Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068787.1| probable tRNA threonylcarbamoyladenosine bio... 518 e-147
Alignment gi|NP_001192727.1| probable O-sialoglycoprotein endopeptidase 2... 79 4e-15
Alignment gi|XP_002685267.1| PREDICTED: O-sialoglycoprotein endopeptidase... 79 4e-15
>ref|NP_001068787.1| probable tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP
[Bos taurus].
Length = 335
Score = 518 bits (1334), Expect = e-147
Identities = 257/264 (97%), Positives = 262/264 (99%)
Frame = +2
Query: 161 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
MPAVLGFEGSANKIGVGVVRDG VLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA
Sbjct: 1 MPAVLGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 60
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
LTEAGLTS+DIDCIAYTKGPGMGAPLVSVAVVART+AQLWNKPL+GVNHCIGHIEMGRLI
Sbjct: 61 LTEAGLTSEDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLLGVNHCIGHIEMGRLI 120
Query: 521 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 700
TGAT+PTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
Sbjct: 121 TGATNPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 180
Query: 701 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 880
EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM
Sbjct: 181 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 240
Query: 881 LVEITERAMAHCGSQEALIVGRMG 952
LVEITERAMAHCGSQEALIVG +G
Sbjct: 241 LVEITERAMAHCGSQEALIVGGVG 264
>ref|NP_001192727.1| probable O-sialoglycoprotein endopeptidase 2 [Bos taurus].
Length = 414
Score = 79.3 bits (194), Expect = 4e-15
Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 21/270 (7%)
Frame = +2
Query: 170 VLGFEGSANKIGVGVVRD-GTVLANP--RRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
VLG E S + VV + G VL +T V G +P + HR I ++QEA
Sbjct: 39 VLGIETSCDDTAAAVVDEAGNVLGEAIHSQTEVHLKTGGIIPPVAQQLHRENIQRIVQEA 98
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
L+ + ++ ++ +A T PG+ L + + + KP + ++H H RL
Sbjct: 99 LSASEVSPSELSAVATTIKPGLALSLGVGLSFSLQLVDQFKKPFIPIHHMEAHALTIRLT 158
Query: 521 TGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDP---- 682
P VL +SGG+ + + + + G+++DIA G+ LD+ AR L + P
Sbjct: 159 NKVEFPFLVLLISGGHCLLALVRGVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECST 218
Query: 683 -SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDVAQRM-----LATGE- 829
S G IE +AK+G +L + P K D SFSG+ I+ + + + G+
Sbjct: 219 MSGGKAIEHLAKQGNRLHFDFQPPMQRAKNCDFSFSGLQHVIDKMIMQKEKEEGIEQGQV 278
Query: 830 -CTPEDLCFSLQETVFAMLVEITERAMAHC 916
+ D+ ++Q TV + + T RA+ C
Sbjct: 279 LSSAADIAAAVQHTVACHIAKRTHRALLFC 308
>ref|XP_002685267.1| PREDICTED: O-sialoglycoprotein endopeptidase-like 1 [Bos taurus].
Length = 414
Score = 79.3 bits (194), Expect = 4e-15
Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 21/270 (7%)
Frame = +2
Query: 170 VLGFEGSANKIGVGVVRD-GTVLANP--RRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
VLG E S + VV + G VL +T V G +P + HR I ++QEA
Sbjct: 39 VLGIETSCDDTAAAVVDEAGNVLGEAIHSQTEVHLKTGGIIPPVAQQLHRENIQRIVQEA 98
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
L+ + ++ ++ +A T PG+ L + + + KP + ++H H RL
Sbjct: 99 LSASEVSPSELSAVATTIKPGLALSLGVGLSFSLQLVDQFKKPFIPIHHMEAHALTIRLT 158
Query: 521 TGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDP---- 682
P VL +SGG+ + + + + G+++DIA G+ LD+ AR L + P
Sbjct: 159 NKVEFPFLVLLISGGHCLLALVRGVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECST 218
Query: 683 -SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDVAQRM-----LATGE- 829
S G IE +AK+G +L + P K D SFSG+ I+ + + + G+
Sbjct: 219 MSGGKAIEHLAKQGNRLHFDFQPPMQRAKNCDFSFSGLQHVIDKMIMQKEKEEGIEQGQV 278
Query: 830 -CTPEDLCFSLQETVFAMLVEITERAMAHC 916
+ D+ ++Q TV + + T RA+ C
Sbjct: 279 LSSAADIAAAVQHTVACHIAKRTHRALLFC 308
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,225,807
Number of extensions: 1363791
Number of successful extensions: 4593
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4581
Number of HSP's successfully gapped: 3
Length of query: 317
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,306,398
Effective search space: 3075875570
Effective search space used: 3075875570
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536001.2| PREDICTED: similar to O-sialoglycoprotein endop... 73 3e-13
>ref|XP_536001.2| PREDICTED: similar to O-sialoglycoprotein endopeptidase-like 1 [Canis
familiaris].
