Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus]. 526 e-149
Alignment gi|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus]. 345 3e-95
Alignment gi|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [B... 306 2e-83
Alignment gi|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos ... 304 9e-83
Alignment gi|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus]. 92 7e-19
Alignment gi|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus]. 65 7e-11
>ref|NP_001096720.1| NADH-cytochrome b5 reductase 3 [Bos taurus].
Length = 301
Score = 526 bits (1354), Expect = e-149
Identities = 259/295 (87%), Positives = 266/295 (90%)
Frame = +3
Query: 78 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 257
MGAQLSTLGHVVLSPVWFLYSL+MKLFQRSTPAITLENPDIKYPLRLIDKEV++HDTRRF
Sbjct: 1 MGAQLSTLGHVVLSPVWFLYSLIMKLFQRSTPAITLENPDIKYPLRLIDKEVISHDTRRF 60
Query: 258 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 437
RFALPSP+HILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK
Sbjct: 61 RFALPSPEHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 120
Query: 438 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 617
FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKS PVIKTVKSVGMIAG
Sbjct: 121 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSDPVIKTVKSVGMIAG 180
Query: 618 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVD 797
GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDI HSARFKLWYTVD
Sbjct: 181 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVD 240
Query: 798 RAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHPK 962
+APEAWDYSQGFVNEEMIRDHL LVLMCGPP +L+RVGHPK
Sbjct: 241 KAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDRVGHPK 295
>ref|NP_001029690.1| NADH-cytochrome b5 reductase 1 [Bos taurus].
Length = 305
Score = 345 bits (885), Expect = 3e-95
Identities = 161/262 (61%), Positives = 203/262 (77%)
Frame = +3
Query: 171 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVI 350
P +TL +P+ KY LRL+DK VNH+T+RFRFALP+ H+LGLPVG+H+YLSARIDG+LVI
Sbjct: 36 PPVTLLDPNEKYQLRLLDKTTVNHNTKRFRFALPTAHHVLGLPVGKHVYLSARIDGSLVI 95
Query: 351 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 530
RPYTPV+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL+S+KIGD +EFRGP+GLL Y
Sbjct: 96 RPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDVVEFRGPSGLLTY 155
Query: 531 QGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 710
GKGKF I+P+KK+ P + +++GMIAGGTGITPMLQ+IRAI+KDP+D T C LLFANQ
Sbjct: 156 AGKGKFNIQPNKKAPPEARVARNLGMIAGGTGITPMLQLIRAILKDPEDPTQCFLLFANQ 215
Query: 711 TEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLV 890
TEKDI H RFKLW+T+D PE W YS+GFV+ +MIR+HL L+
Sbjct: 216 TEKDIILREDLEELQARHPGRFKLWFTLDHPPEGWAYSKGFVSVDMIREHLPAPGEDVLL 275
Query: 891 LMCGPPAHDPVRLPAHLERVGH 956
L+CGPP + L+++G+
Sbjct: 276 LLCGPPPMVQLACHPSLDKLGY 297
>ref|XP_002693169.1| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 478
Score = 306 bits (784), Expect = 2e-83
Identities = 147/262 (56%), Positives = 184/262 (70%)
Frame = +3
Query: 177 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 356
ITL+N D KYPL LI+KE ++H+TRRFRF LPS H LGLPVG +++L A IDG LV+R
Sbjct: 211 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDGVLVVRA 270
Query: 357 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 536
YTPVSSDDD GFVDL+IK+YFK+ HP +P GGKM+QYLE+MKIGDTI F+GP+G L Y G
Sbjct: 271 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 330
Query: 537 KGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 716
GKF +P K S P K V +GMIAGGTGITPMLQ+IR I + P D TV L+FANQTE
Sbjct: 331 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 390
Query: 717 KDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLM 896
+DI H +F LWYT+DR P W YS GF+ ++MI++HL L+L+
Sbjct: 391 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 450
Query: 897 CGPPAHDPVRLPAHLERVGHPK 962
CGP +L+++G+ K
Sbjct: 451 CGPLPLIQTAAHPNLKKLGYTK 472
>ref|XP_617111.4| PREDICTED: cytochrome b5 reductase 2-like [Bos taurus].
Length = 479
Score = 304 bits (778), Expect = 9e-83
Identities = 146/262 (55%), Positives = 183/262 (69%)
Frame = +3
Query: 177 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 356
ITL+N D KYPL LI+KE ++H+TRRFRF LPS H LGLPVG +++L A ID LV+R
Sbjct: 212 ITLQNSDTKYPLPLIEKEQISHNTRRFRFGLPSLDHALGLPVGNYVHLLAEIDSVLVVRA 271
Query: 357 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 536
YTPVSSDDD GFVDL+IK+YFK+ HP +P GGKM+QYLE+MKIGDTI F+GP+G L Y G
Sbjct: 272 YTPVSSDDDLGFVDLIIKIYFKNVHPNYPEGGKMTQYLENMKIGDTILFQGPSGCLFYHG 331
Query: 537 KGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 716
GKF +P K S P K V +GMIAGGTGITPMLQ+IR I + P D TV L+FANQTE
Sbjct: 332 SGKFVFKPYKTSEPETKLVHHLGMIAGGTGITPMLQLIRCIARKPSDKTVMSLIFANQTE 391
Query: 717 KDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLM 896
+DI H +F LWYT+DR P W YS GF+ ++MI++HL L+L+
Sbjct: 392 EDILMRNELEEIARTHPTQFNLWYTLDRPPVDWKYSSGFITKDMIKEHLPPPGKSTLILV 451
Query: 897 CGPPAHDPVRLPAHLERVGHPK 962
CGP +L+++G+ K
Sbjct: 452 CGPLPLIQTAAHPNLKKLGYTK 473
>ref|NP_001033248.1| cytochrome b5 reductase 4 [Bos taurus].
Length = 520
Score = 92.0 bits (227), Expect = 7e-19
Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 4/235 (1%)
Frame = +3
Query: 213 RLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGF 392
+L+ KE V HDT+ F LP H L +PVGQH+YL I G +++PYTPV F
Sbjct: 278 QLVSKEDVTHDTKLFCLMLPPSTH-LEVPVGQHVYLRLPITGTEIVKPYTPVCDSLFSEF 336
Query: 393 VDLVI--KVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDK 566
+ V+ +Y +PA G + L+ ++IGD + P G +
Sbjct: 337 KEPVLPNNIYIYFLIKIYPA-GFFTPELDQLQIGDYVSVSNPEGNFIIS----------- 384
Query: 567 KSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXX 746
++ ++ + ++A GTG TPM++V+ + + L+F N+TE DI
Sbjct: 385 ----QLQELEDLFLLAAGTGFTPMVKVLNYALTNIPSLRKVKLMFFNKTEDDI-IWRSQL 439
Query: 747 XXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHL--XXXXXXXLVLMCGP 905
RF++ + + W QG+++ ++ + L L+ +CGP
Sbjct: 440 EKLAFKDKRFEVEFVLSAPTSEWSGKQGYISPALLSEFLKRRSDTSKVLICLCGP 494
>ref|NP_001098867.1| cytochrome b5 reductase-like [Bos taurus].
