Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_612494.4| PREDICTED: kismet-like [Bos taurus]. 758 0.0
Alignment gi|XP_002692716.1| PREDICTED: kismet-like [Bos taurus]. 755 0.0
Alignment gi|NP_001192677.1| atrophin-1 [Bos taurus]. 56 9e-08
Alignment gi|XP_002687908.1| PREDICTED: atrophin 1 [Bos taurus]. 56 9e-08
Alignment gi|NP_001193007.1| WD repeat-containing protein 33 [Bos taurus]. 52 2e-06
Alignment gi|XP_002690406.1| PREDICTED: AT rich interactive domain 1B (SW... 52 2e-06
Alignment gi|XP_002685257.1| PREDICTED: WD repeat domain 33 [Bos taurus]. 52 2e-06
Alignment gi|XP_002705293.1| PREDICTED: AT rich interactive domain 1B (SW... 52 2e-06
Alignment gi|XP_002696517.1| PREDICTED: MAGE-like 2 [Bos taurus]. 50 5e-06
Alignment gi|XP_581873.3| PREDICTED: MAGE-like 2 [Bos taurus]. 50 5e-06
>ref|XP_612494.4| PREDICTED: kismet-like [Bos taurus].
Length = 2940
Score = 758 bits (1957), Expect = 0.0
Identities = 388/581 (66%), Positives = 415/581 (71%), Gaps = 8/581 (1%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHYNQYE QKMHLMDQPNRM+SNAPGNGLASPHSQYHTPPVPQVPHGGG G
Sbjct: 65 KLTHFDHYNQYEPQKMHLMDQPNRMLSNAPGNGLASPHSQYHTPPVPQVPHGGGGGEGXX 124
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
P GP P ++
Sbjct: 125 PQPAPS---------------GPPGQGHPPHLQQLGG----------------------- 146
Query: 362 XXXXXXYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 541
YLARGDFSM QHGQPQPRM QFP GQEGLSQGNPFI GPGHLSH P QSPGV
Sbjct: 147 ------YLARGDFSMPQHGQPQPRMGQFPPGQEGLSQGNPFIAGPGPGHLSHGPPQSPGV 200
Query: 542 APS-RHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLN 718
APS RH VQPFHHHPPTALHG+SVAHSPRFSPNP QGAVRPQTL FSSRSQT PSPT+N
Sbjct: 201 APSLRHAVQPFHHHPPTALHGDSVAHSPRFSPNPAPQGAVRPQTLTFSSRSQTVPSPTIN 260
Query: 719 NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQ 898
NSGQYSRYPYSNLNQGLVN+TGMNQNLGLTN+ P+NQSVPRYP+AVGFP S GL+HQQ
Sbjct: 261 NSGQYSRYPYSNLNQGLVNSTGMNQNLGLTNSAPLNQSVPRYPSAVGFPPGSAPGLLHQQ 320
Query: 899 PVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAL-SNPAGTPPPQVRPGSAGIPMDV 1075
PVHPSGSLNQMN QTMHPSQPQG+YASPPPMSP+KA+ S+ AGTPPPQVRPGSA PMDV
Sbjct: 321 PVHPSGSLNQMNAQTMHPSQPQGSYASPPPMSPLKAMSSSAAGTPPPQVRPGSA--PMDV 378
Query: 1076 GSYPTVPHPPP------GALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGV 1237
G YP++PHP P GALG+G RS+GPR++ +RPF+GMS AP HLRPNGCPGV
Sbjct: 379 GGYPSMPHPQPAHQPPGGALGLGPRSLGPRSLPPARPFLGMSPAP-----HLRPNGCPGV 433
Query: 1238 GLADPQALQERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 1417
LADPQA+Q+R P+C S
Sbjct: 434 TLADPQAVQDRLLPGQQHPGPQPAFQQLPSCPPLQPHPGLHHQSSPPHPHHQPWAQLHPS 493
Query: 1418 PQNTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXN 1597
PQ+TPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIE N
Sbjct: 494 PQSTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKN 553
Query: 1598 NHIVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
NHIVAEDPSK+FGKDD PGGVD QELNRNSLDGSQEEKKKK
Sbjct: 554 NHIVAEDPSKNFGKDDFPGGVDNQELNRNSLDGSQEEKKKK 594
>ref|XP_002692716.1| PREDICTED: kismet-like [Bos taurus].
Length = 2935
Score = 755 bits (1949), Expect = 0.0
Identities = 387/581 (66%), Positives = 413/581 (71%), Gaps = 8/581 (1%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHYNQYE QKMHLMDQPNRM+SNAPGNGLASPHSQYHTPPVPQVPHGGG G
Sbjct: 65 KLTHFDHYNQYEPQKMHLMDQPNRMLSNAPGNGLASPHSQYHTPPVPQVPHGGG--GPQP 122
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
G + H G
Sbjct: 123 APSGPPGQGHPPHLQQLGG----------------------------------------- 141
Query: 362 XXXXXXYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 541
YLARGDFSM QHGQPQPRM QFP GQEGLSQGNPFI GPGHLSH P QSPGV
Sbjct: 142 ------YLARGDFSMPQHGQPQPRMGQFPPGQEGLSQGNPFIAGPGPGHLSHGPPQSPGV 195
Query: 542 APS-RHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLN 718
APS RH VQPFHHHPPTALHG+SVAHSPRFSPNP QGAVRPQTL FSSRSQT PSPT+N
Sbjct: 196 APSLRHAVQPFHHHPPTALHGDSVAHSPRFSPNPAPQGAVRPQTLTFSSRSQTVPSPTIN 255
Query: 719 NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQ 898
NSGQYSRYPYSNLNQGLVN+TGMNQNLGLTN+ P+NQSVPRYP+AVGFP S GL+HQQ
Sbjct: 256 NSGQYSRYPYSNLNQGLVNSTGMNQNLGLTNSAPLNQSVPRYPSAVGFPPGSAPGLLHQQ 315
Query: 899 PVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAL-SNPAGTPPPQVRPGSAGIPMDV 1075
PVHPSGSLNQMN QTMHPSQPQG+YASPPPMSP+KA+ S+ AGTPPPQVRPGSA PMDV
Sbjct: 316 PVHPSGSLNQMNAQTMHPSQPQGSYASPPPMSPLKAMSSSAAGTPPPQVRPGSA--PMDV 373
Query: 1076 GSYPTVPHPPP------GALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGV 1237
G YP++PHP P GALG+G RS+GPR++ +RPF+GMS AP HLRPNGCPGV
Sbjct: 374 GGYPSMPHPQPAHQPPGGALGLGPRSLGPRSLPPARPFLGMSPAP-----HLRPNGCPGV 428
Query: 1238 GLADPQALQERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXS 1417
LADPQA+Q+R P+C S
Sbjct: 429 TLADPQAVQDRLLPGQQHPGPQPAFQQLPSCPPLQPHPGLHHQSSPPHPHHQPWAQLHPS 488
Query: 1418 PQNTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXN 1597
PQ+TPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIE N
Sbjct: 489 PQSTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKN 548
Query: 1598 NHIVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
NHIVAEDPSK+FGKDD PGGVD QELNRNSLDGSQEEKKKK
Sbjct: 549 NHIVAEDPSKNFGKDDFPGGVDNQELNRNSLDGSQEEKKKK 589
>ref|NP_001192677.1| atrophin-1 [Bos taurus].
Length = 1184
Score = 56.2 bits (134), Expect = 9e-08
Identities = 65/263 (24%), Positives = 98/263 (37%), Gaps = 16/263 (6%)
Frame = +2
Query: 479 PFITTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTA-LHGESVAHSPRFSPNPPQQGA 655
P +T + P + P + +P QP H P+ G+S+ P P P +
Sbjct: 296 PHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQSMGGLP---PGPEKGPT 352
Query: 656 VRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLT-NNTPMNQS 832
+ P S +AP+PT+ RYPYS+ N + + + P +Q+
Sbjct: 353 LAPSPHPLPPASSSAPAPTM-------RYPYSSSTSSSAAAASSNSSASASASQYPASQA 405
Query: 833 VPRYPNAVGFPSNSGQGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALS 1012
+P YP++ FP + + +Q P + SL PSQ + PPP + L+
Sbjct: 406 LPSYPHS--FPPPTSLSVSNQPPKYTQPSL---------PSQAVWSQGPPPPPPYGRLLA 454
Query: 1013 NPAGTPPPQVRPGSAGIPMDVGSYPTVPH------------PPPGALGIGQRSVG--PRN 1150
N + P P P + G S PT H PPP G G G P
Sbjct: 455 NSSAHPGP-FPPSAGGQSTAHPSAPTHHHHHQQQQQQQQQPPPPHHGGSGPPPPGAYPHP 513
Query: 1151 MQQSRPFMGMSSAPRELAGHLRP 1219
++ A G LRP
Sbjct: 514 LESGGSHHAHPYAMSPSLGSLRP 536
>ref|XP_002687908.1| PREDICTED: atrophin 1 [Bos taurus].