Length = 582
Score = 73.2 bits (178), Expect = 3e-13
Identities = 74/281 (26%), Positives = 128/281 (45%), Gaps = 26/281 (9%)
Frame = +2
Query: 170 VLGFEGSANKIGVGVVRDGTVL---ANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
+LG E S + VV + + A +T V G +P + HR I +++EA
Sbjct: 210 ILGIETSCDDTAAAVVDESGKVWGEAIHSQTEVHLKTGGIVPPVAQQLHRENIQRIVKEA 269
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPL-VSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRL 517
L+ + ++ ++ IA T PG+ L V ++ R + QL P + ++H H RL
Sbjct: 270 LSTSKISPSELSAIATTVKPGLALSLGVGLSFSLRLVDQL-KIPFIPIHHMEAHALTIRL 328
Query: 518 ITGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDP--- 682
+ P VL +SGG+ + + + + G+++DIA G+ LD+ AR L + P
Sbjct: 329 LNKVEFPFLVLLISGGHCLLALVRGVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECS 388
Query: 683 --SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDVAQRMLATGE----- 829
S G IE +AK+G KL ++ P K D SF+G ++ V R++ E
Sbjct: 389 TMSGGKAIEHLAKQGNKLHFDIKPPMQRAKNCDFSFTG----LQHVTDRIITQKEKEEGI 444
Query: 830 ------CTPEDLCFSLQETVFAMLVEITERAMAHCGSQEAL 934
+ + ++Q T + + T RA+ C ++ L
Sbjct: 445 QKGQILSSAAHIAAAVQHTTACHIAKRTHRAILFCKQRDLL 485
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 44,953,088
Number of extensions: 1394515
Number of successful extensions: 4833
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4825
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,440,896
Effective search space: 3304351744
Effective search space used: 3304351744
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001929285.1| PREDICTED: probable tRNA threonylcarbamoylad... 524 e-149
Alignment gi|XP_003133586.1| PREDICTED: probable tRNA threonylcarbamoylad... 80 1e-15
>ref|XP_001929285.1| PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis
protein OSGEP [Sus scrofa].
Length = 335
Score = 524 bits (1350), Expect = e-149
Identities = 262/264 (99%), Positives = 263/264 (99%)
Frame = +2
Query: 161 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA
Sbjct: 1 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 60
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI
Sbjct: 61 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 120
Query: 521 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 700
TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
Sbjct: 121 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 180
Query: 701 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 880
EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM
Sbjct: 181 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 240
Query: 881 LVEITERAMAHCGSQEALIVGRMG 952
LVEITERAMAHCGSQEALIVG +G
Sbjct: 241 LVEITERAMAHCGSQEALIVGGVG 264
>ref|XP_003133586.1| PREDICTED: probable tRNA threonylcarbamoyladenosine biosynthesis
protein OSGEPL1-like [Sus scrofa].
Length = 414
Score = 80.5 bits (197), Expect = 1e-15
Identities = 75/276 (27%), Positives = 126/276 (45%), Gaps = 21/276 (7%)
Frame = +2
Query: 170 VLGFEGSANKIGVGVVRD-GTVLANP--RRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
VLG E S + VV + G VL +T V G +P + HR I ++QEA
Sbjct: 39 VLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIIPPVAQQLHRENIQRIVQEA 98
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
L+ + ++ ++ +A T PG+ L + + + KP + ++H H RL
Sbjct: 99 LSASKVSPSELSAVATTVKPGLALSLGVGLFFSLQLVDQFKKPFIPIHHMEAHALTIRLT 158
Query: 521 TGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDP---- 682
P VL +SGG+ + + + + G+++DIA G+ LD+ AR L + P
Sbjct: 159 NKVEFPFLVLLISGGHCLLALVRGVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECST 218
Query: 683 -SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDVAQRM-----LATGE- 829
S G IE ++K+G KL + P K D SFSG+ I+ + + G+
Sbjct: 219 MSGGKAIEHLSKQGNKLHFDFKPPMQRAKNCDFSFSGLQHVIDKTIMQKEKEEGIEKGQI 278
Query: 830 -CTPEDLCFSLQETVFAMLVEITERAMAHCGSQEAL 934
+ D+ ++Q TV + + T RA+ C ++ L
Sbjct: 279 LSSAADIAAAVQHTVACHIAKRTHRAILFCKQRDLL 314
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 27,842,985
Number of extensions: 875670
Number of successful extensions: 2990
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2971
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,879,129
Effective search space: 1935650122
Effective search space used: 1935650122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598437.2| probable tRNA threonylcarbamoyladenosine biosyn... 506 e-144
Alignment gi|NP_082367.2| probable tRNA threonylcarbamoyladenosine biosyn... 78 1e-14
>ref|NP_598437.2| probable tRNA threonylcarbamoyladenosine biosynthesis protein Osgep
[Mus musculus].
