Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [... 749 0.0
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 91 2e-18
Alignment gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li... 85 1e-16
Alignment gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part... 85 1e-16
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 84 4e-16
Alignment gi|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos ... 82 1e-15
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 80 3e-15
Alignment gi|NP_001040084.1| transducin beta-like protein 3 [Bos taurus]. 79 9e-15
Alignment gi|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos ... 79 9e-15
Alignment gi|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300... 77 3e-14
>ref|NP_001029502.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Bos taurus].
Length = 521
Score = 749 bits (1933), Expect = 0.0
Identities = 367/388 (94%), Positives = 369/388 (95%)
Frame = +3
Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314
PDDLVAPVVKKPHIYYGSLEEKERERLAKGESG+LGKEGLKAGIEAGNINITSGEVFEIE
Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGLLGKEGLKAGIEAGNINITSGEVFEIE 75
Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI
Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135
Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674
LSVVGTDAL YQQTWYHEGP+SLKVARLWIANYSLPRAMKRLEEA
Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPHSLKVARLWIANYSLPRAMKRLEEA 195
Query: 675 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 854
RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK
Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255
Query: 855 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 1034
LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV
Sbjct: 256 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 315
Query: 1035 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD 1214
ADIEGHTVRVARV WHPSGRFLGTTCYDRSWRLWDLEAQEEILH EGHSMGVYDIA HQD
Sbjct: 316 ADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQD 375
Query: 1215 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
GSLAGTGGLDAFGRVWDLRTGRCIMFLE
Sbjct: 376 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 403
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +3
Query: 798 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+FSPN +AT CK+W + ++T+ H V + F P L
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFL-------L 465
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+ A D + K+W+ P+ + GH +V + G+ + T YDR+++LW E
Sbjct: 466 TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
Score = 50.4 bits (119), Expect = 3e-06
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 1/155 (0%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F + + T ++W + + L GH + I F P ++A+
Sbjct: 372 FHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG--------YHIAT 423
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP-SGRFLGTTCYDRSWRLWDLEAQEE 1157
+ D + K+W L V I H V V + P G FL T YD + ++W
Sbjct: 424 GSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSP 483
Query: 1158 ILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+ GH V + + DG L T D ++W
Sbjct: 484 LKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 90.9 bits (224), Expect = 2e-18
Identities = 46/164 (28%), Positives = 80/164 (48%)
Frame = +3
Query: 804 SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC 983
+P +AT + CKLWSV HT RGH + + F+P+ST+ +A+
Sbjct: 144 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTL--------VATG 195
Query: 984 AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL 1163
+ D + KLW + S E V + GH+ + + ++ SG + T +D + +W+ + ++
Sbjct: 196 SMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVY 255
Query: 1164 HXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
GH + + D SL TG +D ++WD G+C+ L
Sbjct: 256 TLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATL 299
Score = 84.7 bits (208), Expect = 2e-16
Identities = 46/171 (26%), Positives = 79/171 (46%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ + + T + CKLW LHTL GH V AI F+ +
Sbjct: 94 PLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFN-------NPY 146
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
+A+ + D + KLWS+++ + GHT + + ++P + T D + +LWD+
Sbjct: 147 GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDI 206
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
++ EE+ GHS + ++ + G+ TG D VW+ TGR + L
Sbjct: 207 QSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTL 257
Score = 75.9 bits (185), Expect = 7e-14
Identities = 44/165 (26%), Positives = 79/165 (47%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTV 947
IG IS F+ + ++ T CKLW + + TL GH+ + F
Sbjct: 258 IGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCF------ 311
Query: 948 SLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
D +A+ +ADG+ +++S + E V +EGH ++++ ++P G L T D++
Sbjct: 312 --DYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTA 369
Query: 1128 RLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
R+WD + + + EGH+ ++ A + G + TG D R+W
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 69.7 bits (169), Expect = 5e-12
Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 34/200 (17%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKS----------TVS 950
F+P S ++AT KLW + + TL GH+ + ++ F+ TV+
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 244
Query: 951 LDQKDVN------LASCAA------------------DGSVKLWSLDSDEPVADIEGHTV 1058
+ + D + CA D + KLW + + VA + GH
Sbjct: 245 VWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDD 304
Query: 1059 RVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGG 1238
+ + +G+ + T D + R++ +E + EGH + I+ + G+ TG
Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGS 364
Query: 1239 LDAFGRVWDLRTGRCIMFLE 1298
D R+WD +TG+C+ LE
Sbjct: 365 SDKTARIWDAQTGQCLQVLE 384
Score = 53.5 bits (127), Expect = 4e-07
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD-G 1217
+ H + + V + SG T YDR+ +LWD + EE+ EGH VY IA + G
Sbjct: 88 LRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYG 147
Query: 1218 SLAGTGGLDAFGRVWDLRTGRC 1283
TG D ++W + TG+C
Sbjct: 148 DKIATGSFDKTCKLWSVETGKC 169
>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
Length = 589
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/182 (28%), Positives = 78/182 (42%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP+S A+A +LWS L GH +V
Sbjct: 371 LGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVD 430
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 431 CVKFHPNSNY--------LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKY 482
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + + D SL + +D RVWD+R+
Sbjct: 483 LASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSS 542
Query: 1278 RC 1283
C
Sbjct: 543 HC 544
Score = 62.8 bits (151), Expect = 7e-10
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F PNS LAT +LWS N + GH V ++ F P LAS
Sbjct: 434 FHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKY--------LAS 485
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
D +KLW L S ++ GHT + + + P + + D S R+WD+ +
Sbjct: 486 AGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCS 545
Query: 1161 LHXEGHS---MGVY 1193
+G S +GVY
Sbjct: 546 TPADGSSSELVGVY 559
Score = 55.1 bits (131), Expect = 1e-07
Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 24/185 (12%)
Frame = +3
Query: 804 SPNSKMLATACWSGLCKLWSVPD------------------CNLLHTLRGHNTNVGAIV- 926
SP+SK+LA + KLWS+ C+ L + N+G +
Sbjct: 277 SPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDFLEEEDDEDDNLGTEMK 336
Query: 927 -----FHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSG 1091
P + L SC+ D S++ W L S +GH V + P
Sbjct: 337 VLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHS 396
Query: 1092 RFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
+ + +DR+ RLW + + GH V + H + + TG D R+W +
Sbjct: 397 LYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQ 456
Query: 1272 TGRCI 1286
G +
Sbjct: 457 QGNSV 461
>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
Length = 265
Score = 85.1 bits (209), Expect = 1e-16
Identities = 52/182 (28%), Positives = 78/182 (42%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP+S A+A +LWS L GH +V
Sbjct: 47 LGSFTNTVLYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVD 106
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 107 CVKFHPNSNY--------LATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKY 158
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + + D SL + +D RVWD+R+
Sbjct: 159 LASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSS 218
Query: 1278 RC 1283
C
Sbjct: 219 HC 220
Score = 62.8 bits (151), Expect = 7e-10
Identities = 39/134 (29%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F PNS LAT +LWS N + GH V ++ F P LAS
Sbjct: 110 FHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKY--------LAS 161
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
D +KLW L S ++ GHT + + + P + + D S R+WD+ +
Sbjct: 162 AGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCS 221
Query: 1161 LHXEGHS---MGVY 1193
+G S +GVY
Sbjct: 222 TPADGSSSELVGVY 235
Score = 52.0 bits (123), Expect = 1e-06
Identities = 34/135 (25%), Positives = 54/135 (40%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
+ LRGH V + F S+ L SC+ D S++ W L S +GH
Sbjct: 11 MKVLRGHCGPVYSTRFLADSS--------GLLSCSEDMSIRYWDLGSFTNTVLYQGHAYP 62
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V + P + + +DR+ RLW + + GH V + H + + TG
Sbjct: 63 VWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGST 122
Query: 1242 DAFGRVWDLRTGRCI 1286
D R+W + G +
Sbjct: 123 DKTVRLWSTQQGNSV 137
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 83.6 bits (205), Expect = 4e-16
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + +S FSPN + LA++ L K+W D T+ GH + + + S +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S + D ++K+W + S + + ++GH+ V ++P + + +D S R
Sbjct: 102 -------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+WD++ + + HS V + ++DGSL + D R+WD +G+C+ L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/143 (27%), Positives = 68/143 (47%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD +K+W + I
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEW--------LASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ ++WD+ + + + +GHS V+ + +L
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D R+WD++TG+C+ L
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTL 167
Score = 52.4 bits (124), Expect = 9e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + A KLW L T GH I + T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--- 269
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 270 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 1128 RLW 1136
+LW
Sbjct: 328 KLW 330
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ GHT V+ V + P+G +L ++ D+ ++W + GH +G+ D+A D +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 1221 LAGTGGLDAFGRVWDLRTGRCIMFLE 1298
L + D ++WD+ +G+C+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ ++ + GLC++W L TL N V + F P L
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-- 230
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + + GH + + S G+++ + D
Sbjct: 231 ------AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H ++ + L+
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
>ref|NP_001095379.1| katanin p80 WD40-containing subunit B1 [Bos taurus].
Length = 663
Score = 82.0 bits (201), Expect = 1e-15
Identities = 48/188 (25%), Positives = 83/188 (44%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
S+ N S G P+ + +++ SG ++W + +L TL GH N+
Sbjct: 49 SINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANI 108
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
++ FHP +AS + D ++KLW + V GH+ V + + P G+
Sbjct: 109 CSLDFHPYGEF--------VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
+L + D + +LWDL A + + GH+ V + H + L +G D R WDL
Sbjct: 161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Query: 1275 GRCIMFLE 1298
+ + +E
Sbjct: 221 FQVVSCIE 228
Score = 72.8 bits (177), Expect = 6e-13
Identities = 38/157 (24%), Positives = 74/157 (47%)
Frame = +3
Query: 810 NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA 989
+ ++LAT LWS+ N + +L GH + P +V L+ + + + +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTS--------PVESVRLNTPEELIVAGSQ 83
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
GS+++W L++ + + + GH + + +HP G F+ + D + +LWD+ + +
Sbjct: 84 SGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY 143
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGR 1280
GHS V + DG + D ++WDL G+
Sbjct: 144 RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/135 (26%), Positives = 59/135 (43%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L + H +NV ++V K++ L LA+ D V LWS++ + + GHT
Sbjct: 13 LQEIVAHASNVSSLVLG-KASGRL------LATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V V + + S R+WDLEA + + GH + + H G +G
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 1242 DAFGRVWDLRTGRCI 1286
D ++WD+R C+
Sbjct: 126 DTNIKLWDIRRKGCV 140
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 80.5 bits (197), Expect = 3e-15
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Frame = +3
Query: 759 CSQI--GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFH 932
C Q+ G R + FS +SK LA+ W LW V +L GH +V + F
Sbjct: 97 CLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFA 156
Query: 933 PKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVA---DIEGHTVRVARVMWHPSGRFLG 1103
P S LA+ + D ++++W L + P ++EGH ++ + + PSG L
Sbjct: 157 PSSDC--------LATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSG-LLA 207
Query: 1104 TTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+ +D++ +W + ++ +GH V IA DG + G +VWD TG+C
Sbjct: 208 SGSWDKTIHIWKPSTRSLLIQLKGHITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTGKC 267
Score = 67.0 bits (162), Expect = 3e-11
Identities = 43/159 (27%), Positives = 67/159 (42%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
FSP+ + L TA G W LL LRGH V F P + AS
Sbjct: 29 FSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRL--------FAS 80
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
+ D +++LW + + ++GH V V + + L + +D+ LW++++ + +
Sbjct: 81 TSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVL 140
Query: 1161 LHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
H GH V TG D+ R+WDLR G
Sbjct: 141 RHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAG 179
Score = 53.1 bits (126), Expect = 5e-07
Identities = 28/105 (26%), Positives = 48/105 (45%)
Frame = +3
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
L + + DG V W S + + GH V + P GR +T DR+ RLWD
Sbjct: 36 LLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFASTSCDRTIRLWDATDA 95
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCI 1286
+ + +GH V ++ D +GG D +W++++G+ +
Sbjct: 96 KCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVL 140
>ref|NP_001040084.1| transducin beta-like protein 3 [Bos taurus].