Length = 1184
Score = 56.2 bits (134), Expect = 9e-08
Identities = 65/263 (24%), Positives = 98/263 (37%), Gaps = 16/263 (6%)
Frame = +2
Query: 479 PFITTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTA-LHGESVAHSPRFSPNPPQQGA 655
P +T + P + P + +P QP H P+ G+S+ P P P +
Sbjct: 296 PHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQSMGGLP---PGPEKGPT 352
Query: 656 VRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLT-NNTPMNQS 832
+ P S +AP+PT+ RYPYS+ N + + + P +Q+
Sbjct: 353 LAPSPHPLPPASSSAPAPTM-------RYPYSSSTSSSAAAASSNSSASASASQYPASQA 405
Query: 833 VPRYPNAVGFPSNSGQGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALS 1012
+P YP++ FP + + +Q P + SL PSQ + PPP + L+
Sbjct: 406 LPSYPHS--FPPPTSLSVSNQPPKYTQPSL---------PSQAVWSQGPPPPPPYGRLLA 454
Query: 1013 NPAGTPPPQVRPGSAGIPMDVGSYPTVPH------------PPPGALGIGQRSVG--PRN 1150
N + P P P + G S PT H PPP G G G P
Sbjct: 455 NSSAHPGP-FPPSAGGQSTAHPSAPTHHHHHQQQQQQQQQPPPPHHGGSGPPPPGAYPHP 513
Query: 1151 MQQSRPFMGMSSAPRELAGHLRP 1219
++ A G LRP
Sbjct: 514 LESGGSHHAHPYAMSPSLGSLRP 536
>ref|NP_001193007.1| WD repeat-containing protein 33 [Bos taurus].
Length = 1336
Score = 51.6 bits (122), Expect = 2e-06
Identities = 50/156 (32%), Positives = 58/156 (37%), Gaps = 30/156 (19%)
Frame = +2
Query: 875 GQGLMHQQPV-----HPSGSLNQMNTQTMHPSQPQGTYASPPP----------------- 988
GQG M Q P HPS L+ MN M P PQG + P P
Sbjct: 590 GQGPMSQIPQGFQQPHPSQQLS-MNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGG 648
Query: 989 ----MSPMKALSNPAGTPPPQVRPGSAGIPMDVGSY-PTVPHPPPGALGIG--QRSVGPR 1147
M P P G P PQ G GI G + P P PPG G Q +GP+
Sbjct: 649 PQGFMGPQGPQGPPQGLPRPQDMHGPQGIQRHPGPHGPLGPQGPPGPQGNAGPQGHMGPQ 708
Query: 1148 NMQQSRPFMGMSSAPRELAGHLRPNGCPGV-GLADP 1252
+ +G P GHL P G PG G+ P
Sbjct: 709 GPPGPQGHIGPQGPPGP-QGHLGPQGPPGTQGMQGP 743
>ref|XP_002690406.1| PREDICTED: AT rich interactive domain 1B (SWI1-like) [Bos taurus].
Length = 1808
Score = 51.6 bits (122), Expect = 2e-06
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 19/270 (7%)
Frame = +2
Query: 488 TTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTALHGESVAHSPRFSP-------NPPQ 646
+TS G S+ PAQSP P + H S+ P SP N +
Sbjct: 202 STSSQGDQSN-PAQSP-------------FSPHASPHLSSIPGGPSPSPVGSPVGSNQSR 247
Query: 647 QGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMN 826
G + P ++ SQ P P N S + S +P ++ + M Q G T N
Sbjct: 248 SGPISPASI---PGSQMPPQPPGNQS-ESSSHP-------ALSQSPMPQERGFMAGTQRN 296
Query: 827 QSVPRY------PNAVGFPSNSGQGLMHQQPVHPS-GSLNQMNTQTMHPSQ-----PQGT 970
+ +Y P+ PS GQ +HP S Q N+ + Q PQG
Sbjct: 297 PQMSQYGPQQTGPSMSPHPSPGGQ-------MHPGISSFQQSNSSGTYGPQMSQYGPQGN 349
Query: 971 YASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHPPPGALGIGQRSVGPRN 1150
Y+ PP S + + S P S G+ + + P P GA+ +G+ P
Sbjct: 350 YSRPPTYSGVPSASYSGPGP-------SMGVNANSQMHGQGPSQPCGAMPLGR---VPSA 399
Query: 1151 MQQSRPFMGMSSAPRELAGHLRPNGCPGVG 1240
Q+RPF G S+ + + G PG+G
Sbjct: 400 GMQNRPFPGNMSSMTPSSPGMSQQGGPGMG 429
>ref|XP_002685257.1| PREDICTED: WD repeat domain 33 [Bos taurus].
Length = 1336
Score = 51.6 bits (122), Expect = 2e-06
Identities = 50/156 (32%), Positives = 58/156 (37%), Gaps = 30/156 (19%)
Frame = +2
Query: 875 GQGLMHQQPV-----HPSGSLNQMNTQTMHPSQPQGTYASPPP----------------- 988
GQG M Q P HPS L+ MN M P PQG + P P
Sbjct: 590 GQGPMSQIPQGFQQPHPSQQLS-MNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGG 648
Query: 989 ----MSPMKALSNPAGTPPPQVRPGSAGIPMDVGSY-PTVPHPPPGALGIG--QRSVGPR 1147
M P P G P PQ G GI G + P P PPG G Q +GP+
Sbjct: 649 PQGFMGPQGPQGPPQGLPRPQDMHGPQGIQRHPGPHGPLGPQGPPGPQGNAGPQGHMGPQ 708
Query: 1148 NMQQSRPFMGMSSAPRELAGHLRPNGCPGV-GLADP 1252
+ +G P GHL P G PG G+ P
Sbjct: 709 GPPGPQGHIGPQGPPGP-QGHLGPQGPPGTQGMQGP 743
>ref|XP_002705293.1| PREDICTED: AT rich interactive domain 1B (SWI1-like) [Bos taurus].
Length = 1799
Score = 51.6 bits (122), Expect = 2e-06
Identities = 70/270 (25%), Positives = 103/270 (38%), Gaps = 19/270 (7%)
Frame = +2
Query: 488 TTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTALHGESVAHSPRFSP-------NPPQ 646
+TS G S+ PAQSP P + H S+ P SP N +
Sbjct: 202 STSSQGDQSN-PAQSP-------------FSPHASPHLSSIPGGPSPSPVGSPVGSNQSR 247
Query: 647 QGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMN 826
G + P ++ SQ P P N S + S +P ++ + M Q G T N
Sbjct: 248 SGPISPASI---PGSQMPPQPPGNQS-ESSSHP-------ALSQSPMPQERGFMAGTQRN 296
Query: 827 QSVPRY------PNAVGFPSNSGQGLMHQQPVHPS-GSLNQMNTQTMHPSQ-----PQGT 970
+ +Y P+ PS GQ +HP S Q N+ + Q PQG
Sbjct: 297 PQMSQYGPQQTGPSMSPHPSPGGQ-------MHPGISSFQQSNSSGTYGPQMSQYGPQGN 349
Query: 971 YASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHPPPGALGIGQRSVGPRN 1150
Y+ PP S + + S P S G+ + + P P GA+ +G+ P
Sbjct: 350 YSRPPTYSGVPSASYSGPGP-------SMGVNANSQMHGQGPSQPCGAMPLGR---VPSA 399
Query: 1151 MQQSRPFMGMSSAPRELAGHLRPNGCPGVG 1240
Q+RPF G S+ + + G PG+G
Sbjct: 400 GMQNRPFPGNMSSMTPSSPGMSQQGGPGMG 429
>ref|XP_002696517.1| PREDICTED: MAGE-like 2 [Bos taurus].
