Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001068884.1| cathepsin F [Bos taurus]. 639 0.0
Alignment gi|NP_001077155.1| cathepsin L1 [Bos taurus]. 160 2e-39
Alignment gi|NP_001103540.1| cathepsin W [Bos taurus]. 154 2e-37
Alignment gi|NP_776457.1| cathepsin L2 precursor [Bos taurus]. 147 2e-35
Alignment gi|NP_001029607.1| cathepsin K [Bos taurus]. 131 2e-30
Alignment gi|NP_001029557.1| pro-cathepsin H precursor [Bos taurus]. 125 7e-29
Alignment gi|NP_001028787.1| cathepsin S precursor [Bos taurus]. 121 2e-27
Alignment gi|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [B... 107 3e-23
Alignment gi|XP_874012.3| PREDICTED: cathepsin O [Bos taurus]. 107 3e-23
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 68 2e-11
>ref|NP_001068884.1| cathepsin F [Bos taurus].
Length = 460
Score = 639 bits (1649), Expect = 0.0
Identities = 310/369 (84%), Positives = 328/369 (88%)
Frame = +2
Query: 230 ELASPELLAPARFALEMYNXXXXXXXXXXXXXXXXXXXXXXXXSLYSLKATLVEPPCNDP 409
ELASPEL PARFALEMYN SLYSLKATLVEPPCNDP
Sbjct: 33 ELASPELREPARFALEMYNRGRAAGTRAALGAVRGRVRRAGRGSLYSLKATLVEPPCNDP 92
Query: 410 TVCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTDDTNETFSSFLPLLNKDPLP 589
TVCQLP+SKKTLLCSFEVLDELGKHMLLRRDCGPVDTK TDD NETFSSFLPLLNKDPLP
Sbjct: 93 TVCQLPVSKKTLLCSFEVLDELGKHMLLRRDCGPVDTKTTDDRNETFSSFLPLLNKDPLP 152
Query: 590 QDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKF 769
QDFSVKMASIFK+FVTTYNRTYD++EEA WRMSVFANNMVRAQKIQALD GTARYGVTKF
Sbjct: 153 QDFSVKMASIFKDFVTTYNRTYDSQEEASWRMSVFANNMVRAQKIQALDRGTARYGVTKF 212
Query: 770 SDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCW 949
SDLTEEEFRTIYLNPLL++ PGR MR A+ V+ +PPP+WDWR KGAVT VKDQGMCGSCW
Sbjct: 213 SDLTEEEFRTIYLNPLLKDAPGRNMRPAQPVTDVPPPQWDWRNKGAVTNVKDQGMCGSCW 272
Query: 950 AFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKTLGGLETEDD 1129
AFSVTGNVEGQWFLK+GTLLSLSEQELLDCDK DK C+GGLPSNAYSAI+TLGGLETEDD
Sbjct: 273 AFSVTGNVEGQWFLKRGTLLSLSEQELLDCDKTDKACLGGLPSNAYSAIRTLGGLETEDD 332
Query: 1130 YSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGI 1309
YSYRG LQTCSF+AEKAKVYINDSVELS+NEQKLAAWLA+ GP+S+AINAFGMQFYRHGI
Sbjct: 333 YSYRGRLQTCSFSAEKAKVYINDSVELSKNEQKLAAWLAKNGPVSIAINAFGMQFYRHGI 392
Query: 1310 SHPLRPLCS 1336
SHPLRPLCS
Sbjct: 393 SHPLRPLCS 401
>ref|NP_001077155.1| cathepsin L1 [Bos taurus].
Length = 333
Score = 160 bits (406), Expect = 2e-39
Identities = 95/254 (37%), Positives = 141/254 (55%), Gaps = 7/254 (2%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQ-KIQALDTGTARYGVTK-- 766
F + + +K + + + YD EE WR +V+ NM + Q G + +
Sbjct: 21 FDHSLDTQWKLWKAAHRKPYDLNEEG-WRKAVWKKNMKMIELHNQEYSQGKHSFSMAMNA 79
Query: 767 FSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSC 946
F D+T EEFR +N +++ + +++ + PP DWR+KG VT VK+QG CGSC
Sbjct: 80 FGDMTNEEFRHT-MNGFQRQKNKKGKEFHETIFASIPPSVDWREKGYVTPVKNQGKCGSC 138
Query: 947 WAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVD--KGCMGGLPSNAYSAIKTLGGLET 1120
WAFS TG +EGQ F K G L+SLSEQ L+DC + + +GC GG NA+ + +GGL++
Sbjct: 139 WAFSATGALEGQMFQKTGKLVSLSEQNLVDCSQPEGNRGCHGGFIDNAFQYVLDVGGLDS 198
Query: 1121 EDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQF 1294
E+ Y Y G + TC +N + V+L + E+ L +A GPISVA++A QF
Sbjct: 199 EESYPYTGLVGTCLYNPNNSAANETGFVDLPKQEKALMKAVANLGPISVAVDAHNPSFQF 258
Query: 1295 YRHGISHPLRPLCS 1336
Y+ GI + P CS
Sbjct: 259 YKSGIYY--EPNCS 270
>ref|NP_001103540.1| cathepsin W [Bos taurus].
Length = 272
Score = 154 bits (388), Expect = 2e-37
Identities = 83/223 (37%), Positives = 121/223 (54%), Gaps = 3/223 (1%)
Frame = +2
Query: 566 LLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGT 745
L +DP PQ +K +F+ F YNR+Y E R+ +FA N+ +AQ++Q D GT
Sbjct: 26 LRGQDPGPQPLELK--EVFRLFQMQYNRSYPNPAEYARRLDIFAQNLAKAQRLQEEDLGT 83
Query: 746 ARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRL-AKSVSSLPPPEWDWRKKGAVTKVK 922
A +GVT+FSDLTEEEF +Y + + E G ++ ++ P DWRK G ++ V+
Sbjct: 84 AEFGVTQFSDLTEEEFVQLYGSQVAGEALGVSRKVGSEEWGESEPQTCDWRKVGTISPVR 143
Query: 923 DQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKT 1102
DQ C CWA + GN+E W +K + +S Q+LLDCD+ GC GG +A+ +
Sbjct: 144 DQRNCNCCWAMAAAGNIEALWAIKFRHFVEVSVQQLLDCDRCGNGCRGGFVWDAFLTVLN 203
Query: 1103 LGGLETEDDYSYRGHLQT--CSFNAEKAKVYINDSVELSQNEQ 1225
GL +E DY + G +T C K +I D + L EQ
Sbjct: 204 NSGLASEKDYPFNGSGKTHRCLAKKYKKVAWIQDFIILQACEQ 246
>ref|NP_776457.1| cathepsin L2 precursor [Bos taurus].
Length = 334
Score = 147 bits (372), Expect = 2e-35
Identities = 95/245 (38%), Positives = 132/245 (53%), Gaps = 8/245 (3%)
Frame = +2
Query: 626 EFVTTYNRTYDTKEEARWRMSVFANNM-VRAQKIQALDTG--TARYGVTKFSDLTEEEFR 796
++ T+ R Y EE WR +V+ N + Q G R + F D+T EEFR
Sbjct: 31 QWKATHRRLYGMNEE-EWRRAVWEKNKKIIDLHNQEYSEGKHAFRMAMNAFGDMTNEEFR 89
Query: 797 TIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVE 976
+ +N ++ + + + P DW KKG VT VK+QG CGSCWAFS TG +E
Sbjct: 90 QV-MNGFQNQKHKKGKLFHEPLLVDVPKSVDWTKKGYVTPVKNQGQCGSCWAFSATGALE 148
Query: 977 GQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG-H 1147
GQ F K G L+SLSEQ L+DC + ++GC GGL NA+ IK GGL++E+ Y Y
Sbjct: 149 GQMFRKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMDNAFQYIKDNGGLDSEESYPYLATD 208
Query: 1148 LQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--FGMQFYRHGISHPL 1321
+C++ E + V++ Q E+ L +A GPISVAI+A QFY+ GI +
Sbjct: 209 TNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYD- 267
Query: 1322 RPLCS 1336
P CS
Sbjct: 268 -PDCS 271
>ref|NP_001029607.1| cathepsin K [Bos taurus].
Length = 334
Score = 131 bits (329), Expect = 2e-30
Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 16/266 (6%)
Frame = +2
Query: 560 LPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNM--VRAQKIQA- 730
LP+++ P++ ++K+ TY + Y++K + R ++ N+ + ++A
Sbjct: 14 LPVVSFALYPEEILDTQWELWKK---TYRKQYNSKGDEISRRLIWEKNLKHISIHNLEAS 70
Query: 731 LDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSS--LPPPEW------ 886
L T + D+T EE ++Q+ G K+ ++S S+ L P+W
Sbjct: 71 LGVHTYELAMNHLGDMTSEE--------VVQKMTGLKVPASRSRSNDTLYIPDWEGRAPD 122
Query: 887 --DWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGC 1060
D+RKKG VT VK+QG CGSCWAFS G +EGQ K G LL+LS Q L+DC + GC
Sbjct: 123 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 182
Query: 1061 MGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQ-NEQKLAA 1237
GG +NA+ ++ G+++ED Y Y G + C +N E+ + NE+ L
Sbjct: 183 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKR 242
Query: 1238 WLAEKGPISVAINA--FGMQFYRHGI 1309
+A GPISVAI+A QFYR G+
Sbjct: 243 AVARVGPISVAIDASLTSFQFYRKGV 268
>ref|NP_001029557.1| pro-cathepsin H precursor [Bos taurus].
Length = 335
Score = 125 bits (315), Expect = 7e-29
Identities = 81/235 (34%), Positives = 119/235 (50%), Gaps = 5/235 (2%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEFRT 799
F+ ++ + + Y + EE R+ FA+N+ A + T + G+ +FSD++ +E +
Sbjct: 35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNH-TFKMGLNQFSDMSFDELKR 92
Query: 800 IYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGA-VTKVKDQGMCGSCWAFSVTGNVE 976
YL Q K + PP DWRKKG VT VK+QG CGSCW FS TG +E
Sbjct: 93 KYLWSEPQNCSATKSNYLRGTGPYPP-SMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALE 151
Query: 977 GQWFLKQGTLLSLSEQELLDCDK--VDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHL 1150
+ G L L+EQ+L+DC + + GC GGLPS A+ I+ G+ ED Y YRG
Sbjct: 152 SAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQD 211
Query: 1151 QTCSFNAEKAKVYINDSVELSQN-EQKLAAWLAEKGPISVAINAFG-MQFYRHGI 1309
C + KA ++ D ++ N E+ + +A P+S A YR GI
Sbjct: 212 GDCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGI 266
>ref|NP_001028787.1| cathepsin S precursor [Bos taurus].
Length = 331
Score = 121 bits (303), Expect = 2e-27
Identities = 75/240 (31%), Positives = 118/240 (49%), Gaps = 7/240 (2%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNM--VRAQKIQ-ALDTGTARYGVTKFSDLTEEEFRTIYL 808
TY + Y K E R ++ N+ V ++ ++ + G+ D+T EE ++
Sbjct: 34 TYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISLMS 93
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 988
+ + + R + + P DWR+KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 94 SLRVPSQWPRNVTYKSDPNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVK 153
Query: 989 LKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTC 1159
LK G L+SLS Q L+DC +KGC GG + A+ I G+++E Y Y+ C
Sbjct: 154 LKTGKLVSLSAQNLVDCSTAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMDGKC 213
Query: 1160 SFNAEKAKVYINDSVELS-QNEQKLAAWLAEKGPISVAINAFGMQFYRHGISHPLRPLCS 1336
++ + + +EL +E+ L +A KGP+SV I+A F+ + P C+
Sbjct: 214 QYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFLYKTGVYYDPSCT 273
>ref|XP_002694471.1| PREDICTED: cathepsin O preproprotein-like [Bos taurus].