Length = 335
Score = 506 bits (1304), Expect = e-144
Identities = 250/264 (94%), Positives = 259/264 (98%)
Frame = +2
Query: 161 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVT PGTGFLPGDTARHHRAVILDLLQEA
Sbjct: 1 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTAPGTGFLPGDTARHHRAVILDLLQEA 60
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
LTEAGLTS+DIDCIA+TKGPGMG+PL SVAVVART+AQLWNKPL+GVNHCIGHIEMGRLI
Sbjct: 61 LTEAGLTSKDIDCIAFTKGPGMGSPLASVAVVARTVAQLWNKPLLGVNHCIGHIEMGRLI 120
Query: 521 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 700
TGA +PTVLYVSGGNTQVI+YSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
Sbjct: 121 TGAVNPTVLYVSGGNTQVISYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 180
Query: 701 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 880
EQMAKRGKKLVELPYTVKGMDVSFSGILSFIED AQRMLATGECTPEDLCFSLQETVFAM
Sbjct: 181 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDAAQRMLATGECTPEDLCFSLQETVFAM 240
Query: 881 LVEITERAMAHCGSQEALIVGRMG 952
LVEITERAMAHCGS+EALIVG +G
Sbjct: 241 LVEITERAMAHCGSKEALIVGGVG 264
>ref|NP_082367.2| probable tRNA threonylcarbamoyladenosine biosynthesis protein
Osgepl1 [Mus musculus].
Length = 414
Score = 77.8 bits (190), Expect = 1e-14
Identities = 74/276 (26%), Positives = 121/276 (43%), Gaps = 21/276 (7%)
Frame = +2
Query: 170 VLGFEGSANKIGVGVVRD-GTVLANP--RRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
VLG E S + G VV + G VL +T V G +P + HR I +++E
Sbjct: 39 VLGIETSCDDTGAAVVDETGNVLGEALHSQTQVHLKTGGIVPPVAQQLHRENIQRIVEET 98
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
L+ +T D+ IA T PG+ L + + + KP + ++H H RL
Sbjct: 99 LSACRITPSDLSAIATTIKPGLALSLGVGLSFSLQLVNQFKKPFIPIHHMEAHALTIRLT 158
Query: 521 TGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDP---- 682
P VL +SGG+ + + + + G+++DIA G+ LD+ AR L + P
Sbjct: 159 NKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAPGDMLDKVARRLSLIKHPECST 218
Query: 683 -SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDV-----AQRMLATGE- 829
S G IEQ+AK G + + P K D SF+G+ + + + + G+
Sbjct: 219 MSGGKAIEQLAKDGNRFHFTINPPMQNAKNCDFSFTGLQHITDKLITHKEKEEGIEKGQI 278
Query: 830 -CTPEDLCFSLQETVFAMLVEITERAMAHCGSQEAL 934
+ D+ ++Q L + T RA+ C + L
Sbjct: 279 LSSAADIAAAVQHATACHLAKRTHRAILFCKQKNLL 314
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,498,055
Number of extensions: 1150818
Number of successful extensions: 3957
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3931
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,583,923
Effective search space: 2718127368
Effective search space used: 2718127368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060277.1| probable tRNA threonylcarbamoyladenosine biosyn... 518 e-147
Alignment gi|NP_071748.2| probable tRNA threonylcarbamoyladenosine biosyn... 87 2e-17
>ref|NP_060277.1| probable tRNA threonylcarbamoyladenosine biosynthesis protein OSGEP
[Homo sapiens].