Length = 800
Score = 79.0 bits (193), Expect = 9e-15
Identities = 48/162 (29%), Positives = 76/162 (46%)
Frame = +3
Query: 777 DRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD 956
D+ I+ +PN K+LAT KLW++P C LL T GH + + F P V
Sbjct: 479 DKDINSVAVAPNDKLLATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQV--- 535
Query: 957 QKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLW 1136
LA+ +ADG++KLW+L + EGH V +V + G L ++ D +LW
Sbjct: 536 -----LATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLW 590
Query: 1137 DLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
++ E + + H V+ + + A TG D+ +W
Sbjct: 591 TIKNNECVRTLDAHEDKVWGLHCSRLDDRALTGASDSRVVLW 632
Score = 65.1 bits (157), Expect = 1e-10
Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 15/183 (8%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ F P S +LAT G ++W V C H RG V + FHP D
Sbjct: 111 PVATMAFDPTSTLLATGGCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHP------DPA 164
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
+ L S AAD S+++WSL +A + H V + + G + ++ D+ +WDL
Sbjct: 165 RLLLFSSAADTSIRVWSLQERSCLAVLTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDL 224
Query: 1143 ---------------EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
EA + +GV LH T G RVW+ +G
Sbjct: 225 RSLQATRTVPVFESVEAAVLLPEEPAPELGVKSAGLH-----FLTAGDQGALRVWEAASG 279
Query: 1278 RCI 1286
RC+
Sbjct: 280 RCV 282
Score = 60.5 bits (145), Expect = 3e-09
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Frame = +3
Query: 822 LATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN---------- 971
L T KLW +P+ LL GH G + ++T KD+N
Sbjct: 437 LVTGSQDCTVKLWPLPEA-LLSKGTGHEG--GPVFLQAQATQHCHDKDINSVAVAPNDKL 493
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
LA+ + D + KLW+L + + GH + V + P + L T D + +LW L+
Sbjct: 494 LATGSQDRTAKLWALPRCQLLGTFSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDF 553
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ EGH V +A G+ + G D ++W ++ C+ L+
Sbjct: 554 SCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLLKLWTIKNNECVRTLD 602
Score = 57.4 bits (137), Expect = 3e-08
Identities = 32/98 (32%), Positives = 51/98 (52%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP ++LATA G KLW++ D + L T GH+ +V + F + T
Sbjct: 519 GHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGT-- 576
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
L S +DG +KLW++ ++E V ++ H +V
Sbjct: 577 ------QLLSSGSDGLLKLWTIKNNECVRTLDAHEDKV 608
Score = 54.7 bits (130), Expect = 2e-07
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRG-HNTNVGAIVFHPKSTVS 950
D I+ SP+ K+L TA + L W+ + ++ + H V + F P ST+
Sbjct: 65 DQEDITAFDLSPDDKVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTL- 123
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWH--PSGRFLGTTCYDRS 1124
LA+ DG+V++W + G V V +H P+ L ++ D S
Sbjct: 124 -------LATGGCDGAVRVWDVVRCYGTHHFRGSPGVVHLVAFHPDPARLLLFSSAADTS 176
Query: 1125 WRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
R+W L+ + + H V + DG + G D +WDLR+
Sbjct: 177 IRVWSLQERSCLAVLTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDLRS 226
>ref|XP_002685607.1| PREDICTED: sperm associated antigen 16 [Bos taurus].
Length = 628
Score = 79.0 bits (193), Expect = 9e-15
Identities = 46/167 (27%), Positives = 73/167 (43%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+S P+ +L + + K+ +P N+L T GH + FHP
Sbjct: 351 PVSCIIMHPHKDLLVSCGEDRVWKMVGLPKGNVLLTGLGHTDWLSNCCFHPSGN------ 404
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
LA+ + D +VKLW + + EGHT V WH G F+ ++ D + ++WD+
Sbjct: 405 --KLATSSGDTTVKLWDVSKGNCILTFEGHTHAVWSCTWHSCGDFVASSSLDTTSKIWDV 462
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
++ GH+ V I + TG D +WD RTG+C
Sbjct: 463 NSERCRYTLYGHTDSVNSIEFFPYSNTLLTGSADKSLSIWDARTGKC 509
Score = 61.6 bits (148), Expect = 1e-09
Identities = 43/174 (24%), Positives = 69/174 (39%)
Frame = +3
Query: 750 NNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVF 929
N + +G +S C F P+ LAT+ KLW V N + T GH V + +
Sbjct: 382 NVLLTGLGHTDWLSNCCFHPSGNKLATSSGDTTVKLWDVSKGNCILTFEGHTHAVWSCTW 441
Query: 930 HPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTT 1109
H +AS + D + K+W ++S+ + GHT V + + P L T
Sbjct: 442 HSCGDF--------VASSSLDTTSKIWDVNSERCRYTLYGHTDSVNSIEFFPYSNTLLTG 493
Query: 1110 CYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
D+S +WD + GH + D G + + ++WD R
Sbjct: 494 SADKSLSIWDARTGKCEQSLYGHMHSINDATFTPRGHMIASCDACGVTKLWDFR 547
>ref|XP_002700435.1| PREDICTED: TAF5-like RNA polymerase II, p300/CBP-associated factor
(PCAF)-associated factor, 65kDa [Bos taurus].
Length = 600
Score = 77.4 bits (189), Expect = 3e-14
Identities = 48/179 (26%), Positives = 77/179 (43%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP+S A+A + +LWS L GH V
Sbjct: 382 LESFTNTVLYQGHAYPVWDLDISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVD 441
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 442 CVKFHPNSNY--------LATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQY 493
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
L + D+ +LWDL + GH+ + + D S+ + +D R+WD+++
Sbjct: 494 LVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKS 552
Score = 64.7 bits (156), Expect = 2e-10
Identities = 43/170 (25%), Positives = 68/170 (40%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTV 947
+G P+ F P+S L + + W + +GH V + P S
Sbjct: 350 LGHCGPVYSTRFLPDSSALLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLF 409
Query: 948 SLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
AS + D + +LWS D P+ GH V V +HP+ +L T D++
Sbjct: 410 --------FASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTV 461
Query: 1128 RLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
RLW + + GH V +A +G + G D ++WDL +G
Sbjct: 462 RLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASG 511
Score = 62.0 bits (149), Expect = 1e-09
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 29/190 (15%)
Frame = +3
Query: 804 SPNSKMLATACWSGLCKLWSVP----------DCNLLH-------------------TLR 896
SP++K+LAT + KLWS+ D + +H L
Sbjct: 291 SPDNKLLATGLNNSSIKLWSLTSKFKSKPHQIDVSHIHLINDTLEVDEEDRTATERKVLL 350
Query: 897 GHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVM 1076
GH V + F P S+ L SC+ D S++ W L+S +GH V +
Sbjct: 351 GHCGPVYSTRFLPDSSA--------LLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLD 402
Query: 1077 WHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGR 1256
P F + YD + RLW + + GH GV + H + + TG D R
Sbjct: 403 ISPHSLFFASASYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVR 462
Query: 1257 VWDLRTGRCI 1286
+W + G +
Sbjct: 463 LWSAQQGNSV 472
Score = 61.2 bits (147), Expect = 2e-09
Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F PNS LAT +LWS N + GH V + F P L S
Sbjct: 445 FHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHCGPVRCLAFSPNGQY--------LVS 496
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
D +KLW L S D+ GHT + V + + + D S R+WD++++
Sbjct: 497 AGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFSLDSSVIASASMDNSVRIWDIKSKHNS 556
Query: 1161 LHXEGHS---MGVY 1193
+G S +GVY
Sbjct: 557 TPADGSSSELLGVY 570
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,378,802
Number of extensions: 1334576
Number of successful extensions: 6288
Number of sequences better than 1.0e-05: 90
Number of HSP's gapped: 5683
Number of HSP's successfully gapped: 199
Length of query: 433
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,207,134
Effective search space: 4659939952
Effective search space used: 4659939952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing ... 754 0.0
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 90 4e-18
Alignment gi|XP_536057.2| PREDICTED: similar to sperm associated antigen ... 84 4e-16
Alignment gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi... 82 1e-15
Alignment gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi... 82 1e-15
Alignment gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ... 80 4e-15
Alignment gi|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [C... 78 2e-14
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 75 1e-13
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 75 1e-13
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 75 1e-13
>ref|XP_532038.2| PREDICTED: similar to PRP4 pre-mRNA processing factor 4 homolog
[Canis familiaris].
Length = 521
Score = 754 bits (1946), Expect = 0.0
Identities = 370/388 (95%), Positives = 370/388 (95%)
Frame = +3
Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314
PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE
Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 75
Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI
Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135
Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674
LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA
Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 195
Query: 675 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 854
RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK
Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255
Query: 855 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 1034
LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV
Sbjct: 256 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 315
Query: 1035 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD 1214
ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH EGHSMGVYDIA HQD
Sbjct: 316 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQD 375
Query: 1215 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
GSLAGTGGLDAFGRVWDLRTGRCIMFLE
Sbjct: 376 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 403
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +3
Query: 798 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+FSPN +AT CK+W + ++T+ H V + F P L
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFL-------L 465
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+ A D + K+W+ P+ + GH +V + G+ + T YDR+++LW E
Sbjct: 466 TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 1/155 (0%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F + + T ++W + + L GH + I F P ++A+
Sbjct: 372 FHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG--------YHIAT 423
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP-SGRFLGTTCYDRSWRLWDLEAQEE 1157
+ D + K+W L V I H V V + P G FL T YD + ++W
Sbjct: 424 GSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSP 483
Query: 1158 ILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+ GH V + + DG L T D ++W
Sbjct: 484 LKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 90.1 bits (222), Expect = 4e-18
Identities = 46/164 (28%), Positives = 79/164 (48%)
Frame = +3
Query: 804 SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC 983
+P +AT + CKLWSV HT RGH + + F+P+ST+ +A+
Sbjct: 144 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTL--------VATG 195
Query: 984 AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL 1163
+ D + KLW + S E V + GH+ + + ++ SG + T +D + +W+ + ++
Sbjct: 196 SMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVY 255
Query: 1164 HXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
GH + + D SL TG +D +WD G+C+ L
Sbjct: 256 TLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATL 299
Score = 86.3 bits (212), Expect = 6e-17
Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 10/246 (4%)
Frame = +3
Query: 588 HEGPNSLKVARLWIANYSLPRAMKRL-EEARLHKEIPETTRTSQM----QELHKSLRSLN 752
+E LK + + N S + L EE + + + +R+ Q+ Q L LR +
Sbjct: 19 YEKSGELKTKSIDLLNLSPSTEVNALVEEIQKAEPLITASRSEQVKLLIQRLQDKLRQHS 78
Query: 753 NFCSQI-----GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
N + P++ + + T + CKLW LHTL GH V
Sbjct: 79 NHTFYLFKVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVY 138
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
AI F+ + +A+ + D + KLWS+++ + GHT + + ++P
Sbjct: 139 AIAFN-------NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTL 191
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
+ T D + +LWD+++ EE+ GHS + ++ + G TG D VW+ TG
Sbjct: 192 VATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTG 251
Query: 1278 RCIMFL 1295
R + L
Sbjct: 252 RKVYTL 257
Score = 70.1 bits (170), Expect = 4e-12
Identities = 41/165 (24%), Positives = 77/165 (46%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTV 947
IG IS F+ + ++ T C LW + + TL GH+ + F
Sbjct: 258 IGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCF------ 311
Query: 948 SLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
D +A+ +ADG+ +++S + + + +EGH ++++ ++P G L T D +
Sbjct: 312 --DYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETA 369
Query: 1128 RLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
R+WD + + + EGH+ ++ A + G + TG D R+W
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
Score = 68.9 bits (167), Expect = 1e-11
Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 34/200 (17%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKS----------TVS 950
F+P S ++AT KLW + + TLRGH+ + ++ F+ TV+
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244
Query: 951 LDQKDVN------LASCAA------------------DGSVKLWSLDSDEPVADIEGHTV 1058
+ + D + CA D + LW + + VA + GH
Sbjct: 245 VWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDD 304
Query: 1059 RVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGG 1238
+ + +G+ + T D + R++ ++ + EGH + I+ + G+ TG
Sbjct: 305 EILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGS 364
Query: 1239 LDAFGRVWDLRTGRCIMFLE 1298
D R+WD +TG+C+ LE
Sbjct: 365 ADETARIWDAQTGQCLQVLE 384
>ref|XP_536057.2| PREDICTED: similar to sperm associated antigen 16 isoform 1 [Canis
familiaris].
Length = 681
Score = 83.6 bits (205), Expect = 4e-16
Identities = 49/167 (29%), Positives = 73/167 (43%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+S P+ +L T L K+ +P N+LHT GH + FHP
Sbjct: 453 PVSCVIMHPHKDILVTCGEDRLWKVVGLPKGNVLHTGFGHTDWLSNCCFHPSGN------ 506
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
LA+ + D +VKLW L + EGH+ V WH G F+ ++ D + ++WD+
Sbjct: 507 --KLATSSGDTTVKLWDLSKGNCILTFEGHSHAVWSCTWHSCGDFVASSSLDTTSKIWDV 564
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
++ GH+ V I + TG D +WD RTG C
Sbjct: 565 NSERCRCTLYGHTDSVNSIEFFPCSNTLLTGSADKSLSIWDARTGNC 611
Score = 71.6 bits (174), Expect = 2e-12
Identities = 43/138 (31%), Positives = 61/138 (44%)
Frame = +3
Query: 870 DCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEG 1049
D L R H V ++ HP KD+ L +C D K+ L + G
Sbjct: 440 DYKLNSIFRLHELPVSCVIMHP-------HKDI-LVTCGEDRLWKVVGLPKGNVLHTGFG 491
Query: 1050 HTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAG 1229
HT ++ +HPSG L T+ D + +LWDL IL EGHS V+ H G
Sbjct: 492 HTDWLSNCCFHPSGNKLATSSGDTTVKLWDLSKGNCILTFEGHSHAVWSCTWHSCGDFVA 551
Query: 1230 TGGLDAFGRVWDLRTGRC 1283
+ LD ++WD+ + RC
Sbjct: 552 SSSLDTTSKIWDVNSERC 569
>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 2 [Canis
familiaris].
Length = 655
Score = 82.0 bits (201), Expect = 1e-15
Identities = 48/188 (25%), Positives = 83/188 (44%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
S+ N S G P+ + +++ SG ++W + +L TL GH N+
Sbjct: 49 SINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANI 108
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
++ FHP +AS + D ++KLW + V GH+ V + + P G+
Sbjct: 109 CSLDFHPYGEF--------VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
+L + D + +LWDL A + + GH+ V + H + L +G D R WDL
Sbjct: 161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Query: 1275 GRCIMFLE 1298
+ + +E
Sbjct: 221 FQVVSCIE 228
Score = 72.8 bits (177), Expect = 7e-13
Identities = 38/157 (24%), Positives = 74/157 (47%)
Frame = +3
Query: 810 NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA 989
+ ++LAT LWS+ N + +L GH + P +V L+ + + + +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTS--------PVESVRLNTPEELIVAGSQ 83
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
GS+++W L++ + + + GH + + +HP G F+ + D + +LWD+ + +
Sbjct: 84 SGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY 143
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGR 1280
GHS V + DG + D ++WDL G+
Sbjct: 144 RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/135 (26%), Positives = 59/135 (43%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L + H +NV ++V K++ L LA+ D V LWS++ + + GHT
Sbjct: 13 LQEIVAHASNVSSLVLG-KASGRL------LATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V V + + S R+WDLEA + + GH + + H G +G
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 1242 DAFGRVWDLRTGRCI 1286
D ++WD+R C+
Sbjct: 126 DTNIKLWDIRRKGCV 140
>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1 (Katanin
p80 subunit B1) (p80 katanin) isoform 1 [Canis
familiaris].
