Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069216.1| transcriptional repressor CTCF [Bos taurus]. 405 e-131
Alignment gi|XP_002694946.1| PREDICTED: hypothetical protein [Bos taurus]. 65 2e-10
>ref|NP_001069216.1| transcriptional repressor CTCF [Bos taurus].
Length = 727
Score = 405 bits (1041), Expect(2) = e-131
Identities = 206/235 (87%), Positives = 207/235 (88%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEED CHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEGAVAPE EAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGAVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEP+ICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPVICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-131
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
>ref|XP_002694946.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 434
Score = 64.7 bits (156), Expect = 2e-10
Identities = 26/27 (96%), Positives = 27/27 (100%)
Frame = +3
Query: 6 QAHCTAPPPFCVRACGAIKPCAELLLW 86
+AHCTAPPPFCVRACGAIKPCAELLLW
Sbjct: 267 KAHCTAPPPFCVRACGAIKPCAELLLW 293
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 39,299,923
Number of extensions: 922786
Number of successful extensions: 9267
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 9235
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,207,134
Effective search space: 4276347334
Effective search space used: 4276347334
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_864432.1| PREDICTED: similar to Transcriptional repressor... 407 e-132
Alignment gi|XP_536815.2| PREDICTED: similar to Transcriptional repressor... 407 e-132
Alignment gi|XP_534463.2| PREDICTED: similar to CCCTC-binding factor-like... 52 2e-06
>ref|XP_864432.1| PREDICTED: similar to Transcriptional repressor CTCF (CCCTC-binding
factor) (CTCFL paralog) (11-zinc finger protein) isoform
2 [Canis familiaris].
Length = 727
Score = 407 bits (1046), Expect(2) = e-132
Identities = 207/235 (88%), Positives = 207/235 (88%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEG VAPE EAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-132
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
>ref|XP_536815.2| PREDICTED: similar to Transcriptional repressor CTCF (CCCTC-binding
factor) (CTCFL paralog) (11-zinc finger protein) isoform
1 [Canis familiaris].
Length = 727
Score = 407 bits (1046), Expect(2) = e-132
Identities = 207/235 (88%), Positives = 207/235 (88%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEG VAPE EAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-132
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
>ref|XP_534463.2| PREDICTED: similar to CCCTC-binding factor-like protein isoform 1
[Canis familiaris].
Length = 582
Score = 51.6 bits (122), Expect = 2e-06
Identities = 23/44 (52%), Positives = 32/44 (72%)
Frame = +2
Query: 1076 ASKTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
++K K KE VK+TF+C++C YT R S+ +RHMK HT E+PH
Sbjct: 247 STKVQKKAKE-VKRTFRCDICMYTSSRISSFNRHMKIHTAEKPH 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 41,000,128
Number of extensions: 950559
Number of successful extensions: 8479
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 8460
Number of HSP's successfully gapped: 5
Length of query: 406
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 301
Effective length of database: 15,374,224
Effective search space: 4627641424
Effective search space used: 4627641424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355831.1| PREDICTED: transcriptional repressor CTCF-li... 410 e-133
Alignment gi|NP_001103644.1| transcriptional repressor CTCFL [Sus scrofa]. 52 5e-07
>ref|XP_003355831.1| PREDICTED: transcriptional repressor CTCF-like [Sus scrofa].
Length = 335
Score = 410 bits (1055), Expect(2) = e-133
Identities = 209/235 (88%), Positives = 209/235 (88%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-133
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
>ref|NP_001103644.1| transcriptional repressor CTCFL [Sus scrofa].
Length = 647
Score = 52.4 bits (124), Expect = 5e-07
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +2
Query: 1070 HEASKTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
H KT + VK+TFQC++C +T R S+ +RHMK+HT E+PH
Sbjct: 244 HSQKKTKE-----VKRTFQCDICVFTSSRMSSFNRHMKTHTSEKPH 284
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 25,299,317
Number of extensions: 590891
Number of successful extensions: 5052
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5034
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 305
Effective length of database: 8,829,335
Effective search space: 2692947175
Effective search space used: 2692947175
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_851839.1| transcriptional repressor CTCF [Mus musculus]. 402 e-130
>ref|NP_851839.1| transcriptional repressor CTCF [Mus musculus].
