Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001075015.1| hematological and neurological expressed 1-l... 310 5e-84
>ref|NP_001075015.1| hematological and neurological expressed 1-like protein [Bos
taurus].
Length = 182
Score = 310 bits (793), Expect = 5e-84
Identities = 153/188 (81%), Positives = 162/188 (86%)
Frame = +2
Query: 32 MFRVPETEGGRAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 211
MFR P++EGGRAG RA KPPGG+ PEEA P RP+RMASNIFGPTEEPQN+PKR
Sbjct: 1 MFRAPDSEGGRAGPRAAKPPGGEPGD---RPEEAAPPRRPDRMASNIFGPTEEPQNIPKR 57
Query: 212 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 391
TNPPGGKGSGIFDES PVQTR RLNPPGGKTSDIFGSPV AASP AHPNKPKDHVLL EG
Sbjct: 58 TNPPGGKGSGIFDESGPVQTRPRLNPPGGKTSDIFGSPVAAASPTAHPNKPKDHVLLCEG 117
Query: 392 EEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPG 571
E+ PDL+ ASASPRQEPGE GGP+EAA QEPAP +DSHEPRLGPRPRSHNKVLNPPG
Sbjct: 118 ED-TPDLR--ASASPRQEPGEPGGPKEAARVQEPAPAVDSHEPRLGPRPRSHNKVLNPPG 174
Query: 572 GKSSISFY 595
GKSSISFY
Sbjct: 175 GKSSISFY 182
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 94,857,782
Number of extensions: 3059004
Number of successful extensions: 17038
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 16699
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 17,681,374
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,041,694
Effective search space: 8972642466
Effective search space used: 8972642466
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_853862.1| PREDICTED: similar to chromosome 16 open readin... 334 2e-91
Alignment gi|NP_001093413.1| hematological and neurological expressed 1 p... 53 1e-06
>ref|XP_853862.1| PREDICTED: similar to chromosome 16 open reading frame 34 [Canis
familiaris].
Length = 188
Score = 334 bits (857), Expect = 2e-91
Identities = 160/188 (85%), Positives = 168/188 (89%)
Frame = +2
Query: 32 MFRVPETEGGRAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 211
MFR PETEGGRAGSRAMKPPGG++S+LFGSPEEA PSSRPNRMASNIFGPTEEPQN+PKR
Sbjct: 1 MFRGPETEGGRAGSRAMKPPGGEASNLFGSPEEAAPSSRPNRMASNIFGPTEEPQNIPKR 60
Query: 212 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 391
TNPPGGKGSGIFDES PVQTRQRLNPPGGKTSDIFGSPV A SPLAHPNKPKDHVLL EG
Sbjct: 61 TNPPGGKGSGIFDESTPVQTRQRLNPPGGKTSDIFGSPVAATSPLAHPNKPKDHVLLCEG 120
Query: 392 EEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPG 571
E+P AA S SPR+EPGE+GGP E AQ+P P DSHEPRLGPRPRSHNKVLNPPG
Sbjct: 121 EDPKSAPTAATSTSPREEPGEKGGPGEGGRAQQPMPTGDSHEPRLGPRPRSHNKVLNPPG 180
Query: 572 GKSSISFY 595
GKSSISFY
Sbjct: 181 GKSSISFY 188
>ref|NP_001093413.1| hematological and neurological expressed 1 protein [Canis lupus
familiaris].
Length = 154
Score = 52.8 bits (125), Expect = 1e-06
Identities = 50/175 (28%), Positives = 67/175 (38%)
Frame = +2
Query: 62 RAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKRTNPPGGKGSG 241
R SR ++PPGG S+ G E + R N+MAS+IFG EE N P G K SG
Sbjct: 15 RNSSRVLRPPGGGSNFSLGFDEPSEQPVRRNKMASSIFGTPEE--NPPSWAKSAGAKSSG 72
Query: 242 IFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKAA 421
++S QR N G + D DLK
Sbjct: 73 GIEDS-ESSGPQRRNSSEGNSGDFL------------------------------DLKGE 101
Query: 422 ASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSI 586
+ + Q ++ PA P+ S + P P + NPPGGKSS+
Sbjct: 102 GNIHENVDTDLQASLGQSEEKPVPAAPVPS---PVAPAPVPSRR--NPPGGKSSL 151
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 99,030,107
Number of extensions: 3153905
Number of successful extensions: 17597
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 17285
Number of HSP's successfully gapped: 2
Length of query: 749
Length of database: 18,874,504
Length adjustment: 110
Effective length of query: 639
Effective length of database: 15,207,544
Effective search space: 9717620616
Effective search space used: 9717620616
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041535.1| hematological and neurological expressed 1-l... 388 e-108
>ref|NP_001041535.1| hematological and neurological expressed 1-like protein [Sus
scrofa].