Length = 195
Score = 65.5 bits (158), Expect = 7e-11
Identities = 44/132 (33%), Positives = 68/132 (51%)
Frame = +3
Query: 138 SLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIY 317
SLL + +S P+ + + + +D+ + DT RFALP LGL GQH+
Sbjct: 56 SLLSREETQSCPSKLSPETFLAFLISAVDR--LTEDTYLVRFALPGNSQ-LGLRPGQHLI 112
Query: 318 LSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTI 497
L +D + R YTP+S + +G+ +++IK Y G MS+Y++S K GDT
Sbjct: 113 LRGTVDDLEIQRAYTPISPANAEGYFEVLIKCY---------QTGLMSRYVKSWKAGDTA 163
Query: 498 EFRGPNGLLVYQ 533
+RGP G Y+
Sbjct: 164 FWRGPFGGFFYK 175
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 40,989,608
Number of extensions: 1334339
Number of successful extensions: 5751
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5659
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 221
Effective length of database: 14,306,398
Effective search space: 3161713958
Effective search space used: 3161713958
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus ... 518 e-147
Alignment gi|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoredu... 335 3e-92
Alignment gi|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b... 298 7e-81
Alignment gi|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polyp... 107 2e-23
Alignment gi|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxido... 90 3e-18
Alignment gi|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b... 80 3e-15
>ref|NP_001041549.1| NADH-cytochrome b5 reductase 3 [Canis lupus familiaris].
Length = 301
Score = 518 bits (1334), Expect = e-147
Identities = 255/295 (86%), Positives = 265/295 (89%)
Frame = +3
Query: 78 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 257
MGAQLSTLGHVVLSPVWFLY+LLMKLFQRSTPAITLE+PDIKYPLRLIDKEV+NHDTRRF
Sbjct: 1 MGAQLSTLGHVVLSPVWFLYNLLMKLFQRSTPAITLESPDIKYPLRLIDKEVINHDTRRF 60
Query: 258 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 437
RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK
Sbjct: 61 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 120
Query: 438 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 617
FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKS+P+IKTVKSVGMIAG
Sbjct: 121 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSNPIIKTVKSVGMIAG 180
Query: 618 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVD 797
GTGITPMLQVIRAI+KDP D TVCHLLFANQTEKDI HSARFKLWYTVD
Sbjct: 181 GTGITPMLQVIRAIIKDPHDPTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVD 240
Query: 798 RAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHPK 962
+APEAWDYSQGFVNEEMIRDHL L+LMCGPP +L+RVGHPK
Sbjct: 241 KAPEAWDYSQGFVNEEMIRDHLPPPEEEPLILMCGPPPMIQYACLPNLDRVGHPK 295
>ref|XP_848311.1| PREDICTED: similar to NAD(P)H:quinone oxidoreductase type 3,
polypeptide A2 isoform 1 [Canis familiaris].
Length = 305
Score = 335 bits (860), Expect = 3e-92
Identities = 168/292 (57%), Positives = 215/292 (73%), Gaps = 1/292 (0%)
Frame = +3
Query: 84 AQLSTLGHVVLSPVWF-LYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFR 260
A L++LG +L+ + L S L + +R P +TL +PD KY LRL+D+ V+H+T+RFR
Sbjct: 8 ALLASLGVGLLTVLGLALGSYLARRSRR--PKVTLLDPDEKYLLRLLDRTTVSHNTKRFR 65
Query: 261 FALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKF 440
FALPS H+LGLPVG+H+YLSARIDG+LVIRPYTPV+SD+D G+VDLVIKVY K HPKF
Sbjct: 66 FALPSAHHVLGLPVGKHVYLSARIDGSLVIRPYTPVTSDEDLGYVDLVIKVYMKGVHPKF 125
Query: 441 PAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGG 620
P GGKMSQYL S+KIGD +EFRGP+GLL Y G+G F I+P+KKS P + K +GMIAGG
Sbjct: 126 PDGGKMSQYLNSLKIGDVVEFRGPSGLLTYTGRGNFNIQPNKKSPPEPQVAKKLGMIAGG 185
Query: 621 TGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDR 800
TGITPMLQ+I+AI+KDP+D T C LLFANQTEKDI + RFKLW+T+D
Sbjct: 186 TGITPMLQLIQAILKDPEDPTQCSLLFANQTEKDIILREDLEELQARYPNRFKLWFTLDH 245
Query: 801 APEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGH 956
PE W YS+GFV +MIR+HL L+L+CGPP + +L+++G+
Sbjct: 246 PPEDWAYSKGFVTADMIREHLPAPGDDVLLLLCGPPPMVQLACHPNLDKLGY 297
>ref|XP_542485.2| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1 [Canis
familiaris].
Length = 636
Score = 298 bits (762), Expect = 7e-81
Identities = 143/262 (54%), Positives = 184/262 (70%)
Frame = +3
Query: 177 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 356
ITL++ + KY L LI+KE ++H+T RFRF LPS H+LGLP+G +++L A+IDG +V+R
Sbjct: 369 ITLQDSEAKYLLPLIEKEQISHNTWRFRFGLPSSDHVLGLPIGNYVHLLAKIDGVMVVRA 428
Query: 357 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 536
YTPVSSDDD+GFVDL+IKVYFK+ HP +P GGKM+QYLE+MKIGDTI FRGP G L Y G
Sbjct: 429 YTPVSSDDDRGFVDLIIKVYFKNVHPNYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNG 488
Query: 537 KGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 716
G F+I+P K S P K V +GMIAGGTGITPMLQ+IR I K+P+D T L+FANQTE
Sbjct: 489 PGNFSIKPYKTSEPEKKLVSHLGMIAGGTGITPMLQLIRHITKNPNDRTRMSLIFANQTE 548
Query: 717 KDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLM 896
+DI H +F LWYT+DR P W YS G++ MI++HL L+L+
Sbjct: 549 EDILVRRELEEVARTHPDQFDLWYTLDRPPVGWKYSSGYITANMIKEHLPPPGQSTLILV 608
Query: 897 CGPPAHDPVRLPAHLERVGHPK 962
CGP +LE++G+ K
Sbjct: 609 CGPMPLIQTAAHPNLEKLGYTK 630
>ref|NP_001153897.1| NAD(P)H:quinone oxidoreductase type 3, polypeptide A2 [Canis lupus
familiaris].