Length = 1183
Score = 50.4 bits (119), Expect = 5e-06
Identities = 68/245 (27%), Positives = 83/245 (33%), Gaps = 6/245 (2%)
Frame = +2
Query: 542 APSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNN 721
+P +P + PT L + P S PP P L S + AP P
Sbjct: 12 SPPEEAPKPAVYSRPTVL----MRAPPASSRAPPVPWDPPPIDLQASLAAWQAPQPAWEA 67
Query: 722 SGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 901
P + ++Q +LG PM Q+ P +G P G ++H P
Sbjct: 68 PQGQPPAPIAPMSQP--------PSLG----GPMVQAPP-LGGPMGKPPTPGVLMIHPPP 114
Query: 902 VHPSGSLNQMNTQ---TMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMD 1072
P L Q T MHPS P A PPP A P GT P P G PM
Sbjct: 115 --PGAPLAQPPTPGVLMMHPSAPGAPMAHPPPPGTPMAHPPPPGT--PMAHPPPPGTPMV 170
Query: 1073 VGSYPTVP--HPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNG-CPGVGL 1243
P P HPPP + P P G A G L P PGV +
Sbjct: 171 HPPPPGTPMTHPPPPGTPMAHPPPPPATPMAHPPPPGTPMAQPPAPGVLIPQPLTPGVLM 230
Query: 1244 ADPQA 1258
P A
Sbjct: 231 VQPPA 235
>ref|XP_581873.3| PREDICTED: MAGE-like 2 [Bos taurus].
Length = 1183
Score = 50.4 bits (119), Expect = 5e-06
Identities = 68/245 (27%), Positives = 83/245 (33%), Gaps = 6/245 (2%)
Frame = +2
Query: 542 APSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNN 721
+P +P + PT L + P S PP P L S + AP P
Sbjct: 12 SPPEEAPKPAVYSRPTVL----MRAPPASSRAPPVPWDPPPIDLQASLAAWQAPQPAWEA 67
Query: 722 SGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 901
P + ++Q +LG PM Q+ P +G P G ++H P
Sbjct: 68 PQGQPPAPIAPMSQP--------PSLG----GPMVQAPP-LGGPMGKPPTPGVLMIHPPP 114
Query: 902 VHPSGSLNQMNTQ---TMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMD 1072
P L Q T MHPS P A PPP A P GT P P G PM
Sbjct: 115 --PGAPLAQPPTPGVLMMHPSAPGAPMAHPPPPGTPMAHPPPPGT--PMAHPPPPGTPMV 170
Query: 1073 VGSYPTVP--HPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNG-CPGVGL 1243
P P HPPP + P P G A G L P PGV +
Sbjct: 171 HPPPPGTPMTHPPPPGTPMAHPPPPPATPMAHPPPPGTPMAQPPAPGVLIPQPLTPGVLM 230
Query: 1244 ADPQA 1258
P A
Sbjct: 231 VQPPA 235
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 61,486,950
Number of extensions: 1841414
Number of successful extensions: 11807
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 10763
Number of HSP's successfully gapped: 12
Length of query: 573
Length of database: 17,681,374
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,107,870
Effective search space: 6560159550
Effective search space used: 6560159550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_544097.2| PREDICTED: similar to chromodomain helicase DNA... 918 0.0
Alignment gi|XP_541885.2| PREDICTED: similar to bassoon [Canis familiaris]. 55 2e-07
Alignment gi|XP_541164.2| PREDICTED: similar to AT rich interactive domai... 52 2e-06
>ref|XP_544097.2| PREDICTED: similar to chromodomain helicase DNA binding protein 7
isoform 1 [Canis familiaris].
Length = 2995
Score = 918 bits (2373), Expect = 0.0
Identities = 448/579 (77%), Positives = 467/579 (80%), Gaps = 6/579 (1%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHYNQYEQQKMHLMDQPNRMMS+APGNGLASPHSQYH PPVPQVPHGG G QMG
Sbjct: 65 KLTHFDHYNQYEQQKMHLMDQPNRMMSSAPGNGLASPHSQYHGPPVPQVPHGGSGGSQMG 124
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
VYPGMQNERHGQSFVDSGS+WGPRAV VPDQIRA
Sbjct: 125 VYPGMQNERHGQSFVDSGSMWGPRAVQVPDQIRAPYQQQPQPQPPQPTPSGPPAQGHPQH 184
Query: 362 XXXXXXYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 541
Y+ARGDFSMQQHGQPQ RMSQF GQEGL+QG+PFI TSGPGHLSHVP QSP +
Sbjct: 185 MQQMGSYMARGDFSMQQHGQPQQRMSQFSPGQEGLNQGSPFIATSGPGHLSHVPQQSPSM 244
Query: 542 APS-RHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLN 718
APS RH+V FHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQT PSPT+N
Sbjct: 245 APSLRHSVPQFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVPSPTMN 304
Query: 719 NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQ 898
NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNN PM+QSVPRYPNAVGFPSNSGQGLMHQQ
Sbjct: 305 NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNPPMSQSVPRYPNAVGFPSNSGQGLMHQQ 364
Query: 899 PVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVG 1078
P+HPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKA+SNPAGTPPPQVRPGSAGIPM+VG
Sbjct: 365 PIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEVG 424
Query: 1079 SYPTVPHP-----PPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGL 1243
SYP +PHP PPGA+GIGQR++GPRNMQQSRPFMGMSSAPRELAGH+RPNGCPGVGL
Sbjct: 425 SYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFMGMSSAPRELAGHMRPNGCPGVGL 484
Query: 1244 ADPQALQERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQ 1423
ADPQA+QER PTC SPQ
Sbjct: 485 ADPQAIQERLLPGQQHPGQQPSFQQLPTCPPMQPHPGLHHQSSPPHPHHQPWAQLHPSPQ 544
Query: 1424 NTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXNNH 1603
NTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPS+E NNH
Sbjct: 545 NTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSVEQQPQQKKKKKKNNH 604
Query: 1604 IVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
IVAEDPSKSFGKDD PGGVD QELNRNSLDGSQEEKKKK
Sbjct: 605 IVAEDPSKSFGKDDFPGGVDNQELNRNSLDGSQEEKKKK 643
>ref|XP_541885.2| PREDICTED: similar to bassoon [Canis familiaris].
Length = 3921
Score = 55.1 bits (131), Expect = 2e-07
Identities = 64/275 (23%), Positives = 86/275 (31%), Gaps = 37/275 (13%)
Frame = +2
Query: 545 PSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRS-----QTAPSP 709
PSRHT H H HG+ HS R + + P + A +P T + Q +P+P
Sbjct: 3623 PSRHTSAKEHRH-----HGDHGRHSGRHAGDEPGRRAAKPHTRDLGRHEARPHPQPSPAP 3677
Query: 710 TLNNSGQY-----------SRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAV 856
+ GQ SR P + + + G T P +S P+
Sbjct: 3678 AMQKKGQPGYPSSAEYSQPSRAPSAYHHASDSKKGSRQAHSGPTTPQPKPESQPQPQGRQ 3737
Query: 857 GFPSNSGQGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPP 1036
P G QP P T P PQ + PA P
Sbjct: 3738 VAP-----GPQQSQP--PPSRQTPSATGLRQPQTPQQQQQQQQQQQQQGLGTQPAQQAPV 3790
Query: 1037 QVRPGSAGIPMDVGSYPTVPHP-----PPGALGIGQRSVGPRNMQQSRPFMGMSSAPRE- 1198
Q R G P G P P P G + VGP +Q+ G + AP++
Sbjct: 3791 QTRVQQQGQPAARGPAPAASQPAGKAQPGPTTATGPQPVGPPRAEQANGSKGTAKAPQQG 3850
Query: 1199 ---------------LAGHLRPNGCPGVGLADPQA 1258
+ RP G PG P A
Sbjct: 3851 RPPQAQPPPGPGPAGMKAGARPGGTPGAPAGQPGA 3885
>ref|XP_541164.2| PREDICTED: similar to AT rich interactive domain 1B (SWI1-like)
isoform 1 [Canis familiaris].