Length = 188
Score = 388 bits (997), Expect = e-108
Identities = 187/188 (99%), Positives = 187/188 (99%)
Frame = +2
Query: 32 MFRVPETEGGRAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 211
MFRVPETEGGRAGSRAMKPP GDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR
Sbjct: 1 MFRVPETEGGRAGSRAMKPPRGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 60
Query: 212 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 391
TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG
Sbjct: 61 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 120
Query: 392 EEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPG 571
EEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPG
Sbjct: 121 EEPAPDLKAAASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPG 180
Query: 572 GKSSISFY 595
GKSSISFY
Sbjct: 181 GKSSISFY 188
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 61,497,228
Number of extensions: 2006698
Number of successful extensions: 10961
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 10768
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 11,343,932
Length adjustment: 106
Effective length of query: 643
Effective length of database: 8,704,850
Effective search space: 5597218550
Effective search space used: 5597218550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_945175.1| hematological and neurological expressed 1-like... 302 8e-82
Alignment gi|NP_919328.1| hypothetical protein LOC278676 [Mus musculus]. 184 2e-46
Alignment gi|NP_032284.1| hematological and neurological expressed 1 prot... 54 5e-07
>ref|NP_945175.1| hematological and neurological expressed 1-like protein [Mus
musculus].
Length = 190
Score = 302 bits (773), Expect = 8e-82
Identities = 142/190 (74%), Positives = 164/190 (86%), Gaps = 2/190 (1%)
Frame = +2
Query: 32 MFRVPETEGGRAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 211
MF+ +++ G++GSR+MKPPGG+SS LFGSPEE + SS+PNRMASNIFGPTEEP+N+PKR
Sbjct: 1 MFQGADSQAGKSGSRSMKPPGGESSDLFGSPEEGISSSKPNRMASNIFGPTEEPKNIPKR 60
Query: 212 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 391
TNPPGGKGSGIFDES PVQTRQRLNPPGGKTSDIFGSPVTA +PLAHPNKPKDHVLL EG
Sbjct: 61 TNPPGGKGSGIFDESTPVQTRQRLNPPGGKTSDIFGSPVTATAPLAHPNKPKDHVLLCEG 120
Query: 392 EEPAPDLKAAASASPRQEPGEQGGPREAACAQ--EPAPPLDSHEPRLGPRPRSHNKVLNP 565
E+ DLKAA ++PR E ++G +E A+ EP P +DSHEPRLGPRPRSHNKVLNP
Sbjct: 121 EDSKSDLKAATDSTPRGEQSDKGSSKEVEHAKIPEPTPTVDSHEPRLGPRPRSHNKVLNP 180
Query: 566 PGGKSSISFY 595
PGGKSS+SFY
Sbjct: 181 PGGKSSLSFY 190
>ref|NP_919328.1| hypothetical protein LOC278676 [Mus musculus].
Length = 465
Score = 184 bits (468), Expect = 2e-46
Identities = 89/121 (73%), Positives = 100/121 (82%), Gaps = 2/121 (1%)
Frame = +2
Query: 239 GIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKA 418
GIFDES PV+TRQRLNPPGGKTSDIFGSPVTA PLAHPNKPKDHVLL EGE+ DLK+
Sbjct: 345 GIFDESTPVETRQRLNPPGGKTSDIFGSPVTATVPLAHPNKPKDHVLLCEGEDSKSDLKS 404
Query: 419 AASASPRQEPGEQGGPREAACAQ--EPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSISF 592
A ++PR E G++G +E A+ EP +DSHEPRLGPRPRSHNKVLNPPGGKSS+SF
Sbjct: 405 ATDSTPRGEQGDKGSSKEVEHAKIPEPTATVDSHEPRLGPRPRSHNKVLNPPGGKSSLSF 464
Query: 593 Y 595
Y
Sbjct: 465 Y 465
>ref|NP_032284.1| hematological and neurological expressed 1 protein [Mus musculus].