Length = 115
Score = 107 bits (267), Expect = 2e-23
Identities = 51/107 (47%), Positives = 69/107 (64%)
Frame = +3
Query: 636 MLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAW 815
MLQ+I+AI+KDP+D T C LLFANQTEKDI + RFKLW+T+D PE W
Sbjct: 1 MLQLIQAILKDPEDPTQCSLLFANQTEKDIILREDLEELQARYPNRFKLWFTLDHPPEDW 60
Query: 816 DYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGH 956
YS+GFV +MIR+HL L+L+CGPP + +L+++G+
Sbjct: 61 AYSKGFVTADMIREHLPAPGDDVLLLLCGPPPMVQLACHPNLDKLGY 107
>ref|XP_532219.2| PREDICTED: similar to NADPH cytochrome B5 oxidoreductase [Canis
familiaris].
Length = 485
Score = 90.1 bits (222), Expect = 3e-18
Identities = 62/229 (27%), Positives = 104/229 (45%)
Frame = +3
Query: 213 RLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGF 392
+LI KE V HDT+ F LP H L +P+GQH+YL I G +++PYTPVS
Sbjct: 244 QLISKECVTHDTKLFCLMLPPSTH-LQVPIGQHVYLKLTITGTEIVKPYTPVSDFLLSEL 302
Query: 393 VDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKS 572
+ V+ + K A G + L+ ++IGD + P +G F I
Sbjct: 303 KEPVLNNKYIYFLIKIYAAGLFTPELDHLQIGDFVSVSNP--------EGNFKISQ---- 350
Query: 573 SPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXX 752
+ ++ + ++A GTG TPM++++ + + L+F N+TE DI
Sbjct: 351 ---FQELEDLFLLAAGTGFTPMVKILNYALTNIPSLRKVKLMFFNKTEDDI-IWRSQLEK 406
Query: 753 XXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMC 899
RF++ + + W+ QG ++ ++ + L VL+C
Sbjct: 407 LAFKDKRFQVEFVLSAPTSEWNGKQGHISPGLLSEFLKRSLDRSKVLIC 455
>ref|XP_853222.1| PREDICTED: similar to cytochrome b5 reductase b5R.2 isoform 1
[Canis familiaris].
Length = 314
Score = 80.1 bits (196), Expect = 3e-15
Identities = 63/244 (25%), Positives = 111/244 (45%), Gaps = 6/244 (2%)
Frame = +3
Query: 189 NPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPV 368
+P+ R+ + + DT R RFA+P LGL GQH+ L ++D + R YTP+
Sbjct: 72 SPETFLAFRISAMDRLTEDTYRVRFAVPRNSQ-LGLRPGQHLILRGKVDDLEIQRAYTPI 130
Query: 369 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKF 548
S + +G+ +++IK Y G MS+Y++S GDT +RGP G F
Sbjct: 131 SPANAEGYFEVLIKCY---------ETGLMSRYVKSWSTGDTTFWRGP--------FGDF 173
Query: 549 AIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIX 728
+P++ + M+A GTG+ PM+ V+++I + +D T L+ +T + I
Sbjct: 174 FYKPNQHGELL--------MLASGTGLAPMVPVLQSITDNAEDETFVTLVGCFKTFEGIY 225
Query: 729 XXXXXXXXXXXHSARFKLWYTVDRAPE--AWDYSQ----GFVNEEMIRDHLXXXXXXXLV 890
+ R + + + E W Y + G + +++I + +
Sbjct: 226 LKTFLQEQARFWNVRTFFVLSQENSLEKLPWSYREKTRFGRLAQDLIEELVSSCRRKPFA 285
Query: 891 LMCG 902
L+CG
Sbjct: 286 LVCG 289
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 42,771,312
Number of extensions: 1366724
Number of successful extensions: 5503
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5411
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 220
Effective length of database: 15,440,896
Effective search space: 3396997120
Effective search space used: 3396997120
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-li... 533 e-152
Alignment gi|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa]. 343 1e-94
Alignment gi|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [S... 93 3e-19
Alignment gi|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochr... 74 9e-14
>ref|XP_003126030.1| PREDICTED: NADH-cytochrome b5 reductase 3-like [Sus scrofa].
Length = 301
Score = 533 bits (1374), Expect = e-152
Identities = 265/295 (89%), Positives = 267/295 (90%)
Frame = +3
Query: 78 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 257
MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF
Sbjct: 1 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 60
Query: 258 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 437
RFALPSPQH+LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK
Sbjct: 61 RFALPSPQHVLGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 120
Query: 438 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 617
FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG
Sbjct: 121 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 180
Query: 618 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVD 797
GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDI HSARFKLWYTVD
Sbjct: 181 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNEHSARFKLWYTVD 240
Query: 798 RAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHPK 962
RAPEAWDYSQGFVNEEMIRDHL LVLMCGPP +LERVGHPK
Sbjct: 241 RAPEAWDYSQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLERVGHPK 295
>ref|NP_001230847.1| cytochrome b5 reductase 1 [Sus scrofa].
Length = 305
Score = 343 bits (879), Expect = 1e-94
Identities = 168/290 (57%), Positives = 219/290 (75%), Gaps = 1/290 (0%)
Frame = +3
Query: 90 LSTLGHVVLSPVWFLYSLLMKLFQRST-PAITLENPDIKYPLRLIDKEVVNHDTRRFRFA 266
L++LG +LS F +L L +RS P +TL +P+ KY LRL+DK VNH+T++FRFA
Sbjct: 10 LASLGVGLLS--LFGLALGSYLLRRSRRPLVTLLDPNEKYLLRLLDKTTVNHNTKKFRFA 67
Query: 267 LPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPA 446
LP+ H+LGLPVG+H+YLSARIDG+LVIRPYTP++SD+D+G+VDLVIKVY K HPKFP
Sbjct: 68 LPTAHHVLGLPVGKHVYLSARIDGSLVIRPYTPITSDEDQGYVDLVIKVYLKGVHPKFPE 127
Query: 447 GGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTG 626
GGKMSQYL S+K+GD +EFRGP+GLL Y GKGKF+I+P+KKS P + + +GMIAGGTG
Sbjct: 128 GGKMSQYLNSLKLGDVVEFRGPSGLLTYTGKGKFSIQPNKKSPPEPRVARKLGMIAGGTG 187
Query: 627 ITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAP 806
ITPMLQ+IRAI+KDP+D T C LLFANQTEKDI H +FKLW+T+D+ P
Sbjct: 188 ITPMLQLIRAILKDPEDPTQCFLLFANQTEKDIILREDLEELQARHPNQFKLWFTLDQPP 247
Query: 807 EAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGH 956
E W YS+GFV+ +MIR+HL L+L+CGPP + +L+++G+
Sbjct: 248 EDWTYSKGFVSADMIREHLPAPAEDVLLLLCGPPPMVQLACHPNLDKLGY 297
>ref|XP_003353295.1| PREDICTED: cytochrome b5 reductase 4-like [Sus scrofa].