Length = 1918
Score = 51.6 bits (122), Expect = 2e-06
Identities = 73/268 (27%), Positives = 105/268 (39%), Gaps = 17/268 (6%)
Frame = +2
Query: 488 TTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTALHGESVAHSPRFSP-------NPPQ 646
+TS G S+ PAQSP P + H S+ P SP N +
Sbjct: 392 STSSQGDQSN-PAQSP-------------FSPHASPHLSSIPGGPSPSPVGSPVGSNQSR 437
Query: 647 QGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMN 826
G + P ++ SQ P P + S + S +P ++ + M Q G N M+
Sbjct: 438 SGPISPASI---PGSQMPPQPPGSQS-ESSSHP-------ALSQSPMPQERGTQRNPQMS 486
Query: 827 QSVPRY--PNAVGFPSNSGQGLMHQQPVHPS-GSLNQMNTQTMHPSQ-----PQGTYASP 982
Q P+ P+ PS GQ +HP S Q N+ + Q PQG Y+ P
Sbjct: 487 QYGPQQTGPSMSPHPSPGGQ-------MHPGISSFQQSNSSGTYGPQMSQYGPQGNYSRP 539
Query: 983 PPMS--PMKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHPPPGALGIGQRSVGPRNMQ 1156
P S P + S P PG GI + + P P GA+ +G+ P
Sbjct: 540 PTYSGVPSASYSGPG--------PGM-GINANNQMHGQGPSQPCGAMPLGRM---PSAGM 587
Query: 1157 QSRPFMGMSSAPRELAGHLRPNGCPGVG 1240
Q+RPF G S+ + + G PG+G
Sbjct: 588 QNRPFPGNMSSMTPSSPGMSQQGGPGMG 615
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 64,201,308
Number of extensions: 1917891
Number of successful extensions: 12505
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11558
Number of HSP's successfully gapped: 3
Length of query: 573
Length of database: 18,874,504
Length adjustment: 108
Effective length of query: 465
Effective length of database: 15,274,216
Effective search space: 7102510440
Effective search space used: 7102510440
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003355099.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain... 991 0.0
Alignment gi|XP_003126588.2| PREDICTED: atrophin-1-like [Sus scrofa]. 54 4e-07
Alignment gi|XP_003359611.1| PREDICTED: LOW QUALITY PROTEIN: WAS/WASL-int... 49 9e-06
Alignment gi|XP_003127918.1| PREDICTED: protein SSXT-like isoform 1 [Sus ... 49 9e-06
Alignment gi|XP_003356436.1| PREDICTED: protein SSXT-like [Sus scrofa]. 49 9e-06
>ref|XP_003355099.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 7 [Sus scrofa].
Length = 2983
Score = 991 bits (2563), Expect = 0.0
Identities = 485/573 (84%), Positives = 485/573 (84%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG
Sbjct: 65 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 124
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRA
Sbjct: 125 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAPYQPPPPPPQPQPAPSGPPGQGHPPH 184
Query: 362 XXXXXXYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 541
YLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV
Sbjct: 185 LQQMGGYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 244
Query: 542 APSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNN 721
APSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNN
Sbjct: 245 APSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNN 304
Query: 722 SGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 901
SGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP
Sbjct: 305 SGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQP 364
Query: 902 VHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGS 1081
VHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGS
Sbjct: 365 VHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGS 424
Query: 1082 YPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLADPQAL 1261
YPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLADPQAL
Sbjct: 425 YPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLADPQAL 484
Query: 1262 QERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQNTPQKV 1441
QER PTC SPQNTPQKV
Sbjct: 485 QERLLPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQPSPPHPHHQPWAQLHPSPQNTPQKV 544
Query: 1442 PVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXNNHIVAEDP 1621
PVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIE NNHIVAEDP
Sbjct: 545 PVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNNHIVAEDP 604
Query: 1622 SKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
SKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK
Sbjct: 605 SKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 637
>ref|XP_003126588.2| PREDICTED: atrophin-1-like [Sus scrofa].
Length = 1182
Score = 53.5 bits (127), Expect = 4e-07
Identities = 56/221 (25%), Positives = 86/221 (38%), Gaps = 1/221 (0%)
Frame = +2
Query: 533 PGVAPSRHTV-QPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSP 709
PG PS H++ Q PP G ++A SP P PP + S +AP+P
Sbjct: 327 PGHLPSPHSMGQGMGGLPPGPEKGPTLAPSPH--PLPP-------------ASSSSAPAP 371
Query: 710 TLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLM 889
+ RYPYS+ ++ + ++ + P +Q++P YP++ FP + +
Sbjct: 372 PM-------RYPYSSSGSSAAASSSSSASV---SQYPASQALPSYPHS--FPPPTSLSVS 419
Query: 890 HQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPM 1069
+Q P + SL PSQ + PPP + L+N P P P
Sbjct: 420 NQPPKYTQPSL---------PSQAVWSQGPPPPPPYGRLLANSNAHPGP--------FPP 462
Query: 1070 DVGSYPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAP 1192
G T P P Q+ + QQ + G S P
Sbjct: 463 SAGGQSTAHPPAPAHHHHHQQQQQQQQQQQQQQHHGSSGPP 503
>ref|XP_003359611.1| PREDICTED: LOW QUALITY PROTEIN: WAS/WASL-interacting protein family
member 1-like [Sus scrofa].
Length = 509
Score = 48.9 bits (115), Expect = 9e-06
Identities = 74/289 (25%), Positives = 99/289 (34%), Gaps = 15/289 (5%)
Frame = +2
Query: 410 QHGQPQPRMSQFPQGQEGLSQ------------GNPFITTSGPGHLSHVPAQSPGVAPSR 553
Q G P+ R + +G G S+ PF SGPG P SPG
Sbjct: 105 QAGMPKLRSTANREGDSGGSRPPILPPGGRSTSAKPFSPPSGPGRF---PVPSPGHRSGP 161
Query: 554 HTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSR-SQTAPSPTLNNSGQ 730
Q PP G + P PN P RP + +R S AP S
Sbjct: 162 PEPQRSRMPPPRPDVGAKPDNIPPPVPNTP-----RPVPSSLHNRGSPLAPGAPRQPSPG 216
Query: 731 YSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQPVHP 910
+ P+ N G G +P S P + N P + L + P P
Sbjct: 217 PTPPPFPG-------NRGAAFGGGSIRQSPSASSSP-FSNRPPLPPTPSRALDDKPPPPP 268
Query: 911 S--GSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGSY 1084
G+ ++ + + P PQ + P P +P + S+ A +PPP P AG P
Sbjct: 269 PPVGNRPSLHREAVPPPPPQNS-KPPVPXTPRPSASSQALSPPP---PSRAGPP------ 318
Query: 1085 PTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCP 1231
P PP G G PR Q++ SSA L R P
Sbjct: 319 ---PLPPGSGSGGGGSDEIPRLPQRNLSLSSSSSAAPPLPSPGRSGPLP 364
>ref|XP_003127918.1| PREDICTED: protein SSXT-like isoform 1 [Sus scrofa].
Length = 387
Score = 48.9 bits (115), Expect = 9e-06
Identities = 68/291 (23%), Positives = 96/291 (32%), Gaps = 20/291 (6%)
Frame = +2
Query: 422 PQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSP--GVAPSRHTVQPFHHHPPTAL 595
P P P G G++Q P P ++P+ G P+ H + P
Sbjct: 76 PAPPTQNMPMGPGGMNQSGP----PPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP--- 128
Query: 596 HGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVN 775
H P P P Q LN ++ S PS + + G Y+ S+ + + N
Sbjct: 129 ---GPNHMPMQGPGPNQ--------LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQN 177
Query: 776 NTGMNQNLGLTNNTP---MNQSVPRYP--------NAVGFPSNSGQGLMHQQPVHPSGSL 922
M+Q + N P MN + P P GQ QQP P G +
Sbjct: 178 QMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQP--PMGMM 235
Query: 923 NQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHP 1102
Q+N Q Q PP P + S Q G G P + +
Sbjct: 236 GQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ----QYY 291
Query: 1103 PPGALGIGQRS---VGPRNMQ----QSRPFMGMSSAPRELAGHLRPNGCPG 1234
P G GQ+ GP Q Q + + G P + G+ G PG
Sbjct: 292 PDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG 342
>ref|XP_003356436.1| PREDICTED: protein SSXT-like [Sus scrofa].