Length = 655
Score = 82.0 bits (201), Expect = 1e-15
Identities = 48/188 (25%), Positives = 83/188 (44%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
S+ N S G P+ + +++ SG ++W + +L TL GH N+
Sbjct: 49 SINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANI 108
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
++ FHP +AS + D ++KLW + V GH+ V + + P G+
Sbjct: 109 CSLDFHPYGEF--------VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
+L + D + +LWDL A + + GH+ V + H + L +G D R WDL
Sbjct: 161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Query: 1275 GRCIMFLE 1298
+ + +E
Sbjct: 221 FQVVSCIE 228
Score = 72.8 bits (177), Expect = 7e-13
Identities = 38/157 (24%), Positives = 74/157 (47%)
Frame = +3
Query: 810 NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA 989
+ ++LAT LWS+ N + +L GH + P +V L+ + + + +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTS--------PVESVRLNTPEELIVAGSQ 83
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
GS+++W L++ + + + GH + + +HP G F+ + D + +LWD+ + +
Sbjct: 84 SGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY 143
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGR 1280
GHS V + DG + D ++WDL G+
Sbjct: 144 RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/135 (26%), Positives = 59/135 (43%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L + H +NV ++V K++ L LA+ D V LWS++ + + GHT
Sbjct: 13 LQEIVAHASNVSSLVLG-KASGRL------LATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V V + + S R+WDLEA + + GH + + H G +G
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 1242 DAFGRVWDLRTGRCI 1286
D ++WD+R C+
Sbjct: 126 DTNIKLWDIRRKGCV 140
>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L (PCAF
associated factor 65 beta) (PAF65-beta) [Canis
familiaris].
Length = 589
Score = 80.1 bits (196), Expect = 4e-15
Identities = 51/182 (28%), Positives = 75/182 (41%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP S A+ +LWS L GH +V
Sbjct: 371 LGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD 430
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 431 CVKFHPNSNY--------LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKY 482
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + + D SL + +D RVWD+R
Sbjct: 483 LASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNT 542
Query: 1278 RC 1283
C
Sbjct: 543 YC 544
Score = 54.7 bits (130), Expect = 2e-07
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 24/191 (12%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPD------------------CNLLHTLRGHNTN 911
++ SP+SK+LA + KLWS+ C++L + N
Sbjct: 271 LNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDN 330
Query: 912 VGAIV------FHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARV 1073
G + P + L SC+ D S++ W L S +GH V +
Sbjct: 331 AGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDL 390
Query: 1074 MWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFG 1253
P + + +DR+ RLW + + GH V + H + + TG D
Sbjct: 391 DISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 1254 RVWDLRTGRCI 1286
R+W + G +
Sbjct: 451 RLWSAQQGNSV 461
>ref|XP_547184.2| PREDICTED: similar to transducin beta-like 3 [Canis familiaris].
Length = 801
Score = 77.8 bits (190), Expect = 2e-14
Identities = 47/162 (29%), Positives = 76/162 (46%)
Frame = +3
Query: 777 DRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD 956
D+ I+ +PN K+LAT KLW++P C LL GH + + F P V
Sbjct: 476 DKDINSVAVAPNDKLLATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQV--- 532
Query: 957 QKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLW 1136
LA+ +ADG++KLW+L + EGH V +V++ G L ++ D +LW
Sbjct: 533 -----LATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGTQLLSSGSDGLVKLW 587
Query: 1137 DLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
++ E + + H V+ + + A TG D+ +W
Sbjct: 588 TIKNNECVKTLDAHEDKVWGLHCSRLDDRALTGASDSCVILW 629
Score = 60.1 bits (144), Expect = 5e-09
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 10/169 (5%)
Frame = +3
Query: 822 LATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN---------- 971
L T KLW +P+ L +G + G I+ ++T KD+N
Sbjct: 434 LVTGSQDCTVKLWPIPEALLS---KGTAPDSGPILLQAQATQRCHDKDINSVAVAPNDKL 490
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
LA+ + D + KLW+L + + GH + V + P + L T D + +LW L+
Sbjct: 491 LATGSQDRTAKLWALPHCQLLGIFSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDF 550
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ EGH V + G+ + G D ++W ++ C+ L+
Sbjct: 551 SCLKTFEGHDASVLKVVFVSRGTQLLSSGSDGLVKLWTIKNNECVKTLD 599
Score = 60.1 bits (144), Expect = 5e-09
Identities = 34/98 (34%), Positives = 52/98 (53%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP ++LATA G KLW++ D + L T GH+ +V +VF + T
Sbjct: 516 GHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVVFVSRGT-- 573
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
L S +DG VKLW++ ++E V ++ H +V
Sbjct: 574 ------QLLSSGSDGLVKLWTIKNNECVKTLDAHEDKV 605
Score = 58.5 bits (140), Expect = 1e-08
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 15/183 (8%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ F P S +LAT G ++W + H RG V + FHP D
Sbjct: 108 PVATMAFDPTSTLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVTFHP------DPA 161
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
+ L S AAD ++++WSL +A + H V + + G + ++ D+ +WDL
Sbjct: 162 RLLLFSSAADATIRMWSLQDQSCLAVMTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDL 221
Query: 1143 EAQEEILHXEGHSMGVYD---------------IALHQDGSLAGTGGLDAFGRVWDLRTG 1277
++ H ++ V++ + + G T G RVW+ +G
Sbjct: 222 QS-----HQATRTVPVFESVEAAVLLPEELVPKLDVKSKGLHFLTAGDQGLLRVWEAASG 276
Query: 1278 RCI 1286
+C+
Sbjct: 277 QCV 279
Score = 53.5 bits (127), Expect = 4e-07
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRG-HNTNVGAIVFHPKSTVS 950
D I+ SP+ ++L TA + L W+ + ++ + H V + F P ST+
Sbjct: 62 DQEDITAFELSPDDQVLVTATRALLLAQWAWREGSITRLWKAIHTAPVATMAFDPTSTL- 120
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWH--PSGRFLGTTCYDRS 1124
LA+ DG+V++W + G V V +H P+ L ++ D +
Sbjct: 121 -------LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVTFHPDPARLLLFSSAADAT 173
Query: 1125 WRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
R+W L+ Q + H V + DG + G D +WDL++
Sbjct: 174 IRMWSLQDQSCLAVMTAHYSAVTSLTFSADGHTMLSSGRDKICVIWDLQS 223
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 1 [Canis familiaris].
Length = 372
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/171 (26%), Positives = 77/171 (45%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G P++ F P ++ +A K+W + TL+GH +V +S
Sbjct: 68 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV--------QDIS 119
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
D LASC+AD ++KLW E + + GH V+ V P+G + + D++ +
Sbjct: 120 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 179
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+W+++ + GH V + +QDG+L + D RVW + T C
Sbjct: 180 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 230
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/134 (26%), Positives = 67/134 (50%)
Frame = +3
Query: 885 HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
+ L GH + V ++FHP +V + S + D ++K+W ++ + ++GHT V
Sbjct: 64 YALSGHRSPVTRVIFHPVFSV--------MVSASEDATIKVWDYETGDFERTLKGHTDSV 115
Query: 1065 ARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+ + SG+ L + D + +LWD + E I GH V +A+ +G + D
Sbjct: 116 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRD 175
Query: 1245 AFGRVWDLRTGRCI 1286
++W+++TG C+
Sbjct: 176 KTIKMWEVQTGYCV 189
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 20/195 (10%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G D +S PN + +A K+W V + T GH V V
Sbjct: 152 GHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--------RMVR 203
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS-------------- 1088
+Q +ASC+ D +V++W + + E A++ H V + W P
Sbjct: 204 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSET 263
Query: 1089 ------GRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAF 1250
G FL + D++ ++WD+ ++ GH V + H G + D
Sbjct: 264 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 323
Query: 1251 GRVWDLRTGRCIMFL 1295
RVWD + RC+ L
Sbjct: 324 LRVWDYKNKRCMKTL 338
Score = 52.8 bits (125), Expect = 7e-07
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Frame = +3
Query: 852 KLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN------------LASCAADG 995
++W V LR H V I + P+S+ S + L S + D
Sbjct: 221 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 280
Query: 996 SVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEG 1175
++K+W + + + + GH V V++H G+F+ + D++ R+WD + + +
Sbjct: 281 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 340
Query: 1176 HSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
H V + H+ TG +D +VW+ R
Sbjct: 341 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 372
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 5 [Canis familiaris].
Length = 415
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/171 (26%), Positives = 77/171 (45%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G P++ F P ++ +A K+W + TL+GH +V +S
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV--------QDIS 157
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
D LASC+AD ++KLW E + + GH V+ V P+G + + D++ +
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+W+++ + GH V + +QDG+L + D RVW + T C
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/134 (26%), Positives = 67/134 (50%)
Frame = +3
Query: 885 HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
+ L GH + V ++FHP +V + S + D ++K+W ++ + ++GHT V
Sbjct: 102 YALSGHRSPVTRVIFHPVFSV--------MVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 1065 ARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+ + SG+ L + D + +LWD + E I GH V +A+ +G + D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRD 213
Query: 1245 AFGRVWDLRTGRCI 1286
++W+++TG C+
Sbjct: 214 KTIKMWEVQTGYCV 227
Score = 57.4 bits (137), Expect = 3e-08
Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 25/200 (12%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G D +S PN + +A K+W V + T GH V V
Sbjct: 190 GHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--------RMVR 241
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS-------------- 1088
+Q +ASC+ D +V++W + + E A++ H V + W P
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSEE 301
Query: 1089 -----------GRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTG 1235
G FL + D++ ++WD+ ++ GH V + H G +
Sbjct: 302 ENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 361
Query: 1236 GLDAFGRVWDLRTGRCIMFL 1295
D RVWD + RC+ L
Sbjct: 362 ADDKTLRVWDYKNKRCMKTL 381
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = +3
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
L S + D ++K+W + + + + GH V V++H G+F+ + D++ R+WD + +
Sbjct: 316 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 375
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
+ H V + H+ TG +D +VW+ R
Sbjct: 376 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 415
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 2 [Canis familiaris].
Length = 410
Score = 75.1 bits (183), Expect = 1e-13
Identities = 45/171 (26%), Positives = 77/171 (45%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G P++ F P ++ +A K+W + TL+GH +V +S
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV--------QDIS 157
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
D LASC+AD ++KLW E + + GH V+ V P+G + + D++ +
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+W+++ + GH V + +QDG+L + D RVW + T C
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 70.1 bits (170), Expect = 4e-12
Identities = 35/134 (26%), Positives = 67/134 (50%)
Frame = +3
Query: 885 HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
+ L GH + V ++FHP +V + S + D ++K+W ++ + ++GHT V
Sbjct: 102 YALSGHRSPVTRVIFHPVFSV--------MVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 1065 ARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+ + SG+ L + D + +LWD + E I GH V +A+ +G + D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRD 213
Query: 1245 AFGRVWDLRTGRCI 1286
++W+++TG C+
Sbjct: 214 KTIKMWEVQTGYCV 227
Score = 59.3 bits (142), Expect = 8e-09
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 20/195 (10%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G D +S PN + +A K+W V + T GH V V
Sbjct: 190 GHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWV--------RMVR 241
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS-------------- 1088
+Q +ASC+ D +V++W + + E A++ H V + W P
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 1089 ------GRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAF 1250
G FL + D++ ++WD+ ++ GH V + H G + D
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 1251 GRVWDLRTGRCIMFL 1295
RVWD + RC+ L
Sbjct: 362 LRVWDYKNKRCMKTL 376
Score = 52.8 bits (125), Expect = 7e-07
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Frame = +3
Query: 852 KLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN------------LASCAADG 995
++W V LR H V I + P+S+ S + L S + D
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 996 SVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEG 1175
++K+W + + + + GH V V++H G+F+ + D++ R+WD + + +
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 1176 HSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
H V + H+ TG +D +VW+ R
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,623,256
Number of extensions: 1373394
Number of successful extensions: 6719
Number of sequences better than 1.0e-05: 98
Number of HSP's gapped: 5950
Number of HSP's successfully gapped: 216
Length of query: 433
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 327
Effective length of database: 15,340,888
Effective search space: 5016470376
Effective search space used: 5016470376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small ... 674 0.0
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 84 2e-16
Alignment gi|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/... 81 1e-15
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 76 5e-14
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 76 5e-14
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 75 6e-14
Alignment gi|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing p... 74 2e-13
Alignment gi|XP_001929370.2| PREDICTED: transcription initiation factor T... 73 4e-13
Alignment gi|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus ... 72 9e-13
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 70 2e-12
>ref|XP_003353667.1| PREDICTED: LOW QUALITY PROTEIN: u4/U6 small nuclear ribonucleoprotein
Prp4-like [Sus scrofa].