Length = 281
Score = 92.8 bits (229), Expect = 3e-19
Identities = 67/233 (28%), Positives = 104/233 (44%), Gaps = 4/233 (1%)
Frame = +3
Query: 213 RLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGF 392
+LI KE V HDT+ F LP H L +PVGQH+YL I G +++PYTPVS F
Sbjct: 56 QLISKEDVTHDTKLFSVMLPPSTH-LQVPVGQHVYLKLTIAGTEIVKPYTPVSDSLVPEF 114
Query: 393 VDLVIK----VYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP 560
+ V +YF K G + L+ ++IGD + P +G F I
Sbjct: 115 KEPVFPNSKYIYFL---VKIYPAGLFTPELDLLQIGDYVSVSNP--------EGSFKISQ 163
Query: 561 DKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXX 740
+ ++ + ++A GTG TPM++V+ + L+F N+TE DI
Sbjct: 164 -------FQEMEDLFLLAAGTGFTPMVKVLHYALTGIPSLRKVKLMFFNKTEDDI-IWRS 215
Query: 741 XXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMC 899
RF + + + P W QG+++ ++ + L VL+C
Sbjct: 216 QLEKLALKDKRFDVEFVLSAPPSEWSGKQGYISPALLSEFLKKSLEKSKVLIC 268
>ref|XP_003361775.1| PREDICTED: LOW QUALITY PROTEIN: NADH-cytochrome b5 reductase-like
[Sus scrofa].
Length = 313
Score = 74.3 bits (181), Expect = 9e-14
Identities = 58/214 (27%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Frame = +3
Query: 189 NPDIKYPLRLIDKEVVNHDT-RRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTP 365
NP+ R+ + ++ DT RFALP LGL GQH+ L +D + R YTP
Sbjct: 70 NPETFMAFRISAVDRLSKDTYXSVRFALPGNSQ-LGLRPGQHLILRGTVDDLEIQRAYTP 128
Query: 366 VSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGK 545
+S + +G+ +++IK Y G MSQ ++S ++GD +RGP G
Sbjct: 129 ISPANTEGYFEVLIKCY---------QTGLMSQCVKSWRVGDAAFWRGP--------FGS 171
Query: 546 FAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDI 725
F +P++ + M+A GTG+ PM+ ++++I + +D T L+ +T + I
Sbjct: 172 FCYKPNQYGELL--------MLAAGTGLAPMVPILQSITDNAEDETFVTLVGCFKTFEGI 223
Query: 726 XXXXXXXXXXXXHSARFKLWYTVDRAPE--AWDY 821
+ R + + +PE W Y
Sbjct: 224 YLKAFLQEQARFWNVRTFFVLSQENSPEQLPWSY 257
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 26,677,568
Number of extensions: 883943
Number of successful extensions: 3659
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3595
Number of HSP's successfully gapped: 4
Length of query: 323
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,879,129
Effective search space: 1988924896
Effective search space used: 1988924896
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus]. 504 e-143
Alignment gi|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus]. 338 3e-93
Alignment gi|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus m... 304 6e-83
Alignment gi|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mu... 294 8e-80
Alignment gi|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus]. 94 1e-19
Alignment gi|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus]. 92 5e-19
>ref|NP_084063.1| NADH-cytochrome b5 reductase 3 [Mus musculus].
Length = 301
Score = 504 bits (1297), Expect = e-143
Identities = 244/295 (82%), Positives = 262/295 (88%)
Frame = +3
Query: 78 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 257
MGAQLSTL HVVLSPVWF+YSL MKLFQRSTPAITLENPDIKYPLRLIDKEV++ DTRRF
Sbjct: 1 MGAQLSTLSHVVLSPVWFIYSLFMKLFQRSTPAITLENPDIKYPLRLIDKEVISPDTRRF 60
Query: 258 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 437
RFALPSPQHILGLP+GQHIYLS RIDGNLVIRPYTPVSSDDDKGFVDLV+KVYFKDTHPK
Sbjct: 61 RFALPSPQHILGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVKVYFKDTHPK 120
Query: 438 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 617
FPAGGKMSQYLE+MKIGDTIEFRGPNGLLVYQGKGKFAIR DKKS+PV++TVKSVGMIAG
Sbjct: 121 FPAGGKMSQYLENMKIGDTIEFRGPNGLLVYQGKGKFAIRADKKSNPVVRTVKSVGMIAG 180
Query: 618 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVD 797
GTGITPMLQVIRA++KDP+DHTVC+LLFANQ+EKDI HSARFKLWYTVD
Sbjct: 181 GTGITPMLQVIRAVLKDPNDHTVCYLLFANQSEKDILLRPELEELRNEHSARFKLWYTVD 240
Query: 798 RAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHPK 962
+AP+AWDYSQGFVNEEMIRDHL L+LMCGPP +LERVGHPK
Sbjct: 241 KAPDAWDYSQGFVNEEMIRDHLPTPGEEPLILMCGPPPMIQFACLPNLERVGHPK 295
>ref|NP_082333.1| NADH-cytochrome b5 reductase 1 [Mus musculus].