Length = 387
Score = 48.9 bits (115), Expect = 9e-06
Identities = 68/291 (23%), Positives = 96/291 (32%), Gaps = 20/291 (6%)
Frame = +2
Query: 422 PQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSP--GVAPSRHTVQPFHHHPPTAL 595
P P P G G++Q P P ++P+ G P+ H + P
Sbjct: 76 PAPPTQNMPMGPGGMNQSGP----PPPPRSHNMPSDGMVGGGPPAPHMQNQMNGQMP--- 128
Query: 596 HGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVN 775
H P P P Q LN ++ S PS + + G Y+ S+ + + N
Sbjct: 129 ---GPNHMPMQGPGPNQ--------LNMTNSSMNMPSSSHGSMGGYNHSVPSSQSMPVQN 177
Query: 776 NTGMNQNLGLTNNTP---MNQSVPRYP--------NAVGFPSNSGQGLMHQQPVHPSGSL 922
M+Q + N P MN + P P GQ QQP P G +
Sbjct: 178 QMTMSQGQPMGNYGPRPNMNMQPNQGPMMHQQPPSQQYNMPQGGGQHYQGQQP--PMGMM 235
Query: 923 NQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHP 1102
Q+N Q Q PP P + S Q G G P + +
Sbjct: 236 GQVNQGNHMMGQRQIPPYRPPQQGPPQQYSGQEDYYGDQYSHGGQGPPEGMNQ----QYY 291
Query: 1103 PPGALGIGQRS---VGPRNMQ----QSRPFMGMSSAPRELAGHLRPNGCPG 1234
P G GQ+ GP Q Q + + G P + G+ G PG
Sbjct: 292 PDGNSQYGQQQDAYQGPPPQQGYPPQQQQYPGQQGYPGQQQGYGPSQGGPG 342
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 39,796,422
Number of extensions: 1195386
Number of successful extensions: 7870
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7125
Number of HSP's successfully gapped: 5
Length of query: 573
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 469
Effective length of database: 8,754,644
Effective search space: 4105928036
Effective search space used: 4105928036
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074886.1| chromodomain-helicase-DNA-binding protein 7 ... 857 0.0
Alignment gi|NP_001078961.1| arginine-glutamic acid dipeptide repeats pro... 55 2e-07
Alignment gi|NP_065254.3| bromodomain-containing protein 4 isoform 1 [Mus... 52 1e-06
Alignment gi|NP_853522.2| polycystic kidney disease protein 1-like 3 isof... 50 5e-06
Alignment gi|NP_525024.1| cortactin-binding protein 2 [Mus musculus]. 50 5e-06
Alignment gi|NP_001034789.2| polycystic kidney disease protein 1-like 3 i... 50 5e-06
Alignment gi|NP_031907.2| atrophin-1 [Mus musculus]. 49 9e-06
>ref|NP_001074886.1| chromodomain-helicase-DNA-binding protein 7 [Mus musculus].
Length = 2986
Score = 857 bits (2213), Expect = 0.0
Identities = 428/579 (73%), Positives = 451/579 (77%), Gaps = 6/579 (1%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHY+QYEQ KMHLMDQPNRMM +APGNGLASPHSQYHTPPVPQVPHGGG GGQMG
Sbjct: 65 KLTHFDHYSQYEQ-KMHLMDQPNRMMGSAPGNGLASPHSQYHTPPVPQVPHGGGGGGQMG 123
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
VYPG+QNERHGQSFVD GS+WGPRAV VPDQIRA
Sbjct: 124 VYPGIQNERHGQSFVDGGSMWGPRAVQVPDQIRAPYQQQQPQPAPSGPPAQGHPQHMQQM 183
Query: 362 XXXXXXYLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPGV 541
YLARGDFSMQQHGQPQ RM QF QGQEGLSQG+PFI TSGPGHLSH+P QSP +
Sbjct: 184 GS----YLARGDFSMQQHGQPQQRMGQFSQGQEGLSQGSPFIATSGPGHLSHMPQQSPSM 239
Query: 542 APS-RHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLN 718
APS RH VQ HH P ALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSR+QT PSPT+N
Sbjct: 240 APSLRHPVQQQFHHHPAALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRNQTVPSPTVN 299
Query: 719 NSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQ 898
NSGQYSRYPYSNLNQGLVN+TGMNQNLGLTN+TPMNQSVPRYPNAVGFPSNSGQGL+HQQ
Sbjct: 300 NSGQYSRYPYSNLNQGLVNSTGMNQNLGLTNSTPMNQSVPRYPNAVGFPSNSGQGLVHQQ 359
Query: 899 PVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDVG 1078
P+H SGSLNQMNTQTMHPSQPQGTYASPPPMSPMKA+SNPAGTPPPQVRPGSAG+PM+VG
Sbjct: 360 PIHSSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGMPMEVG 419
Query: 1079 SYPTVPHP-----PPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGL 1243
SYP +PHP PPGA+GIGQR++GPRNMQQ R FMGMSSAPREL GH+RPNGCPGVGL
Sbjct: 420 SYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQPRSFMGMSSAPRELTGHMRPNGCPGVGL 479
Query: 1244 ADPQALQERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPQ 1423
ADPQA+QER PTC SPQ
Sbjct: 480 ADPQAIQERLIPGQQHPGQQPSFQQLPTC-PPLQPHPGLHQSSPPHPHHQPWAQLHPSPQ 538
Query: 1424 NTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXNNH 1603
NTPQKVPV QHSPSEPFLEKPVPDMTQVS NAQLVKSDDYLPSIE NNH
Sbjct: 539 NTPQKVPVHQHSPSEPFLEKPVPDMTQVSAQNAQLVKSDDYLPSIEQQPQQKKKKKKNNH 598
Query: 1604 IVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
I A D SK FGKDD PGGV+ QEL RNSLD SQEEKKKK
Sbjct: 599 IAAGDSSKGFGKDDFPGGVENQELRRNSLDVSQEEKKKK 637
>ref|NP_001078961.1| arginine-glutamic acid dipeptide repeats protein [Mus musculus].
Length = 1558
Score = 55.1 bits (131), Expect = 2e-07
Identities = 72/286 (25%), Positives = 105/286 (36%), Gaps = 22/286 (7%)
Frame = +2
Query: 401 SMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQ-SPGVAPSRHTVQPFHH 577
S Q H QP SQ P G L G P + GP +P+Q S G P + H
Sbjct: 829 SAQPHPQPSLH-SQGPPGPHSLQTG-PLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHP 886
Query: 578 HPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFS--SRSQTAPSPTLNNSGQYSRYPYS 751
H L A P+ PP++ + P L T P P L + P+
Sbjct: 887 HSTIQLPASQSALQPQ---QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHL 943
Query: 752 N------LNQGLVNNTGMNQNLGLTNNTPMNQSVPRY---PNAVGFPSNSGQ--GLMHQQ 898
+ LN L + L+ + P + P P + PS+ Q GL Q
Sbjct: 944 SGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQ 1003
Query: 899 PV------HPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKA--LSNPAGTPPPQVRPGS 1054
+ HP+ L+Q+ +Q+ P P PPP++P S P P +P
Sbjct: 1004 SLPPPAASHPTTGLHQVPSQSPFPQHP-FVPGGPPPITPPSCPPTSTPPAGPSSSSQPPC 1062
Query: 1055 AGIPMDVGSYPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAP 1192
+ GS P P P A+ I + ++ +S P S +P
Sbjct: 1063 SAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSP 1108
Score = 53.9 bits (128), Expect = 4e-07
Identities = 70/278 (25%), Positives = 97/278 (34%), Gaps = 41/278 (14%)
Frame = +2
Query: 401 SMQQHGQPQPRMSQFPQGQEGLSQ----GNPFITTSGPGHLSHV------PAQSPGVAPS 550
+ QQ Q QP Q P G G P + T GP + PA S +
Sbjct: 729 AQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQT 788
Query: 551 RHTVQPFHHHPPTALHGESVAHSPRF-SPNPPQQGAVRPQTLNFSSRSQTAPSPTLNNSG 727
+ TV P H T + H PR SP+PP Q P + S +Q P P+L++ G
Sbjct: 789 QSTVAPAAH---THIQQAPTLHPPRLPSPHPPLQPMTAPPS---QSSAQPHPQPSLHSQG 842
Query: 728 QYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQ------GLM 889
P+S L+ + G Q GL + Q A P ++ Q L
Sbjct: 843 PPG--PHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQ 900
Query: 890 HQQPVH-----------------PSGSLNQMNTQTMHPSQPQGTYASP-------PPMSP 997
QQP P+ + Q+ H P + SP PP
Sbjct: 901 PQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPA 960
Query: 998 MKALSNPAGTPPPQVRPGSAGIPMDVGSYPTVPHPPPG 1111
+K LS+ + PP P + P+ P PPG
Sbjct: 961 LKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 998
>ref|NP_065254.3| bromodomain-containing protein 4 isoform 1 [Mus musculus].