Length = 506
Score = 674 bits (1740), Expect = 0.0
Identities = 338/388 (87%), Positives = 339/388 (87%)
Frame = +3
Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314
PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE
Sbjct: 32 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 91
Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI
Sbjct: 92 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 151
Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674
LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA
Sbjct: 152 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 211
Query: 675 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 854
RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK
Sbjct: 212 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 271
Query: 855 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 1034
LWSVPDCNLLHTLRGHNTNVGAI +SDEPV
Sbjct: 272 LWSVPDCNLLHTLRGHNTNVGAI-------------------------------ESDEPV 300
Query: 1035 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD 1214
ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH EGHSMGVYDIA HQD
Sbjct: 301 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQD 360
Query: 1215 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
GSLAGTGGLDAFGRVWDLRTGRCIMFLE
Sbjct: 361 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 388
Score = 55.5 bits (132), Expect = 7e-08
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +3
Query: 798 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+FSPN +AT CK+W + ++T+ H V + F P L
Sbjct: 398 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFL-------L 450
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+ A D + K+W+ P+ + GH +V + G+ + T YDR+++LW E
Sbjct: 451 TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 506
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 83.6 bits (205), Expect = 2e-16
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + +S FSPN + LA++ L K+W D T+ GH + + + S +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S + D ++K+W + S + + ++GH+ V ++P + + +D S R
Sbjct: 102 -------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+WD++ + + HS V + ++DGSL + D R+WD +G+C+ L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/143 (27%), Positives = 68/143 (47%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD +K+W + I
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEW--------LASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ ++WD+ + + + +GHS V+ + +L
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D R+WD++TG+C+ L
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTL 167
Score = 52.4 bits (124), Expect = 6e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + A KLW L T GH I + T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--- 269
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 270 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 1128 RLW 1136
+LW
Sbjct: 328 KLW 330
Score = 51.6 bits (122), Expect = 9e-07
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ GHT V+ V + P+G +L ++ D+ ++W + GH +G+ D+A D +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 1221 LAGTGGLDAFGRVWDLRTGRCIMFLE 1298
L + D ++WD+ +G+C+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 51.2 bits (121), Expect = 1e-06
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ ++ + GLC++W L TL N V + F P L
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-- 230
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + + GH + + S G+++ + D
Sbjct: 231 ------AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H ++ + L+
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
>ref|XP_001927989.1| PREDICTED: TAF5-like RNA polymerase II p300/CBP-associated
factor-associated factor 65 kDa subunit 5L [Sus scrofa].
Length = 589
Score = 81.3 bits (199), Expect = 1e-15
Identities = 51/182 (28%), Positives = 75/182 (41%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP S A+ +LWS L GH +V
Sbjct: 371 LGSFTNTVLYQGHAYPVWDVDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD 430
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 431 CVKFHPNSNY--------LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKY 482
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + + D SL + +D RVWD+R
Sbjct: 483 LASAGEDQRLKLWDLASGTLFKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNT 542
Query: 1278 RC 1283
C
Sbjct: 543 HC 544
Score = 55.1 bits (131), Expect = 9e-08
Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 24/191 (12%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPD------------------CNLLHTLRGHNTN 911
++ SP SK+LA + KLWS+ C++L + +
Sbjct: 271 LNTAEISPESKLLAAGFDNSCIKLWSLRSKKLKPEPHRVDVSRIHLACDILEEEDDEDDD 330
Query: 912 VGAIV------FHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARV 1073
VG + P + L SC+ D S++ W L S +GH V V
Sbjct: 331 VGTEMKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDV 390
Query: 1074 MWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFG 1253
P + + +DR+ RLW + + GH V + H + + TG D
Sbjct: 391 DISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 1254 RVWDLRTGRCI 1286
R+W + G +
Sbjct: 451 RLWSAQQGNSV 461
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 75.9 bits (185), Expect = 5e-14
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 5/180 (2%)
Frame = +3
Query: 759 CSQI--GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFH 932
C Q+ G R + FSP+SK LA+ W LW V +L L GH ++ + F
Sbjct: 97 CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 156
Query: 933 PKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVA---DIEGHTVRVARVMWHPSGRFLG 1103
P S LA+ + D ++++W L ++EGH ++ + + G L
Sbjct: 157 PSSDC--------LATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLA 207
Query: 1104 TTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+ +D++ +W + ++ +GH V IA DG + G +VWD TGRC
Sbjct: 208 SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRC 267
Score = 69.3 bits (168), Expect = 4e-12
Identities = 46/179 (25%), Positives = 77/179 (43%)
Frame = +3
Query: 756 FCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHP 935
+C G+ ++ FSP+ + L TA G W LL L GH V F P
Sbjct: 17 YCRHRGE---VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSP 73
Query: 936 KSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY 1115
+ AS ++D +++LW + E + ++GH V V + P + L + +
Sbjct: 74 DGRL--------FASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGW 125
Query: 1116 DRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMF 1292
D+ LW++++ + + H GH + TG D+ R+WDLR G +F
Sbjct: 126 DKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 184
Score = 55.1 bits (131), Expect = 9e-08
Identities = 34/119 (28%), Positives = 55/119 (46%)
Frame = +3
Query: 939 STVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYD 1118
ST S D + L + + DG V W S + + GHT V + P GR +T D
Sbjct: 27 STFSPDGQ--RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSD 84
Query: 1119 RSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+ RLWD+ E + +GH V ++ D +GG D +W++++G+ + L
Sbjct: 85 CTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHL 143
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 75.9 bits (185), Expect = 5e-14
Identities = 49/180 (27%), Positives = 80/180 (44%), Gaps = 5/180 (2%)
Frame = +3
Query: 759 CSQI--GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFH 932
C Q+ G R + FSP+SK LA+ W LW V +L L GH ++ + F
Sbjct: 97 CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 156
Query: 933 PKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVA---DIEGHTVRVARVMWHPSGRFLG 1103
P S LA+ + D ++++W L ++EGH ++ + + G L
Sbjct: 157 PSSDC--------LATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLA 207
Query: 1104 TTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+ +D++ +W + ++ +GH V IA DG + G +VWD TGRC
Sbjct: 208 SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRC 267
Score = 69.3 bits (168), Expect = 4e-12
Identities = 46/179 (25%), Positives = 77/179 (43%)
Frame = +3
Query: 756 FCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHP 935
+C G+ ++ FSP+ + L TA G W LL L GH V F P
Sbjct: 17 YCRHRGE---VNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSP 73
Query: 936 KSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY 1115
+ AS ++D +++LW + E + ++GH V V + P + L + +
Sbjct: 74 DGRL--------FASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGW 125
Query: 1116 DRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMF 1292
D+ LW++++ + + H GH + TG D+ R+WDLR G +F
Sbjct: 126 DKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 184
Score = 55.1 bits (131), Expect = 9e-08
Identities = 34/119 (28%), Positives = 55/119 (46%)
Frame = +3
Query: 939 STVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYD 1118
ST S D + L + + DG V W S + + GHT V + P GR +T D
Sbjct: 27 STFSPDGQ--RLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFASTSSD 84
Query: 1119 RSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+ RLWD+ E + +GH V ++ D +GG D +W++++G+ + L
Sbjct: 85 CTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHL 143
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 75.5 bits (184), Expect = 6e-14
Identities = 45/171 (26%), Positives = 77/171 (45%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G P++ F P ++ +A K+W + TL+GH +V +S
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSV--------QDIS 157
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
D LASC+AD ++KLW E + + GH V+ V P+G + + D++ +
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+W+++ + GH V + +QDG+L + D RVW + T C
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 70.1 bits (170), Expect = 3e-12
Identities = 35/134 (26%), Positives = 67/134 (50%)
Frame = +3
Query: 885 HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
+ L GH + V ++FHP +V + S + D ++K+W ++ + ++GHT V
Sbjct: 102 YALSGHRSPVTRVIFHPVFSV--------MVSASEDATIKVWDYETGDFERTLKGHTDSV 153
Query: 1065 ARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+ + SG+ L + D + +LWD + E I GH V +A+ +G + D
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARD 213
Query: 1245 AFGRVWDLRTGRCI 1286
++W+++TG C+
Sbjct: 214 KTIKMWEVQTGYCV 227
Score = 59.7 bits (143), Expect = 3e-09
Identities = 46/195 (23%), Positives = 74/195 (37%), Gaps = 20/195 (10%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G D +S PN + +A K+W V + T GH V V
Sbjct: 190 GHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWV--------RMVR 241
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS-------------- 1088
+Q +ASC+ D +V++W + + E A++ H V + W P
Sbjct: 242 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSET 301
Query: 1089 ------GRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAF 1250
G FL + D++ ++WD+ ++ GH V + H G + D
Sbjct: 302 KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361
Query: 1251 GRVWDLRTGRCIMFL 1295
RVWD + RC+ L
Sbjct: 362 LRVWDYKNKRCMKTL 376
Score = 52.8 bits (125), Expect = 4e-07
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Frame = +3
Query: 852 KLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN------------LASCAADG 995
++W V LR H V I + P+S+ S + L S + D
Sbjct: 259 RVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 996 SVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEG 1175
++K+W + + + + GH V V++H G+F+ + D++ R+WD + + +
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 1176 HSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
H V + H+ TG +D +VW+ R
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>ref|XP_003360272.1| PREDICTED: f-box-like/WD repeat-containing protein TBL1X-like [Sus
scrofa].
Length = 529
Score = 73.6 bits (179), Expect = 2e-13
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 9/142 (6%)
Frame = +3
Query: 888 TLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVA 1067
T +GH V AI + P + LASC+ D ++K+WS+ D V D++ H+ +
Sbjct: 359 TFQGHTNEVNAIKWDPSGML--------LASCSDDMTLKIWSMKQDTCVHDLQAHSKEIY 410
Query: 1068 RVMWHPSGR---------FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ W P+G L + +D + RLWD+E I H VY +A DG
Sbjct: 411 TIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGK 470
Query: 1221 LAGTGGLDAFGRVWDLRTGRCI 1286
+G D +W+ ++G +
Sbjct: 471 YLASGSFDKCVHIWNTQSGSLV 492
Score = 68.9 bits (167), Expect = 6e-12
Identities = 48/215 (22%), Positives = 86/215 (40%), Gaps = 42/215 (19%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPK--- 938
+ ++ ++ ++ + +LAT + G ++W+ D NL TL H + A+ ++ K
Sbjct: 237 VPSNKDVTSLDWNSDGTLLATGSYDGFARIWT-EDGNLASTLGQHKGPIFALKWNKKGNY 295
Query: 939 ---------------------------STVSLD---QKDVNLASCAADGSVKLWSLDSDE 1028
S +LD Q + ASC+ D + + L D
Sbjct: 296 ILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDR 355
Query: 1029 PVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALH 1208
PV +GHT V + W PSG L + D + ++W ++ + + HS +Y I
Sbjct: 356 PVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWS 415
Query: 1209 QDGS---------LAGTGGLDAFGRVWDLRTGRCI 1286
G + + D+ R+WD+ G CI
Sbjct: 416 PTGPATSNPNSNIMLASASFDSTVRLWDVERGVCI 450
>ref|XP_001929370.2| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 662
Score = 72.8 bits (177), Expect = 4e-13
Identities = 46/177 (25%), Positives = 76/177 (42%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
SL++ G + P+ FSP + + +LW+ L GH +V
Sbjct: 433 SLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADV 492
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
FHP S +A+ +AD +V+LW + + V GH + + + P+GR
Sbjct: 493 NCTRFHPNSNY--------VATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGR 544
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWD 1265
FL T D LWD+ + +GH+ V + +DG + +G +D R+WD
Sbjct: 545 FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWD 601
Score = 70.9 bits (172), Expect = 2e-12
Identities = 53/221 (23%), Positives = 86/221 (38%), Gaps = 1/221 (0%)
Frame = +3
Query: 618 RLWIANYSLPRAMKRLEEARL-HKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISY 794
R+W R++K+ + L KE + ++ L+ L G P+
Sbjct: 357 RVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTASELKIL------YGHSGPVYG 410
Query: 795 CHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNL 974
FSP+ L ++ G +LWS+ L +GHN V F P
Sbjct: 411 ASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYY--------F 462
Query: 975 ASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQE 1154
S D +LW+ D +P+ GH V +HP+ ++ T DR+ RLWD+
Sbjct: 463 VSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGN 522
Query: 1155 EILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
+ GH ++ + +G TG D +WD+ G
Sbjct: 523 CVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHG 563
Score = 60.5 bits (145), Expect = 2e-09
Identities = 38/135 (28%), Positives = 57/135 (42%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L L GH+ V F P L S + DG+V+LWSL + + +GH
Sbjct: 398 LKILYGHSGPVYGASFSPDRNY--------LLSSSEDGTVRLWSLQTFTCLVGYKGHNYP 449
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V + P G + + +DR RLW + + + GH V H + + TG
Sbjct: 450 VWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSA 509
Query: 1242 DAFGRVWDLRTGRCI 1286
D R+WD+ G C+
Sbjct: 510 DRTVRLWDVLNGNCV 524
>ref|XP_003358201.1| PREDICTED: notchless protein homolog 1 [Sus scrofa].
