Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002698004.1| PREDICTED: MATH (meprin-associated Traf homo... 686 0.0
Alignment gi|XP_002703109.1| PREDICTED: MATH (meprin-associated Traf homo... 686 0.0
>ref|XP_002698004.1| PREDICTED: MATH (meprin-associated Traf homology) domain containing
family member (math-33)-like [Bos taurus].
Length = 1055
Score = 686 bits (1769), Expect = 0.0
Identities = 331/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 723 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 782
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 783 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 842
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 843 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 902
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEMLITVAHFHKEVFGTFGIPFLL
Sbjct: 903 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLITVAHFHKEVFGTFGIPFLL 962
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 963 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1022
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1023 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1055
>ref|XP_002703109.1| PREDICTED: MATH (meprin-associated Traf homology) domain containing
family member (math-33)-like [Bos taurus].
Length = 1055
Score = 686 bits (1769), Expect = 0.0
Identities = 331/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 723 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 782
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 783 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 842
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 843 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 902
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEMLITVAHFHKEVFGTFGIPFLL
Sbjct: 903 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLITVAHFHKEVFGTFGIPFLL 962
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 963 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1022
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1023 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1055
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 55,196,662
Number of extensions: 1409198
Number of successful extensions: 4233
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4233
Number of HSP's successfully gapped: 2
Length of query: 547
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 440
Effective length of database: 14,140,958
Effective search space: 6222021520
Effective search space used: 6222021520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536979.2| PREDICTED: similar to Ubiquitin carboxyl-termin... 685 0.0
Alignment gi|XP_863641.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 685 0.0
Alignment gi|XP_863665.1| PREDICTED: similar to Ubiquitin carboxyl-termin... 158 1e-38
>ref|XP_536979.2| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 7
(Ubiquitin thiolesterase 7) (Ubiquitin-specific
processing protease 7) (Deubiquitinating enzyme 7)
(Herpesvirus associated ubiquitin-specific protease)
isoform 1 [Canis familiaris].
Length = 1086
Score = 685 bits (1768), Expect = 0.0
Identities = 330/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 754 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 813
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 814 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 873
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 874 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 933
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEML+TVAHFHKEVFGTFGIPFLL
Sbjct: 934 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLL 993
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 994 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1053
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1054 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1086
>ref|XP_863641.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 7
(Ubiquitin thiolesterase 7) (Ubiquitin-specific
processing protease 7) (Deubiquitinating enzyme 7)
(Herpesvirus associated ubiquitin-specific protease)
isoform 2 [Canis familiaris].
Length = 878
Score = 685 bits (1768), Expect = 0.0
Identities = 330/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 546 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 605
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 606 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 665
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 666 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 725
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEML+TVAHFHKEVFGTFGIPFLL
Sbjct: 726 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLL 785
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 786 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 845
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 846 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 878
>ref|XP_863665.1| PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 7
(Ubiquitin thiolesterase 7) (Ubiquitin-specific
processing protease 7) (Deubiquitinating enzyme 7)
(Herpesvirus associated ubiquitin-specific protease)
isoform 3 [Canis familiaris].
Length = 828
Score = 158 bits (400), Expect = 1e-38
Identities = 75/75 (100%), Positives = 75/75 (100%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 754 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 813
Query: 182 LNTDPMLLQFFKSQG 226
LNTDPMLLQFFKSQG
Sbjct: 814 LNTDPMLLQFFKSQG 828
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 57,436,755
Number of extensions: 1409281
Number of successful extensions: 4687
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4687
Number of HSP's successfully gapped: 3
Length of query: 547
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 439
Effective length of database: 15,274,216
Effective search space: 6705380824
Effective search space used: 6705380824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001129152.1| ubiquitin carboxyl-terminal hydrolase 7 [Sus... 685 0.0
>ref|NP_001129152.1| ubiquitin carboxyl-terminal hydrolase 7 [Sus scrofa].
Length = 1103
Score = 685 bits (1767), Expect = 0.0
Identities = 331/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVA+TVAQR
Sbjct: 771 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVARTVAQR 830
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 831 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 890
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 891 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 950
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIP LL
Sbjct: 951 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPLLL 1010
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 1011 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1070
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1071 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1103
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,968,016
Number of extensions: 977248
Number of successful extensions: 2783
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2782
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 443
Effective length of database: 8,754,644
Effective search space: 3878307292
Effective search space used: 3878307292
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001003918.2| ubiquitin carboxyl-terminal hydrolase 7 [Mus... 683 0.0
>ref|NP_001003918.2| ubiquitin carboxyl-terminal hydrolase 7 [Mus musculus].