Length = 1400
Score = 52.4 bits (124), Expect = 1e-06
Identities = 78/305 (25%), Positives = 97/305 (31%), Gaps = 30/305 (9%)
Frame = +2
Query: 407 QQHGQPQPRMSQFPQGQEGLSQGNP--FITTSGP--------------GHLSHVPAQSPG 538
QQ P P PQ + +P FIT P GH + P
Sbjct: 775 QQQPPPPPPPPSMPQQTAPAMKSSPPPFITAQVPVLEPQLPGSVFDPIGHFTQPILHLPQ 834
Query: 539 VAPSRHTVQPFHHHPPTALHGESVAHSPRFS---PNPPQQGAVRPQTLNFSSRSQTAPSP 709
H QP H P L+ +V P P P + + R L A SP
Sbjct: 835 PELPPHLPQPPEHSTPPHLNQHAVVSPPALHNALPQQPSRPSNRAAALPPKPTRPPAVSP 894
Query: 710 TLNNSGQYSRYPYSNLNQGLVNN--------TGMNQNLGLTNNTPMNQSVPRYPNAVGFP 865
L + P + Q L+ + T M L L + P P+ V
Sbjct: 895 ALAQPPLLPQPPMAQPPQVLLEDEEPPAPPLTSMQMQLYLQQLQKVQPPTPLLPS-VKVQ 953
Query: 866 SNSGQGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVR 1045
S L P HPS Q+ Q P PQ PPP + P P
Sbjct: 954 SQPPPPL--PPPPHPSVQQQQLQPQPPPPPPPQ---PQPPPQQQHQPPPRPVHLPS---M 1005
Query: 1046 PGSAGI---PMDVGSYPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLR 1216
P SA I P G PT HPPPG + P+ + Q P + AGHLR
Sbjct: 1006 PFSAHIQQPPPPPGQQPT--HPPPGQQPPPPQPAKPQQVIQHHPSPRHHKSDPYSAGHLR 1063
Query: 1217 PNGCP 1231
P
Sbjct: 1064 EAPSP 1068
>ref|NP_853522.2| polycystic kidney disease protein 1-like 3 isoform b [Mus musculus].
Length = 2151
Score = 50.1 bits (118), Expect = 5e-06
Identities = 57/232 (24%), Positives = 87/232 (37%), Gaps = 4/232 (1%)
Frame = +2
Query: 566 PFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYP 745
P PP S + SP + + PQ + +S S + P T S P
Sbjct: 247 PASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGT-------SDTP 299
Query: 746 YSNLNQGLVNNTGMNQNLGL-TNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQPVHPSGSL 922
S+ + + T + + T++TP + S P+ +A S+ QG P S
Sbjct: 300 ASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQG-TSDTPASSSPPQ 358
Query: 923 NQMNTQTMHPSQPQGTYASPPPMSPMKALS-NPAGTPPPQVRPGSAGI--PMDVGSYPTV 1093
++T + S PQGT +P SP + S PA PPQ + G P V + V
Sbjct: 359 GTLDTPS-SSSPPQGTSDTPASSSPPQGTSETPASNSPPQGTSETPGFSSPPQVTTATLV 417
Query: 1094 PHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLAD 1249
PP S P + P SS+P ++ + P G +D
Sbjct: 418 SSSPPQVTSETPASSSPTQVTSETP---ASSSPTQVTSDTPASNSPPQGTSD 466
>ref|NP_525024.1| cortactin-binding protein 2 [Mus musculus].
Length = 1648
Score = 50.1 bits (118), Expect = 5e-06
Identities = 61/258 (23%), Positives = 90/258 (34%), Gaps = 2/258 (0%)
Frame = +2
Query: 488 TTSGPGHLSHVPAQSPGVAPSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQ 667
T S P + AQ+PG AP H+ P H HSP + +P ++
Sbjct: 396 TPSTPSSTAPAAAQTPGTAPQNHSQAPTVHS----------LHSPCANTHPGLNPRIQAA 445
Query: 668 TLNFSSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYP 847
F + N SR LV L NT + Q++ R+
Sbjct: 446 RFRFQGNANDPDQNGNNTQSPPSRDVSPTSRDNLVAKQ-------LARNT-VTQALSRFT 497
Query: 848 NAVGFPSNSGQGLMHQQPVHPSGSLNQMN-TQTMHPSQPQGTYASPPPMSPMK-ALSNPA 1021
+ P + P +G+ + T P + +PPP+ P K LS
Sbjct: 498 S----PQAGASSRLGVSPGGDAGTCPPVGRTGLKTPGAARVDRGNPPPIPPKKPGLSQTP 553
Query: 1022 GTPPPQVRPGSAGIPMDVGSYPTVPHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPREL 1201
P PQ+R +AG +D + PP L G + V N+ +S +L
Sbjct: 554 SPPHPQLRASNAGAKVD----NKIVASPPSTLPQGTKVVNEENVPKSSSPQLPPKPSIDL 609
Query: 1202 AGHLRPNGCPGVGLADPQ 1255
+ P GCP LA Q
Sbjct: 610 T--VAPAGCPVSALATSQ 625
>ref|NP_001034789.2| polycystic kidney disease protein 1-like 3 isoform a [Mus musculus].
Length = 2201
Score = 50.1 bits (118), Expect = 5e-06
Identities = 57/232 (24%), Positives = 87/232 (37%), Gaps = 4/232 (1%)
Frame = +2
Query: 566 PFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTLNNSGQYSRYP 745
P PP S + SP + + PQ + +S S + P T S P
Sbjct: 247 PASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQGT-------SDTP 299
Query: 746 YSNLNQGLVNNTGMNQNLGL-TNNTPMNQSVPRYPNAVGFPSNSGQGLMHQQPVHPSGSL 922
S+ + + T + + T++TP + S P+ +A S+ QG P S
Sbjct: 300 ASSSPPQVTSATSASSSPPQGTSDTPASSSPPQVTSATSASSSPPQG-TSDTPASSSPPQ 358
Query: 923 NQMNTQTMHPSQPQGTYASPPPMSPMKALS-NPAGTPPPQVRPGSAGI--PMDVGSYPTV 1093
++T + S PQGT +P SP + S PA PPQ + G P V + V
Sbjct: 359 GTLDTPS-SSSPPQGTSDTPASSSPPQGTSETPASNSPPQGTSETPGFSSPPQVTTATLV 417
Query: 1094 PHPPPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVGLAD 1249
PP S P + P SS+P ++ + P G +D
Sbjct: 418 SSSPPQVTSETPASSSPTQVTSETP---ASSSPTQVTSDTPASNSPPQGTSD 466
>ref|NP_031907.2| atrophin-1 [Mus musculus].