Length = 305
Score = 338 bits (868), Expect = 3e-93
Identities = 160/262 (61%), Positives = 202/262 (77%)
Frame = +3
Query: 171 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVI 350
P +TL++PD KY LRL+DK V+H+TRRFRFALP+ HILGLPVG+H+YLSARIDG+LVI
Sbjct: 36 PQVTLQDPDEKYLLRLLDKTTVSHNTRRFRFALPTAHHILGLPVGKHVYLSARIDGSLVI 95
Query: 351 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 530
RPYTPV+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL+S+KIGD +EFRGP+GLL Y
Sbjct: 96 RPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKIGDMVEFRGPSGLLSY 155
Query: 531 QGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 710
GKG F I+P+KKS P ++ K +GMIAGGTGITPMLQ+IRAI+K P+D T C LLFANQ
Sbjct: 156 AGKGNFNIQPNKKSPPELRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQ 215
Query: 711 TEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLV 890
TE+DI + RFKLW+T+D PE W YS+GFV +MI++HL L+
Sbjct: 216 TERDIILREDLEELQAQYPNRFKLWFTLDSPPEDWTYSKGFVTADMIQEHLPAPAEDVLL 275
Query: 891 LMCGPPAHDPVRLPAHLERVGH 956
L+CGPP + +L+++G+
Sbjct: 276 LLCGPPPMVQLACHPNLDKLGY 297
>ref|NP_796190.1| NADH-cytochrome b5 reductase 2 isoform 2 [Mus musculus].
Length = 276
Score = 304 bits (779), Expect = 6e-83
Identities = 148/262 (56%), Positives = 184/262 (70%)
Frame = +3
Query: 177 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 356
ITL++P+ KYPL LI+KE ++H+TRRFRF LPSP H+LGLPVG +++L A+I+ LVIR
Sbjct: 9 ITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNELVIRA 68
Query: 357 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 536
YTPVSSDDD+GFVDL+IK+YFK+ HPK+P GGKM+QYLE+MKIGDTI FRGP G L Y
Sbjct: 69 YTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNE 128
Query: 537 KGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 716
G I+ +K S P K V +GMIAGGTGITPMLQ+IR I KD D T LLFANQTE
Sbjct: 129 PGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKDTSDETRMSLLFANQTE 188
Query: 717 KDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLM 896
+DI H +F LWYT+DR P W YS GFV+ +MI++HL L+L+
Sbjct: 189 EDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADMIKEHLPPPGEDTLILV 248
Query: 897 CGPPAHDPVRLPAHLERVGHPK 962
CGPP LE++ + K
Sbjct: 249 CGPPPLIQAAAHPSLEQLSYTK 270
>ref|NP_001192156.1| NADH-cytochrome b5 reductase 2 isoform 1 [Mus musculus].
Length = 292
Score = 294 bits (752), Expect = 8e-80
Identities = 148/278 (53%), Positives = 184/278 (66%), Gaps = 16/278 (5%)
Frame = +3
Query: 177 ITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRP 356
ITL++P+ KYPL LI+KE ++H+TRRFRF LPSP H+LGLPVG +++L A+I+ LVIR
Sbjct: 9 ITLQDPEAKYPLPLIEKEQISHNTRRFRFGLPSPDHVLGLPVGNYVHLLAQINNELVIRA 68
Query: 357 YTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQG 536
YTPVSSDDD+GFVDL+IK+YFK+ HPK+P GGKM+QYLE+MKIGDTI FRGP G L Y
Sbjct: 69 YTPVSSDDDQGFVDLIIKIYFKNVHPKYPEGGKMTQYLENMKIGDTILFRGPTGRLFYNE 128
Query: 537 K----------------GKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKD 668
G I+ +K S P K V +GMIAGGTGITPMLQ+IR I KD
Sbjct: 129 PGCQTRAAEVKNIFIFLGTLLIKANKTSEPEKKLVHHLGMIAGGTGITPMLQLIRHITKD 188
Query: 669 PDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEM 848
D T LLFANQTE+DI H +F LWYT+DR P W YS GFV+ +M
Sbjct: 189 TSDETRMSLLFANQTEEDILLRKELEEVATTHHKQFNLWYTLDRPPSDWKYSSGFVSADM 248
Query: 849 IRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHPK 962
I++HL L+L+CGPP LE++ + K
Sbjct: 249 IKEHLPPPGEDTLILVCGPPPLIQAAAHPSLEQLSYTK 286
>ref|NP_780680.1| NADH-cytochrome b5 reductase-like [Mus musculus].
Length = 256
Score = 94.4 bits (233), Expect = 1e-19
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 6/247 (2%)
Frame = +3
Query: 189 NPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPV 368
+P+ + E V DT RF LP LGL GQH+ L +DG + R YTP+
Sbjct: 14 SPETFLAFHISTMEKVTKDTYLVRFTLPGNSR-LGLRPGQHLILRGVVDGLEIQRAYTPI 72
Query: 369 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKF 548
S +G+ D++IK Y G MSQY+ES + GDT +RGP G +Y+
Sbjct: 73 SPVTAEGYFDVLIKCY---------RTGLMSQYVESWRTGDTAFWRGPFGSFLYE----- 118
Query: 549 AIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIX 728
KK ++ M+A GTG+ PM+ ++++I D DD T L+ +T + I
Sbjct: 119 ----PKKYGELL-------MLAAGTGLAPMVPILQSITDDEDDETFVTLVGCFKTFEGIY 167
Query: 729 XXXXXXXXXXXHSARFKLWYTVDRAPE--AWDYSQ----GFVNEEMIRDHLXXXXXXXLV 890
+ + + + +PE W Y G + +E++ + +
Sbjct: 168 LKTFFQEQARFWNVQTFFVLSQEVSPEQLPWSYRDKTHFGRLGQELVAELVACCRRKPFT 227
Query: 891 LMCGPPA 911
L+CG PA
Sbjct: 228 LVCGSPA 234
>ref|NP_077157.2| cytochrome b5 reductase 4 [Mus musculus].
Length = 528
Score = 92.4 bits (228), Expect = 5e-19
Identities = 70/235 (29%), Positives = 106/235 (45%), Gaps = 4/235 (1%)
Frame = +3
Query: 213 RLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGF 392
+LI KE V HDTR F LP H L +PVGQH+YL + G +++PYTPVS F
Sbjct: 286 QLISKEDVTHDTRLFCLMLPPSTH-LQVPVGQHVYLKLSVTGAEIVKPYTPVSDSLLSDF 344
Query: 393 VDLVI--KVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDK 566
+ V+ Y +PA G + L+ ++IGD I GP G D
Sbjct: 345 KEPVLSPNKYICFLIKIYPA-GLFTPELDRLQIGDFISVSGPEG--------------DF 389
Query: 567 KSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXX 746
K S ++ V+ + ++A GTG TPM+ V+ + L+F N+TE DI
Sbjct: 390 KVSK-LQEVEDLFLLAAGTGFTPMVTVLNYALSHMSSLRKVKLMFFNKTEDDI-IWRCQL 447
Query: 747 XXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHL--XXXXXXXLVLMCGP 905
RF + + + W+ QG ++ ++ + L + +CGP
Sbjct: 448 EKLALREKRFDVEFVLSAPSPEWNGKQGHISRALLSEFLQRSSENSRAFLCICGP 502
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 34,883,571
Number of extensions: 1081878
Number of successful extensions: 4320
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4239
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 221
Effective length of database: 12,553,887
Effective search space: 2774409027
Effective search space used: 2774409027
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo ... 510 e-145
Alignment gi|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Ho... 497 e-141
Alignment gi|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 468 e-132
Alignment gi|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo ... 468 e-132
Alignment gi|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Ho... 468 e-132
Alignment gi|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens]. 331 5e-91
Alignment gi|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens]. 310 1e-84
Alignment gi|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens]. 89 8e-18
Alignment gi|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapi... 85 9e-17
>ref|NP_000389.1| NADH-cytochrome b5 reductase 3 isoform 1 [Homo sapiens].