Length = 375
Score = 107 bits (266), Expect = 3e-23
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Frame = +2
Query: 686 SVFANNMVRAQKIQAL---DTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAK 856
+ F ++ R + + +L + TA YG+ +FS L EEF+ IYL P
Sbjct: 96 AAFRESLNRQRYLNSLFPYENSTAVYGINQFSYLFPEEFKAIYLRSSPSRFPRFPAEEYT 155
Query: 857 SVSSLPPP-EWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELL 1033
S+S+L P +DWR K VT+V++Q CG CWAFSV G VE +K L LS Q+++
Sbjct: 156 SISNLSLPLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVI 215
Query: 1034 DCDKVDKGCMGGLPSNA-YSAIKTLGGLETEDDYSYRGHLQTCSFNAEK---AKVYINDS 1201
DC + GC GG P +A Y K L + +Y ++ C + ++ + + +
Sbjct: 216 DCSYSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSA 275
Query: 1202 VELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGI 1309
+ S E K+A L GP+ V ++A Q Y GI
Sbjct: 276 YDFSGQEDKMAEALLALGPLIVVVDAMSWQDYLGGI 311
>ref|XP_874012.3| PREDICTED: cathepsin O [Bos taurus].
Length = 384
Score = 107 bits (266), Expect = 3e-23
Identities = 71/216 (32%), Positives = 108/216 (50%), Gaps = 8/216 (3%)
Frame = +2
Query: 686 SVFANNMVRAQKIQAL---DTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAK 856
+ F ++ R + + +L + TA YG+ +FS L EEF+ IYL P
Sbjct: 105 AAFRESLNRQRYLNSLFPYENSTAVYGINQFSYLFPEEFKAIYLRSSPSRFPRFPAEEYT 164
Query: 857 SVSSLPPP-EWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELL 1033
S+S+L P +DWR K VT+V++Q CG CWAFSV G VE +K L LS Q+++
Sbjct: 165 SISNLSLPLRFDWRDKHVVTQVRNQKTCGGCWAFSVVGAVESVCAIKGQPLEVLSVQQVI 224
Query: 1034 DCDKVDKGCMGGLPSNA-YSAIKTLGGLETEDDYSYRGHLQTCSFNAEK---AKVYINDS 1201
DC + GC GG P +A Y K L + +Y ++ C + ++ + + +
Sbjct: 225 DCSYSNYGCNGGSPLSALYWLNKLQVKLVRDSEYPFQAQNGLCRYFSDSHSGSSIKGYSA 284
Query: 1202 VELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGI 1309
+ S E K+A L GP+ V ++A Q Y GI
Sbjct: 285 YDFSGQEDKMAEALLALGPLIVVVDAMSWQDYLGGI 320
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 68.2 bits (165), Expect = 2e-11
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 23/199 (11%)
Frame = +2
Query: 788 EFRTIYLNPLLQEEPGRKMRLA------------KSVSSLPPPEWDWRKKGA---VTKVK 922
E+ T+ L +++ G R+ K + LP WDWR VT V+
Sbjct: 192 EYETLTLKEMIRRGGGHSRRIPRPKPAPITAEIQKKILHLPT-SWDWRNVHGINFVTPVR 250
Query: 923 DQGMCGSCWAFSVTGNVEGQWFLKQGTLLS--LSEQELLDCDKVDKGCMGGLPSNAYSAI 1096
+QG CGSC++F+ G +E + + + LS QE++ C + +GC GG P
Sbjct: 251 NQGSCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKY 310
Query: 1097 KTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQ-----NEQKLAAWLAEKGPI 1261
GL ED + Y G C + Y ++ + NE + L +GP+
Sbjct: 311 AQDFGLVEEDCFPYTGTDSPCRLKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHQGPM 370
Query: 1262 SVAINAF-GMQFYRHGISH 1315
+VA + YR G+ H
Sbjct: 371 AVAFEVYDDFLHYRKGVYH 389
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 45,487,980
Number of extensions: 1275098
Number of successful extensions: 7137
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 7082
Number of HSP's successfully gapped: 10
Length of query: 445
Length of database: 17,681,374
Length adjustment: 105
Effective length of query: 340
Effective length of database: 14,207,134
Effective search space: 4830425560
Effective search space used: 4830425560
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CA... 634 0.0
Alignment gi|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein... 175 1e-43
Alignment gi|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiar... 159 8e-39
Alignment gi|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Ma... 143 3e-34
Alignment gi|NP_001029168.1| cathepsin K precursor [Canis lupus familiari... 127 2e-29
Alignment gi|NP_001002938.1| cathepsin S precursor [Canis lupus familiari... 119 7e-27
Alignment gi|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Ca... 117 3e-26
Alignment gi|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Ca... 107 2e-23
Alignment gi|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (C... 106 6e-23
Alignment gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr... 68 2e-11
>ref|XP_533219.2| PREDICTED: similar to Cathepsin F precursor (CATSF) [Canis
familiaris].
Length = 442
Score = 634 bits (1636), Expect = 0.0
Identities = 310/370 (83%), Positives = 328/370 (88%), Gaps = 1/370 (0%)
Frame = +2
Query: 230 ELASPELLAPARFALEMYNXXXXXXXXXXXXXXXXXXXXXXXXSLYSLKATLVEPPCNDP 409
E A PELL PARFALEMYN SL+SLKATL EPPCNDP
Sbjct: 14 EAAYPELLGPARFALEMYNRGRAAGRRAALGAVRGRVRRAGHGSLFSLKATLEEPPCNDP 73
Query: 410 TVCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTDDTNETFSSFLPLLNKDPLP 589
TVCQLP+SKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTDD NET SS LPLLNKDPLP
Sbjct: 74 TVCQLPVSKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTDDRNETLSSVLPLLNKDPLP 133
Query: 590 QDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKF 769
QDFSVKMAS+FKEFVTTYNRTY+TKEEA WRMSVF+NNMVRAQKIQALD GTA+YG+TKF
Sbjct: 134 QDFSVKMASVFKEFVTTYNRTYETKEEAEWRMSVFSNNMVRAQKIQALDRGTAQYGITKF 193
Query: 770 SDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSS-LPPPEWDWRKKGAVTKVKDQGMCGSC 946
SDLTEEEFRTIYLNPLL+E G+KMRLAKS+S PPPEWDWR KGAVTKVKDQGMCGSC
Sbjct: 194 SDLTEEEFRTIYLNPLLRENRGKKMRLAKSISDHAPPPEWDWRSKGAVTKVKDQGMCGSC 253
Query: 947 WAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKTLGGLETED 1126
WAFSVTGNVEGQWFLK+GTLLSLSEQELLDCDKVDK C+GGLPSNAYSAI TLGGLETED
Sbjct: 254 WAFSVTGNVEGQWFLKEGTLLSLSEQELLDCDKVDKACLGGLPSNAYSAIMTLGGLETED 313
Query: 1127 DYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHG 1306
DYSY+GHLQ CSF+A+KA+VYINDS+ELSQNEQKLAAWLA+KGPISVAINAFGMQFYRHG
Sbjct: 314 DYSYQGHLQACSFSAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINAFGMQFYRHG 373
Query: 1307 ISHPLRPLCS 1336
ISHPLRPLCS
Sbjct: 374 ISHPLRPLCS 383
>ref|XP_540846.2| PREDICTED: similar to cathepsin W preproprotein [Canis familiaris].
Length = 374
Score = 175 bits (443), Expect = 1e-43
Identities = 99/262 (37%), Positives = 142/262 (54%), Gaps = 6/262 (2%)
Frame = +2
Query: 566 LLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGT 745
L N+DP PQ +K +F F YNR+Y EE R+ +FA+N+ +AQ+++ D GT
Sbjct: 26 LKNQDPGPQPLELKQ--VFALFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEDEDLGT 83
Query: 746 ARYGVTKFSDLTEEEFRTIYLNPLLQEEP---GRKMRLAKSVSSLPPPEWDWRK-KGAVT 913
A +GVT FSDLTEEEF Y + + E GRK+ ++ PP DWRK G ++
Sbjct: 84 AEFGVTPFSDLTEEEFGQFYGHQRMAGEAPSVGRKVE-SEEWGEPVPPTCDWRKLPGIIS 142
Query: 914 KVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSA 1093
+K QG C CWA + GN+E W ++ + +S QELLDC + GC GG +A+
Sbjct: 143 PIKQQGNCRCCWAMAAAGNIEALWGIRYHQPVEVSVQELLDCGRCGDGCKGGFTWDAFIT 202
Query: 1094 IKTLGGLETEDDYSYRGHLQ--TCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISV 1267
+ GL + DY + G+ + C K +I D + L NEQ +A +LA KGPI+V
Sbjct: 203 VLNNSGLASAKDYPFLGNTKPHRCLAKKYKKVAWIQDFIMLQGNEQAIAWYLATKGPITV 262
Query: 1268 AINAFGMQFYRHGISHPLRPLC 1333
IN +Q Y+ G+ C
Sbjct: 263 TINMKLLQHYQKGVIQATHTTC 284
>ref|NP_001003115.1| cathepsin L1 precursor [Canis lupus familiaris].
Length = 333
Score = 159 bits (401), Expect = 8e-39
Identities = 95/247 (38%), Positives = 140/247 (56%), Gaps = 9/247 (3%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTK--- 766
F + + + ++ T+ R Y EE WR +V+ NM + ++ + ++G T
Sbjct: 21 FDQSLNAQWYQWKATHRRLYGMNEEG-WRRAVWEKNM-KMIELHNREYSQGKHGFTMAMN 78
Query: 767 -FSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGS 943
F D+T EEFR + +N ++ + + + + P DWR+KG VT VK+QG CGS
Sbjct: 79 AFGDMTNEEFRQV-MNGFQNQKHKKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGS 137
Query: 944 CWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLE 1117
CWAFS TG +EGQ F K G L+SLSEQ L+DC + ++GC GGL NA+ +K GGL+
Sbjct: 138 CWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRAQGNEGCNGGLMDNAFRYVKDNGGLD 197
Query: 1118 TEDDYSYRGH-LQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--FGM 1288
+E+ Y Y G +TC++ E + V+L Q E+ L +A GPISVAI+A
Sbjct: 198 SEESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAVATLGPISVAIDAGHQSF 257
Query: 1289 QFYRHGI 1309
QFY+ GI
Sbjct: 258 QFYKSGI 264
>ref|XP_541257.2| PREDICTED: similar to Cathepsin L precursor (Major excreted protein)
(MEP) [Canis familiaris].
Length = 333
Score = 143 bits (361), Expect = 3e-34
Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 7/246 (2%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNM-VRAQKIQALDTGTARY--GVTKFSDLTEEE 790
+ ++ + + YD K+E WR +V+ NM + Q Q G + + F D+T EE
Sbjct: 29 WSQWKEAHGKLYD-KDEEGWRRTVWERNMEMIEQHNQEYSQGEHSFTLAMNAFGDMTNEE 87
Query: 791 FRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGN 970
F+ + + +Q+ K+ A + +P DWR++G VT VKDQG C CWAFS TG
Sbjct: 88 FKQVLNDFKIQKHKKGKVFPAPLFAEVPSSV-DWREQGYVTPVKDQGQCLGCWAFSATGA 146
Query: 971 VEGQWFLKQGTLLSLSEQELLDC--DKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG 1144
+EGQ F K G L+SLSEQ L+DC + ++GC GGL A+ +K GGL++E+ Y Y
Sbjct: 147 LEGQMFRKTGKLVSLSEQNLVDCSWSQGNRGCNGGLMEYAFQYVKDNGGLDSEESYPYLA 206
Query: 1145 HLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGISHP 1318
+ C + EK+ + + E L +A GP+S A+++ QFY+ GI +
Sbjct: 207 RNEPCKYRPEKSAANVTAFWPILNEEDGLMTTVATVGPVSAAVDSSPQSFQFYKKGIYYD 266
Query: 1319 LRPLCS 1336
P CS
Sbjct: 267 --PKCS 270
>ref|NP_001029168.1| cathepsin K precursor [Canis lupus familiaris].