Length = 1175
Score = 49.3 bits (116), Expect = 9e-06
Identities = 67/262 (25%), Positives = 99/262 (37%), Gaps = 13/262 (4%)
Frame = +2
Query: 500 PGHLSHVPAQSPGVAPSRHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNF 679
PG + + S G+ S+ +P+H PP P F P+PP P +
Sbjct: 138 PGSVENDSDSSSGL--SQGPARPYH--PP-----------PLFPPSPPP-----PDSTPR 177
Query: 680 SSRSQTAPSPTLNNSGQYSRY--PYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNA 853
S P P++ +G ++ P S L QG P + P +P
Sbjct: 178 QPESGFEPHPSVPPTGYHAPMEPPTSRLFQG-----------------PPPGAPPTHPQL 220
Query: 854 VGFPSNSGQGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPP 1033
+P N+ G++ P+ P G + P G PPP +P+ S+ A P
Sbjct: 221 --YPGNASGGVLSGPPMGPKGGAAASSV-----GAPSGGKQHPPPTTPIPISSSGASGAP 273
Query: 1034 PQVRPGSAGIPMDVGSYPTVPH-----------PPPGALGIGQRSVGPRNMQQSRPFMGM 1180
P +P SA P+ GS P+ P PPP AL P N + P GM
Sbjct: 274 P-AKPPSA--PVGGGSLPSAPPPASFPHVTPNLPPPPAL-------RPLNNASASP-PGM 322
Query: 1181 SSAPRELAGHLRPNGCPGVGLA 1246
+ P + GHL G G++
Sbjct: 323 GAQP--IPGHLPSPHAMGQGMS 342
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 52,708,059
Number of extensions: 1516930
Number of successful extensions: 9546
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 8603
Number of HSP's successfully gapped: 10
Length of query: 573
Length of database: 15,617,559
Length adjustment: 107
Effective length of query: 466
Effective length of database: 12,403,707
Effective search space: 5780127462
Effective search space used: 5780127462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_060250.2| chromodomain-helicase-DNA-binding protein 7 [Ho... 915 0.0
Alignment gi|NP_079410.4| chromodomain-helicase-DNA-binding protein 9 [Ho... 61 4e-09
Alignment gi|NP_001007027.1| atrophin-1 [Homo sapiens]. 51 4e-06
Alignment gi|NP_001931.2| atrophin-1 [Homo sapiens]. 51 4e-06
>ref|NP_060250.2| chromodomain-helicase-DNA-binding protein 7 [Homo sapiens].
Length = 2997
Score = 915 bits (2365), Expect = 0.0
Identities = 449/580 (77%), Positives = 465/580 (80%), Gaps = 7/580 (1%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPVPQVPHGGGSGGQMG 181
KLTHFDHYNQYEQQKMHLMDQPNRMMSN PGNGLASPHSQYHTPPVPQVPHGG GGQMG
Sbjct: 65 KLTHFDHYNQYEQQKMHLMDQPNRMMSNTPGNGLASPHSQYHTPPVPQVPHGGSGGGQMG 124
Query: 182 VYPGMQNERHGQSFVDSGSLWGPRAVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXXXX 361
VYPGMQNERHGQSFVDS S+WGPRAV VPDQIRA
Sbjct: 125 VYPGMQNERHGQSFVDSSSMWGPRAVQVPDQIRAPYQQQQPQPQPPQPAPSGPPAQGHPQ 184
Query: 362 XXXXXX-YLARGDFSMQQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVPAQSPG 538
Y+ARGDFSMQQHGQPQ RMSQF QGQEGL+QGNPFI TSGPGHLSHVP QSP
Sbjct: 185 HMQQMGSYMARGDFSMQQHGQPQQRMSQFSQGQEGLNQGNPFIATSGPGHLSHVPQQSPS 244
Query: 539 VAPS-RHTVQPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAPSPTL 715
+APS RH+VQ FHHHP TALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQT PSPT+
Sbjct: 245 MAPSLRHSVQQFHHHPSTALHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTVPSPTI 304
Query: 716 NNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQ 895
NNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQ
Sbjct: 305 NNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQGLMHQ 364
Query: 896 QPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAGIPMDV 1075
QP+HPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKA+SNPAGTPPPQVRPGSAGIPM+V
Sbjct: 365 QPIHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKAMSNPAGTPPPQVRPGSAGIPMEV 424
Query: 1076 GSYPTVPHP-----PPGALGIGQRSVGPRNMQQSRPFMGMSSAPRELAGHLRPNGCPGVG 1240
GSYP +PHP PPGA+GIGQR++GPRNMQQSRPF+GMSSAPREL GH+RPNGCPGVG
Sbjct: 425 GSYPNMPHPQPSHQPPGAMGIGQRNMGPRNMQQSRPFIGMSSAPRELTGHMRPNGCPGVG 484
Query: 1241 LADPQALQERXXXXXXXXXXXXXXXXXPTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXSP 1420
L DPQA+QER PTC SP
Sbjct: 485 LGDPQAIQERLIPGQQHPGQQPSFQQLPTCPPLQPHPGLHHQSSPPHPHHQPWAQLHPSP 544
Query: 1421 QNTPQKVPVPQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEXXXXXXXXXXXNN 1600
QNTPQKVPV QHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIE NN
Sbjct: 545 QNTPQKVPVHQHSPSEPFLEKPVPDMTQVSGPNAQLVKSDDYLPSIEQQPQQKKKKKKNN 604
Query: 1601 HIVAEDPSKSFGKDDVPGGVDTQELNRNSLDGSQEEKKKK 1720
HIVAEDPSK FGKDD PGGVD QELNRNSLDGSQEEKKKK
Sbjct: 605 HIVAEDPSKGFGKDDFPGGVDNQELNRNSLDGSQEEKKKK 644
>ref|NP_079410.4| chromodomain-helicase-DNA-binding protein 9 [Homo sapiens].
Length = 2881
Score = 60.8 bits (146), Expect = 4e-09
Identities = 76/341 (22%), Positives = 136/341 (39%), Gaps = 15/341 (4%)
Frame = +2
Query: 2 KLTHFDHYNQYEQQKMHLMDQPNRMMSNAPGNGLASPHSQYHTPPV-PQVPHGGGSGGQM 178
K+T F+ NQ++ K H ++Q +P + SPHSQ++ P+ PQ
Sbjct: 64 KMTDFEQLNQFDSIKFHHVNQS----FGSPAEHVLSPHSQFNCSPIHPQ-------NQPN 112
Query: 179 GVYPGMQNERHGQSFVDSGSLWGPR-AVPVPDQIRAXXXXXXXXXXXXXXXXXXXXXXXX 355
G++P + D +WG + A + +Q
Sbjct: 113 GLFPDVS---------DGSPMWGHQTATTISNQ----------------NGSPFHQQGHS 147
Query: 356 XXXXXXXXYLARGDFSMQQHGQPQPRMSQFPQ---------GQEGLSQGNPFITTSGPGH 508
++A DF++ Q + Q + + GQ LSQ F+ SGP
Sbjct: 148 HSMHQNKSFVAHHDFALFQANEQQTQCTSLRSQQNRNNLNPGQNSLSQSKNFMNVSGPHR 207
Query: 509 LS-HVPAQSPGVAPSRHTV--QPFHHHPPTALHGESVAHSPRFSPNPPQQGAVRPQTLNF 679
++ + P Q + S+ ++ Q F + H + Q+G NF
Sbjct: 208 VNVNHPPQMTNASNSQQSISMQQFSQTSNPSAHFHKCSSH--------QEG-------NF 252
Query: 680 SSRSQTAPSPTLNNSGQYSRYPYSNLNQGLVNNTGMNQNLGLTNNTPMNQSVPRYPNAVG 859
+ S S +++NS Q+S + YS + + N+ + + L +N NQ++ + +
Sbjct: 253 NGPSPNMTSCSVSNSQQFSSH-YSFSSNHISPNSLLQSSAVLASNHT-NQTLSDFTGSNS 310
Query: 860 FPSNSG-QGLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYAS 979
F + G + Q ++P+ SLN N Q +H S PQG Y++
Sbjct: 311 FSPHRGIKQESTQHILNPNTSLNSNNFQILHSSHPQGNYSN 351
>ref|NP_001007027.1| atrophin-1 [Homo sapiens].
Length = 1190
Score = 50.8 bits (120), Expect = 4e-06
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 22/255 (8%)
Frame = +2
Query: 407 QQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVP--AQSPGVAPSRHT------- 559
+QH P +S G G P T G G+L P A P V P+
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPL 310
Query: 560 -----------VQPFHHHPPTA-LHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAP 703
QP H P+ G+ + P P P + + P + S +AP
Sbjct: 311 NNASASPPGLGAQPLPGHLPSPHAMGQGMGGLP---PGPEKGPTLAPSPHSLPPASSSAP 367
Query: 704 SPTLNNSGQYSRYPYSNLNQG-LVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQ 880
+P + R+PYS+ + ++ + + + P +Q++P YP++ FP +
Sbjct: 368 APPM-------RFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS--FPPPTSL 418
Query: 881 GLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAG 1060
+ +Q P + SL PSQ + PPP + L+N P P
Sbjct: 419 SVSNQPPKYTQPSL---------PSQAVWSQGPPPPPPYGRLLANSNAHPGP-------- 461
Query: 1061 IPMDVGSYPTVPHPP 1105
P G+ T HPP
Sbjct: 462 FPPSTGAQSTA-HPP 475
>ref|NP_001931.2| atrophin-1 [Homo sapiens].