Length = 301
Score = 510 bits (1313), Expect = e-145
Identities = 247/294 (84%), Positives = 263/294 (89%)
Frame = +3
Query: 78 MGAQLSTLGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRF 257
MGAQLSTLGH+VL PVWFLYSLLMKLFQRSTPAITLE+PDIKYPLRLID+E+++HDTRRF
Sbjct: 1 MGAQLSTLGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRF 60
Query: 258 RFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPK 437
RFALPSPQHILGLPVGQHIYLSARIDGNLV+RPYTP+SSDDDKGFVDLVIKVYFKDTHPK
Sbjct: 61 RFALPSPQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPK 120
Query: 438 FPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAG 617
FPAGGKMSQYLESM+IGDTIEFRGP+GLLVYQGKGKFAIRPDKKS+P+I+TVKSVGMIAG
Sbjct: 121 FPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAG 180
Query: 618 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVD 797
GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDI HSARFKLWYT+D
Sbjct: 181 GTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLD 240
Query: 798 RAPEAWDYSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHP 959
RAPEAWDY QGFVNEEMIRDHL LVLMCGPP +L+ VGHP
Sbjct: 241 RAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHP 294
>ref|NP_001165131.1| NADH-cytochrome b5 reductase 3 isoform 3 [Homo sapiens].
Length = 334
Score = 497 bits (1280), Expect = e-141
Identities = 240/287 (83%), Positives = 256/287 (89%)
Frame = +3
Query: 99 LGHVVLSPVWFLYSLLMKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSP 278
LGH+VL PVWFLYSLLMKLFQRSTPAITLE+PDIKYPLRLID+E+++HDTRRFRFALPSP
Sbjct: 41 LGHMVLFPVWFLYSLLMKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSP 100
Query: 279 QHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKM 458
QHILGLPVGQHIYLSARIDGNLV+RPYTP+SSDDDKGFVDLVIKVYFKDTHPKFPAGGKM
Sbjct: 101 QHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKM 160
Query: 459 SQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPM 638
SQYLESM+IGDTIEFRGP+GLLVYQGKGKFAIRPDKKS+P+I+TVKSVGMIAGGTGITPM
Sbjct: 161 SQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPM 220
Query: 639 LQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWD 818
LQVIRAIMKDPDDHTVCHLLFANQTEKDI HSARFKLWYT+DRAPEAWD
Sbjct: 221 LQVIRAIMKDPDDHTVCHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWD 280
Query: 819 YSQGFVNEEMIRDHLXXXXXXXLVLMCGPPAHDPVRLPAHLERVGHP 959
Y QGFVNEEMIRDHL LVLMCGPP +L+ VGHP
Sbjct: 281 YGQGFVNEEMIRDHLPPPEEEPLVLMCGPPPMIQYACLPNLDHVGHP 327
>ref|NP_001165132.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 468 bits (1204), Expect = e-132
Identities = 226/271 (83%), Positives = 241/271 (88%)
Frame = +3
Query: 147 MKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSA 326
MKLFQRSTPAITLE+PDIKYPLRLID+E+++HDTRRFRFALPSPQHILGLPVGQHIYLSA
Sbjct: 1 MKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSA 60
Query: 327 RIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFR 506
RIDGNLV+RPYTP+SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESM+IGDTIEFR
Sbjct: 61 RIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFR 120
Query: 507 GPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 686
GP+GLLVYQGKGKFAIRPDKKS+P+I+TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV
Sbjct: 121 GPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 180
Query: 687 CHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLX 866
CHLLFANQTEKDI HSARFKLWYT+DRAPEAWDY QGFVNEEMIRDHL
Sbjct: 181 CHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLP 240
Query: 867 XXXXXXLVLMCGPPAHDPVRLPAHLERVGHP 959
LVLMCGPP +L+ VGHP
Sbjct: 241 PPEEEPLVLMCGPPPMIQYACLPNLDHVGHP 271
>ref|NP_015565.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 468 bits (1204), Expect = e-132
Identities = 226/271 (83%), Positives = 241/271 (88%)
Frame = +3
Query: 147 MKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSA 326
MKLFQRSTPAITLE+PDIKYPLRLID+E+++HDTRRFRFALPSPQHILGLPVGQHIYLSA
Sbjct: 1 MKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSA 60
Query: 327 RIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFR 506
RIDGNLV+RPYTP+SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESM+IGDTIEFR
Sbjct: 61 RIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFR 120
Query: 507 GPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 686
GP+GLLVYQGKGKFAIRPDKKS+P+I+TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV
Sbjct: 121 GPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 180
Query: 687 CHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLX 866
CHLLFANQTEKDI HSARFKLWYT+DRAPEAWDY QGFVNEEMIRDHL
Sbjct: 181 CHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLP 240
Query: 867 XXXXXXLVLMCGPPAHDPVRLPAHLERVGHP 959
LVLMCGPP +L+ VGHP
Sbjct: 241 PPEEEPLVLMCGPPPMIQYACLPNLDHVGHP 271
>ref|NP_001123291.1| NADH-cytochrome b5 reductase 3 isoform 2 [Homo sapiens].