Length = 330
Score = 127 bits (319), Expect = 2e-29
Identities = 89/266 (33%), Positives = 137/266 (51%), Gaps = 16/266 (6%)
Frame = +2
Query: 560 LPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNM--VRAQKIQA- 730
LP+ + P++ ++K+ TY + Y++K + R ++ N+ + ++A
Sbjct: 10 LPMASFALYPEEILDTQWDLWKK---TYRKQYNSKVDELSRRLIWEKNLKHISIHNLEAS 66
Query: 731 LDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSS--LPPPEW------ 886
L T + D+T EE ++Q+ G K+ + S S+ L P+W
Sbjct: 67 LGVHTYELAMNHLGDMTSEE--------VVQKMTGLKVPPSHSRSNDTLYIPDWESRAPD 118
Query: 887 --DWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGC 1060
D+RKKG VT VK+QG CGSCWAFS G +EGQ K G LL+LS Q L+DC + GC
Sbjct: 119 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 178
Query: 1061 MGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQ-NEQKLAA 1237
GG +NA+ ++ G+++ED Y Y G ++C +N E+ + NE+ L
Sbjct: 179 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYREIPEGNEKALKR 238
Query: 1238 WLAEKGPISVAINA--FGMQFYRHGI 1309
+A GPISVAI+A QFY G+
Sbjct: 239 AVARVGPISVAIDASLTSFQFYSKGV 264
>ref|NP_001002938.1| cathepsin S precursor [Canis lupus familiaris].
Length = 331
Score = 119 bits (298), Expect = 7e-27
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 9/242 (3%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNM--VRAQKIQ-ALDTGTARYGVTKFSDLTEEEFRTIYL 808
TY++ Y + E R ++ N+ V ++ ++ + G+ D+T EE ++
Sbjct: 34 TYSKQYKEENEEVARRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTGEEVISLMG 93
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 988
+ + + R + + + P DWR+KG VT+VK QG CG+CWAFS G +E Q
Sbjct: 94 SLRVPSQWQRNVTYRSNSNQKLPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLK 153
Query: 989 LKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTC 1159
LK G L+SLS Q L+DC +KGC GG + A+ I G+++E Y Y+ C
Sbjct: 154 LKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNNGIDSEASYPYKAMNGKC 213
Query: 1160 SFNAEKAKVYINDSVELS-QNEQKLAAWLAEKGPISVAINAFGMQF--YRHGISHPLRPL 1330
++++K + EL +E L +A KGP+SVAI+A F YR G+ + P
Sbjct: 214 RYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYY--EPS 271
Query: 1331 CS 1336
C+
Sbjct: 272 CT 273
>ref|XP_536212.2| PREDICTED: similar to Cathepsin H precursor [Canis familiaris].
Length = 304
Score = 117 bits (292), Expect = 3e-26
Identities = 81/225 (36%), Positives = 112/225 (49%), Gaps = 8/225 (3%)
Frame = +2
Query: 659 TKEEARWRMSVFANNMVRAQKIQALDTG--TARYGVTKFSDLTEEEFRTIYLNPLLQEEP 832
+ EE R+ F N +KI A + G T + G+ +FSD+ E + YL Q
Sbjct: 15 SSEEYLQRLQTFVGNW---RKINAHNAGNHTFKMGLNQFSDMNFAEIKHKYLWSEPQNCS 71
Query: 833 GRKMRLAKSVSSLPPPEWDWRKKGA-VTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLL 1009
K + PP DWRKKG V+ VK+QG CGSCW FS TG +E +K G LL
Sbjct: 72 ATKGNYLRGTGPYPPFV-DWRKKGKFVSPVKNQGSCGSCWTFSTTGALESAIAIKSGKLL 130
Query: 1010 SLSEQELLDCDK--VDKGCMG-GLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKA 1180
SL+EQ+L+DC + + GC G G P A+ I+ G+ ED Y Y+G C + KA
Sbjct: 131 SLAEQQLVDCAQNFNNHGCQGYGAPLQAFEYIRYNKGIMGEDSYPYKGQDGDCKYQPSKA 190
Query: 1181 KVYINDSVELSQN-EQKLAAWLAEKGPISVAINAFG-MQFYRHGI 1309
++ D ++ N EQ + +A P+S A YR GI
Sbjct: 191 IAFVKDVANITINDEQAMVEAVALYNPVSFAFEVTSDFMMYRKGI 235
>ref|XP_539782.2| PREDICTED: similar to Cathepsin O precursor [Canis familiaris].
Length = 518
Score = 107 bits (268), Expect = 2e-23
Identities = 63/197 (31%), Positives = 101/197 (51%), Gaps = 5/197 (2%)
Frame = +2
Query: 734 DTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPP-EWDWRKKGAV 910
+ +A YG+ +FS L+ EEF+ IYL P + S+ ++ P +DWR K V
Sbjct: 256 ENSSAVYGINQFSYLSPEEFKAIYLRSKPSRSPRYPAEVRTSIRNVSLPLRFDWRDKRVV 315
Query: 911 TKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYS 1090
T+V++Q CG CWAFSV G VE + +K L +S Q+++DC + GC GG NA +
Sbjct: 316 TQVRNQQTCGGCWAFSVVGAVESAYAIKGKPLADISVQQVIDCSYNNYGCSGGSTLNALN 375
Query: 1091 AI-KTLGGLETEDDYSYRGHLQTCSFNAEKAKVYI---NDSVELSQNEQKLAAWLAEKGP 1258
+ KT L + +Y ++ C + ++ + + + S E ++A L GP
Sbjct: 376 WLNKTQVKLVRDSEYPFKAQNGLCHYFSDSYSGFSIRGYSAYDFSDQEDEMAKVLLTFGP 435
Query: 1259 ISVAINAFGMQFYRHGI 1309
+ V ++A Q Y GI
Sbjct: 436 LVVVVDAVSWQDYLGGI 452
>ref|XP_855060.1| PREDICTED: similar to Cathepsin L2 precursor (Cathepsin V) (Cathepsin
U) [Canis familiaris].
Length = 289
Score = 106 bits (264), Expect = 6e-23
Identities = 65/173 (37%), Positives = 96/173 (55%), Gaps = 6/173 (3%)
Frame = +2
Query: 644 NRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTK----FSDLTEEEFRTIYLN 811
+R Y EE WR +V+ NM + ++ + ++G T F +T EEFR + +N
Sbjct: 33 HRLYAMNEEG-WRRAVWEKNM-KMIELHNREYSQGKHGFTMAMNAFGYMTNEEFRQV-MN 89
Query: 812 PLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFL 991
++ + + + + P DWR+KG VT VK+QG CGSCWAFS TG+++GQ F
Sbjct: 90 GFQNQKHKKGKVFQEPLFAEIPKSVDWREKGYVTPVKNQGHCGSCWAFSATGDLKGQMFQ 149
Query: 992 KQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG 1144
K G L L+DC + +KGC GGL NA+ +K GGL++E+ Y Y G
Sbjct: 150 KTGKL------NLVDCYQAQGNKGCNGGLMDNAFQYVKDNGGLDSEECYLYLG 196
>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I) (DPPI)
(Cathepsin C) (Cathepsin J) (Dipeptidyl transferase),
partial [Canis familiaris].
Length = 481
Score = 67.8 bits (164), Expect = 2e-11
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 26/228 (11%)
Frame = +2
Query: 722 IQALDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKM----------RLAKSVSSL 871
++A++T + T++ E+ T+ L +++ GRK+ + + +S L
Sbjct: 196 VKAINTIQKSWTATRYI-----EYETLTLRDMMRRAGGRKIPRPKPTPLTAEIHEEISRL 250
Query: 872 PPPEWDWRK---KGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLS--LSEQELLD 1036
P WDWR V+ V++Q CGSC+AF+ T +E + + + LS QE++
Sbjct: 251 PT-SWDWRNVRGTNFVSPVRNQASCGSCYAFASTVMLEARIRILTNNTQTPILSPQEIVS 309
Query: 1037 CDKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCS----FNAEKAKVYINDSV 1204
C + +GC GG P GL E +SY G C F+ ++ +
Sbjct: 310 CSQYAQGCEGGFPYLIAGKYAQDFGLVDEACFSYAGSDSPCKPNDCFHYYSSEYHYVGGF 369
Query: 1205 ELSQNEQKLAAWLAEKGPISVAINAFGMQF-------YRHGISHPLRP 1327
+ NE + L GP++VA + F Y G+ P+ P
Sbjct: 370 YGACNEALMKLELVRHGPMAVAFEVYDDFFHYQKGIYYHTGLRDPINP 417
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 47,622,150
Number of extensions: 1325566
Number of successful extensions: 7372
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 7246
Number of HSP's successfully gapped: 11
Length of query: 445
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 339
Effective length of database: 15,340,888
Effective search space: 5200561032
Effective search space used: 5200561032
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa]. 680 0.0
Alignment gi|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]. 173 2e-43
Alignment gi|NP_999057.1| cathepsin L1 precursor [Sus scrofa]. 156 3e-38
Alignment gi|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa]. 144 1e-34
Alignment gi|NP_999094.1| pro-cathepsin H precursor [Sus scrofa]. 133 2e-31
Alignment gi|NP_999467.1| cathepsin K precursor [Sus scrofa]. 128 8e-30
Alignment gi|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa]. 118 7e-27
Alignment gi|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa]. 118 7e-27
Alignment gi|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus s... 69 8e-12
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 64 1e-10
>ref|XP_003122543.2| PREDICTED: cathepsin F [Sus scrofa].
Length = 490
Score = 680 bits (1754), Expect = 0.0
Identities = 344/399 (86%), Positives = 345/399 (86%), Gaps = 30/399 (7%)
Frame = +2
Query: 230 ELASPELLAPARFALEMYNXXXXXXXXXXXXXXXXXXXXXXXXSLYSLKATLVEPPCNDP 409
ELASPELLAPARFALEMYN SLYSLKATLVEPPCNDP
Sbjct: 33 ELASPELLAPARFALEMYNRGRAAGTRAALRAVRGRVRRAGRGSLYSLKATLVEPPCNDP 92
Query: 410 TVCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVT-------------------- 529
TVCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVT
Sbjct: 93 TVCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTGAGTAQDAGRAQVTPHLGFS 152
Query: 530 ----------DDTNETFSSFLPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARW 679
DDTNETFSSFLPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARW
Sbjct: 153 PNSSLLEPSPDDTNETFSSFLPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARW 212
Query: 680 RMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKS 859
RMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKS
Sbjct: 213 RMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKS 272
Query: 860 VSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDC 1039
VSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDC
Sbjct: 273 VSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDC 332
Query: 1040 DKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQN 1219
DKVDKGCMGGLPSNAYSAIKTLGGLETE+DYSYRGHLQTCSFNAEKAKVYINDSVELSQN
Sbjct: 333 DKVDKGCMGGLPSNAYSAIKTLGGLETEEDYSYRGHLQTCSFNAEKAKVYINDSVELSQN 392
Query: 1220 EQKLAAWLAEKGPISVAINAFGMQFYRHGISHPLRPLCS 1336
EQKLAAWLAEKGPISVAINAFGMQFYRHGISHPLRPLCS
Sbjct: 393 EQKLAAWLAEKGPISVAINAFGMQFYRHGISHPLRPLCS 431
>ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa].