Length = 736
Score = 402 bits (1033), Expect(2) = e-130
Identities = 205/235 (87%), Positives = 205/235 (87%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEED CHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEG VAPE EAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQED SWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDSSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-130
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,277,014
Number of extensions: 800830
Number of successful extensions: 9237
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9194
Number of HSP's successfully gapped: 2
Length of query: 406
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 302
Effective length of database: 12,493,815
Effective search space: 3773132130
Effective search space used: 3773132130
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006556.1| transcriptional repressor CTCF isoform 1 [Homo ... 405 e-131
Alignment gi|NP_542185.2| transcriptional repressor CTCFL [Homo sapiens]. 52 1e-06
>ref|NP_006556.1| transcriptional repressor CTCF isoform 1 [Homo sapiens].
Length = 727
Score = 405 bits (1041), Expect(2) = e-131
Identities = 206/235 (87%), Positives = 206/235 (87%)
Frame = +3
Query: 369 TFIKGKERKTYQRRREGGQEEDTCHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 548
TFIKGKERKTYQRRREGGQEED CHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK
Sbjct: 15 TFIKGKERKTYQRRREGGQEEDACHLPQNQTDGGEVVQDVNSSVQMVMMEQLDPTLLQMK 74
Query: 549 TEVMEGAVAPETEAAVDDTQIITLQVVNMEEQPINIGELQLXXXXXXXXXXXXXXXXEEL 728
TEVMEG VAPE EAAVDDTQIITLQVVNMEEQPINIGELQL EEL
Sbjct: 75 TEVMEGTVAPEAEAAVDDTQIITLQVVNMEEQPINIGELQLVQVPVPVTVPVATTSVEEL 134
Query: 729 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 908
QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD
Sbjct: 135 QGAYENEVSKEGLAESEPMICHTLPLPEGFQVVKVGANGEVETLEQGELPPQEDPSWQKD 194
Query: 909 PDYQPPAXXXXXXXXXXLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 1073
PDYQPPA LRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM
Sbjct: 195 PDYQPPAKKTKKTKKSKLRYTEEGKDVDVSVYDFEEEQQEGLLSEVNAEKVVGNM 249
Score = 83.2 bits (204), Expect(2) = e-131
Identities = 37/42 (88%), Positives = 38/42 (90%)
Frame = +2
Query: 1082 KTNKN*KEGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
K K K+GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH
Sbjct: 253 KPTKIKKKGVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 294
>ref|NP_542185.2| transcriptional repressor CTCFL [Homo sapiens].
Length = 663
Score = 52.0 bits (123), Expect = 1e-06
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +2
Query: 1073 EASKTNKN*KE--GVKKTFQCELCSYTCPRRSNLDRHMKSHTDERPH 1207
E +K+ KN ++ G K TF C++C +T R S+ +RHMK+HT E+PH
Sbjct: 239 EKAKSTKNQRKTKGAKGTFHCDVCMFTSSRMSSFNRHMKTHTSEKPH 285
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 40,317,249
Number of extensions: 947787
Number of successful extensions: 11957
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11928
Number of HSP's successfully gapped: 3
Length of query: 406
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 301
Effective length of database: 14,835,944
Effective search space: 4465619144
Effective search space used: 4465619144
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008670
(1220 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|JH118995.1| Sus scrofa unplaced genomic scaffold ChrUScaf4159 1405 0.0
Sscrofa_Chr06 1405 0.0
>gb|JH118995.1| Sus scrofa unplaced genomic scaffold ChrUScaf4159
Length = 85333
Score = 1405 bits (709), Expect = 0.0
Identities = 764/790 (96%)
Strand = Plus / Minus
Query: 316 aggaaggggaaatggaaggtgaggcggttgaagccattgtggaagagtctgaaactttca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71043 aggaaggggaaatggaaggtgaggcggttgaagccattgtggaagagtctgaaactttca 70984