Length = 1103
Score = 683 bits (1763), Expect = 0.0
Identities = 329/333 (98%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 771 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 830
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 831 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 890
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELG+KASG+LRLLEIVSYKI
Sbjct: 891 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGDKASGRLRLLEIVSYKI 950
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEMLITVAHFHKEVFGTFGIPFLL
Sbjct: 951 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLITVAHFHKEVFGTFGIPFLL 1010
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 1011 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1070
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1071 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1103
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 47,947,422
Number of extensions: 1167366
Number of successful extensions: 3833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3831
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 441
Effective length of database: 12,433,743
Effective search space: 5483280663
Effective search space used: 5483280663
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003461.2| ubiquitin carboxyl-terminal hydrolase 7 [Homo s... 685 0.0
>ref|NP_003461.2| ubiquitin carboxyl-terminal hydrolase 7 [Homo sapiens].
Length = 1102
Score = 685 bits (1768), Expect = 0.0
Identities = 330/333 (99%), Positives = 332/333 (99%)
Frame = +2
Query: 2 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 181
KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR
Sbjct: 770 KDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQR 829
Query: 182 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 361
LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE
Sbjct: 830 LNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFE 889
Query: 362 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 541
NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI
Sbjct: 890 NRRSFKCIWLNSQFREEEITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKI 949
Query: 542 IGVHQEDELLECLSPATSRTFRIEEVPLDQVAIDKENEMLITVAHFHKEVFGTFGIPFLL 721
IGVHQEDELLECLSPATSRTFRIEE+PLDQV IDKENEML+TVAHFHKEVFGTFGIPFLL
Sbjct: 950 IGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLVTVAHFHKEVFGTFGIPFLL 1009
Query: 722 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 901
RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN
Sbjct: 1010 RIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYEVNLKDFEPQPGN 1069
Query: 902 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1000
MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN
Sbjct: 1070 MSHPRPWLGLDHFNKAPKRSRYTYLEKAIKIHN 1102
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 56,347,906
Number of extensions: 1381905
Number of successful extensions: 4347
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4346
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 439
Effective length of database: 14,737,052
Effective search space: 6469565828
Effective search space used: 6469565828
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008661
(1641 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr03 747 0.0
>Sscrofa_Chr03
|| Length = 144787322
Score = 747 bits (377), Expect = 0.0
Identities = 377/377 (100%)
Strand = Plus / Minus
Query: 896 ggtaacatgtctcaccctcggccttggctggggctcgaccacttcaacaaagccccaaag 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687383 ggtaacatgtctcaccctcggccttggctggggctcgaccacttcaacaaagccccaaag 34687324
Query: 956 aggagtcgctacacgtaccttgaaaaggccattaaaatccacaactgactccctgagcgg 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687323 aggagtcgctacacgtaccttgaaaaggccattaaaatccacaactgactccctgagcgg 34687264
Query: 1016 cgggcgaggcgggaccgcggtgggtgtgccctttaccagccgagaactctggtgcccgag 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687263 cgggcgaggcgggaccgcggtgggtgtgccctttaccagccgagaactctggtgcccgag 34687204
Query: 1076 caccgtcggaagtcttgagcgagaggattggctgctggtgtcccttttattttgttgagg 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687203 caccgtcggaagtcttgagcgagaggattggctgctggtgtcccttttattttgttgagg 34687144
Query: 1136 ctgttcagtttggcttccctgtatctattgattgccctttttgagcaaaatgaaggtgtt 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687143 ctgttcagtttggcttccctgtatctattgattgccctttttgagcaaaatgaaggtgtt 34687084
Query: 1196 tttataaagcttggatgccaatgagagttattttaccgtaaccacagttgaaggcgacgg 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687083 tttataaagcttggatgccaatgagagttattttaccgtaaccacagttgaaggcgacgg 34687024
Query: 1256 tcagcgtgctggggaga 1272
|||||||||||||||||
Sbjct: 34687023 tcagcgtgctggggaga 34687007
Score = 605 bits (305), Expect = e-170
Identities = 308/309 (99%)
Strand = Plus / Minus
Query: 1333 aggacgtcttctgttaggctcgtctggcacgttcccccagttatactttgatgacctttt 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34686946 aggacgtcttctgttaggctcgtctggcacgttcccccagttatactttgatgacctttt 34686887
Query: 1393 gtgcatctgtaaaggcgaagcagagaaactcacaacctaataaatagcgctttccttcac 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34686886 gtgcatctgtaaaggcgaagcagagaaactcacaacctaataaatagcgctttccttcac 34686827