Length = 367
Score = 173 bits (438), Expect = 2e-43
Identities = 97/261 (37%), Positives = 143/261 (54%), Gaps = 5/261 (1%)
Frame = +2
Query: 566 LLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGT 745
L ++DP PQ +K +F F YNR+Y E R+ +FA N+ +AQ++Q D GT
Sbjct: 26 LRSQDPGPQPMGLK--EVFTLFQIQYNRSYSNPAEHARRLDIFAQNLAKAQRLQEEDLGT 83
Query: 746 ARYGVTKFSDLTEEEFRTIYLNPL-LQEEPGRKMRLAKSVSSLPPPE-WDWRKK-GAVTK 916
A +GVT FSDLTEEEF ++ + + P +++ S P+ DWRKK G ++
Sbjct: 84 AEFGVTPFSDLTEEEFGQLHGHHWGAGKAPSMGIKVGSEESGETVPQSCDWRKKPGVISA 143
Query: 917 VKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAI 1096
+K Q C CWA + NVE QW +K + LS Q++LDCD+ GC GG +A+ +
Sbjct: 144 IKHQKDCNCCWAMAAVDNVEAQWAIKYHQAVQLSVQQVLDCDRCGNGCNGGFVWDAFLTV 203
Query: 1097 KTLGGLETEDDYSYRGHLQT--CSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVA 1270
GL +E DY Y+G ++T C + +I D + L EQ +A +LA +GPI+V
Sbjct: 204 LNTSGLASEQDYPYKGTVKTHRCLAKQHRKVAWIQDFLMLQFCEQSIARYLATEGPITVT 263
Query: 1271 INAFGMQFYRHGISHPLRPLC 1333
INA +Q Y+ G+ C
Sbjct: 264 INAGLLQQYKRGVIRATPATC 284
>ref|NP_999057.1| cathepsin L1 precursor [Sus scrofa].
Length = 334
Score = 156 bits (394), Expect = 3e-38
Identities = 96/242 (39%), Positives = 137/242 (56%), Gaps = 9/242 (3%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYG----VTKFSDLTEEEFRTIY 805
T+ R Y EE WR +V+ NM + ++ + ++G + F D+T EEFR +
Sbjct: 35 THGRLYGMNEEG-WRRAVWEKNM-KMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQV- 91
Query: 806 LNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 985
+N ++ + +S+ P DWR+KG VT VK+QG CGSCWAFS TG +EGQ
Sbjct: 92 MNGFQNQKHKKGKVFHESLVLEVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQM 151
Query: 986 FLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG-HLQT 1156
F K G L+SLSEQ L+DC + ++GC GGL NA+ +K GGL+TE+ Y Y G +
Sbjct: 152 FRKTGKLVSLSEQNLVDCSRPQGNQGCNGGLMDNAFQYVKDNGGLDTEESYPYLGRETNS 211
Query: 1157 CSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--FGMQFYRHGISHPLRPL 1330
C++ E + V++ Q E+ L +A GPISVAI+A QFY+ GI + P
Sbjct: 212 CTYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYD--PD 269
Query: 1331 CS 1336
CS
Sbjct: 270 CS 271
>ref|XP_003130681.1| PREDICTED: cathepsin L1-like [Sus scrofa].
Length = 332
Score = 144 bits (363), Expect = 1e-34
Identities = 90/240 (37%), Positives = 128/240 (53%), Gaps = 7/240 (2%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNMVRAQKIQ---ALDTGTARYGVTKFSDLTEEEFRTIYL 808
T+ + Y EE R R +++ NM ++ + + F D+T EEFR +
Sbjct: 35 THRKLYGLNEEGR-RRAIWEKNMKMIERHNWEHRQGKHSFTMAMNAFGDMTNEEFRKT-M 92
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 988
N ++ + + S+L P DWR+KG VT VK+QG CGSCWAFS TG +EGQ F
Sbjct: 93 NGFQNQKHKKGKVFLDAGSALTPHSVDWREKGYVTAVKNQGHCGSCWAFSATGALEGQMF 152
Query: 989 LKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCS 1162
K L+SLSEQ L+DC + ++GC GGL NA+ IK GGL++E+ Y Y G +C
Sbjct: 153 RKTSKLISLSEQNLVDCSWPEGNEGCNGGLMDNAFQYIKDNGGLDSEESYPYFGKDGSCK 212
Query: 1163 FNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGISHPLRPLCS 1336
+ + + V++ + E+ L +A GPISV I+A QFY GI P CS
Sbjct: 213 YKPQSSAANDTGYVDIPKQEKALMKAVATVGPISVGIDASHESFQFYSTGIY--FEPQCS 270
>ref|NP_999094.1| pro-cathepsin H precursor [Sus scrofa].
Length = 335
Score = 133 bits (335), Expect = 2e-31
Identities = 86/237 (36%), Positives = 124/237 (52%), Gaps = 7/237 (2%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTG--TARYGVTKFSDLTEEEF 793
FK ++ + + Y EE R+ VF +N +KI A + G T + G+ +FSD++ +E
Sbjct: 35 FKSWMVQHQKKYSL-EEYHHRLQVFVSNW---RKINAHNAGNHTFKLGLNQFSDMSFDEI 90
Query: 794 RTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGA-VTKVKDQGMCGSCWAFSVTGN 970
R YL Q K + PP DWRKKG V+ VK+QG CGSCW FS TG
Sbjct: 91 RHKYLWSEPQNCSATKGNYLRGTGPYPP-SMDWRKKGNFVSPVKNQGSCGSCWTFSTTGA 149
Query: 971 VEGQWFLKQGTLLSLSEQELLDCDK--VDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG 1144
+E + G +LSL+EQ+L+DC + + GC GGLPS A+ I+ G+ ED Y Y+G
Sbjct: 150 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKG 209
Query: 1145 HLQTCSFNAEKAKVYINDSVELSQN-EQKLAAWLAEKGPISVAINAFG-MQFYRHGI 1309
C F +KA ++ D ++ N E+ + +A P+S A YR GI
Sbjct: 210 QDDHCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGI 266
>ref|NP_999467.1| cathepsin K precursor [Sus scrofa].
Length = 330
Score = 128 bits (321), Expect = 8e-30
Identities = 88/266 (33%), Positives = 137/266 (51%), Gaps = 16/266 (6%)
Frame = +2
Query: 560 LPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNM--VRAQKIQA- 730
LP+++ P++ ++K+ TY + Y++K + R ++ N+ + ++A
Sbjct: 10 LPVMSSALYPEEILDTQWELWKK---TYRKQYNSKVDEISRRLIWEKNLKHISIHNLEAS 66
Query: 731 LDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSS--LPPPEW------ 886
L T + D+T EE ++Q+ G K+ + S S+ L P+W
Sbjct: 67 LGVHTYELAMNHLGDMTSEE--------VVQKMTGLKVPPSHSRSNDTLYIPDWEGRTPD 118
Query: 887 --DWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGC 1060
D+RKKG VT VK+QG CGSCWAFS G +EGQ K G LL+LS Q L+DC + GC
Sbjct: 119 SIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGC 178
Query: 1061 MGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQ-NEQKLAA 1237
GG +NA+ ++ G+++ED Y Y G + C +N E+ + NE+ L
Sbjct: 179 GGGYMTNAFQYVQKNRGIDSEDAYPYVGQDENCMYNPTGKAAKCRGYREIPEGNEKALKR 238
Query: 1238 WLAEKGPISVAINA--FGMQFYRHGI 1309
+A GP+SVAI+A QFY G+
Sbjct: 239 AVARVGPVSVAIDASLTSFQFYSKGV 264
>ref|XP_001929706.1| PREDICTED: cathepsin S [Sus scrofa].
Length = 331
Score = 118 bits (296), Expect = 7e-27
Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 10/243 (4%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARY----GVTKFSDLTEEEFRTIY 805
TY + Y K E R ++ N+ + + L+ + G+ D+T EE ++
Sbjct: 34 TYGKQYKEKNEEVARRLIWEKNL-KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLM 92
Query: 806 LNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 985
+ + R + + + P DWR+KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 93 SCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQV 152
Query: 986 FLKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQT 1156
+K G L+SLS Q L+DC +KGC GG + A+ I G+++E Y Y+
Sbjct: 153 KMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGK 212
Query: 1157 CSFNAEKAKVYINDSVELS-QNEQKLAAWLAEKGPISVAINA--FGMQFYRHGISHPLRP 1327
C ++++ + EL +E L +A KGP+SVAI+A FYR G+ + P
Sbjct: 213 CKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYD--P 270
Query: 1328 LCS 1336
C+
Sbjct: 271 SCT 273
>ref|XP_003355243.1| PREDICTED: cathepsin S-like [Sus scrofa].
Length = 331
Score = 118 bits (296), Expect = 7e-27
Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 10/243 (4%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARY----GVTKFSDLTEEEFRTIY 805
TY + Y K E R ++ N+ + + L+ + G+ D+T EE ++
Sbjct: 34 TYGKQYKEKNEEVARRLIWEKNL-KTVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVISLM 92
Query: 806 LNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 985
+ + R + + + P DWR+KG VT+VK QG CGSCWAFS G +E Q
Sbjct: 93 SCVRVPSQWPRNVTYKSNPNQKLPDSMDWREKGCVTEVKYQGSCGSCWAFSAVGALEAQV 152
Query: 986 FLKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQT 1156
+K G L+SLS Q L+DC +KGC GG + A+ I G+++E Y Y+
Sbjct: 153 KMKTGRLVSLSAQNLVDCSTEKYRNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAVDGK 212
Query: 1157 CSFNAEKAKVYINDSVELS-QNEQKLAAWLAEKGPISVAINA--FGMQFYRHGISHPLRP 1327
C ++++ + EL +E L +A KGP+SVAI+A FYR G+ + P
Sbjct: 213 CKYDSKNRAATCSRYTELPFADEYALKEAVANKGPVSVAIDAKHSSFFFYRSGVYYD--P 270
Query: 1328 LCS 1336
C+
Sbjct: 271 SCT 273
>ref|XP_003129045.2| PREDICTED: tryptophan 2,3-dioxygenase [Sus scrofa].
Length = 411
Score = 68.6 bits (166), Expect = 8e-12
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Frame = +2
Query: 935 CGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNA-YSAIKTLGG 1111
CG CWAFSV VE + +K L LS Q+++DC + GC GG NA Y KT
Sbjct: 219 CGGCWAFSVVSAVESAYAIKGQPLEVLSVQQVIDCSYNNYGCNGGSTLNALYWLNKTQVK 278
Query: 1112 LETEDDYSYRG-----HLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAIN 1276
+ ++ +Y ++ H +CS + K Y + + S E ++A L GP+ V ++
Sbjct: 279 VVSDSEYPFKAQNGLCHYFSCSHSGVSIKDY--SAYDFSGQEDEMAKTLLTLGPLIVIVD 336
Query: 1277 AFGMQFYRHGI 1309
A Q Y GI
Sbjct: 337 AVSWQDYLGGI 347
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 64.3 bits (155), Expect = 1e-10
Identities = 53/198 (26%), Positives = 80/198 (40%), Gaps = 22/198 (11%)
Frame = +2
Query: 788 EFRTIYLNPLLQEEPGRKMRLAK-----------SVSSLPPPEWDWRK---KGAVTKVKD 925
E+ T+ L + Q G RL + S P WDWR VT V++
Sbjct: 192 EYETLTLKEMTQRGGGYNQRLPRPKPAPITAEIQEKSLHLPASWDWRNVRGTNFVTPVRN 251
Query: 926 QGMCGSCWAFSVTGNVEGQWFLKQGTLLS--LSEQELLDCDKVDKGCMGGLPSNAYSAIK 1099
Q CGSC++F+ G +E + + + LS QE++ C + +GC GG P
Sbjct: 252 QASCGSCYSFASMGMMEARIRILTNNTQTPILSPQEVVSCSQYAQGCAGGFPYLIAGKYA 311
Query: 1100 TLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQ-----NEQKLAAWLAEKGPIS 1264
GL E + Y G C+ + Y ++ + NE + L GP++
Sbjct: 312 QDFGLVEEACFPYTGTDSPCTVKEGCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMA 371
Query: 1265 VAINAF-GMQFYRHGISH 1315
VA + YR GI H
Sbjct: 372 VAFEVYDDFLHYRKGIYH 389
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 29,477,974
Number of extensions: 829047
Number of successful extensions: 4655
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4604
Number of HSP's successfully gapped: 12
Length of query: 445
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 343
Effective length of database: 8,804,438
Effective search space: 3019922234
Effective search space used: 3019922234
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_063914.1| cathepsin F precursor [Mus musculus]. 580 e-165
Alignment gi|NP_034115.2| cathepsin W preproprotein [Mus musculus]. 171 9e-43
Alignment gi|NP_034114.1| cathepsin L1 preproprotein [Mus musculus]. 158 1e-38
Alignment gi|NP_062412.1| cathepsin 7 [Mus musculus]. 140 2e-33
Alignment gi|NP_081620.2| cathepsin L-like 3 [Mus musculus]. 140 2e-33
Alignment gi|NP_067420.1| cathepsin 6 [Mus musculus]. 140 2e-33
Alignment gi|NP_835199.1| testin-2 precursor [Mus musculus]. 138 9e-33
Alignment gi|NP_064680.1| cathepsin R precursor [Mus musculus]. 138 9e-33
Alignment gi|NP_036137.1| cathepsin J [Mus musculus]. 137 2e-32
Alignment gi|NP_083912.2| cathepsin Q [Mus musculus]. 135 9e-32
>ref|NP_063914.1| cathepsin F precursor [Mus musculus].