Length = 278
Score = 468 bits (1204), Expect = e-132
Identities = 226/271 (83%), Positives = 241/271 (88%)
Frame = +3
Query: 147 MKLFQRSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSA 326
MKLFQRSTPAITLE+PDIKYPLRLID+E+++HDTRRFRFALPSPQHILGLPVGQHIYLSA
Sbjct: 1 MKLFQRSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSA 60
Query: 327 RIDGNLVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFR 506
RIDGNLV+RPYTP+SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESM+IGDTIEFR
Sbjct: 61 RIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFR 120
Query: 507 GPNGLLVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 686
GP+GLLVYQGKGKFAIRPDKKS+P+I+TVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV
Sbjct: 121 GPSGLLVYQGKGKFAIRPDKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTV 180
Query: 687 CHLLFANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLX 866
CHLLFANQTEKDI HSARFKLWYT+DRAPEAWDY QGFVNEEMIRDHL
Sbjct: 181 CHLLFANQTEKDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLP 240
Query: 867 XXXXXXLVLMCGPPAHDPVRLPAHLERVGHP 959
LVLMCGPP +L+ VGHP
Sbjct: 241 PPEEEPLVLMCGPPPMIQYACLPNLDHVGHP 271
>ref|NP_057327.2| NADH-cytochrome b5 reductase 1 [Homo sapiens].
Length = 305
Score = 331 bits (849), Expect = 5e-91
Identities = 158/262 (60%), Positives = 198/262 (75%)
Frame = +3
Query: 171 PAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVI 350
P +TL +P+ KY LRL+DK V+H+T+RFRFALP+ H LGLPVG+HIYLS RIDG+LVI
Sbjct: 36 PQVTLLDPNEKYLLRLLDKTTVSHNTKRFRFALPTAHHTLGLPVGKHIYLSTRIDGSLVI 95
Query: 351 RPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVY 530
RPYTPV+SD+D+G+VDLVIKVY K HPKFP GGKMSQYL+S+K+GD +EFRGP+GLL Y
Sbjct: 96 RPYTPVTSDEDQGYVDLVIKVYLKGVHPKFPEGGKMSQYLDSLKVGDVVEFRGPSGLLTY 155
Query: 531 QGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 710
GKG F I+P+KKS P + K +GMIAGGTGITPMLQ+IRAI+K P+D T C LLFANQ
Sbjct: 156 TGKGHFNIQPNKKSPPEPRVAKKLGMIAGGTGITPMLQLIRAILKVPEDPTQCFLLFANQ 215
Query: 711 TEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXXXLV 890
TEKDI + RFKLW+T+D P+ W YS+GFV +MIR+HL LV
Sbjct: 216 TEKDIILREDLEELQARYPNRFKLWFTLDHPPKDWAYSKGFVTADMIREHLPAPGDDVLV 275
Query: 891 LMCGPPAHDPVRLPAHLERVGH 956
L+CGPP + +L+++G+
Sbjct: 276 LLCGPPPMVQLACHPNLDKLGY 297
>ref|NP_057313.2| NADH-cytochrome b5 reductase 2 [Homo sapiens].
Length = 276
Score = 310 bits (795), Expect = 1e-84
Identities = 148/265 (55%), Positives = 185/265 (69%)
Frame = +3
Query: 162 RSTPAITLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGN 341
R ITL++P+ KYPL LI+KE ++H+TRRFRF LPSP H+LGLPVG ++ L A+ID
Sbjct: 4 RRREPITLQDPEAKYPLPLIEKEKISHNTRRFRFGLPSPDHVLGLPVGNYVQLLAKIDNE 63
Query: 342 LVIRPYTPVSSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGL 521
LV+R YTPVSSDDD+GFVDL+IK+YFK+ HP++P GGKM+QYLE+MKIG+TI FRGP G
Sbjct: 64 LVVRAYTPVSSDDDRGFVDLIIKIYFKNVHPQYPEGGKMTQYLENMKIGETIFFRGPRGR 123
Query: 522 LVYQGKGKFAIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLF 701
L Y G G IRPD+ S P +GMIAGGTGITPMLQ+IR I KDP D T L+F
Sbjct: 124 LFYHGPGNLGIRPDQTSEPKKTLADHLGMIAGGTGITPMLQLIRHITKDPSDRTRMSLIF 183
Query: 702 ANQTEKDIXXXXXXXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHLXXXXXX 881
ANQTE+DI H +F LWYT+DR P W YS GFV +MI++HL
Sbjct: 184 ANQTEEDILVRKELEEIARTHPDQFNLWYTLDRPPIGWKYSSGFVTADMIKEHLPPPAKS 243
Query: 882 XLVLMCGPPAHDPVRLPAHLERVGH 956
L+L+CGPP +LE++G+
Sbjct: 244 TLILVCGPPPLIQTAAHPNLEKLGY 268
>ref|NP_057314.2| cytochrome b5 reductase 4 [Homo sapiens].
Length = 521
Score = 88.6 bits (218), Expect = 8e-18
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 6/237 (2%)
Frame = +3
Query: 213 RLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGF 392
+LI KE V HDTR F LP H L +P+GQH+YL I G +++PYTPVS F
Sbjct: 279 QLISKEDVTHDTRLFCLMLPPSTH-LQVPIGQHVYLKLPITGTEIVKPYTPVSGSLLSEF 337
Query: 393 VDLVIK----VYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP 560
+ V+ +YF K G + L+ ++IGD + P +G F I
Sbjct: 338 KEPVLPNNKYIYFL---IKIYPTGLFTPELDRLQIGDFVSVSSP--------EGNFKISK 386
Query: 561 DKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIXXXXX 740
+ ++ + ++A GTG TPM++++ + D L+F N+TE DI
Sbjct: 387 -------FQELEDLFLLAAGTGFTPMVKILNYALTDIPSLRKVKLMFFNKTEDDI-IWRS 438
Query: 741 XXXXXXXHSARFKLWYTVDRAPEAWDYSQGFVNEEMIRDHL--XXXXXXXLVLMCGP 905
R + + + W+ QG ++ ++ + L LV +CGP
Sbjct: 439 QLEKLAFKDKRLDVEFVLSAPISEWNGKQGHISPALLSEFLKRNLDKSKVLVCICGP 495
>ref|NP_001026842.2| NADH-cytochrome b5 reductase-like [Homo sapiens].