Query: 1453 ccgtgtattgtcgccccttcctcggcctccccggctgcctgggtctttttaataactcgt 1512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34686826 ccgtgtattgtcgccccttcctcggcctccccggctgcctgggtctttttaataactcgt 34686767
Query: 1513 ctcacttcgccagccactgctgtcctgcagccccgcctgccaagtggatgcactggacac 1572
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 34686766 ctcacttcgccagccactgctgtcctgcagccccgcctgcaaagtggatgcactggacac 34686707
Query: 1573 cgtcctgacagacactctggggtctttttattcaattggaaacccttaaacacagttaag 1632
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34686706 cgtcctgacagacactctggggtctttttattcaattggaaacccttaaacacagttaag 34686647
Query: 1633 gtgtgtact 1641
|||||||||
Sbjct: 34686646 gtgtgtact 34686638
Score = 309 bits (156), Expect = 3e-81
Identities = 156/156 (100%)
Strand = Plus / Minus
Query: 4 ggatgaccccgaaaatgataacagtgaattacccaccgcaaaggaatatttcagagacct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691991 ggatgaccccgaaaatgataacagtgaattacccaccgcaaaggaatatttcagagacct 34691932
Query: 64 ctatcaccgtgtcgatgtgattttctgtgataaaacaatccccaatgatcctggatttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691931 ctatcaccgtgtcgatgtgattttctgtgataaaacaatccccaatgatcctggatttgt 34691872
Query: 124 agttacattatcaaataggatgaattattttcaggt 159
||||||||||||||||||||||||||||||||||||
Sbjct: 34691871 agttacattatcaaataggatgaattattttcaggt 34691836
Score = 244 bits (123), Expect = 1e-61
Identities = 123/123 (100%)
Strand = Plus / Minus
Query: 612 aggaagtacctttggaccaggtggccatagataaggagaatgagatgctgatcacggtgg 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688194 aggaagtacctttggaccaggtggccatagataaggagaatgagatgctgatcacggtgg 34688135
Query: 672 cgcatttccacaaggaggtattcgggacgttcgggatcccgttcttgctgaggatccacc 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688134 cgcatttccacaaggaggtattcgggacgttcgggatcccgttcttgctgaggatccacc 34688075
Query: 732 agg 734
|||
Sbjct: 34688074 agg 34688072
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 225 gttacagggatggcccaggtaatcctcttagacataattatgaaggtaccttacgagacc 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34690690 gttacagggatggcccaggtaatcctcttagacataattatgaaggtaccttacgagacc 34690631
Query: 285 ttctgcagttcttcaagccgcgacagcctaagaaactttactatcagcag 334
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34690630 ttctgcagttcttcaagccgcgacagcctaagaaactttactatcagcag 34690581
Score = 208 bits (105), Expect = 7e-51
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 411 aggaaataacactatatccagacaagcacggctgcgtccgggacctgctggaggaatgta 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34689754 aggaaataacactatatccagacaagcacggctgcgtccgggacctgctggaggaatgta 34689695
Query: 471 aaaaggccgtggagctcggcgagaaggcgtcagggaaacttaggc 515
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34689694 aaaaggccgtggagctcggcgagaaggcgtcagggaaacttaggc 34689650
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 512 aggctgctagaaattgtaagctacaaaattattggtgtgcatcaagaagatgaactatta 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688917 aggctgctagaaattgtaagctacaaaattattggtgtgcatcaagaagatgaactatta 34688858
Query: 572 gaatgtttgtctcctgcgacgagtcggacatttcgaatagagg 614
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34688857 gaatgtttgtctcctgcgacgagtcggacatttcgaatagagg 34688815
Score = 184 bits (93), Expect = 1e-43
Identities = 96/97 (98%)
Strand = Plus / Minus
Query: 804 agtttaaatttgccattgtgatgatgggccggcaccagtacataaacgaagatgagtatg 863
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 34687753 agtttaaatttgccattgtgatgatgggccggcaccaatacataaacgaagatgagtatg 34687694
Query: 864 aagtaaacttgaaagactttgaacctcagcctggtaa 900
|||||||||||||||||||||||||||||||||||||
Sbjct: 34687693 aagtaaacttgaaagactttgaacctcagcctggtaa 34687657
Score = 163 bits (82), Expect = 4e-37
Identities = 82/82 (100%)
Strand = Plus / Minus
Query: 332 cagcttaagatgaaaatcacagacttcgaaaacaggcggagttttaaatgtatatggtta 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34690493 cagcttaagatgaaaatcacagacttcgaaaacaggcggagttttaaatgtatatggtta 34690434
Query: 392 aacagccaatttagggaagagg 413
||||||||||||||||||||||
Sbjct: 34690433 aacagccaatttagggaagagg 34690412
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 732 agggcgagcatttcagagaagtgatgaagcggattcagagtctgctagacatccaggaga 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34687946 agggcgagcatttcagagaagtgatgaagcggattcagagtctgctagacatccaggaga 34687887
Query: 792 aggagtttgagaag 805
||||||||||||||
Sbjct: 34687886 aggagtttgagaag 34687873
Score = 141 bits (71), Expect = 1e-30
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 155 caggtggcaaagacagttgctcagaggctcaacacagacccgatgctgctccagtttttc 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 34691134 caggtggcaaagacagttgctcagaggctcaacacagacccgatgctgctccagtttttc 34691075
Query: 215 aagtctcaagg 225
|||||||||||
Sbjct: 34691074 aagtctcaagg 34691064
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 45,670,518
Number of extensions: 267
Number of successful extensions: 267
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 11
Length of query: 1641
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1619
Effective length of database: 2,808,408,574
Effective search space: 4546813481306
Effective search space used: 4546813481306
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)