Length = 462
Score = 580 bits (1494), Expect = e-165
Identities = 276/368 (75%), Positives = 317/368 (86%)
Frame = +2
Query: 233 LASPELLAPARFALEMYNXXXXXXXXXXXXXXXXXXXXXXXXSLYSLKATLVEPPCNDPT 412
L+S ELLAPARFAL+MYN SL+SL+ATL EPPCNDP
Sbjct: 36 LSSQELLAPARFALDMYNYGRAAGTRAVLGAVRGRVRRAGQGSLFSLEATLEEPPCNDPL 95
Query: 413 VCQLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVTDDTNETFSSFLPLLNKDPLPQ 592
VC LP +KKT+LCSFEVL+EL +H+LLRRDC PV+ KVT+ N TFSSFLPLL+KDPLPQ
Sbjct: 96 VCPLPETKKTVLCSFEVLEELKEHLLLRRDCSPVNAKVTEFRNATFSSFLPLLDKDPLPQ 155
Query: 593 DFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKFS 772
DFSVKMA +FK+F+TTYNRTY+++EEA+WR++VFA NM+RAQKIQALD GTA+YG+TKFS
Sbjct: 156 DFSVKMAPLFKDFMTTYNRTYESREEAQWRLTVFARNMIRAQKIQALDRGTAQYGITKFS 215
Query: 773 DLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWA 952
DLTEEEF TIYLNPLLQ+E GRKM AKS++ L PPEWDWRKKGAVT+VK+QGMCGSCWA
Sbjct: 216 DLTEEEFHTIYLNPLLQKESGRKMSPAKSINDLAPPEWDWRKKGAVTEVKNQGMCGSCWA 275
Query: 953 FSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKTLGGLETEDDY 1132
FSVTGNVEGQWFL +GTLLSLSEQELLDCDKVDK C+GGLPSNAY+AIK LGGLETEDDY
Sbjct: 276 FSVTGNVEGQWFLNRGTLLSLSEQELLDCDKVDKACLGGLPSNAYAAIKNLGGLETEDDY 335
Query: 1133 SYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGIS 1312
Y+GH+QTC+F+A+ AKVYINDSVELS+NE K+AAWLA+KGPISVAINAFGMQFYRHGI+
Sbjct: 336 GYQGHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINAFGMQFYRHGIA 395
Query: 1313 HPLRPLCS 1336
HP RPLCS
Sbjct: 396 HPFRPLCS 403
>ref|NP_034115.2| cathepsin W preproprotein [Mus musculus].
Length = 371
Score = 171 bits (434), Expect = 9e-43
Identities = 99/256 (38%), Positives = 139/256 (54%), Gaps = 8/256 (3%)
Frame = +2
Query: 566 LLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGT 745
LL KD P+ +K +FK F +NR+Y E R+S+FA+N+ +AQ++Q D GT
Sbjct: 24 LLTKDAGPRPLELK--EVFKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGT 81
Query: 746 ARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLP-----PPEWDWRK-KGA 907
A +G T FSDLTEEEF +Y + P R + K V S P DWRK K
Sbjct: 82 AEFGETPFSDLTEEEFGQLYGQ---ERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNI 138
Query: 908 VTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAY 1087
++ VK+QG C CWA + N++ W +K + +S QELLDC++ GC GG +AY
Sbjct: 139 ISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCERCGNGCNGGFVWDAY 198
Query: 1088 SAIKTLGGLETEDDYSYRGHLQ--TCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPI 1261
+ GL +E DY ++G + C K +I D LS NEQ +A +LA GPI
Sbjct: 199 LTVLNNSGLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPI 258
Query: 1262 SVAINAFGMQFYRHGI 1309
+V IN +Q Y+ G+
Sbjct: 259 TVTINMKLLQHYQKGV 274
>ref|NP_034114.1| cathepsin L1 preproprotein [Mus musculus].
Length = 334
Score = 158 bits (399), Expect = 1e-38
Identities = 99/256 (38%), Positives = 143/256 (55%), Gaps = 9/256 (3%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYG----VT 763
F ++ + ++ +T+ R Y T EE WR +++ NM R ++ + ++G +
Sbjct: 21 FDQTFSAEWHQWKSTHRRLYGTNEE-EWRRAIWEKNM-RMIQLHNGEYSNGQHGFSMEMN 78
Query: 764 KFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLP-PPEWDWRKKGAVTKVKDQGMCG 940
F D+T EEFR + + + +K RL + L P DWR+KG VT VK+QG CG
Sbjct: 79 AFGDMTNEEFRQVVNG--YRHQKHKKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCG 136
Query: 941 SCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGL 1114
SCWAFS +G +EGQ FLK G L+SLSEQ L+DC ++GC GGL A+ IK GGL
Sbjct: 137 SCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHAQGNQGCNGGLMDFAFQYIKENGGL 196
Query: 1115 ETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GM 1288
++E+ Y Y +C + AE A V++ Q E+ L +A GPISVA++A +
Sbjct: 197 DSEESYPYEAKDGSCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSL 256
Query: 1289 QFYRHGISHPLRPLCS 1336
QFY GI + P CS
Sbjct: 257 QFYSSGIYY--EPNCS 270
>ref|NP_062412.1| cathepsin 7 [Mus musculus].
Length = 331
Score = 140 bits (354), Expect = 2e-33
Identities = 93/249 (37%), Positives = 130/249 (52%), Gaps = 11/249 (4%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVT----KFSDLTEE 787
++E+ + +RTY +EE + R +V+ N V+ K ++ G T +F D+T E
Sbjct: 29 WEEWKRSNDRTYSPEEEKQ-RRAVWEGN-VKWIKQHIMENGLWMNNFTIEMNEFGDMTGE 86
Query: 788 EFRTIYLNPLLQEEPGRKMRLAKSVSSLPP---PEWDWRKKGAVTKVKDQGMCGSCWAFS 958
E + +L E +R K + P P DWRK+G VT V+ QG CG+CWAFS
Sbjct: 87 EMK------MLTESSSYPLRNGKHIQKRNPKIPPTLDWRKEGYVTPVRRQGSCGACWAFS 140
Query: 959 VTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDY 1132
VT +EGQ F K G L+ LS Q L+DC KGC GG P +A+ +K GGLE E Y
Sbjct: 141 VTACIEGQLFKKTGKLIPLSVQNLMDCSVSYGTKGCDGGRPYDAFQYVKNNGGLEAEATY 200
Query: 1133 SYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQF--YRHG 1306
Y + C + E++ V +N + +NE+ L L GPI+VAI+ F YR G
Sbjct: 201 PYEAKAKHCRYRPERSVVKVNRFFVVPRNEEALLQALVTHGPIAVAIDGSHASFHSYRGG 260
Query: 1307 ISHPLRPLC 1333
I H P C
Sbjct: 261 IYH--EPKC 267
>ref|NP_081620.2| cathepsin L-like 3 [Mus musculus].
Length = 331
Score = 140 bits (353), Expect = 2e-33
Identities = 91/254 (35%), Positives = 133/254 (52%), Gaps = 13/254 (5%)
Frame = +2
Query: 614 SIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYG----VTKFSDLT 781
++++E+ T + +TY+ +E + R +V+ NN + + D ++G + F DLT
Sbjct: 27 AVWEEWKTKHKKTYNMNDEGQKR-AVWENNK-KMIDLHNEDYLKGKHGFSLEMNAFGDLT 84
Query: 782 EEEFRTIYLNPLLQEEPGRKMRLAKSVSSLP-----PPEWDWRKKGAVTKVKDQGMCGSC 946
EFR L+ G+K ++ V P P DWR G VT VKDQG CGSC
Sbjct: 85 NTEFRE-----LMTGFQGQKTKMMMKVFQEPLLGDVPKSVDWRDHGYVTPVKDQGSCGSC 139
Query: 947 WAFSVTGNVEGQWFLKQGTLLSLSEQELLDC--DKVDKGCMGGLPSNAYSAIKTLGGLET 1120
WAFS G++EGQ F K G L+ LS Q L+DC + ++GC GGLP A+ +K GGL+T
Sbjct: 140 WAFSAVGSLEGQMFRKTGKLVPLSVQNLVDCSWSQGNQGCDGGLPDLAFQYVKDNGGLDT 199
Query: 1121 EDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--FGMQF 1294
Y Y TC +N + + + V + +E L +A GPISV I+ QF
Sbjct: 200 SVSYPYEALNGTCRYNPKNSAATVTGFVNVQSSEDALMKAVATVGPISVGIDTKHKSFQF 259
Query: 1295 YRHGISHPLRPLCS 1336
Y+ G+ + P CS
Sbjct: 260 YKEGMYY--EPDCS 271
>ref|NP_067420.1| cathepsin 6 [Mus musculus].
Length = 334
Score = 140 bits (353), Expect = 2e-33
Identities = 92/240 (38%), Positives = 123/240 (51%), Gaps = 8/240 (3%)
Frame = +2
Query: 641 YNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVT----KFSDLTEEEFRTIYL 808
Y ++Y T EE R +++ NM R K+ + + T +F DLT EE R +
Sbjct: 36 YEKSY-TMEEEGLRRAIWEENM-RMIKLHNWENSLGKNNFTLKMNEFGDLTPEELRKMMN 93
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 988
N + RK+ ++V + P DWRKKG VT+V+ Q C SCWAF+V G +EGQ F
Sbjct: 94 NFPIWSHKKRKIIRKRAVGDVLPKFVDWRKKGYVTRVRRQKFCNSCWAFAVNGAIEGQMF 153
Query: 989 LKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTCS 1162
K G L LS Q L+DC K + GC G P AY + GGLE E Y Y G C
Sbjct: 154 KKTGKLTPLSVQNLVDCTKTQGNDGCQWGDPYIAYEYVLNNGGLEAEATYPYEGKEGPCR 213
Query: 1163 FNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGISHPLRPLCS 1336
+N + +K I V L ++E L +A GPIS A++A FY GI H +P CS
Sbjct: 214 YNPKNSKAEITGFVSLPESEDILMEAVATIGPISAAVDASFNRFSFYDGGIYH--QPNCS 271
>ref|NP_835199.1| testin-2 precursor [Mus musculus].