Length = 154
Score = 53.9 bits (128), Expect = 5e-07
Identities = 52/175 (29%), Positives = 65/175 (37%)
Frame = +2
Query: 62 RAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKRTNPPGGKGSG 241
R SR ++PPGG S+ G E A R N+MASNIFG EE N P G K SG
Sbjct: 15 RNSSRVLRPPGGGSNFSLGFDEPAEQPVRKNKMASNIFGTPEE--NPPSWAKSAGSKSSG 72
Query: 242 IFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREGEEPAPDLKAA 421
++S T QR N + D DLK
Sbjct: 73 GREDSESPGT-QRSNSSEASSGDFL------------------------------DLKGE 101
Query: 422 ASASPRQEPGEQGGPREAACAQEPAPPLDSHEPRLGPRPRSHNKVLNPPGGKSSI 586
+ Q + PA P+ S + P P + NPPGGKSS+
Sbjct: 102 GDMHENVDTDFQANLAQMEEKPVPAAPVPS---PVAPAPVPSRR--NPPGGKSSL 151
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 81,158,114
Number of extensions: 2504145
Number of successful extensions: 12515
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12232
Number of HSP's successfully gapped: 3
Length of query: 749
Length of database: 15,617,559
Length adjustment: 109
Effective length of query: 640
Effective length of database: 12,343,635
Effective search space: 7899926400
Effective search space used: 7899926400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_653171.1| hematological and neurological expressed 1-like... 324 2e-88
>ref|NP_653171.1| hematological and neurological expressed 1-like protein [Homo
sapiens].
Length = 190
Score = 324 bits (830), Expect = 2e-88
Identities = 158/190 (83%), Positives = 167/190 (87%), Gaps = 2/190 (1%)
Frame = +2
Query: 32 MFRVPETEGGRAGSRAMKPPGGDSSSLFGSPEEAVPSSRPNRMASNIFGPTEEPQNVPKR 211
MF+VP++EGGRAGSRAMKPPGG+SS+LFGSPEEA PSSRPNRMASNIFGPTEEPQN+PKR
Sbjct: 1 MFQVPDSEGGRAGSRAMKPPGGESSNLFGSPEEATPSSRPNRMASNIFGPTEEPQNIPKR 60
Query: 212 TNPPGGKGSGIFDESMPVQTRQRLNPPGGKTSDIFGSPVTAASPLAHPNKPKDHVLLREG 391
TNPPGGKGSGIFDES PVQTRQ LNPPGGKTSDIFGSPVTA S LAHPNKPKDHV L EG
Sbjct: 61 TNPPGGKGSGIFDESTPVQTRQHLNPPGGKTSDIFGSPVTATSRLAHPNKPKDHVFLCEG 120
Query: 392 EEPAPDLKAAASASPRQEPGEQGGPREAACA--QEPAPPLDSHEPRLGPRPRSHNKVLNP 565
EEP DLKAA S EPGE+G R+A A QEP P +DSHEPRLGPRPRSHNKVLNP
Sbjct: 121 EEPKSDLKAARSIPAGAEPGEKGSARKAGPAKEQEPMPTVDSHEPRLGPRPRSHNKVLNP 180
Query: 566 PGGKSSISFY 595
PGGKSSISFY
Sbjct: 181 PGGKSSISFY 190
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 96,655,468
Number of extensions: 3046395
Number of successful extensions: 16334
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 15995
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 18,297,164
Length adjustment: 110
Effective length of query: 639
Effective length of database: 14,671,124
Effective search space: 9374848236
Effective search space used: 9374848236
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008657
(2249 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 3590 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 3590 bits (1811), Expect = 0.0
Identities = 1811/1811 (100%)
Strand = Plus / Minus
Query: 415 agccgcagcgagcgcctcgcccagacaggagcccggcgagcaaggcggcccgagggaggc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710833 agccgcagcgagcgcctcgcccagacaggagcccggcgagcaaggcggcccgagggaggc 41710774
Query: 475 ggcctgtgcccaggagcccgcgcccccgctggacagccacgagcccaggctgggcccgcg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710773 ggcctgtgcccaggagcccgcgcccccgctggacagccacgagcccaggctgggcccgcg 41710714
Query: 535 gccgcgctctcacaacaaagtcctgaacccacctgggggcaagtccagcatctccttcta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710713 gccgcgctctcacaacaaagtcctgaacccacctgggggcaagtccagcatctccttcta 41710654
Query: 595 ctgaggcaccgccgcatccctcaccgccagacaagcccgggagatagtttagatagagtt 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710653 ctgaggcaccgccgcatccctcaccgccagacaagcccgggagatagtttagatagagtt 41710594
Query: 655 tctttcagcccagagaagcggggtggggagcgggtctgggggagcccgcggcctggcccc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710593 tctttcagcccagagaagcggggtggggagcgggtctgggggagcccgcggcctggcccc 41710534