Length = 485
Score = 71.6 bits (174), Expect = 9e-13
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Frame = +3
Query: 855 LWS-VPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEP 1031
LWS D L + GH + ++F P S + +AS + D S+KLW + +
Sbjct: 355 LWSPAEDKKPLARMTGHQALINQVLFSPDSRI--------IASASFDKSIKLWDGRTGKY 406
Query: 1032 VADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQ 1211
+A + GH V ++ W R L + D + ++WD++AQ+ GH+ VY +
Sbjct: 407 LASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSP 466
Query: 1212 DGSLAGTGGLDAFGRVW 1262
DG +GG D R+W
Sbjct: 467 DGQRVASGGKDKCLRIW 483
Score = 61.6 bits (148), Expect = 9e-10
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Frame = +3
Query: 972 LASCAADGSVKLWSLDSDE-PVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA 1148
L S + D ++ LWS D+ P+A + GH + +V++ P R + + +D+S +LWD
Sbjct: 344 LVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIIASASFDKSIKLWDGRT 403
Query: 1149 QEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
+ + GH VY IA D L +G D+ +VWD++
Sbjct: 404 GKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVK 444
Score = 60.1 bits (144), Expect = 3e-09
Identities = 36/122 (29%), Positives = 60/122 (49%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G I+ FSP+S+++A+A + KLW L +LRGH V I + S +
Sbjct: 370 GHQALINQVLFSPDSRIIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRL- 428
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S ++D ++K+W + + + AD+ GH V V W P G+ + + D+ R
Sbjct: 429 -------LVSGSSDSTLKVWDVKAQKLAADLPGHADEVYAVDWSPDGQRVASGGKDKCLR 481
Query: 1131 LW 1136
+W
Sbjct: 482 IW 483
Score = 56.6 bits (135), Expect = 3e-08
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Frame = +3
Query: 888 TLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVA 1067
+L GH+ V ++ F P LAS + D +V+ W L ++ P +GH V
Sbjct: 109 SLEGHSEAVISVAFSPTGKY--------LASGSGDTTVRFWDLSTETPHFTCQGHRHWVL 160
Query: 1068 RVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI-LHXEGHSMGVYDIA---LHQDGS--LAG 1229
+ W P G+ L + C + LWD +++ GHS + ++ LH +
Sbjct: 161 SISWSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEPLHANPECRYVA 220
Query: 1230 TGGLDAFGRVWDLRTGRC 1283
+ D RVWD GRC
Sbjct: 221 SSSKDGSVRVWDTTAGRC 238
Score = 49.3 bits (116), Expect = 5e-06
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLL-HTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+SP+ K LA+ C +G LW + L GH+ + A+ + P + + + +A
Sbjct: 164 WSPDGKKLASGCKNGQILLWDPSTGKQVGRALAGHSKWITALSWEP---LHANPECRYVA 220
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEE 1157
S + DGSV++W + + GHT V + W G L + DR+ ++W
Sbjct: 221 SSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDG-LLYSASQDRTIKVWRAHDGVL 279
Query: 1158 ILHXEGHSMGVYDIALHQDGSL 1223
+GH V +AL D +L
Sbjct: 280 CRTLQGHGHWVNTMALSTDYAL 301
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 70.5 bits (171), Expect = 2e-12
Identities = 43/145 (29%), Positives = 71/145 (48%)
Frame = +3
Query: 852 KLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEP 1031
K+W+ +HTL GH + V + H K VS + D ++++W +++ +
Sbjct: 326 KVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR----------DATLRVWDIETGQC 375
Query: 1032 VADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQ 1211
+ + GH V V + GR + + YD ++WD E + + +GH+ VY +L
Sbjct: 376 LHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQF 431
Query: 1212 DGSLAGTGGLDAFGRVWDLRTGRCI 1286
DG +G LD RVWD+ TG CI
Sbjct: 432 DGIHVVSGSLDTSIRVWDVETGNCI 456
Score = 49.3 bits (116), Expect = 5e-06
Identities = 32/102 (31%), Positives = 54/102 (52%)
Frame = +3
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
D ++K+WS + + + + GHT V + G+T DR+ ++W+ E E I
Sbjct: 282 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST--DRTLKVWNAETGECIHTL 339
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
GH+ V + LH+ ++G+ DA RVWD+ TG+C+ L
Sbjct: 340 YGHTSTVRCMHLHEKRVVSGSR--DATLRVWDIETGQCLHVL 379
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,405,023
Number of extensions: 853326
Number of successful extensions: 4087
Number of sequences better than 1.0e-05: 65
Number of HSP's gapped: 3678
Number of HSP's successfully gapped: 138
Length of query: 433
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 331
Effective length of database: 8,804,438
Effective search space: 2914268978
Effective search space used: 2914268978
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus... 752 0.0
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 84 3e-16
Alignment gi|NP_663371.2| transducin beta-like protein 3 [Mus musculus]. 82 7e-16
Alignment gi|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus mus... 82 9e-16
Alignment gi|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [... 80 3e-15
Alignment gi|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated... 80 3e-15
Alignment gi|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [... 80 5e-15
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 79 8e-15
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 79 8e-15
Alignment gi|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus]. 77 4e-14
>ref|NP_081573.1| U4/U6 small nuclear ribonucleoprotein Prp4 [Mus musculus].
Length = 521
Score = 752 bits (1941), Expect = 0.0
Identities = 369/388 (95%), Positives = 370/388 (95%)
Frame = +3
Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314
PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE
Sbjct: 16 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 75
Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI
Sbjct: 76 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 135
Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674
LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA
Sbjct: 136 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 195
Query: 675 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 854
RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK
Sbjct: 196 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 255
Query: 855 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 1034
LWSVPDC+LLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV
Sbjct: 256 LWSVPDCSLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 315
Query: 1035 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD 1214
ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH EGHSMGVYDIA HQD
Sbjct: 316 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQD 375
Query: 1215 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
GSLAGTGGLDAFGRVWDLRTGRCIMFLE
Sbjct: 376 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 403
Score = 55.8 bits (133), Expect = 7e-08
Identities = 32/116 (27%), Positives = 54/116 (46%)
Frame = +3
Query: 798 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+FSPN +AT CK+W + ++T+ H V + F P + D L
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEP---IHGDF----LL 465
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+ A D + K+W+ P+ + GH +V + G+ + T YDR+++LW E
Sbjct: 466 TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 521
Score = 49.7 bits (117), Expect = 5e-06
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 1/155 (0%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F + + T ++W + + L GH + I F P ++A+
Sbjct: 372 FHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG--------YHIAT 423
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP-SGRFLGTTCYDRSWRLWDLEAQEE 1157
+ D + K+W L V I H V V + P G FL T YD + ++W
Sbjct: 424 GSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGAYDNTAKIWTHPGWSP 483
Query: 1158 ILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+ GH V + + DG L T D ++W
Sbjct: 484 LKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 518
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 83.6 bits (205), Expect = 3e-16
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + +S FSPN + LA++ L K+W D T+ GH + + + S +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S + D ++K+W + S + + ++GH+ V ++P + + +D S R
Sbjct: 102 -------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+WD++ + + HS V + ++DGSL + D R+WD +G+C+ L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 70.9 bits (172), Expect = 2e-12
Identities = 39/143 (27%), Positives = 68/143 (47%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD +K+W + I
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEW--------LASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ ++WD+ + + + +GHS V+ + +L
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D R+WD++TG+C+ L
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTL 167
Score = 52.4 bits (124), Expect = 8e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + A KLW L T GH I + T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--- 269
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 270 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 1128 RLW 1136
+LW
Sbjct: 328 KLW 330
Score = 51.6 bits (122), Expect = 1e-06
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ GHT V+ V + P+G +L ++ D+ ++W + GH +G+ D+A D +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 1221 LAGTGGLDAFGRVWDLRTGRCIMFLE 1298
L + D ++WD+ +G+C+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ ++ + GLC++W L TL N V + F P L
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-- 230
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + + GH + + S G+++ + D
Sbjct: 231 ------AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H ++ + L+
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
>ref|NP_663371.2| transducin beta-like protein 3 [Mus musculus].
Length = 801
Score = 82.4 bits (202), Expect = 7e-16
Identities = 50/162 (30%), Positives = 77/162 (47%)
Frame = +3
Query: 777 DRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD 956
D+ I+ SPN K+LAT KLW++P C LL GH + + F P V
Sbjct: 479 DKDINSLAVSPNDKLLATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQV--- 535
Query: 957 QKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLW 1136
LA+ +ADG++KLW+L + EGH V +V + G L ++ D +LW
Sbjct: 536 -----LATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLW 590
Query: 1137 DLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+++ E + + H V+ + Q A TGG D+ +W
Sbjct: 591 TIKSNECVRTLDAHEDKVWGLHCSQLDDHAITGGSDSRIILW 632
Score = 62.0 bits (149), Expect = 1e-09
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 10/169 (5%)
Frame = +3
Query: 822 LATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN---------- 971
L T KLW +P+ L + + G ++ ++T KD+N
Sbjct: 437 LVTGSQDCTVKLWPLPEALLAKSTAADS---GPVLLQAQTTRRCHDKDINSLAVSPNDKL 493
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
LA+ + D + KLW+L + + GH + V + P+ + L T D + +LW L+
Sbjct: 494 LATGSQDRTAKLWALPQCQLLGVFTGHRRGLWNVQFSPTDQVLATASADGTIKLWALQDF 553
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ EGH V +A GS + G D ++W +++ C+ L+
Sbjct: 554 SCLKTFEGHDASVLKVAFVSRGSQLLSSGSDGLLKLWTIKSNECVRTLD 602
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/98 (32%), Positives = 51/98 (52%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP ++LATA G KLW++ D + L T GH+ +V + F + +
Sbjct: 519 GHRRGLWNVQFSPTDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGS-- 576
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
L S +DG +KLW++ S+E V ++ H +V
Sbjct: 577 ------QLLSSGSDGLLKLWTIKSNECVRTLDAHEDKV 608
Score = 56.2 bits (134), Expect = 5e-08
Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ F S +LAT G ++W + H RG V + FHP T L
Sbjct: 111 PVASMAFDATSTLLATGGCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLL--- 167
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
L S A D S+++WSL +A + H V + + G + ++ D+ +WDL
Sbjct: 168 ---LFSSAVDTSIRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDL 224
Query: 1143 ---------------EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
EA + ++GV LH T G RVW+ +G
Sbjct: 225 QSYQTTRTVPVFESVEASVLLPEQPAPALGVKSSGLH-----FLTAGDQGILRVWEAASG 279
Query: 1278 RCI 1286
+C+
Sbjct: 280 QCV 282
Score = 48.9 bits (115), Expect = 9e-06
Identities = 40/170 (23%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRG-HNTNVGAIVFHPKSTVS 950
D I+ SP+ ++L TA + L W+ + + + H V ++ F ST+
Sbjct: 65 DQEDITSFDLSPDDEVLVTASRALLLAQWAWREGTVTRLWKAIHTAPVASMAFDATSTL- 123
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWH--PSGRFLGTTCYDRS 1124
LA+ DG+V++W + G V V +H P+ L ++ D S
Sbjct: 124 -------LATGGCDGAVRVWDIVQHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSAVDTS 176
Query: 1125 WRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
R+W L+ + + H V ++ + G + G D VWDL++
Sbjct: 177 IRVWSLQDRSCLAVLTAHYSAVTSLSFSEGGHTMLSSGRDKICIVWDLQS 226
>ref|NP_083081.2| katanin p80 WD40-containing subunit B1 [Mus musculus].
Length = 658
Score = 82.0 bits (201), Expect = 9e-16
Identities = 48/188 (25%), Positives = 83/188 (44%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
S+ N S G P+ + +++ SG ++W + +L TL GH N+
Sbjct: 49 SINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANI 108
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
++ FHP +AS + D ++KLW + V GH+ V + + P G+
Sbjct: 109 CSLDFHPYGEF--------VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
+L + D + +LWDL A + + GH+ V + H + L +G D R WDL
Sbjct: 161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Query: 1275 GRCIMFLE 1298
+ + +E
Sbjct: 221 FQVVSCIE 228
Score = 72.8 bits (177), Expect = 6e-13
Identities = 38/157 (24%), Positives = 74/157 (47%)
Frame = +3
Query: 810 NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA 989
+ ++LAT LWS+ N + +L GH + P +V L+ + + + +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTS--------PVESVRLNTPEELIVAGSQ 83
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
GS+++W L++ + + + GH + + +HP G F+ + D + +LWD+ + +
Sbjct: 84 SGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY 143
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGR 1280
GHS V + DG + D ++WDL G+
Sbjct: 144 RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180
Score = 55.5 bits (132), Expect = 9e-08
Identities = 36/135 (26%), Positives = 59/135 (43%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L + H +NV ++V K++ L LA+ D V LWS++ + + GHT
Sbjct: 13 LQEIVAHASNVSSLVLG-KASGRL------LATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V V + + S R+WDLEA + + GH + + H G +G
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 1242 DAFGRVWDLRTGRCI 1286
D ++WD+R C+
Sbjct: 126 DTNIKLWDIRRKGCV 140
>ref|NP_083436.2| sperm-associated antigen 16 protein isoform 1 [Mus musculus].
Length = 639
Score = 80.5 bits (197), Expect = 3e-15
Identities = 63/234 (26%), Positives = 97/234 (41%), Gaps = 3/234 (1%)
Frame = +3
Query: 591 EGPN--SLKVARLWIANYSLPRAMKRLEEARLHKEI-PETTRTSQMQELHKSLRSLNNFC 761
EGP SL+ AR + S + K+ E + + P T ++ K LNN
Sbjct: 297 EGPTQKSLREAREEVGYKSKLKNEKKDSEFPVDMQPDPNVTSCTENVSAAKFDYKLNNIF 356
Query: 762 SQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKS 941
+ P+S P L + L K+ +P N+L T GH + FHP
Sbjct: 357 RL--HELPVSCIVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFHPSG 414
Query: 942 TVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDR 1121
+ LA+ + D ++KLW L+ E +EGH V WH G F+ + D
Sbjct: 415 S--------KLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDM 466
Query: 1122 SWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
+ ++WD+ ++ GH+ V I ++ T D VWD RTG+C
Sbjct: 467 TSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKC 520
Score = 61.2 bits (147), Expect = 2e-09
Identities = 41/162 (25%), Positives = 65/162 (40%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKD 965
+S C F P+ LAT+ KLW + TL GHN V + +H
Sbjct: 405 LSGCCFHPSGSKLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDF------ 458
Query: 966 VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+AS + D + K+W ++S+ + GHT V + + P L T D++ +WD
Sbjct: 459 --VASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDAR 516
Query: 1146 AQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
+ GH V D G + + ++WD R
Sbjct: 517 TGKCEQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFR 558
Score = 49.7 bits (117), Expect = 5e-06
Identities = 42/164 (25%), Positives = 62/164 (37%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G ++ F P S +L TA +W +L GH +V F P+ +
Sbjct: 484 GHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKCEQSLYGHMHSVNDATFTPRGHI- 542
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
+ASC A G KLW P+ I+ V + SGR L +
Sbjct: 543 -------IASCDARGVTKLWDFRKLIPIVSIDVGPSSGNEVNFDQSGRVLAQASANGIIH 595
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
L DL++ + I GH V+ + G +GG D R+W
Sbjct: 596 LLDLKSGQ-IHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLW 638
>ref|NP_598727.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L [Mus musculus].