Length = 315
Score = 85.1 bits (209), Expect = 9e-17
Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 6/244 (2%)
Frame = +3
Query: 189 NPDIKYPLRLIDKEVVNHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVIRPYTPV 368
NP+ +I + + DT R RFALP LGL GQH+ L +D + R YTP+
Sbjct: 73 NPETFVAFCIIAMDRLTKDTYRVRFALPGNSQ-LGLRPGQHLILRGIVDDLEIQRAYTPI 131
Query: 369 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKF 548
S + +G+ +++IK Y G MS+Y+ES ++GDT +RGP G F
Sbjct: 132 SPANAEGYFEVLIKCY---------QMGLMSRYVESWRVGDTAFWRGP--------FGDF 174
Query: 549 AIRPDKKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTEKDIX 728
+P++ + ++A GTG+ PM+ ++++I + +D T L+ +T + I
Sbjct: 175 FYKPNQYGELL--------LLAAGTGLAPMVPILQSITDNENDETFVTLVGCFKTFESIY 226
Query: 729 XXXXXXXXXXXHSARFKLWYTVDRAPE--AWDYSQ----GFVNEEMIRDHLXXXXXXXLV 890
+ R + + + E W Y + G + +++I++ +
Sbjct: 227 LKTFLQEQARFWNVRTFFVLSQESSSEQLPWSYQEKTHFGHLGQDLIKELVSCCRRKPFA 286
Query: 891 LMCG 902
L+CG
Sbjct: 287 LVCG 290
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 41,645,872
Number of extensions: 1325442
Number of successful extensions: 5439
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 5331
Number of HSP's successfully gapped: 9
Length of query: 323
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 220
Effective length of database: 14,901,872
Effective search space: 3278411840
Effective search space used: 3278411840
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008672
(970 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 278 5e-72
>Sscrofa_Chr05
|| Length = 111506441
Score = 278 bits (140), Expect = 5e-72
Identities = 161/164 (98%), Gaps = 3/164 (1%)
Strand = Plus / Plus
Query: 809 agcctgggactacagccagggcttcgtgaacgaggagatgatccgggaccaccttccgcc 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3627012 agcctgggactacagccagggcttcgtgaacgaggagatgatccgggaccaccttccgcc 3627071
Query: 869 cccggaggaggagccgctggtgctgatgtgcgggccccccgcccatgatccagtacgcct 928
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3627072 cccggaggaggagccgctggtgctgatgtgcggg-cccccgcccatgatccagtacgcct 3627130
Query: 929 gcctgccc-acctggagcgcgtgggccaccccaa-gagcgctgc 970
|||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 3627131 gcctgcccaacctggagcgcgtgggccaccccaaggagcgctgc 3627174
Score = 270 bits (136), Expect = 1e-69
Identities = 136/136 (100%)
Strand = Plus / Plus
Query: 98 gttgggccacgtggtcctgtccccagtctggttcctgtatagcctgctcatgaagctgtt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611229 gttgggccacgtggtcctgtccccagtctggttcctgtatagcctgctcatgaagctgtt 3611288
Query: 158 ccagcgttccaccccggccatcaccctcgagaacccagacatcaagtatccgctgaggct 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611289 ccagcgttccaccccggccatcaccctcgagaacccagacatcaagtatccgctgaggct 3611348
Query: 218 cattgacaaggaggtc 233
||||||||||||||||
Sbjct: 3611349 cattgacaaggaggtc 3611364
Score = 264 bits (133), Expect = 8e-68
Identities = 133/133 (100%)
Strand = Plus / Plus
Query: 409 aggtgtacttcaaagacacccaccccaagtttcccgccggagggaagatgtcccagtacc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3617686 aggtgtacttcaaagacacccaccccaagtttcccgccggagggaagatgtcccagtacc 3617745
Query: 469 tggagagcatgaagatcggagacaccatcgagttccggggccccaacgggctgctggtct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3617746 tggagagcatgaagatcggagacaccatcgagttccggggccccaacgggctgctggtct 3617805
Query: 529 accagggcaaagg 541
|||||||||||||
Sbjct: 3617806 accagggcaaagg 3617818
Score = 212 bits (107), Expect = 3e-52
Identities = 110/111 (99%)
Strand = Plus / Plus
Query: 303 ggccagcacatctacctctcggctcggattgatgggaatctggtcattcggccctacacg 362
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3615238 ggccagcacatctacctctcggctcggattgatgggaacctggtcattcggccctacacg 3615297
Query: 363 cccgtctccagtgatgacgacaagggctttgtggacctggtcatcaaggtg 413
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3615298 cccgtctccagtgatgacgacaagggctttgtggacctggtcatcaaggtg 3615348
Score = 180 bits (91), Expect = 9e-43
Identities = 100/103 (97%)
Strand = Plus / Plus
Query: 708 cagaccgagaaggacatcctgctgcggcccgagctggaggaactgaggaatgaacattct 767
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3622640 cagaccgagaaggacatcttgctgcggcccgagctggaggaactgaggaacgaacattct 3622699
Query: 768 gcgcgcttcaagctctggtacacggtggacagagccccagaag 810
|||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3622700 gcgcgcttcaagctctggtacacggtggacagagccccggaag 3622742
Score = 172 bits (87), Expect = 2e-40
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 624 ggcatcaccccaatgctgcaggtgatccgagccatcatgaaggacccggatgaccacacc 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618491 ggcatcaccccaatgctgcaggtgatccgagccatcatgaaggacccggatgaccacacc 3618550
Query: 684 gtgtgccacctgctctttgccaaccag 710
|||||||||||||||||||||||||||
Sbjct: 3618551 gtgtgccacctgctctttgccaaccag 3618577
Score = 157 bits (79), Expect = 1e-35
Identities = 85/87 (97%)
Strand = Plus / Plus
Query: 539 aggaaagtttgccatccgcccggacaagaaatccagtcccgtcatcaagacggtgaagtc 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3618186 aggaaagtttgccatccgcccagacaagaaatccagtcccgtcatcaagacggtgaagtc 3618245
Query: 599 tgttggcatgatcgcgggaggaaccgg 625
||| |||||||||||||||||||||||
Sbjct: 3618246 tgtgggcatgatcgcgggaggaaccgg 3618272
Score = 143 bits (72), Expect = 2e-31
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 229 aggtcgtcaaccatgacacccggcggttccgctttgccctgccgtcgccccagcacatcc 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3614836 aggtcgtcaaccatgacacccggcggttccgctttgccctgccgtcgccccagcacgtcc 3614895
Query: 289 tgggcctccctgtggg 304
||||||||||||||||
Sbjct: 3614896 tgggcctccctgtggg 3614911
Score = 91.7 bits (46), Expect = 7e-16
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 53 agagcgagcgcagagcggcaccaccatgggggcccagctgagcacg 98
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3604210 agagcgagcgcagagcggcaccaccatgggggcccagctgagcacg 3604255
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 20,487,526
Number of extensions: 117
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 10
Length of query: 970
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 949
Effective length of database: 2,808,413,156
Effective search space: 2665184085044
Effective search space used: 2665184085044
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)