Length = 333
Score = 138 bits (348), Expect = 9e-33
Identities = 92/247 (37%), Positives = 134/247 (54%), Gaps = 9/247 (3%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANN--MVRAQKIQALDTGTARYGVTK--FSDLTEE 787
+ E+ T + + Y+ EE R R +V+ N M+ + L+ G + +T F DLT
Sbjct: 29 WNEWRTKHGKAYNVNEE-RLRRAVWEKNFKMIELHNWEYLE-GKHDFTMTMNAFGDLTNT 86
Query: 788 EFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEW-DWRKKGAVTKVKDQGMCGSCWAFSVT 964
EF + + + + ++M + + L P++ DWR G VT VK+QG C S WAFS T
Sbjct: 87 EF--VKMMTGFRRQKIKRMHVFQDHQFLYVPKYVDWRMLGYVTPVKNQGYCASSWAFSAT 144
Query: 965 GNVEGQWFLKQGTLLSLSEQELLDC--DKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSY 1138
G++EGQ F K G L+ LSEQ LLDC V C GG NA+ +K GGL TE+ Y Y
Sbjct: 145 GSLEGQMFKKTGRLVPLSEQNLLDCMGSNVTHDCSGGFMQNAFQYVKDNGGLATEESYPY 204
Query: 1139 RGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQFYRHGIS 1312
G + C ++AE + + D V++ E+ L +A+ GPISVA++A QFY GI
Sbjct: 205 IGPGRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIY 264
Query: 1313 HPLRPLC 1333
+ P C
Sbjct: 265 Y--EPQC 269
>ref|NP_064680.1| cathepsin R precursor [Mus musculus].
Length = 334
Score = 138 bits (348), Expect = 9e-33
Identities = 89/247 (36%), Positives = 127/247 (51%), Gaps = 8/247 (3%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVT----KFSDLTEE 787
++++ YN++Y KEE R V ++ K+ + + G T +F D T+E
Sbjct: 29 WQDWKIKYNKSYSLKEEKLKR--VVWEEKLKMIKLHNRENSLGKNGFTMKMNEFGDQTDE 86
Query: 788 EFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTG 967
EFR + + + K + + S+ P DWRKKG VT V+ QG C +CWAF+VTG
Sbjct: 87 EFRKMMIEISVWTHREGKSIMKREAGSILPKFVDWRKKGYVTPVRRQGDCDACWAFAVTG 146
Query: 968 NVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLETEDDYSYR 1141
+E Q + G L LS Q L+DC K + GC+GG NA+ + GGLE+E Y Y
Sbjct: 147 AIEAQAIWQTGKLTPLSVQNLVDCSKPQGNNGCLGGDTYNAFQYVLHNGGLESEATYPYE 206
Query: 1142 GHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQF--YRHGISH 1315
G C +N + +K I V L Q+E L A +A GPI+ I+A F Y+ GI H
Sbjct: 207 GKDGPCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYH 266
Query: 1316 PLRPLCS 1336
P CS
Sbjct: 267 --EPNCS 271
>ref|NP_036137.1| cathepsin J [Mus musculus].
Length = 333
Score = 137 bits (345), Expect = 2e-32
Identities = 94/255 (36%), Positives = 129/255 (50%), Gaps = 11/255 (4%)
Frame = +2
Query: 605 KMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQ---KIQALDTGTARYGVTKFSD 775
K+ + +K++ T Y ++Y +E R +V+ NM + K +L + KF D
Sbjct: 24 KLDAEWKDWKTKYAKSYSPEEALR--RAVWEENMRMIKLHNKENSLGKNNFTMKMNKFGD 81
Query: 776 LTEEEFRTIYLN---PLLQEEPGRKMRLAKSVSSLPPPEW-DWRKKGAVTKVKDQGMCGS 943
T EEFR N P +P A++ S+ P++ DWR++G VT V++QG CGS
Sbjct: 82 QTSEEFRKSIDNIPIPAAMTDPH-----AQNHVSIGLPDYKDWREEGYVTPVRNQGKCGS 136
Query: 944 CWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGLE 1117
CWAF+ G +EGQ F K G L LS Q LLDC K +KGC G A+ + GLE
Sbjct: 137 CWAFAAAGAIEGQMFWKTGNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLE 196
Query: 1118 TEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAF--GMQ 1291
E Y Y G C + +E A I D V L NE L +A GP+S AI+A +
Sbjct: 197 AEATYPYEGKDGPCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFR 256
Query: 1292 FYRHGISHPLRPLCS 1336
FY GI + P CS
Sbjct: 257 FYNGGIYY--EPNCS 269
>ref|NP_083912.2| cathepsin Q [Mus musculus].
Length = 343
Score = 135 bits (339), Expect = 9e-32
Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 17/256 (6%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQ---KIQALDTGTARYGVTKFSDLTEEE 790
+KE++ ++ + Y +EE R +++ N+ R + + +L T G+ F+D+T+EE
Sbjct: 29 WKEWMGSFEKLYSPEEEVL-RRAIWEENVKRIKLHNRENSLGKNTYTMGLNGFADMTDEE 87
Query: 791 FRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEW----------DWRKKGAVTKVKDQGMCG 940
F I + L + RK +++ S P W DWR +G VT+V++Q C
Sbjct: 88 FMNIVIGATLPVDNTRKSLWKRALGSPFPKSWYWKDALPKFVDWRNEGYVTRVRNQRNCN 147
Query: 941 SCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGL 1114
SCWAF VTG +EGQ F K G L+ LS Q L+DC + ++GC G N + + GGL
Sbjct: 148 SCWAFPVTGAIEGQMFKKTGKLIPLSVQNLVDCSRPQGNRGCRWGNTYNGFQYVLHNGGL 207
Query: 1115 ETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAIN--AFGM 1288
E + Y Y G C +N + + I V L ++E L +A KGPI+ I+ +
Sbjct: 208 EAQATYPYEGKEGLCRYNPKNSAAKITGFVVLPESEDVLMDAVATKGPIATGIHVVSSSF 267
Query: 1289 QFYRHGISHPLRPLCS 1336
+FY G+ + P C+
Sbjct: 268 RFYDGGVYY--EPNCT 281
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 38,804,283
Number of extensions: 1042434
Number of successful extensions: 5478
Number of sequences better than 1.0e-05: 22
Number of HSP's gapped: 5397
Number of HSP's successfully gapped: 22
Length of query: 445
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 340
Effective length of database: 12,463,779
Effective search space: 4237684860
Effective search space used: 4237684860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003784.2| cathepsin F precursor [Homo sapiens]. 587 e-168
Alignment gi|NP_001326.2| cathepsin W preproprotein [Homo sapiens]. 169 7e-42
Alignment gi|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens]. 148 1e-35
Alignment gi|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens]. 148 1e-35
Alignment gi|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens]. 139 6e-33
Alignment gi|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens]. 139 6e-33
Alignment gi|NP_000387.1| cathepsin K preproprotein [Homo sapiens]. 128 1e-29
Alignment gi|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens]. 127 2e-29
Alignment gi|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapie... 119 5e-27
Alignment gi|NP_001325.1| cathepsin O preproprotein [Homo sapiens]. 107 3e-23
>ref|NP_003784.2| cathepsin F precursor [Homo sapiens].
Length = 484
Score = 587 bits (1513), Expect = e-168
Identities = 291/390 (74%), Positives = 317/390 (81%), Gaps = 24/390 (6%)
Frame = +2
Query: 239 SPELLAPARFALEMYNXXXXXXXXXXXXXXXXXXXXXXXXSLYSLKATLVEPPCNDPTVC 418
SPELLAP RFALEM+N SLYSL+ATL EPPCNDP VC
Sbjct: 36 SPELLAPTRFALEMFNRGRAAGTRAVLGLVRGRVRRAGQGSLYSLEATLEEPPCNDPMVC 95
Query: 419 QLPISKKTLLCSFEVLDELGKHMLLRRDCGPVDTKVT----------------------- 529
+LP+SKKTLLCSF+VLDELG+H+LLR+DCGPVDTKV
Sbjct: 96 RLPVSKKTLLCSFQVLDELGRHVLLRKDCGPVDTKVPGAGEPKSAFTQGSAMISSLSQNH 155
Query: 530 -DDTNETFSSFLPLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNM 706
D+ NETFSS + LLN+DPL QD VKMASIFK FV TYNRTY++KEEARWR+SVF NNM
Sbjct: 156 PDNRNETFSSVISLLNEDPLSQDLPVKMASIFKNFVITYNRTYESKEEARWRLSVFVNNM 215
Query: 707 VRAQKIQALDTGTARYGVTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEW 886
VRAQKIQALD GTA+YGVTKFSDLTEEEFRTIYLN LL++EPG KM+ AKSV L PPEW
Sbjct: 216 VRAQKIQALDRGTAQYGVTKFSDLTEEEFRTIYLNTLLRKEPGNKMKQAKSVGDLAPPEW 275
Query: 887 DWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMG 1066
DWR KGAVTKVKDQGMCGSCWAFSVTGNVEGQWFL QGTLLSLSEQELLDCDK+DK CMG
Sbjct: 276 DWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMG 335
Query: 1067 GLPSNAYSAIKTLGGLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLA 1246
GLPSNAYSAIK LGGLETEDDYSY+GH+Q+C+F+AEKAKVYINDSVELSQNEQKLAAWLA
Sbjct: 336 GLPSNAYSAIKNLGGLETEDDYSYQGHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLA 395
Query: 1247 EKGPISVAINAFGMQFYRHGISHPLRPLCS 1336
++GPISVAINAFGMQFYRHGIS PLRPLCS
Sbjct: 396 KRGPISVAINAFGMQFYRHGISRPLRPLCS 425
>ref|NP_001326.2| cathepsin W preproprotein [Homo sapiens].
Length = 376
Score = 169 bits (427), Expect = 7e-42
Identities = 98/255 (38%), Positives = 142/255 (55%), Gaps = 6/255 (2%)
Frame = +2
Query: 563 PLLNKDPLPQDFSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTG 742
PL +D PQ +K A FK F +NR+Y + EE R+ +FA+N+ +AQ++Q D G
Sbjct: 25 PLRAQDLGPQPLELKEA--FKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLG 82
Query: 743 TARYGVTKFSDLTEEEFRTIYLNPLLQ---EEPGRKMRLAKSVSSLPPPEWDWRK-KGAV 910
TA +GVT FSDLTEEEF +Y GR++R + S+P DWRK GA+
Sbjct: 83 TAEFGVTPFSDLTEEEFGQLYGYRRAAGGVPSMGREIRSEEPEESVPF-SCDWRKVAGAI 141
Query: 911 TKVKDQGMCGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYS 1090
+ +KDQ C CWA + GN+E W + + +S QELLDC + GC GG +A+
Sbjct: 142 SPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDCGRCGDGCHGGFVWDAFI 201
Query: 1091 AIKTLGGLETEDDYSYRGHLQT--CSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPIS 1264
+ GL +E DY ++G ++ C + +I D + L NE ++A +LA GPI+
Sbjct: 202 TVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPIT 261
Query: 1265 VAINAFGMQFYRHGI 1309
V IN +Q YR G+
Sbjct: 262 VTINMKPLQLYRKGV 276
>ref|NP_666023.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 148 bits (374), Expect = 1e-35
Identities = 94/258 (36%), Positives = 137/258 (53%), Gaps = 11/258 (4%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYG------ 757
F + + + ++ +NR Y EE WR +V+ NM K+ L R G
Sbjct: 21 FDHSLEAQWTKWKAMHNRLYGMNEEG-WRRAVWEKNM----KMIELHNQEYREGKHSFTM 75
Query: 758 -VTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGM 934
+ F D+T EEFR + +N +P + + + P DWR+KG VT VK+QG
Sbjct: 76 AMNAFGDMTSEEFRQV-MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQ 134
Query: 935 CGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLG 1108
CGSCWAFS TG +EGQ F K G L+SLSEQ L+DC + ++GC GGL A+ ++ G
Sbjct: 135 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 194
Query: 1109 GLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--F 1282
GL++E+ Y Y ++C +N + + V++ + E+ L +A GPISVAI+A
Sbjct: 195 GLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHE 254
Query: 1283 GMQFYRHGISHPLRPLCS 1336
FY+ GI P CS
Sbjct: 255 SFLFYKEGIY--FEPDCS 270
>ref|NP_001903.1| cathepsin L1 preproprotein [Homo sapiens].