Length = 589
Score = 80.1 bits (196), Expect = 3e-15
Identities = 51/182 (28%), Positives = 76/182 (41%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP S A+ +LWS L GH +V
Sbjct: 371 LGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD 430
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 431 CVKFHPNSNY--------LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKY 482
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + +A D L + +D RVWD+R+
Sbjct: 483 LASAGEDQRLKLWDLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRST 542
Query: 1278 RC 1283
C
Sbjct: 543 CC 544
Score = 52.4 bits (124), Expect = 8e-07
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 24/191 (12%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPD------------------CNLLHTLRGHNTN 911
++ S +SK+LA + KLWS+ C+ L N
Sbjct: 271 LNTAEISSDSKLLAAGFDNSCIKLWSLRSKKLKSEPHHVDTSRIRLACDTLEEEENEEDN 330
Query: 912 VGAIV------FHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARV 1073
G + P + L SC+ D S++ W L S +GH V V
Sbjct: 331 TGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDV 390
Query: 1074 MWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFG 1253
P + + +DR+ RLW + + GH V + H + + TG D
Sbjct: 391 DISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 1254 RVWDLRTGRCI 1286
R+W + G +
Sbjct: 451 RLWSAQQGNSV 461
>ref|NP_080004.1| sperm-associated antigen 16 protein isoform 2 [Mus musculus].
Length = 310
Score = 79.7 bits (195), Expect = 5e-15
Identities = 47/167 (28%), Positives = 72/167 (43%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+S P L + L K+ +P N+L T GH + FHP +
Sbjct: 33 PVSCIVMHPCRDYLISCSEDRLWKMVGLPQGNVLLTGSGHTDWLSGCCFHPSGS------ 86
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
LA+ + D ++KLW L+ E +EGH V WH G F+ + D + ++WD+
Sbjct: 87 --KLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDFVASASLDMTSKIWDV 144
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
++ GH+ V I ++ T D VWD RTG+C
Sbjct: 145 NSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKC 191
Score = 61.2 bits (147), Expect = 2e-09
Identities = 41/162 (25%), Positives = 65/162 (40%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKD 965
+S C F P+ LAT+ KLW + TL GHN V + +H
Sbjct: 76 LSGCCFHPSGSKLATSSGDSTIKLWDLNKGECTLTLEGHNHAVWSCTWHSCGDF------ 129
Query: 966 VNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+AS + D + K+W ++S+ + GHT V + + P L T D++ +WD
Sbjct: 130 --VASASLDMTSKIWDVNSERCRYTLYGHTDSVNSIEFFPFSNILLTASADKTLSVWDAR 187
Query: 1146 AQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
+ GH V D G + + ++WD R
Sbjct: 188 TGKCEQSLYGHMHSVNDATFTPRGHIIASCDARGVTKLWDFR 229
Score = 49.7 bits (117), Expect = 5e-06
Identities = 42/164 (25%), Positives = 62/164 (37%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G ++ F P S +L TA +W +L GH +V F P+ +
Sbjct: 155 GHTDSVNSIEFFPFSNILLTASADKTLSVWDARTGKCEQSLYGHMHSVNDATFTPRGHI- 213
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
+ASC A G KLW P+ I+ V + SGR L +
Sbjct: 214 -------IASCDARGVTKLWDFRKLIPIVSIDVGPSSGNEVNFDQSGRVLAQASANGIIH 266
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
L DL++ + I GH V+ + G +GG D R+W
Sbjct: 267 LLDLKSGQ-IHKLVGHESEVHSVVFSHLGENLYSGGSDGTIRLW 309
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 79.0 bits (193), Expect = 8e-15
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 3/179 (1%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP+SK LA+ W +W V +H L GH ++ + F P S
Sbjct: 108 GHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSD-- 165
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVA---DIEGHTVRVARVMWHPSGRFLGTTCYDR 1121
+LA+ + D +V +W L + PV ++EGHT ++ + + SG L + +D+
Sbjct: 166 ------SLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASG-LLASGSWDK 218
Query: 1122 SWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ +W L +GH++ V +A D + G +VWD TG+C+ L+
Sbjct: 219 TICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLK 277
Score = 64.7 bits (156), Expect = 2e-10
Identities = 39/157 (24%), Positives = 68/157 (43%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
FSP+ + L TA G +W LL L GH V + F P + +AS
Sbjct: 34 FSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRL--------IAS 85
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
++D S++LW + + + ++GH V V + P + L + +D+ +W++++ +
Sbjct: 86 SSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRRV 145
Query: 1161 LHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
GH + TG D+ +WDLR
Sbjct: 146 HLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLR 182
Score = 59.3 bits (142), Expect = 6e-09
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Frame = +3
Query: 900 HNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMW 1079
H+ V F P L D DG V +W S + + GH V +
Sbjct: 25 HHGEVNCSAFSPDGRTLLTASD--------DGCVYVWGTKSGRLLWRLAGHRGPVKSCCF 76
Query: 1080 HPSGRFLGTTCYDRSWRLWDLEAQEEILH-XEGHSMGVYDIALHQDGSLAGTGGLDAFGR 1256
P GR + ++ D S RLWD+ A+ + LH +GH V ++ D +GG D
Sbjct: 77 SPDGRLIASSSSDHSIRLWDV-ARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAI 135
Query: 1257 VWDLRTGRCIMFL 1295
VW++++GR + L
Sbjct: 136 VWEVQSGRRVHLL 148
Score = 50.4 bits (119), Expect = 3e-06
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLW----SVPDCNLLHTLRGHNTNVGAIVFHP 935
+G I FSP S LAT W +W S P + H L GH N+ + +
Sbjct: 149 VGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVS-YHNLEGHTGNISCLCYSA 207
Query: 936 KSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY 1115
LAS + D ++ +W ++ ++GHT+ V + + P L + Y
Sbjct: 208 SGL---------LASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSPDELKLASAGY 258
Query: 1116 DRSWRLWD 1139
R+ ++WD
Sbjct: 259 SRTVKVWD 266
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 79.0 bits (193), Expect = 8e-15
Identities = 51/215 (23%), Positives = 98/215 (45%)
Frame = +3
Query: 651 AMKRLEEARLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLAT 830
A + L R + R + Q+ + +LR + G IS FSPN + LA+
Sbjct: 2 ATEHLPAERAQSLLSAPRREEEPQKPNYALR-----LTLAGHSAAISSVKFSPNGEWLAS 56
Query: 831 ACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLW 1010
+ L +W D N TL GH+ + + + S+ L S + D ++K+W
Sbjct: 57 SAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSS--------RLVSASDDKTLKVW 108
Query: 1011 SLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGV 1190
+ S + + ++GH+ V ++P + + +D S ++W+++ + + HS +
Sbjct: 109 DMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPI 168
Query: 1191 YDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+ + +GSL +G D R+WD +G+C+ L
Sbjct: 169 SAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL 203
Score = 54.3 bits (129), Expect = 2e-07
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 7/175 (4%)
Frame = +3
Query: 795 CHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNL 974
C F+P S ++ + + K+W V L TL H+ + A+ F+ ++ +
Sbjct: 129 CDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSL--------I 180
Query: 975 ASCAADGSVKLWSLDSDEPVADI--EGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEA 1148
S + DG ++W S + + + EG+ V+ V + P+G+++ T D + +LWD
Sbjct: 181 VSGSYDGLCRIWDAASGQCLRTLADEGNPP-VSFVKFSPNGKYILTATLDNTLKLWDYSR 239
Query: 1149 QEEILHXEGHSMGVYDIALHQDGSLAG-----TGGLDAFGRVWDLRTGRCIMFLE 1298
+ GH Y L S+ G +G D +W+L+T + L+
Sbjct: 240 GRCLKTYTGHKNEKY--CLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQ 292
Score = 50.8 bits (120), Expect = 2e-06
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+S+ FSPN K + TA KLW L T GH N +F S
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHK-NEKYCLFASFSVTGRKW- 267
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSWRLW 1136
+ S + D V +W+L + E V ++GHT V HP+ + + D++ ++W
Sbjct: 268 ---VVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324
Score = 48.9 bits (115), Expect = 9e-06
Identities = 40/172 (23%), Positives = 65/172 (37%), Gaps = 12/172 (6%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGH-NTNVGAIVFHPKSTVSLDQ 959
PIS +F+ N ++ + + GLC++W L TL N V + F P L
Sbjct: 167 PISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYIL-- 224
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGH---------TVRVARVMWHPSGRFLGTTC 1112
+ D ++KLW + GH + V W SG
Sbjct: 225 ------TATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGS------ 272
Query: 1113 YDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL--DAFGRVW 1262
D +W+L+ +E + +GH+ V A H ++ + L D +VW
Sbjct: 273 EDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324
>ref|NP_082016.1| POC1 centriolar protein homolog B [Mus musculus].
Length = 476
Score = 76.6 bits (187), Expect = 4e-14
Identities = 48/172 (27%), Positives = 75/172 (43%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G I+ FSPN K +ATA W LWS+ + GH V ++ F P+ +
Sbjct: 16 GHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNL- 74
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
LAS + D +V+LW LD ++ + HT V V + G+ L T D+S +
Sbjct: 75 -------LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIK 127
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCI 1286
+W + Q + H+ V DG L + D ++WD +C+
Sbjct: 128 VWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCV 179
Score = 64.7 bits (156), Expect = 2e-10
Identities = 42/172 (24%), Positives = 77/172 (44%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+ FS + ++L TA K+WS+ L++L H V F P +
Sbjct: 104 PVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRL----- 158
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
+ SC+ D ++K+W + + V + V ++P+G + + D + ++WD+
Sbjct: 159 ---IVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDI 215
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ + H + HS GV ++ H G+ T D ++ DL GR I L+
Sbjct: 216 RMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQ 267
Score = 60.8 bits (146), Expect = 2e-09
Identities = 36/154 (23%), Positives = 70/154 (45%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
FSP+ +++ + K+W + ++ + F+P T +AS
Sbjct: 152 FSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTC--------IAS 203
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
+D +VK+W + ++ + + H+ V + +HP G L T D + ++ DL I
Sbjct: 204 AGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLI 263
Query: 1161 LHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+GH+ V+ ++ +DG L +GG DA +W
Sbjct: 264 YTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIW 297
Score = 53.5 bits (127), Expect = 4e-07
Identities = 35/174 (20%), Positives = 76/174 (43%), Gaps = 1/174 (0%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTV 947
+G ++ FSP +LA+A +LW + + H V ++ F +
Sbjct: 57 VGHKDVVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQL 116
Query: 948 SLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
L + + D S+K+WS+ + + HT V + P GR + + D++
Sbjct: 117 --------LVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTI 168
Query: 1128 RLWDLEAQEEILHXEGHSMGVYD-IALHQDGSLAGTGGLDAFGRVWDLRTGRCI 1286
++WD ++ ++ S+G + + + +G+ + G D ++WD+R + +
Sbjct: 169 KIWD-TTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLL 221
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,953,534
Number of extensions: 1152960
Number of successful extensions: 5386
Number of sequences better than 1.0e-05: 89
Number of HSP's gapped: 4823
Number of HSP's successfully gapped: 187
Length of query: 433
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 329
Effective length of database: 12,493,815
Effective search space: 4110465135
Effective search space used: 4110465135
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Hom... 750 0.0
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 90 4e-18
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 84 4e-16
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 84 4e-16
Alignment gi|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sa... 82 1e-15
Alignment gi|NP_078808.3| sperm-associated antigen 16 protein isoform 1 [... 82 1e-15
Alignment gi|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens]. 80 3e-15
Alignment gi|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated... 79 1e-14
Alignment gi|NP_006444.2| transducin beta-like protein 3 [Homo sapiens]. 77 3e-14
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 77 4e-14
>ref|NP_004688.2| U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens].