Length = 335
Score = 518 bits (1335), Expect = e-147
Identities = 258/264 (97%), Positives = 261/264 (98%)
Frame = +2
Query: 161 MPAVLGFEGSANKIGVGVVRDGTVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 340
MPAVLGFEGSANKIGVGVVRDG VLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA
Sbjct: 1 MPAVLGFEGSANKIGVGVVRDGKVLANPRRTYVTPPGTGFLPGDTARHHRAVILDLLQEA 60
Query: 341 LTEAGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTIAQLWNKPLVGVNHCIGHIEMGRLI 520
LTE+GLTSQDIDCIAYTKGPGMGAPLVSVAVVART+AQLWNKPLVGVNHCIGHIEMGRLI
Sbjct: 61 LTESGLTSQDIDCIAYTKGPGMGAPLVSVAVVARTVAQLWNKPLVGVNHCIGHIEMGRLI 120
Query: 521 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 700
TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI
Sbjct: 121 TGATSPTVLYVSGGNTQVIAYSEHRYRIFGETIDIAVGNCLDRFARVLKISNDPSPGYNI 180
Query: 701 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAQRMLATGECTPEDLCFSLQETVFAM 880
EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVA RMLATGECTPEDLCFSLQETVFAM
Sbjct: 181 EQMAKRGKKLVELPYTVKGMDVSFSGILSFIEDVAHRMLATGECTPEDLCFSLQETVFAM 240
Query: 881 LVEITERAMAHCGSQEALIVGRMG 952
LVEITERAMAHCGSQEALIVG +G
Sbjct: 241 LVEITERAMAHCGSQEALIVGGVG 264
>ref|NP_071748.2| probable tRNA threonylcarbamoyladenosine biosynthesis protein
OSGEPL1 [Homo sapiens].
Length = 414
Score = 87.0 bits (214), Expect = 2e-17
Identities = 82/288 (28%), Positives = 137/288 (47%), Gaps = 24/288 (8%)
Frame = +2
Query: 143 FLPGSAM--PAVLGFEGSANKIGVGVVRD-GTVLANP--RRTYVTPPGTGFLPGDTARHH 307
F PG+ VLG E S + VV + G VL +T V G +P + H
Sbjct: 28 FHPGTLFLHKIVLGIETSCDDTAAAVVDETGNVLGEAIHSQTEVHLKTGGIVPPAAQQLH 87
Query: 308 RAVILDLLQEALTEAGLTSQDIDCIAYTKGPGMGAPL-VSVAVVARTIAQLWNKPLVGVN 484
R I ++QEAL+ +G++ D+ IA T PG+ L V ++ + + QL KP + ++
Sbjct: 88 RENIQRIVQEALSASGVSPSDLSAIATTIKPGLALSLGVGLSFSLQLVGQL-KKPFIPIH 146
Query: 485 HCIGHIEMGRLITGATSP-TVLYVSGGNTQV-IAYSEHRYRIFGETIDIAVGNCLDRFAR 658
H H RL P VL +SGG+ + + + + G+++DIA G+ LD+ AR
Sbjct: 147 HMEAHALTIRLTNKVEFPFLVLLISGGHCLLALVQGVSDFLLLGKSLDIAPGDMLDKVAR 206
Query: 659 VLKISNDP-----SPGYNIEQMAKRGKKL---VELP-YTVKGMDVSFSGILSFIEDVAQR 811
L + P S G IE +AK+G + ++ P + K D SF+G+ + + +
Sbjct: 207 RLSLIKHPECSTMSGGKAIEHLAKQGNRFHFDIKPPLHHAKNCDFSFTGLQHVTDKIIMK 266
Query: 812 M-----LATGE--CTPEDLCFSLQETVFAMLVEITERAMAHCGSQEAL 934
+ G+ + D+ ++Q T+ LV+ T RA+ C ++ L
Sbjct: 267 KEKEEGIEKGQILSSAADIAATVQHTMACHLVKRTHRAILFCKQRDLL 314
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,243,724
Number of extensions: 1375346
Number of successful extensions: 4371
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4358
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,934,836
Effective search space: 3210989740
Effective search space used: 3210989740
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008664
(952 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 525 e-146
>Sscrofa_Chr07
|| Length = 134764511
Score = 525 bits (265), Expect = e-146
Identities = 265/265 (100%)
Strand = Plus / Plus
Query: 12 ttgtttggtgtcctggtgcgcggttggtagccgcgaactcgttttcttcctttgagacct 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83482540 ttgtttggtgtcctggtgcgcggttggtagccgcgaactcgttttcttcctttgagacct 83482599
Query: 72 ggcttctgcattccagcgcggattggtgaaggctctacggctccagtagtagctaggggc 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83482600 ggcttctgcattccagcgcggattggtgaaggctctacggctccagtagtagctaggggc 83482659
Query: 132 cctgccggcgtttcctcccaggctcggccatgccggcggtgttgggttttgaaggcagcg 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83482660 cctgccggcgtttcctcccaggctcggccatgccggcggtgttgggttttgaaggcagcg 83482719
Query: 192 ccaacaagattggcgtgggagtggtgcgggatggcaccgtgctggcgaaccctcggcgca 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83482720 ccaacaagattggcgtgggagtggtgcgggatggcaccgtgctggcgaaccctcggcgca 83482779
