 
||          Length = 153670197

 Score = 1719 bits (867), Expect = 0.0
 Identities = 876/879 (99%)
 Strand = Plus / Plus

                                                                             
Query: 184       aggcccttcttcaagtgtctggagctcagagatgcagcccaggggagggaactgtgacta 243
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264553 aggcccttcttcaagtgtctggagctcagagatgcagcccaggggagggaactgtgacta 146264612

                                                                             
Query: 244       gttaaggaggccatgcttactgttgcttccagagtccatgtcaacactgagtcttcagct 303
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264613 gttaaggaggccatgcttactgttgcttccagagtccatgtcaacactgagtcttcagct 146264672

                                                                             
Query: 304       gctggtggcagctgctcagcagaccctgggcatggggaggagccggggcccaccccgagc 363
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264673 gctggtggcagctgctcagcagaccctgggcatggggaggagccggggcccaccccgagc 146264732

                                                                             
Query: 364       cgtgtgccttcatctagccggagaggtgctggctgtggccaggggacttaagccagctct 423
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264733 cgtgtgccttcatctagccggagaggtgctggctgtggccaggggacttaagccagctct 146264792

                                                                             
Query: 424       gctctatgattgcaactgtgcaggggcagcagagctccagagctatctggagcagctgca 483
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264793 gctctatgattgcaactgtgcaggggcagcagagctccagagctatctggagcagctgca 146264852

                                                                             
Query: 484       gggcctgggcttcccgacccgggggcttcacattcttgagattggagaagacagcctgat 543
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264853 gggcctgggcttcccgacccgggggcttcacattcttgagattggagaagacagcctgat 146264912

                                                                             
Query: 544       tgtctgtcctgagcgtgtgtgtcagcacttggagcaggtgctgcttggtgccgtagcctt 603
                 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 146264913 tgtctgtcctgagcgtgtgtgtcagcacttggaacaggtgctgcttggtgccgtagcctt 146264972

                                                                             
Query: 604       tgtggatgtttccagcgctcagcctcacccttccgtctgctccctggaccagcttcagga 663
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146264973 tgtggatgtttccagcgctcagcctcacccttccgtctgctccctggaccagcttcagga 146265032

                                                                             
Query: 664       cttgaaggccctgctggctgagatcatcgctcatttgcagggactgaagacggacctgtc 723
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265033 cttgaaggccctgctggctgagatcatcgctcatttgcagggactgaagacggacctgtc 146265092

                                                                             
Query: 724       cctggcagtctccagcagcaggctctgttcctcagactggaatctctgtactgtgtttgg 783
                 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 146265093 cctggcagtctccagcagcaggctccgttcctcagactggaatctctgtactgtgtttgg 146265152

                                                                             
Query: 784       gatcctcctgggctatcctgtcccctatacctttcacgtgagccagggaggtgacaattg 843
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265153 gatcctcctgggctatcctgtcccctatacctttcacgtgagccagggaggtgacaattg 146265212

                                                                             
Query: 844       cttagccctgactccactacgggtattcactgcccggatctcttggcgacacagtcaacc 903
                 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 146265213 cttagccctgactccactacgggtattcactgcccggatctcttggcgacaccgtcaacc 146265272

                                                                             
Query: 904       accagtcttgctctattcctttagcgtcccagagagcttgttcccggccctgagggacat 963
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265273 accagtcttgctctattcctttagcgtcccagagagcttgttcccggccctgagggacat 146265332

                                                                             
Query: 964       tctaaatacttgggagaaggaccttagaactcgatgtaggactcagaatgactttgctga 1023
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146265333 tctaaatacttgggagaaggaccttagaactcgatgtaggactcagaatgactttgctga 146265392

                                                        
Query: 1024      cctcagcatctcctccgaggtggtcaccctgcctgctgt 1062
                 |||||||||||||||||||||||||||||||||||||||
Sbjct: 146265393 cctcagcatctcctccgaggtggtcaccctgcctgctgt 146265431



 Score =  369 bits (186), Expect = 2e-99
 Identities = 186/186 (100%)
 Strand = Plus / Plus

                                                                             
Query: 1         acttctagcttcgcggcggagcacagggtctcgcggccttccgggcagcgggcaggaaac 60
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263738 acttctagcttcgcggcggagcacagggtctcgcggccttccgggcagcgggcaggaaac 146263797

                                                                             
Query: 61        tggaaggggttcctgagcccgcgaatctgcaggggaagtagaaggacgtctgtgtgtgca 120
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263798 tggaaggggttcctgagcccgcgaatctgcaggggaagtagaaggacgtctgtgtgtgca 146263857

                                                                             
Query: 121       agggagacctctgcctcatttactaaatccctgtactgtgcccaggaaagggcgtggggg 180
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146263858 agggagacctctgcctcatttactaaatccctgtactgtgcccaggaaagggcgtggggg 146263917

                       
Query: 181       ttgagg 186
                 ||||||
Sbjct: 146263918 ttgagg 146263923


  Database: Sscrofa_10.2.fasta
    Posted date:  Nov 16, 2011 10:34 AM
  Number of letters in database: 2,808,509,378
  Number of sequences in database:  4582
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,901,756
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 2
Length of query: 1062
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1041
Effective length of database: 2,808,413,156
Effective search space: 2923558095396
Effective search space used: 2923558095396
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)