Length = 522
Score = 750 bits (1937), Expect = 0.0
Identities = 368/388 (94%), Positives = 369/388 (95%)
Frame = +3
Query: 135 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKEGLKAGIEAGNINITSGEVFEIE 314
PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGK+GLKAGIEAGNINITSGEVFEIE
Sbjct: 17 PDDLVAPVVKKPHIYYGSLEEKERERLAKGESGILGKDGLKAGIEAGNINITSGEVFEIE 76
Query: 315 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 494
EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI
Sbjct: 77 EHISERQAEVLAEFERRKRARQINVSTDDSEVKACLRALGEPITLFGEGPAERRERLRNI 136
Query: 495 LSVVGTDALXXXXXXXXXXXXXXXXYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 674
LSVVGTDAL YQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA
Sbjct: 137 LSVVGTDALKKTKKDDEKSKKSKEEYQQTWYHEGPNSLKVARLWIANYSLPRAMKRLEEA 196
Query: 675 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 854
RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK
Sbjct: 197 RLHKEIPETTRTSQMQELHKSLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCK 256
Query: 855 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV 1034
LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD KDVNLASCAADGSVKLWSLDSDEPV
Sbjct: 257 LWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDPKDVNLASCAADGSVKLWSLDSDEPV 316
Query: 1035 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD 1214
ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILH EGHSMGVYDIA HQD
Sbjct: 317 ADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQD 376
Query: 1215 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
GSLAGTGGLDAFGRVWDLRTGRCIMFLE
Sbjct: 377 GSLAGTGGLDAFGRVWDLRTGRCIMFLE 404
Score = 55.5 bits (132), Expect = 1e-07
Identities = 31/116 (26%), Positives = 52/116 (44%)
Frame = +3
Query: 798 HFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLA 977
+FSPN +AT CK+W + ++T+ H V + F P L
Sbjct: 414 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFL-------L 466
Query: 978 SCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLE 1145
+ A D + K+W+ P+ + GH +V + G+ + T YDR+++LW E
Sbjct: 467 TGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLWMAE 522
Score = 50.4 bits (119), Expect = 4e-06
Identities = 36/155 (23%), Positives = 58/155 (37%), Gaps = 1/155 (0%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
F + + T ++W + + L GH + I F P ++A+
Sbjct: 373 FHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNG--------YHIAT 424
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHP-SGRFLGTTCYDRSWRLWDLEAQEE 1157
+ D + K+W L V I H V V + P G FL T YD + ++W
Sbjct: 425 GSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSP 484
Query: 1158 ILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
+ GH V + + DG L T D ++W
Sbjct: 485 LKTLAGHEGKVMGLDISSDGQLIATCSYDRTFKLW 519
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 90.1 bits (222), Expect = 4e-18
Identities = 46/164 (28%), Positives = 81/164 (49%)
Frame = +3
Query: 804 SPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASC 983
+P +AT + CKLWSV HT RGH + + F+P+ST+ +A+
Sbjct: 144 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTL--------VATG 195
Query: 984 AADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEIL 1163
+ D + KLW + + E V + GH+ + + ++ SG + T +D + +WD + ++
Sbjct: 196 SMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVN 255
Query: 1164 HXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
GH + + + D SL TG +D ++WD G+C+ L
Sbjct: 256 ILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATL 299
Score = 81.6 bits (200), Expect = 1e-15
Identities = 46/171 (26%), Positives = 77/171 (45%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ + + T + CKLW L+TL GH V AI F+ +
Sbjct: 94 PLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFN-------NPY 146
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
+A+ + D + KLWS+++ + GHT + + ++P + T D + +LWD+
Sbjct: 147 GDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDI 206
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+ EE+ GHS + ++ + G TG D VWD TGR + L
Sbjct: 207 QNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNIL 257
Score = 78.2 bits (191), Expect = 2e-14
Identities = 43/165 (26%), Positives = 81/165 (49%)
Frame = +3
Query: 768 IGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTV 947
IG IS F+ + ++ T CKLW + + TL GH+ + F
Sbjct: 258 IGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCF------ 311
Query: 948 SLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
D +A+ +ADG+ +++S + + +A +EGH ++++ ++P G L T D++
Sbjct: 312 --DYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTA 369
Query: 1128 RLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
R+WD + + + EGH+ ++ A + G++ TG D R+W
Sbjct: 370 RIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 72.0 bits (175), Expect = 1e-12
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKS----TVSLDQK-- 962
F+P S ++AT KLW + + ++TLRGH+ + ++ F+ T S D
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244
Query: 963 ----------DVNLASCAA------------------DGSVKLWSLDSDEPVADIEGHTV 1058
++ + CA D + KLW + + VA + GH
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDD 304
Query: 1059 RVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGG 1238
+ + +G+ + T D + R++ ++ I EGH + I+ + G+ TG
Sbjct: 305 EILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGS 364
Query: 1239 LDAFGRVWDLRTGRCIMFLE 1298
D R+WD +TG+C+ LE
Sbjct: 365 SDKTARIWDAQTGQCLQVLE 384
Score = 53.9 bits (128), Expect = 3e-07
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQD-G 1217
++ H + + V + SG T YDR+ +LWD + EE+ EGH VY IA + G
Sbjct: 88 LKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYG 147
Query: 1218 SLAGTGGLDAFGRVWDLRTGRC 1283
TG D ++W + TG+C
Sbjct: 148 DKIATGSFDKTCKLWSVETGKC 169
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 83.6 bits (205), Expect = 4e-16
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + +S FSPN + LA++ L K+W D T+ GH + + + S +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S + D ++K+W + S + + ++GH+ V ++P + + +D S R
Sbjct: 102 -------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+WD++ + + HS V + ++DGSL + D R+WD +G+C+ L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 70.9 bits (172), Expect = 3e-12
Identities = 39/143 (27%), Positives = 68/143 (47%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD +K+W + I
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEW--------LASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ ++WD+ + + + +GHS V+ + +L
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D R+WD++TG+C+ L
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTL 167
Score = 52.4 bits (124), Expect = 9e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + A KLW L T GH I + T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--- 269
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 270 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 1128 RLW 1136
+LW
Sbjct: 328 KLW 330
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ GHT V+ V + P+G +L ++ D+ ++W + GH +G+ D+A D +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 1221 LAGTGGLDAFGRVWDLRTGRCIMFLE 1298
L + D ++WD+ +G+C+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ ++ + GLC++W L TL N V + F P L
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-- 230
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + + GH + + S G+++ + D
Sbjct: 231 ------AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H ++ + L+
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 83.6 bits (205), Expect = 4e-16
Identities = 45/175 (25%), Positives = 84/175 (48%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + +S FSPN + LA++ L K+W D T+ GH + + + S +
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL- 101
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWR 1130
L S + D ++K+W + S + + ++GH+ V ++P + + +D S R
Sbjct: 102 -------LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+WD++ + + HS V + ++DGSL + D R+WD +G+C+ L
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 209
Score = 70.9 bits (172), Expect = 3e-12
Identities = 39/143 (27%), Positives = 68/143 (47%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD +K+W + I
Sbjct: 33 PNYALKFTLAGHTKAVSSVKFSPNGEW--------LASSSADKLIKIWGAYDGKFEKTIS 84
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ ++WD+ + + + +GHS V+ + +L
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D R+WD++TG+C+ L
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTL 167
Score = 52.4 bits (124), Expect = 9e-07
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + A KLW L T GH I + T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT--- 269
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 270 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTI 327
Query: 1128 RLW 1136
+LW
Sbjct: 328 KLW 330
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/86 (26%), Positives = 46/86 (53%)
Frame = +3
Query: 1041 IEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGS 1220
+ GHT V+ V + P+G +L ++ D+ ++W + GH +G+ D+A D +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 1221 LAGTGGLDAFGRVWDLRTGRCIMFLE 1298
L + D ++WD+ +G+C+ L+
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLK 126
Score = 51.2 bits (121), Expect = 2e-06
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ ++ + GLC++W L TL N V + F P L
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL-- 230
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + + GH + + S G+++ + D
Sbjct: 231 ------AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H ++ + L+
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
>ref|NP_005877.2| katanin p80 WD40-containing subunit B1 [Homo sapiens].
Length = 655
Score = 82.0 bits (201), Expect = 1e-15
Identities = 48/188 (25%), Positives = 83/188 (44%)
Frame = +3
Query: 735 SLRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNV 914
S+ N S G P+ + +++ SG ++W + +L TL GH N+
Sbjct: 49 SINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANI 108
Query: 915 GAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGR 1094
++ FHP +AS + D ++KLW + V GH+ V + + P G+
Sbjct: 109 CSLDFHPYGEF--------VASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGK 160
Query: 1095 FLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
+L + D + +LWDL A + + GH+ V + H + L +G D R WDL
Sbjct: 161 WLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEK 220
Query: 1275 GRCIMFLE 1298
+ + +E
Sbjct: 221 FQVVSCIE 228
Score = 72.8 bits (177), Expect = 7e-13
Identities = 38/157 (24%), Positives = 74/157 (47%)
Frame = +3
Query: 810 NSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAA 989
+ ++LAT LWS+ N + +L GH + P +V L+ + + + +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTS--------PVESVRLNTPEELIVAGSQ 83
Query: 990 DGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHX 1169
GS+++W L++ + + + GH + + +HP G F+ + D + +LWD+ + +
Sbjct: 84 SGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRY 143
Query: 1170 EGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGR 1280
GHS V + DG + D ++WDL G+
Sbjct: 144 RGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK 180
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/135 (26%), Positives = 59/135 (43%)
Frame = +3
Query: 882 LHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVR 1061
L + H +NV ++V K++ L LA+ D V LWS++ + + GHT
Sbjct: 13 LQEIVAHASNVSSLVLG-KASGRL------LATGGDDCRVNLWSINKPNCIMSLTGHTSP 65
Query: 1062 VARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGL 1241
V V + + S R+WDLEA + + GH + + H G +G
Sbjct: 66 VESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQ 125
Query: 1242 DAFGRVWDLRTGRCI 1286
D ++WD+R C+
Sbjct: 126 DTNIKLWDIRRKGCV 140
>ref|NP_078808.3| sperm-associated antigen 16 protein isoform 1 [Homo sapiens].
Length = 631
Score = 81.6 bits (200), Expect = 1e-15
Identities = 47/167 (28%), Positives = 74/167 (44%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P+S P+ +L + L K+ +P CN+L T GH + FHP
Sbjct: 354 PVSCVSMQPHKDILVSCGEDRLWKVLGLPKCNVLLTGFGHTDWLSDCCFHPSGD------ 407
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
LA+ + D +VKLW L + + EGH+ V WH G F+ ++ D++ ++WD+
Sbjct: 408 --KLATSSGDTTVKLWDLCKGDCILTFEGHSRAVWSCTWHSCGNFVASSSLDKTSKIWDV 465
Query: 1143 EAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRC 1283
++ GH+ V I + T D +WD RTG C
Sbjct: 466 NSERCRCTLYGHTDSVNSIEFFPFSNTLLTSSADKTLSIWDARTGIC 512
Score = 53.1 bits (126), Expect = 5e-07
Identities = 42/168 (25%), Positives = 64/168 (38%)
Frame = +3
Query: 759 CSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPK 938
C+ G ++ F P S L T+ +W +L GH ++ +F P+
Sbjct: 472 CTLYGHTDSVNSIEFFPFSNTLLTSSADKTLSIWDARTGICEQSLYGHMHSINDAIFDPR 531
Query: 939 STVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYD 1118
+ +ASC A G KLW P+ I+ V + SGR L +
Sbjct: 532 GHM--------IASCDACGVTKLWDFRKLLPIVSIDIGPSPGNEVNFDSSGRVLAQASGN 583
Query: 1119 RSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
L DL++ E I GH + + DG + +GG D R W
Sbjct: 584 GVIHLLDLKSGE-IHKLMGHENEAHTVVFSHDGEILFSGGSDGTVRTW 630
>ref|NP_061942.2| WD repeat-containing protein 5B [Homo sapiens].
Length = 330
Score = 80.5 bits (197), Expect = 3e-15
Identities = 45/179 (25%), Positives = 85/179 (47%)
Frame = +3
Query: 759 CSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPK 938
C+ +G +S FSPN + LA++ L +W D TL GHN + + +
Sbjct: 35 CTLVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSD 94
Query: 939 STVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYD 1118
S+ L S + D ++KLW + S + + ++GH+ V ++P + + +D
Sbjct: 95 SS--------RLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFD 146
Query: 1119 RSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFL 1295
+ ++W+++ + + HS V + + GSL +G D R+WD +G+C+ L
Sbjct: 147 ETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTL 205
Score = 62.0 bits (149), Expect = 1e-09
Identities = 36/143 (25%), Positives = 67/143 (46%)
Frame = +3
Query: 867 PDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIE 1046
P+ L TL GH V ++ F P LAS +AD + +W + +
Sbjct: 29 PNYALKCTLVGHTEAVSSVKFSPNGEW--------LASSSADRLIIIWGAYDGKYEKTLY 80
Query: 1047 GHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLA 1226
GH + ++ V W L + D++ +LWD+ + + + +GHS V+ + +L
Sbjct: 81 GHNLEISDVAWSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLI 140
Query: 1227 GTGGLDAFGRVWDLRTGRCIMFL 1295
+G D ++W+++TG+C+ L
Sbjct: 141 ISGSFDETVKIWEVKTGKCLKTL 163
Score = 57.0 bits (136), Expect = 4e-08
Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 4/180 (2%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G + C+F+P S ++ + + K+W V L TL H+ V A+ F+ ++
Sbjct: 123 GHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCLKTLSAHSDPVSAVHFNCSGSL- 181
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVAD-IEGHTVRVARVMWHPSGRFLGTTCYDRSW 1127
+ S + DG ++W S + + ++ V+ V + P+G+++ T D +
Sbjct: 182 -------IVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTL 234
Query: 1128 RLWDLEAQEEILHXEGHSMGVYDIALH---QDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+LWD + GH Y I + G +G D +W+L+T + L+
Sbjct: 235 KLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 294
Score = 53.9 bits (128), Expect = 3e-07
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSL 953
D+ P+S+ FSPN K + TA KLW L T GH I + T
Sbjct: 209 DNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVT--- 265
Query: 954 DQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCY--DRSW 1127
+ S + D V +W+L + E V ++GHT V HP+ + + D++
Sbjct: 266 --GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALENDKTI 323
Query: 1128 RLW 1136
+LW
Sbjct: 324 KLW 326
Score = 50.4 bits (119), Expect = 4e-06
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTL-RGHNTNVGAIVFHPKSTVSLDQ 959
P+S HF+ + ++ + + GLC++W L TL N V + F P L
Sbjct: 169 PVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYIL-- 226
Query: 960 KDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPS---GRFLGTTCYDRSWR 1130
+ D ++KLW + GH + + S G+++ + D
Sbjct: 227 ------TATLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 280
Query: 1131 LWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLD 1244
+W+L+ +E + +GH+ V A H +L + L+
Sbjct: 281 IWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALE 318
>ref|NP_055224.1| TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L isoform a [Homo sapiens].