Length = 333
Score = 148 bits (374), Expect = 1e-35
Identities = 94/258 (36%), Positives = 137/258 (53%), Gaps = 11/258 (4%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYG------ 757
F + + + ++ +NR Y EE WR +V+ NM K+ L R G
Sbjct: 21 FDHSLEAQWTKWKAMHNRLYGMNEEG-WRRAVWEKNM----KMIELHNQEYREGKHSFTM 75
Query: 758 -VTKFSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGM 934
+ F D+T EEFR + +N +P + + + P DWR+KG VT VK+QG
Sbjct: 76 AMNAFGDMTSEEFRQV-MNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQ 134
Query: 935 CGSCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCD--KVDKGCMGGLPSNAYSAIKTLG 1108
CGSCWAFS TG +EGQ F K G L+SLSEQ L+DC + ++GC GGL A+ ++ G
Sbjct: 135 CGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 194
Query: 1109 GLETEDDYSYRGHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINA--F 1282
GL++E+ Y Y ++C +N + + V++ + E+ L +A GPISVAI+A
Sbjct: 195 GLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHE 254
Query: 1283 GMQFYRHGISHPLRPLCS 1336
FY+ GI P CS
Sbjct: 255 SFLFYKEGIY--FEPDCS 270
>ref|NP_001188504.1| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 139 bits (350), Expect = 6e-33
Identities = 95/259 (36%), Positives = 138/259 (53%), Gaps = 12/259 (4%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTK--- 766
F + + + ++ T+ R Y EE WR +V+ NM + ++ + ++G T
Sbjct: 21 FDQNLDTKWYQWKATHRRLYGANEEG-WRRAVWEKNM-KMIELHNGEYSQGKHGFTMAMN 78
Query: 767 -FSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLP-PPEWDWRKKGAVTKVKDQGMCG 940
F D+T EEFR + + + RK ++ + L P DWRKKG VT VK+Q CG
Sbjct: 79 AFGDMTNEEFRQMM--GCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCG 136
Query: 941 SCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGL 1114
SCWAFS TG +EGQ F K G L+SLSEQ L+DC + ++GC GG + A+ +K GGL
Sbjct: 137 SCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGL 196
Query: 1115 ETEDDYSYRGHLQTCSFNAEKAKVYIND---SVELSQNEQKLAAWLAEKGPISVAINA-- 1279
++E+ Y Y + C + E + ND +V E+ L +A GPISVA++A
Sbjct: 197 DSEESYPYVAVDEICKYRPENS--VANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGH 254
Query: 1280 FGMQFYRHGISHPLRPLCS 1336
QFY+ GI P CS
Sbjct: 255 SSFQFYKSGIY--FEPDCS 271
>ref|NP_001324.2| cathepsin L2 preproprotein [Homo sapiens].
Length = 334
Score = 139 bits (350), Expect = 6e-33
Identities = 95/259 (36%), Positives = 138/259 (53%), Gaps = 12/259 (4%)
Frame = +2
Query: 596 FSVKMASIFKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTK--- 766
F + + + ++ T+ R Y EE WR +V+ NM + ++ + ++G T
Sbjct: 21 FDQNLDTKWYQWKATHRRLYGANEEG-WRRAVWEKNM-KMIELHNGEYSQGKHGFTMAMN 78
Query: 767 -FSDLTEEEFRTIYLNPLLQEEPGRKMRLAKSVSSLP-PPEWDWRKKGAVTKVKDQGMCG 940
F D+T EEFR + + + RK ++ + L P DWRKKG VT VK+Q CG
Sbjct: 79 AFGDMTNEEFRQMM--GCFRNQKFRKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCG 136
Query: 941 SCWAFSVTGNVEGQWFLKQGTLLSLSEQELLDCDKV--DKGCMGGLPSNAYSAIKTLGGL 1114
SCWAFS TG +EGQ F K G L+SLSEQ L+DC + ++GC GG + A+ +K GGL
Sbjct: 137 SCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGL 196
Query: 1115 ETEDDYSYRGHLQTCSFNAEKAKVYIND---SVELSQNEQKLAAWLAEKGPISVAINA-- 1279
++E+ Y Y + C + E + ND +V E+ L +A GPISVA++A
Sbjct: 197 DSEESYPYVAVDEICKYRPENS--VANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGH 254
Query: 1280 FGMQFYRHGISHPLRPLCS 1336
QFY+ GI P CS
Sbjct: 255 SSFQFYKSGIY--FEPDCS 271
>ref|NP_000387.1| cathepsin K preproprotein [Homo sapiens].
Length = 329
Score = 128 bits (321), Expect = 1e-29
Identities = 85/240 (35%), Positives = 126/240 (52%), Gaps = 16/240 (6%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNM--VRAQKIQA-LDTGTARYGVTKFSDLTEEEFRTIYL 808
T+ + Y+ K + R ++ N+ + ++A L T + D+T EE
Sbjct: 32 THRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEE------ 85
Query: 809 NPLLQEEPGRKMRLAKSVSS--LPPPEW--------DWRKKGAVTKVKDQGMCGSCWAFS 958
++Q+ G K+ L+ S S+ L PEW D+RKKG VT VK+QG CGSCWAFS
Sbjct: 86 --VVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFS 143
Query: 959 VTGNVEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSY 1138
G +EGQ K G LL+LS Q L+DC + GC GG +NA+ ++ G+++ED Y Y
Sbjct: 144 SVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPY 203
Query: 1139 RGHLQTCSFNAEKAKVYINDSVELSQ-NEQKLAAWLAEKGPISVAINA--FGMQFYRHGI 1309
G ++C +N E+ + NE+ L +A GP+SVAI+A QFY G+
Sbjct: 204 VGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 263
>ref|NP_004381.2| pro-cathepsin H preproprotein [Homo sapiens].
Length = 335
Score = 127 bits (319), Expect = 2e-29
Identities = 86/237 (36%), Positives = 123/237 (51%), Gaps = 7/237 (2%)
Frame = +2
Query: 620 FKEFVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTG--TARYGVTKFSDLTEEEF 793
FK +++ + +TY T EE R+ FA+N +KI A + G T + + +FSD++ E
Sbjct: 35 FKSWMSKHRKTYST-EEYHHRLQTFASNW---RKINAHNNGNHTFKMALNQFSDMSFAEI 90
Query: 794 RTIYLNPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGA-VTKVKDQGMCGSCWAFSVTGN 970
+ YL Q K + PP DWRKKG V+ VK+QG CGSCW FS TG
Sbjct: 91 KHKYLWSEPQNCSATKSNYLRGTGPYPPSV-DWRKKGNFVSPVKNQGACGSCWTFSTTGA 149
Query: 971 VEGQWFLKQGTLLSLSEQELLDC--DKVDKGCMGGLPSNAYSAIKTLGGLETEDDYSYRG 1144
+E + G +LSL+EQ+L+DC D + GC GGLPS A+ I G+ ED Y Y+G
Sbjct: 150 LESAIAIATGKMLSLAEQQLVDCAQDFNNHGCQGGLPSQAFEYILYNKGIMGEDTYPYQG 209
Query: 1145 HLQTCSFNAEKAKVYINDSVELS-QNEQKLAAWLAEKGPISVAINAF-GMQFYRHGI 1309
C F KA ++ D ++ +E+ + +A P+S A YR GI
Sbjct: 210 KDGYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGI 266
>ref|NP_004070.3| cathepsin S isoform 1 preproprotein [Homo sapiens].
Length = 331
Score = 119 bits (299), Expect = 5e-27
Identities = 76/242 (31%), Positives = 122/242 (50%), Gaps = 9/242 (3%)
Frame = +2
Query: 638 TYNRTYDTKEEARWRMSVFANNM--VRAQKIQ-ALDTGTARYGVTKFSDLTEEEFRTIYL 808
TY + Y K E R ++ N+ V ++ ++ + G+ D+T EE ++
Sbjct: 34 TYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMS 93
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPPEWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQWF 988
+ + + R + + + + P DWR+KG VT+VK QG CG+CWAFS G +E Q
Sbjct: 94 SLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLK 153
Query: 989 LKQGTLLSLSEQELLDCDKV---DKGCMGGLPSNAYSAIKTLGGLETEDDYSYRGHLQTC 1159
LK G L+SLS Q L+DC +KGC GG + A+ I G++++ Y Y+ Q C
Sbjct: 154 LKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKC 213
Query: 1160 SFNAEKAKVYINDSVELSQ-NEQKLAAWLAEKGPISVAINAFGMQF--YRHGISHPLRPL 1330
++++ + EL E L +A KGP+SV ++A F YR G+ + P
Sbjct: 214 QYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY--EPS 271
Query: 1331 CS 1336
C+
Sbjct: 272 CT 273
>ref|NP_001325.1| cathepsin O preproprotein [Homo sapiens].