Query: 376 ttaaaggaaaggagagaaagacttaccagagacgccgggaagggggccaggaagaggaca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70983 ttaaaggaaaggagagaaagacttaccagagacgccgggaagggggccaggaagaggaca 70924
Query: 436 cttgccatctaccccagaaccagactgatgggggtgaggtggtccaggatgtcaatagca 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 70923 cttgccatctaccccagaaccagactgatgggggtgaggtggtccaggatgtcaatagta 70864
Query: 496 gtgtacagatggtaatgatggaacagctggatcctacccttcttcagatgaagactgaag 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70863 gtgtacagatggtaatgatggaacagctggatcctacccttcttcagatgaagactgaag 70804
Query: 556 taatggagggtgcagttgcaccagaaacggaggctgctgtggacgatacccagattataa 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70803 taatggagggtgcagttgcaccagaaacggaggctgctgtggacgatacccagattataa 70744
Query: 616 ccttgcaggttgtaaatatggaggaacagcctataaacataggagagctgcagcttgtgc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70743 ccttgcaggttgtaaatatggaggaacagcctataaacataggagagctgcagcttgtgc 70684
Query: 676 aagtacccgttcctgtgacagtacctgttgctaccacttcagtagaagaacttcaggggg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70683 aagtacccgttcctgtgacagtacctgttgctaccacttcagtagaagaacttcaggggg 70624
Query: 736 cttatgagaatgaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcaca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70623 cttatgagaatgaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcaca 70564
Query: 796 ccttgcctttgcctgaagggtttcaagtggtaaaagtgggggccaatggagaggtggaga 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70563 ccttgcctttgcctgaagggtttcaagtggtaaaagtgggggccaatggagaggtggaga 70504
Query: 856 cactagaacaaggggaacttccacctcaggaagatcctagttggcagaaagacccagact 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70503 cactagaacaaggggaacttccacctcaggaagatcctagttggcagaaagacccagact 70444
Query: 916 atcagccaccagccnnnnnnnnnnnnnnnnnnnnnnngagcaaattgcgttacacagagg 975
|||||||||||||| |||||||||||||||||||||||
Sbjct: 70443 atcagccaccagccaaaaaaacaaagaaaaccaaaaagagcaaattgcgttacacagagg 70384
Query: 976 agggcaaagatgtggatgtatctgtctacgattttgaagaagaacaacaggagggcctgc 1035
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 70383 agggcaaagatgtggatgtatctgtctatgattttgaagaagaacaacaggagggcctgc 70324
Query: 1036 tgtcagaggttaatgcagagaaagtggttggtaacatgaagcctccaaaaccaacaaaaa 1095
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 70323 tgtcagaggttaatgcagagaaagtggttggtaacatgaaacctccaaaaccaacaaaaa 70264
Query: 1096 ttaaaaagaa 1105
||||||||||
Sbjct: 70263 ttaaaaagaa 70254
Score = 202 bits (102), Expect = 3e-49
Identities = 114/117 (97%), Gaps = 1/117 (0%)
Strand = Plus / Minus
Query: 1105 aggtgtnaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaa 1164
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69903 aggtgtaaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaa 69844
Query: 1165 tttggatcgacacatgaaaagtcacactgatgagagaccacac-agtgccatctctg 1220
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 69843 tttggatcggcacatgaaaagtcacactgatgagagaccacacaagtgccatctctg 69787
>Sscrofa_Chr06
|| Length = 157765593
Score = 1405 bits (709), Expect = 0.0
Identities = 764/790 (96%)
Strand = Plus / Plus
Query: 316 aggaaggggaaatggaaggtgaggcggttgaagccattgtggaagagtctgaaactttca 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536882 aggaaggggaaatggaaggtgaggcggttgaagccattgtggaagagtctgaaactttca 25536941
Query: 376 ttaaaggaaaggagagaaagacttaccagagacgccgggaagggggccaggaagaggaca 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25536942 ttaaaggaaaggagagaaagacttaccagagacgccgggaagggggccaggaagaggaca 25537001
Query: 436 cttgccatctaccccagaaccagactgatgggggtgaggtggtccaggatgtcaatagca 495