Query: 715 acagccgtcctgaggccttggccttccaggtgcccggggtcgcggcgcccgtgggagagg 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710533 acagccgtcctgaggccttggccttccaggtgcccggggtcgcggcgcccgtgggagagg 41710474
Query: 775 cccctctggtggcccggggagcggggtcttctcgtctttggtatgttggctcattgggcg 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710473 cccctctggtggcccggggagcggggtcttctcgtctttggtatgttggctcattgggcg 41710414
Query: 835 tccaggtgtcgctgacagagtagcagttagagcctctggggggaaaaggaaaccctggtg 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710413 tccaggtgtcgctgacagagtagcagttagagcctctggggggaaaaggaaaccctggtg 41710354
Query: 895 ggttcctgcgggacggaggggccaatgtggaccccctcgcgcgggggtctctgtggagac 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710353 ggttcctgcgggacggaggggccaatgtggaccccctcgcgcgggggtctctgtggagac 41710294
Query: 955 cctcggatccccgggctgcgacctccgggcccacggcctccactcccaggaactcagttt 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710293 cctcggatccccgggctgcgacctccgggcccacggcctccactcccaggaactcagttt 41710234
Query: 1015 ctctcttgagttccacacatgttcctgaaataccctgattgcttttcctccgtggctgtg 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710233 ctctcttgagttccacacatgttcctgaaataccctgattgcttttcctccgtggctgtg 41710174
Query: 1075 ggcagaacaccggagcgccgttctcggtcttaggcttgatggaaagattccgtagccggg 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710173 ggcagaacaccggagcgccgttctcggtcttaggcttgatggaaagattccgtagccggg 41710114
Query: 1135 tcttccaaggagcccctcgttgccatgtcaaaccctggccacgtcttacctgggaatcac 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710113 tcttccaaggagcccctcgttgccatgtcaaaccctggccacgtcttacctgggaatcac 41710054
Query: 1195 cacctgtcatccatcagagactagtttcggactctttccaggcggttttgcctgtgaatt 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41710053 cacctgtcatccatcagagactagtttcggactctttccaggcggttttgcctgtgaatt 41709994
Query: 1255 gtccccttctttcgcatcggccttgggcctaggcccttgctccccaccactactgcggac 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709993 gtccccttctttcgcatcggccttgggcctaggcccttgctccccaccactactgcggac 41709934
Query: 1315 gctcccccaccagccccactgcttgtctgcaaggccgctcagctcagcaggcctttaagc 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709933 gctcccccaccagccccactgcttgtctgcaaggccgctcagctcagcaggcctttaagc 41709874
Query: 1375 cactgacatacgtccaggtaacgggattatccttgctctgtcttttttatagtcctgttg 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709873 cactgacatacgtccaggtaacgggattatccttgctctgtcttttttatagtcctgttg 41709814
Query: 1435 acagtaggaaagagagatcctcaagaaccttgggttcttgggtttgaattcaacccttga 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709813 acagtaggaaagagagatcctcaagaaccttgggttcttgggtttgaattcaacccttga 41709754
Query: 1495 gaaccttgggttcttcgggctgaattcctggctcacgtccacagagctgttctgaagcag 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709753 gaaccttgggttcttcgggctgaattcctggctcacgtccacagagctgttctgaagcag 41709694
Query: 1555 cagctttacataagtgactatggacgccggtctgtgtgtgacatctttctagacacaagc 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709693 cagctttacataagtgactatggacgccggtctgtgtgtgacatctttctagacacaagc 41709634
Query: 1615 ccaccactcacgtccagcacaggggaaaggaggtgtcttagcacccacgatacggctttg 1674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709633 ccaccactcacgtccagcacaggggaaaggaggtgtcttagcacccacgatacggctttg 41709574
Query: 1675 cagaaactctggccgtacagtttctgatgaggcctggagaccttaggcctggaggttcgg 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709573 cagaaactctggccgtacagtttctgatgaggcctggagaccttaggcctggaggttcgg 41709514
Query: 1735 tagtttggcagcaaggtggtcacgagcccctctcgcgacgcttgcccgcggagataacct 1794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709513 tagtttggcagcaaggtggtcacgagcccctctcgcgacgcttgcccgcggagataacct 41709454