Length = 321
Score = 107 bits (266), Expect = 3e-23
Identities = 75/234 (32%), Positives = 118/234 (50%), Gaps = 7/234 (2%)
Frame = +2
Query: 629 FVTTYNRTYDTKEEARWRMSVFANNMVRAQKIQALDTGTARYGVTKFSDLTEEEFRTIYL 808
F T+ R+ + +E A +R S+ + + + + + TA YG+ +FS L EEF+ IYL
Sbjct: 29 FTPTWPRSRE-REAAAFRESLNRHRYLNS--LFPSENSTAFYGINQFSYLFPEEFKAIYL 85
Query: 809 NPLLQEEPGRKMRLAKSVSSLPPP-EWDWRKKGAVTKVKDQGMCGSCWAFSVTGNVEGQW 985
+ P + S+ ++ P +DWR K VT+V++Q MCG CWAFSV G VE +
Sbjct: 86 RSKPSKFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAY 145
Query: 986 FLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAI-KTLGGLETEDDYSYRGHLQTC- 1159
+K L LS Q+++DC + GC GG NA + + K L + +Y ++ C
Sbjct: 146 AIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALNWLNKMQVKLVKDSEYPFKAQNGLCH 205
Query: 1160 ----SFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGI 1309
S + K Y + + S E ++A L GP+ V ++A Q Y GI
Sbjct: 206 YFSGSHSGFSIKGY--SAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGI 257
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 46,311,762
Number of extensions: 1272903
Number of successful extensions: 7231
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 7153
Number of HSP's successfully gapped: 12
Length of query: 445
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 339
Effective length of database: 14,802,980
Effective search space: 5018210220
Effective search space used: 5018210220
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008677
(1337 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 688 0.0
>Sscrofa_Chr02
|| Length = 162569375
Score = 688 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Minus
Query: 1 ttggccggcgccccgcggtctctggagctgggggtgggggacgagggccctccggctgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844997 ttggccggcgccccgcggtctctggagctgggggtgggggacgagggccctccggctgcg 4844938
Query: 61 ggcagctccgcccggtcggttggtccgcgcgtttctctgtgcgtgagtccgggccgccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844937 ggcagctccgcccggtcggttggtccgcgcgtttctctgtgcgtgagtccgggccgccgg 4844878
Query: 121 tttcgccctcgccatggccccctggctgcagctgctgttgctgctggggctgctcccgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844877 tttcgccctcgccatggccccctggctgcagctgctgttgctgctggggctgctcccgga 4844818
Query: 181 cgccgctcccgcccccaagaagccccgagcggccggcccgcaggccagggagctggcgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844817 cgccgctcccgcccccaagaagccccgagcggccggcccgcaggccagggagctggcgtc 4844758
Query: 241 cccggagctcctggcgcccgcccgcttcgccctggagatgtacaaccgcggccgggctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844757 cccggagctcctggcgcccgcccgcttcgccctggagatgtacaaccgcggccgggctgc 4844698
Query: 301 cgggacgagggccgcgttgagggccgtgcgcggacgcgtccgccggg 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844697 cgggacgagggccgcgttgagggccgtgcgcggacgcgtccgccggg 4844651
Score = 688 bits (347), Expect = 0.0
Identities = 347/347 (100%)
Strand = Plus / Plus
Query: 1 ttggccggcgccccgcggtctctggagctgggggtgggggacgagggccctccggctgcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4930949 ttggccggcgccccgcggtctctggagctgggggtgggggacgagggccctccggctgcg 4931008
Query: 61 ggcagctccgcccggtcggttggtccgcgcgtttctctgtgcgtgagtccgggccgccgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931009 ggcagctccgcccggtcggttggtccgcgcgtttctctgtgcgtgagtccgggccgccgg 4931068
Query: 121 tttcgccctcgccatggccccctggctgcagctgctgttgctgctggggctgctcccgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931069 tttcgccctcgccatggccccctggctgcagctgctgttgctgctggggctgctcccgga 4931128
Query: 181 cgccgctcccgcccccaagaagccccgagcggccggcccgcaggccagggagctggcgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931129 cgccgctcccgcccccaagaagccccgagcggccggcccgcaggccagggagctggcgtc 4931188
Query: 241 cccggagctcctggcgcccgcccgcttcgccctggagatgtacaaccgcggccgggctgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931189 cccggagctcctggcgcccgcccgcttcgccctggagatgtacaaccgcggccgggctgc 4931248
Query: 301 cgggacgagggccgcgttgagggccgtgcgcggacgcgtccgccggg 347
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931249 cgggacgagggccgcgttgagggccgtgcgcggacgcgtccgccggg 4931295
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Minus
Query: 780 cagaggaggagttccgcaccatctacctgaaccccctcctgcaagaggagcccggccgga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842817 cagaggaggagttccgcaccatctacctgaaccccctcctgcaagaggagcccggccgga 4842758
Query: 840 agatgcgcctcgccaagtccgtctccagccttcctccccccgagtgggactggaggaaaa 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842757 agatgcgcctcgccaagtccgtctccagccttcctccccccgagtgggactggaggaaaa 4842698
Query: 900 agggggctgtcaccaaagtcaaggaccagg 929
||||||||||||||||||||||||||||||
Sbjct: 4842697 agggggctgtcaccaaagtcaaggaccagg 4842668
Score = 297 bits (150), Expect = 8e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 780 cagaggaggagttccgcaccatctacctgaaccccctcctgcaagaggagcccggccgga 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933129 cagaggaggagttccgcaccatctacctgaaccccctcctgcaagaggagcccggccgga 4933188
Query: 840 agatgcgcctcgccaagtccgtctccagccttcctccccccgagtgggactggaggaaaa 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933189 agatgcgcctcgccaagtccgtctccagccttcctccccccgagtgggactggaggaaaa 4933248
Query: 900 agggggctgtcaccaaagtcaaggaccagg 929
||||||||||||||||||||||||||||||
Sbjct: 4933249 agggggctgtcaccaaagtcaaggaccagg 4933278
Score = 232 bits (117), Expect = 4e-58
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 1106 ggagggctggagacggaggacgactacagctaccggggccacctgcagacctgcagcttc 1165
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4841275 ggagggctggagacggaggaggactacagctaccggggccacctgcagacctgcagcttc 4841216
Query: 1166 aacgcagagaaggccaaggtctacatcaacgactcggtggagctgagccagaatgagcag 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4841215 aacgcagagaaggccaaggtctacatcaacgactcggtggagctgagccagaatgagcag 4841156
Query: 1226 a 1226
|
Sbjct: 4841155 a 4841155
Score = 232 bits (117), Expect = 4e-58
Identities = 120/121 (99%)
Strand = Plus / Plus
Query: 1106 ggagggctggagacggaggacgactacagctaccggggccacctgcagacctgcagcttc 1165
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4934681 ggagggctggagacggaggaggactacagctaccggggccacctgcagacctgcagcttc 4934740
Query: 1166 aacgcagagaaggccaaggtctacatcaacgactcggtggagctgagccagaatgagcag 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4934741 aacgcagagaaggccaaggtctacatcaacgactcggtggagctgagccagaatgagcag 4934800
Query: 1226 a 1226
|
Sbjct: 4934801 a 4934801
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Minus
Query: 668 gaagccaggtggcgcatgtccgtcttcgccaacaacatggtgcgagcgcagaagatccag 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843048 gaagccaggtggcgcatgtccgtcttcgccaacaacatggtgcgagcgcagaagatccag 4842989
Query: 728 gccctggacactggcacagctcggtacggggtcaccaagttcagtgaccttacag 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842988 gccctggacactggcacagctcggtacggggtcaccaagttcagtgaccttacag 4842934
Score = 228 bits (115), Expect = 6e-57
Identities = 115/115 (100%)
Strand = Plus / Plus
Query: 668 gaagccaggtggcgcatgtccgtcttcgccaacaacatggtgcgagcgcagaagatccag 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932898 gaagccaggtggcgcatgtccgtcttcgccaacaacatggtgcgagcgcagaagatccag 4932957
Query: 728 gccctggacactggcacagctcggtacggggtcaccaagttcagtgaccttacag 782
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932958 gccctggacactggcacagctcggtacggggtcaccaagttcagtgaccttacag 4933012
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 926 cagggcatgtgcggctcctgctgggccttttccgtcacgggcaacgtggagggccagtgg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842597 cagggcatgtgcggctcctgctgggccttttccgtcacgggcaacgtggagggccagtgg 4842538
Query: 986 ttcctgaagcaggggacgctgctctcgctctcggagcagg 1025
||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842537 ttcctgaagcaggggacgctgctctcgctctcggagcagg 4842498
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Minus
Query: 346 ggcgggccgggggtcgctgtactccctgaaggccactctggtggagcctccctgcaacga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844412 ggcgggccgggggtcgctgtactccctgaaggccactctggtggagcctccctgcaacga 4844353
Query: 406 ccctacggtgtgccagctccctatatccaagaaaaccctg 445
||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844352 ccctacggtgtgccagctccctatatccaagaaaaccctg 4844313
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 346 ggcgggccgggggtcgctgtactccctgaaggccactctggtggagcctccctgcaacga 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931534 ggcgggccgggggtcgctgtactccctgaaggccactctggtggagcctccctgcaacga 4931593
Query: 406 ccctacggtgtgccagctccctatatccaagaaaaccctg 445
||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931594 ccctacggtgtgccagctccctatatccaagaaaaccctg 4931633
Score = 198 bits (100), Expect = 6e-48
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 926 cagggcatgtgcggctcctgctgggccttttccgtcacgggcaacgtggagggccagtgg 985
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933349 cagggcatgtgcggctcctgctgggccttttccgtcacgggcaacgtggagggccagtgg 4933408
Query: 986 ttcctgaagcaggggacgctgctctcgctctcggagcagg 1025
||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933409 ttcctgaagcaggggacgctgctctcgctctcggagcagg 4933448
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 445 gctctgcagctttgaagtcctggacgagctgggaaaacacatgctgctgaggcgggactg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4844017 gctctgcagctttgaagtcctggacgagctgggaaaacacatgctgctgaggcgggactg 4843958
Query: 505 tggcccagtggataccaaggttacag 530
||||||||||||||||||||||||||
Sbjct: 4843957 tggcccagtggataccaaggttacag 4843932
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 445 gctctgcagctttgaagtcctggacgagctgggaaaacacatgctgctgaggcgggactg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4931929 gctctgcagctttgaagtcctggacgagctgggaaaacacatgctgctgaggcgggactg 4931988
Query: 505 tggcccagtggataccaaggttacag 530
||||||||||||||||||||||||||
Sbjct: 4931989 tggcccagtggataccaaggttacag 4932014
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Minus
Query: 1025 gagctcctggactgcgacaaggtggacaagggctgcatgggcggcttgccctccaacgcc 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4842422 gagctcctggactgcgacaaggtggacaagggctgcatgggcggcttgccctccaacgcc 4842363
Query: 1085 tactcagccataaagactctggg 1107
|||||||||||||||||||||||
Sbjct: 4842362 tactcagccataaagactctggg 4842340
Score = 165 bits (83), Expect = 8e-38
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1025 gagctcctggactgcgacaaggtggacaagggctgcatgggcggcttgccctccaacgcc 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4933524 gagctcctggactgcgacaaggtggacaagggctgcatgggcggcttgccctccaacgcc 4933583
Query: 1085 tactcagccataaagactctggg 1107
|||||||||||||||||||||||
Sbjct: 4933584 tactcagccataaagactctggg 4933606
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 589 ccaggacttttctgtgaagatggcttcgatcttcaaggaatttgtcaccacctataatcg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843691 ccaggacttttctgtgaagatggcttcgatcttcaaggaatttgtcaccacctataatcg 4843632
Query: 649 gacgtatgatacaaaggagg 668
||||||||||||||||||||
Sbjct: 4843631 gacgtatgatacaaaggagg 4843612
Score = 159 bits (80), Expect = 5e-36
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 589 ccaggacttttctgtgaagatggcttcgatcttcaaggaatttgtcaccacctataatcg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932255 ccaggacttttctgtgaagatggcttcgatcttcaaggaatttgtcaccacctataatcg 4932314
Query: 649 gacgtatgatacaaaggagg 668
||||||||||||||||||||
Sbjct: 4932315 gacgtatgatacaaaggagg 4932334
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 528 cagatgacacaaacgagactttcagttcattcctcccactgttgaacaaggatcccctgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4843844 cagatgacacaaacgagactttcagttcattcctcccactgttgaacaaggatcccctgc 4843785
Query: 588 cccagg 593
||||||
Sbjct: 4843784 cccagg 4843779
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 528 cagatgacacaaacgagactttcagttcattcctcccactgttgaacaaggatcccctgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4932102 cagatgacacaaacgagactttcagttcattcctcccactgttgaacaaggatcccctgc 4932161
Query: 588 cccagg 593
||||||
Sbjct: 4932162 cccagg 4932167
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Minus
Query: 1227 agctggcagcctggctggccgagaagggccccatctccgttgccatcaacgcctttggca 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4841075 agctggcagcctggctggccgagaagggccccatctccgttgccatcaacgcctttggca 4841016
Query: 1287 tgcag 1291
|||||
Sbjct: 4841015 tgcag 4841011
Score = 129 bits (65), Expect = 4e-27
Identities = 65/65 (100%)
Strand = Plus / Plus
Query: 1227 agctggcagcctggctggccgagaagggccccatctccgttgccatcaacgcctttggca 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4934881 agctggcagcctggctggccgagaagggccccatctccgttgccatcaacgcctttggca 4934940
Query: 1287 tgcag 1291
|||||
Sbjct: 4934941 tgcag 4934945
Score = 89.7 bits (45), Expect = 4e-15
Identities = 48/49 (97%)
Strand = Plus / Minus
Query: 1289 cagttctaccgccacgggatctcccaccccctgaggcccctctgcagcc 1337
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4840931 cagttctaccgccacgggatctcccaccccctgcggcccctctgcagcc 4840883
Score = 89.7 bits (45), Expect = 4e-15
Identities = 48/49 (97%)
Strand = Plus / Plus
Query: 1289 cagttctaccgccacgggatctcccaccccctgaggcccctctgcagcc 1337
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4935025 cagttctaccgccacgggatctcccaccccctgcggcccctctgcagcc 4935073
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,174,831
Number of extensions: 365
Number of successful extensions: 365
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 24
Length of query: 1337
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1316
Effective length of database: 2,808,413,156
Effective search space: 3695871713296
Effective search space used: 3695871713296
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)