Length = 589
Score = 78.6 bits (192), Expect = 1e-14
Identities = 50/182 (27%), Positives = 74/182 (40%)
Frame = +3
Query: 738 LRSLNNFCSQIGDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVG 917
L S N G P+ SP S A+ +LWS L GH +V
Sbjct: 371 LGSFTNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVD 430
Query: 918 AIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRF 1097
+ FHP S LA+ + D +V+LWS V GH V + + P+G++
Sbjct: 431 CVKFHPNSNY--------LATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKY 482
Query: 1098 LGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTG 1277
L + D+ +LWDL + GH+ + + D L + +D RVWD+R
Sbjct: 483 LASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNT 542
Query: 1278 RC 1283
C
Sbjct: 543 YC 544
Score = 54.7 bits (130), Expect = 2e-07
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 24/191 (12%)
Frame = +3
Query: 786 ISYCHFSPNSKMLATACWSGLCKLWSVPD------------------CNLLHTLRGHNTN 911
++ SP+SK+LA + KLWS+ C++L + N
Sbjct: 271 LNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDN 330
Query: 912 VGAIV------FHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARV 1073
G + P + L SC+ D S++ W L S +GH V +
Sbjct: 331 AGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDL 390
Query: 1074 MWHPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFG 1253
P + + +DR+ RLW + + GH V + H + + TG D
Sbjct: 391 DISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 1254 RVWDLRTGRCI 1286
R+W + G +
Sbjct: 451 RLWSAQQGNSV 461
>ref|NP_006444.2| transducin beta-like protein 3 [Homo sapiens].
Length = 808
Score = 77.4 bits (189), Expect = 3e-14
Identities = 47/162 (29%), Positives = 75/162 (46%)
Frame = +3
Query: 777 DRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLD 956
D+ I+ +PN K+LAT KLW++P C LL GH + + F P V
Sbjct: 479 DKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQV--- 535
Query: 957 QKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLW 1136
LA+ +ADG++KLW+L + EGH V +V + G L ++ D +LW
Sbjct: 536 -----LATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLW 590
Query: 1137 DLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
++ E + + H V+ + + A TG D+ +W
Sbjct: 591 TIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILW 632
Score = 59.3 bits (142), Expect = 8e-09
Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 10/169 (5%)
Frame = +3
Query: 822 LATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVN---------- 971
L T KLW +P L N G I+ ++T KD+N
Sbjct: 437 LVTGSQDCTVKLWPLPKALLSKNTAPDN---GPILLQAQTTQRCHDKDINSVAIAPNDKL 493
Query: 972 LASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQ 1151
LA+ + D + KLW+L + + GH + V + P + L T D + +LW L+
Sbjct: 494 LATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVLATASADGTIKLWALQDF 553
Query: 1152 EEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ EGH V +A G+ + G D ++W ++ C+ L+
Sbjct: 554 SCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRTLD 602
Score = 58.5 bits (140), Expect = 1e-08
Identities = 33/98 (33%), Positives = 51/98 (52%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP ++LATA G KLW++ D + L T GH+ +V + F + T
Sbjct: 519 GHRRGLWCVQFSPMDQVLATASADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGT-- 576
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRV 1064
L S +DG VKLW++ ++E V ++ H +V
Sbjct: 577 ------QLLSSGSDGLVKLWTIKNNECVRTLDAHEDKV 608
Score = 58.2 bits (139), Expect = 2e-08
Identities = 44/188 (23%), Positives = 75/188 (39%), Gaps = 20/188 (10%)
Frame = +3
Query: 783 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 962
P++ F P S +LAT G ++W + H RG V + FHP T L
Sbjct: 111 PVATMAFDPTSTLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLL--- 167
Query: 963 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDL 1142
L S A D ++++WSL +A + H V + + G + ++ D+ +WDL
Sbjct: 168 ---LFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDL 224
Query: 1143 EA--------------------QEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVW 1262
++ +E + S G+Y + G+L RVW
Sbjct: 225 QSCQATRTVPVFESVEAAVLLPEEPVSQLGVKSPGLYFLTAGDQGTL----------RVW 274
Query: 1263 DLRTGRCI 1286
+ +G+C+
Sbjct: 275 EAASGQCV 282
Score = 53.1 bits (126), Expect = 5e-07
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 3/170 (1%)
Frame = +3
Query: 774 DDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRG-HNTNVGAIVFHPKSTVS 950
D I+ SP++++L TA + L W+ + ++ + H V + F P ST+
Sbjct: 65 DQEDITAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTL- 123
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMWH--PSGRFLGTTCYDRS 1124
LA+ DG+V++W + G V V +H P+ L ++ D +
Sbjct: 124 -------LATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAA 176
Query: 1125 WRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRT 1274
R+W L+ + + H V +A DG + G D +WDL++
Sbjct: 177 IRVWSLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQS 226
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 77.0 bits (188), Expect = 4e-14
Identities = 49/179 (27%), Positives = 81/179 (45%), Gaps = 3/179 (1%)
Frame = +3
Query: 771 GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVS 950
G R + FSP+S+ LA+ W LW V +L L GH ++ + F P TV+
Sbjct: 103 GHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSP--TVN 160
Query: 951 LDQKDVNLASCAADGSVKLWSLDSDEPVAD---IEGHTVRVARVMWHPSGRFLGTTCYDR 1121
LA+ + D +V +W L P +EGH+ ++ + + SG L + +D+
Sbjct: 161 C------LATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASG-LLASGSWDK 213
Query: 1122 SWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLE 1298
+ +W ++ +GH V IA D + G +VWD TG+C+ L+
Sbjct: 214 TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNTGKCLETLK 272
Score = 62.4 bits (150), Expect = 9e-10
Identities = 42/157 (26%), Positives = 66/157 (42%)
Frame = +3
Query: 801 FSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQKDVNLAS 980
FSP+ +ML T G W LL L GH V F P + AS
Sbjct: 29 FSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHL--------FAS 80
Query: 981 CAADGSVKLWSLDSDEPVADIEGHTVRVARVMWHPSGRFLGTTCYDRSWRLWDLEAQEEI 1160
+ D +V+LW + + + ++GH V V + P R L + +D+ LWD+++ + +
Sbjct: 81 ASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQML 140
Query: 1161 LHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRVWDLR 1271
GH + + TG D+ +WDLR
Sbjct: 141 RLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLR 177
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/132 (24%), Positives = 54/132 (40%)
Frame = +3
Query: 900 HNTNVGAIVFHPKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVMW 1079
H V + F P + L + DG V W S + + + GHT V +
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSE--------DGCVYGWETRSGQLLWRLGGHTGPVKFCRF 71
Query: 1080 HPSGRFLGTTCYDRSWRLWDLEAQEEILHXEGHSMGVYDIALHQDGSLAGTGGLDAFGRV 1259
P G + D + RLWD+ + + +GH V ++ D +GG D +
Sbjct: 72 SPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVML 131
Query: 1260 WDLRTGRCIMFL 1295
WD+++G+ + L
Sbjct: 132 WDVQSGQMLRLL 143
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,695,508
Number of extensions: 1352426
Number of successful extensions: 6548
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 5830
Number of HSP's successfully gapped: 217
Length of query: 433
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 328
Effective length of database: 14,835,944
Effective search space: 4866189632
Effective search space used: 4866189632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008658
(1299 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 377 e-101
>Sscrofa_Chr01
|| Length = 315321322
Score = 377 bits (190), Expect = e-101
Identities = 190/190 (100%)
Strand = Plus / Plus
Query: 294 ggagaagtgtttgaaattgaagagcacatcagtgagcgacaggccgaagtgttagctgaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284662949 ggagaagtgtttgaaattgaagagcacatcagtgagcgacaggccgaagtgttagctgaa 284663008
Query: 354 tttgagagaaggaagcgagcccggcaaatcaatgtttctacagatgactcagaggtcaag 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284663009 tttgagagaaggaagcgagcccggcaaatcaatgtttctacagatgactcagaggtcaag 284663068
Query: 414 gcttgccttagagccctgggggaacccatcacgctttttggagagggtcctgctgaaaga 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284663069 gcttgccttagagccctgggggaacccatcacgctttttggagagggtcctgctgaaaga 284663128
Query: 474 agagaaaggt 483
||||||||||
Sbjct: 284663129 agagaaaggt 284663138
Score = 357 bits (180), Expect = 1e-95
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 116 ggcaaccaaaactaaggcacctgatgacttagtcgctcctgttgtgaagaaaccacacat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284660830 ggcaaccaaaactaaggcacctgatgacttagtcgctcctgttgtgaagaaaccacacat 284660889
Query: 176 ctattatggaagtttggaagaaaaggagagggaacggctggccaaaggagagtctgggat 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284660890 ctattatggaagtttggaagaaaaggagagggaacggctggccaaaggagagtctgggat 284660949
Query: 236 tttgggaaaagaaggacttaaagcaggaattgaagcagggaatattaacataacctctgg 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284660950 tttgggaaaagaaggacttaaagcaggaattgaagcagggaatattaacataacctctgg 284661009
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 896 aggccataacacaaatgtgggagcaattgtcttccatccgaaatccactgtctccttgga 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284670508 aggccataacacaaatgtgggagcaattgtcttccatccgaaatccactgtctccttgga 284670567
Query: 956 ccaaaaagatgtcaatctggcctcttgtgctgctgatggttctgtgaagctttggagcct 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284670568 ccaaaaagatgtcaatctggcctcttgtgctgctgatggttctgtgaagctttggagcct 284670627
Query: 1016 tgacag 1021
||||||
Sbjct: 284670628 tgacag 284670633
Score = 232 bits (117), Expect = 4e-58
Identities = 117/117 (100%)
Strand = Plus / Plus
Query: 1 gacgtaattccgctttgttaggcgcgcggtggatggtctggaacgtagggctcgcctctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284659943 gacgtaattccgctttgttaggcgcgcggtggatggtctggaacgtagggctcgcctctt 284660002
Query: 61 gctgaagcttcgcggcctcggagcccagcatggcttcctcgcgagcctcctccacgg 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284660003 gctgaagcttcgcggcctcggagcccagcatggcttcctcgcgagcctcctccacgg 284660059
Score = 218 bits (110), Expect = 6e-54
Identities = 121/125 (96%)
Strand = Plus / Plus
Query: 1111 gctatgaccgttcatggcgcttatgggatttggaggctcaagaagagattctgcatcang 1170
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 284675162 gctatgaccgttcatggcgcttatgggatttggaggctcaagaagagatcctgcatcagg 284675221
Query: 1171 aaggccacagcatgggtgtgtatgacattgcccttcatcaagatggctctttggctggca 1230
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 284675222 aaggccacagcatgggtgtgtatgacattgccttccatcaagatggctctttggctggca 284675281
Query: 1231 ccggg 1235
|||||
Sbjct: 284675282 ccggg 284675286
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 647 cagggcaatgaaacgcttggaagaggcccgtcttcataaagagattcctgagacaactag 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284667546 cagggcaatgaaacgcttggaagaggcccgtcttcataaagagattcctgagacaactag 284667605
Query: 707 aacctcccagatgcaagagctgcacaagtctctccgg 743
|||||||||||||||||||||||||||||||||||||
Sbjct: 284667606 aacctcccagatgcaagagctgcacaagtctctccgg 284667642
Score = 192 bits (97), Expect = 3e-46
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 743 gtctttgaataatttctgcagtcaaattggggatgatcggcctatttcctactgtcactt 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284668480 gtctttgaataatttctgcagtcaaattggggatgatcggcctatttcctactgtcactt 284668539
Query: 803 tagtcccaattccaaaatgctggccacagcttgttgg 839
|||||||||||||||||||||||||||||||||||||
Sbjct: 284668540 tagtcccaattccaaaatgctggccacagcttgttgg 284668576
Score = 184 bits (93), Expect = 8e-44
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1019 cagtgatgaaccagtggcagatattgaaggccatacagtacgtgtggctcgtgtaatgtg 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284672272 cagtgatgaaccagtggcagatattgaaggccatacagtacgtgtggctcgtgtaatgtg 284672331
Query: 1079 gcatccatcaggacgcttcttaggtaccacctg 1111
|||||||||||||||||||||||||||||||||
Sbjct: 284672332 gcatccatcaggacgcttcttaggtaccacctg 284672364
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 568 agtatcagcaaacctggtaccatgaaggaccaaacagcctgaaggttgctagactgtgga 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284667294 agtatcagcaaacctggtaccatgaaggaccaaacagcctgaaggttgctagactgtgga 284667353
Query: 628 ttgctaattattcactgcccagg 650
|||||||||||||||||||||||
Sbjct: 284667354 ttgctaattattcactgcccagg 284667376
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 1234 ggggactggatgcatttggtcgagtttgggacctgcgcacgggacgttgtatcatgttcc 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284675399 ggggactggatgcatttggtcgagtttgggacctgcgcacgggacgttgtatcatgttcc 284675458
Query: 1294 tcgaag 1299
||||||
Sbjct: 284675459 tcgaag 284675464
Score = 121 bits (61), Expect = 1e-24
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 838 ggagtgggctttgcaagctctggtctgttcctgattgcaatctccttcacactcttcgag 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284670014 ggagtgggctttgcaagctctggtctgttcctgattgcaatctccttcacactcttcgag 284670073
Query: 898 g 898
|
Sbjct: 284670074 g 284670074
Score = 83.8 bits (42), Expect = 2e-13
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 480 aggttaagaaacatcctctcagtggtcggtactgatgccttnnnnnnnnnnnnnnnngat 539
||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 284666787 aggttaagaaacatcctctcagtggtcggtactgatgccttaaaaaagaccaaaaaagat 284666846
Query: 540 gatgagaaatccaagaagtccaaagaagag 569
||||||||||||||||||||||||||||||
Sbjct: 284666847 gatgagaaatccaagaagtccaaagaagag 284666876
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,473,362
Number of extensions: 194
Number of successful extensions: 194
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 13
Length of query: 1299
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1278
Effective length of database: 2,808,413,156
Effective search space: 3589152013368
Effective search space used: 3589152013368
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)