Query: 252 cttacgtcacgcctccgggtacagg 276
|||||||||||||||||||||||||
Sbjct: 83482780 cttacgtcacgcctccgggtacagg 83482804
Score = 357 bits (180), Expect = 7e-96
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 394 aggtcctggtatgggtgccccattggtttctgtggctgttgtggcgcgtactattgccca 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83485067 aggtcctggtatgggtgccccattggtttctgtggctgttgtggcgcgtactattgccca 83485126
Query: 454 gttgtggaataagccattggtgggtgttaaccattgcataggccacattgagatgggccg 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83485127 gttgtggaataagccattggtgggtgttaaccattgcataggccacattgagatgggccg 83485186
Query: 514 cctcatcactggagccaccagcccaactgtgctgtatgtcagtggaggaaatacacaggt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83485187 cctcatcactggagccaccagcccaactgtgctgtatgtcagtggaggaaatacacaggt 83485246
Score = 246 bits (124), Expect = 2e-62
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 274 aggattccttccaggtgatactgccaggcaccacagagctgttatcctggacctgctgca 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83484753 aggattccttccaggtgatactgccaggcaccacagagctgttatcctggacctgctgca 83484812
Query: 334 ggaggcactaacagaggctggattaacttcacaagatattgattgcattgcgtatactaa 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83484813 ggaggcactaacagaggctggattaacttcacaagatattgattgcattgcgtatactaa 83484872
Query: 394 aggt 397
||||
Sbjct: 83484873 aggt 83484876
Score = 194 bits (98), Expect = 6e-47
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 570 aggtgattgcatattcagaacatcgttaccgcatctttggggaaaccatcgatattgctg 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83487608 aggtgattgcatattcagaacatcgttaccgcatctttggggaaaccatcgatattgctg 83487667
Query: 630 tgggtaattgtctggatcgttttgctcgagtcctgaag 667
||||||||||||||||||||||||||||||||||||||
Sbjct: 83487668 tgggtaattgtctggatcgttttgctcgagtcctgaag 83487705
Score = 161 bits (81), Expect = 9e-37
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 717 gaggcaagaagctagttgagctgccatacactgtaaagggcatggacgtctcattctcgg 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83488037 gaggcaagaagctagttgagctgccatacactgtaaagggcatggacgtctcattctcgg 83488096
Query: 777 ggatcttgtctttcattgagg 797
|||||||||||||||||||||
Sbjct: 83488097 ggatcttgtctttcattgagg 83488117
Score = 153 bits (77), Expect = 2e-34
Identities = 89/93 (95%)
Strand = Plus / Plus
Query: 860 caggaaactgtgtttgcaatgctggtagagatcacagagcgggccatggcacattgcggt 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83489155 caggaaactgtgtttgcaatgctggtagagatcacagagcgggccatggcacattgcggt 83489214
Query: 920 tcccaagaagccctcatcgtaggaagaatgggt 952
||||| || ||||||||||||||| || |||||
Sbjct: 83489215 tcccaggaggccctcatcgtaggaggagtgggt 83489247
Score = 137 bits (69), Expect = 1e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 795 aggatgtagcccagcggatgctggccacaggcgagtgtactcctgaggatctatgcttct 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83488976 aggatgtagcccagcggatgctggccacaggcgagtgtactcctgaggatctatgcttct 83489035
Query: 855 ccttgcagg 863
|||||||||
Sbjct: 83489036 ccttgcagg 83489044
Score = 103 bits (52), Expect = 2e-19
Identities = 52/52 (100%)
Strand = Plus / Plus
Query: 666 agatttccaatgacccaagtccaggctacaacattgaacaaatggcaaagcg 717
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83487840 agatttccaatgacccaagtccaggctacaacattgaacaaatggcaaagcg 83487891
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,445,330
Number of extensions: 139
Number of successful extensions: 139
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 8
Length of query: 952
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 931
Effective length of database: 2,808,413,156
Effective search space: 2614632648236
Effective search space used: 2614632648236
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)