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 25537002 cttgccatctaccccagaaccagactgatgggggtgaggtggtccaggatgtcaatagta 25537061
Query: 496 gtgtacagatggtaatgatggaacagctggatcctacccttcttcagatgaagactgaag 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537062 gtgtacagatggtaatgatggaacagctggatcctacccttcttcagatgaagactgaag 25537121
Query: 556 taatggagggtgcagttgcaccagaaacggaggctgctgtggacgatacccagattataa 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537122 taatggagggtgcagttgcaccagaaacggaggctgctgtggacgatacccagattataa 25537181
Query: 616 ccttgcaggttgtaaatatggaggaacagcctataaacataggagagctgcagcttgtgc 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537182 ccttgcaggttgtaaatatggaggaacagcctataaacataggagagctgcagcttgtgc 25537241
Query: 676 aagtacccgttcctgtgacagtacctgttgctaccacttcagtagaagaacttcaggggg 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537242 aagtacccgttcctgtgacagtacctgttgctaccacttcagtagaagaacttcaggggg 25537301
Query: 736 cttatgagaatgaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcaca 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537302 cttatgagaatgaagtgtctaaagagggccttgcagaaagtgaacccatgatatgtcaca 25537361
Query: 796 ccttgcctttgcctgaagggtttcaagtggtaaaagtgggggccaatggagaggtggaga 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537362 ccttgcctttgcctgaagggtttcaagtggtaaaagtgggggccaatggagaggtggaga 25537421
Query: 856 cactagaacaaggggaacttccacctcaggaagatcctagttggcagaaagacccagact 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25537422 cactagaacaaggggaacttccacctcaggaagatcctagttggcagaaagacccagact 25537481
Query: 916 atcagccaccagccnnnnnnnnnnnnnnnnnnnnnnngagcaaattgcgttacacagagg 975
|||||||||||||| |||||||||||||||||||||||
Sbjct: 25537482 atcagccaccagccaaaaaaacaaagaaaaccaaaaagagcaaattgcgttacacagagg 25537541
Query: 976 agggcaaagatgtggatgtatctgtctacgattttgaagaagaacaacaggagggcctgc 1035
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 25537542 agggcaaagatgtggatgtatctgtctatgattttgaagaagaacaacaggagggcctgc 25537601
Query: 1036 tgtcagaggttaatgcagagaaagtggttggtaacatgaagcctccaaaaccaacaaaaa 1095
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 25537602 tgtcagaggttaatgcagagaaagtggttggtaacatgaaacctccaaaaccaacaaaaa 25537661
Query: 1096 ttaaaaagaa 1105
||||||||||
Sbjct: 25537662 ttaaaaagaa 25537671
Score = 234 bits (118), Expect = 9e-59
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 201 aatggtagcagacctggggccaaagaacaagatgcagtagtggacagattgctgaccagg 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25504706 aatggtagcagacctggggccaaagaacaagatgcagtagtggacagattgctgaccagg 25504765
Query: 261 ggattgagaactgagttctgtttgccctcctcaaactgactttgcaaccacggagagg 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25504766 ggattgagaactgagttctgtttgccctcctcaaactgactttgcaaccacggagagg 25504823
Score = 202 bits (102), Expect = 3e-49
Identities = 114/117 (97%), Gaps = 1/117 (0%)
Strand = Plus / Plus
Query: 1105 aggtgtnaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaa 1164
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25538022 aggtgtaaagaagacattccagtgtgagctttgcagttacacgtgtccacggcgttcaaa 25538081
Query: 1165 tttggatcgacacatgaaaagtcacactgatgagagaccacac-agtgccatctctg 1220
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 25538082 tttggatcggcacatgaaaagtcacactgatgagagaccacacaagtgccatctctg 25538138
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 34,397,694
Number of extensions: 886
Number of successful extensions: 886
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 7
Length of query: 1220
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1199
Effective length of database: 2,808,413,156
Effective search space: 3367287374044
Effective search space used: 3367287374044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)