Query: 1795 ttgatctgtcaggtgacacttctcccccctgtgcctctcacgggctgcggcatcaagtcc 1854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709453 ttgatctgtcaggtgacacttctcccccctgtgcctctcacgggctgcggcatcaagtcc 41709394
Query: 1855 tctgcttctctcctgaggggccagcaggcaacggggaggtctgggcggtggggctcttgc 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709393 tctgcttctctcctgaggggccagcaggcaacggggaggtctgggcggtggggctcttgc 41709334
Query: 1915 tgcctccagagctaacaggtgccagaacaatcctcattatcaagattcggttccactccc 1974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709333 tgcctccagagctaacaggtgccagaacaatcctcattatcaagattcggttccactccc 41709274
Query: 1975 agtggcctggacactcaagtgcctgcaggagccacctgccgagctccacttcttccacca 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709273 agtggcctggacactcaagtgcctgcaggagccacctgccgagctccacttcttccacca 41709214
Query: 2035 gcaccccaggggtctacacggcactccgccaaccaaagacagactcacttccagttgccc 2094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709213 gcaccccaggggtctacacggcactccgccaaccaaagacagactcacttccagttgccc 41709154
Query: 2095 tgctgacttaggagccaagaagcactctgtgtgactcaaatacctcctgtctccattctt 2154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709153 tgctgacttaggagccaagaagcactctgtgtgactcaaatacctcctgtctccattctt 41709094
Query: 2155 taaatgcttatttgtaaagaagtctggaattcagaacggtttctccccattaaaaaaatg 2214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41709093 taaatgcttatttgtaaagaagtctggaattcagaacggtttctccccattaaaaaaatg 41709034
Query: 2215 tcatgaatggt 2225
|||||||||||
Sbjct: 41709033 tcatgaatggt 41709023
Score = 295 bits (149), Expect = 5e-77
Identities = 152/153 (99%)
Strand = Plus / Minus
Query: 73 cagggccatgaagcccccgggaggagactcaagcagtctgtttggaagtccagaagaagc 132
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 41716193 cagggccatgaagcccccgagaggagactcaagcagtctgtttggaagtccagaagaagc 41716134
Query: 133 tgtcccttcaagcaggcccaataggatggcatctaacatttttggaccaactgaagagcc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41716133 tgtcccttcaagcaggcccaataggatggcatctaacatttttggaccaactgaagagcc 41716074
Query: 193 tcagaatgtacctaaaaggaccaatccccctgg 225
|||||||||||||||||||||||||||||||||
Sbjct: 41716073 tcagaatgtacctaaaaggaccaatccccctgg 41716041
Score = 287 bits (145), Expect = 1e-74
Identities = 145/145 (100%)
Strand = Plus / Minus
Query: 224 gggggcaaaggaagtggtatctttgacgaatcaatgcctgtgcagactcgacagcgtctg 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41713920 gggggcaaaggaagtggtatctttgacgaatcaatgcctgtgcagactcgacagcgtctg 41713861
Query: 284 aacccccctggcgggaagaccagtgacatctttgggtccccggtcactgctgcctcgccc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41713860 aacccccctggcgggaagaccagtgacatctttgggtccccggtcactgctgcctcgccc 41713801
Query: 344 ctggcacacccaaacaagcccaagg 368
|||||||||||||||||||||||||
Sbjct: 41713800 ctggcacacccaaacaagcccaagg 41713776
Score = 151 bits (76), Expect = 2e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 1 ggcgggcgggaggtgccgaatggcgggcgacatgttccgggtgccggagaccgagggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41721142 ggcgggcgggaggtgccgaatggcgggcgacatgttccgggtgccggagaccgagggtgg 41721083
Query: 61 ccgggctggctccagg 76
||||||||||||||||
Sbjct: 41721082 ccgggctggctccagg 41721067
Score = 101 bits (51), Expect = 2e-18
Identities = 51/51 (100%)
Strand = Plus / Minus
Query: 366 aggaccacgtgctcctgcgtgagggggaggagcccgccccggacctcaaag 416
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41711694 aggaccacgtgctcctgcgtgagggggaggagcccgccccggacctcaaag 41711644
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 60,071,487
Number of extensions: 378
Number of successful extensions: 378
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 5
Length of query: 2249
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 2227
Effective length of database: 2,808,408,574
Effective search space: 6254325894298
Effective search space used: 6254325894298
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)