Length = 1190
Score = 50.8 bits (120), Expect = 4e-06
Identities = 60/255 (23%), Positives = 94/255 (36%), Gaps = 22/255 (8%)
Frame = +2
Query: 407 QQHGQPQPRMSQFPQGQEGLSQGNPFITTSGPGHLSHVP--AQSPGVAPSRHT------- 559
+QH P +S G G P T G G+L P A P V P+
Sbjct: 251 KQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPPANFPHVTPNLPPPPALRPL 310
Query: 560 -----------VQPFHHHPPTA-LHGESVAHSPRFSPNPPQQGAVRPQTLNFSSRSQTAP 703
QP H P+ G+ + P P P + + P + S +AP
Sbjct: 311 NNASASPPGLGAQPLPGHLPSPHAMGQGMGGLP---PGPEKGPTLAPSPHSLPPASSSAP 367
Query: 704 SPTLNNSGQYSRYPYSNLNQG-LVNNTGMNQNLGLTNNTPMNQSVPRYPNAVGFPSNSGQ 880
+P + R+PYS+ + ++ + + + P +Q++P YP++ FP +
Sbjct: 368 APPM-------RFPYSSSSSSSAAASSSSSSSSSSASPFPASQALPSYPHS--FPPPTSL 418
Query: 881 GLMHQQPVHPSGSLNQMNTQTMHPSQPQGTYASPPPMSPMKALSNPAGTPPPQVRPGSAG 1060
+ +Q P + SL PSQ + PPP + L+N P P
Sbjct: 419 SVSNQPPKYTQPSL---------PSQAVWSQGPPPPPPYGRLLANSNAHPGP-------- 461
Query: 1061 IPMDVGSYPTVPHPP 1105
P G+ T HPP
Sbjct: 462 FPPSTGAQSTA-HPP 475
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 62,711,635
Number of extensions: 1850830
Number of successful extensions: 11979
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 10853
Number of HSP's successfully gapped: 5
Length of query: 573
Length of database: 18,297,164
Length adjustment: 108
Effective length of query: 465
Effective length of database: 14,737,052
Effective search space: 6852729180
Effective search space used: 6852729180
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008685
(1720 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 2119 0.0
>Sscrofa_Chr04
|| Length = 143465943
Score = 2119 bits (1069), Expect = 0.0
Identities = 1099/1114 (98%)
Strand = Plus / Minus
Query: 340 tgggcagggccatcccccgcacctgcagcagatgggcggctacctggcgcgtggggactt 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79152028 tgggcagggccatcccccgcacctgcagcagatgggcggctacctggcgcgtggggactt 79151969
Query: 400 ctccatgcagcagcacggccagccgcagccgaggatgagccagtttccccagggtcagga 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151968 ctccatgcagcagcacggccagccgcagccgaggatgagccagtttccccagggtcagga 79151909
Query: 460 gggcctcagccagggaaaccctttcatcaccacctcgggccctggccacttgtcgcacgt 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151908 gggcctcagccagggaaaccctttcatcaccacctcgggccctggccacttgtcgcacgt 79151849
Query: 520 gcccgcgcagagccccggcgtggcgccctcacgccacacagtgcagcccttccaccacca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151848 gcccgcgcagagccccggcgtggcgccctcacgccacacagtgcagcccttccaccacca 79151789
Query: 580 nnnnnnnactgctctccacggagaatccgtcgcccacagccccaggttctcccctaaccc 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151788 cccccccactgctctccacggagaatccgtcgcccacagccccaggttctcccctaaccc 79151729
Query: 640 tcctcagcaaggggctgttaggccacaaacccttaactttagttctcggagccagacggc 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151728 tcctcagcaaggggctgttaggccacaaacccttaactttagttctcggagccagacggc 79151669
Query: 700 cccctcacctactctaaacaactcagggcagtattctcgctatccttacagtaacctaaa 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151668 cccctcacctactctaaacaactcagggcagtattctcgctatccttacagtaacctaaa 79151609
Query: 760 tcagggattagttaacaatacagggatgaatcaaaatttaggccttacaaataatactcc 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151608 tcagggattagttaacaatacagggatgaatcaaaatttaggccttacaaataatactcc 79151549
Query: 820 aatgaatcagtccgtaccaagataccccaacgccgtaggattcccgtccaacagtggtca 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151548 aatgaatcagtccgtaccaagataccccaacgccgtaggattcccgtccaacagtggtca 79151489
Query: 880 aggactaatgcaccagcagcccgtccaccccagcggctcactgaaccaaatgaacacaca 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151488 aggactaatgcaccagcagcccgtccaccccagcggctcactgaaccaaatgaacacaca 79151429
Query: 940 aactatgcatccttcacagcctcagggaacgtatgcctctccgcctcccatgtcacccat 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151428 aactatgcatccttcacagcctcagggaacgtatgcctctccgcctcccatgtcacccat 79151369
Query: 1000 gaaagcgctgagtaacccggcagggacgnnnnnnnngcaggtcaggccggggagcgctgg 1059
|||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 79151368 gaaagcgctgagtaacccggcagggacgccccccccgcaggtcaggccggggagcgctgg 79151309
Query: 1060 gatcccgatggacgtcggcagttaccccaccgtgccccacccgcccccgggggccctggg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151308 gatcccgatggacgtcggcagttaccccaccgtgccccacccgcccccgggggccctggg 79151249
Query: 1120 catcggacagaggagcgtgggaccccggaacatgcagcagtcccgtccgtttatgggcat 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151248 catcggacagaggagcgtgggaccccggaacatgcagcagtcccgtccgtttatgggcat 79151189
Query: 1180 gtcctcagccccaagggagctggccgggcacctgagaccgaacgggtgtcctggcgtggg 1239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151188 gtcctcagccccaagggagctggccgggcacctgagaccgaacgggtgtcctggcgtggg 79151129
Query: 1240 cctcgccgacccgcaggccctccaggaacgactgctccccggccagcagcaccccggcca 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151128 cctcgccgacccgcaggccctccaggaacgactgctccccggccagcagcaccccggcca 79151069
Query: 1300 gcagccgtccttccagcagttgccaacctgccctccgctgcagccccacccgggcctgca 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151068 gcagccgtccttccagcagttgccaacctgccctccgctgcagccccacccgggcctgca 79151009
Query: 1360 ccaccagccttcgcccccacacccgcaccaccagccctgggcacagctccacccgtcgcc 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79151008 ccaccagccttcgcccccacacccgcaccaccagccctgggcacagctccacccgtcgcc 79150949
Query: 1420 ccagaacaccccgcagaaagtgcctgtgccgcag 1453
||||||||||||||||||||||||||||||||||
Sbjct: 79150948 ccagaacaccccgcagaaagtgcctgtgccgcag 79150915
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1 caagctgacccacttcgaccactataaccagtacgagcaacagaagatgcatctgatgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79152367 caagctgacccacttcgaccactataaccagtacgagcaacagaagatgcatctgatgga 79152308
Query: 61 tcagcccaacagaatgatgagtaatgcccctgggaacggactggcgtctccccactcaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79152307 tcagcccaacagaatgatgagtaatgcccctgggaacggactggcgtctccccactcaca 79152248
Query: 121 gtaccacacccctcctgtcccccaggtcccccacgggggtggcagcggcggccagatggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79152247 gtaccacacccctcctgtcccccaggtcccccacgggggtggcagcggcggccagatggg 79152188
Query: 181 cgtctaccccggcatgcagaacgagaggcacggccagtctttcgtggacagtggctctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79152187 cgtctaccccggcatgcagaacgagaggcacggccagtctttcgtggacagtggctctct 79152128
Query: 241 gtggg 245
|||||
Sbjct: 79152127 gtggg 79152123
Score = 375 bits (189), Expect = e-101
Identities = 233/255 (91%)
Strand = Plus / Minus
Query: 1452 agcattctccatcggagccctttctagagaaaccagtgccggatatgactcaggttagtg 1511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79115920 agcattctccatcggagccctttctagagaaaccagtgccggatatgactcaggttagtg 79115861
Query: 1512 gaccgaacgcccagctagtgaagagtgatgattacctgccgtccatagaacagcagccac 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79115860 gaccgaacgcccagctagtgaagagtgatgattacctgccgtccatagaacagcagccac 79115801
Query: 1572 agcnnnnnnnnnnnnnnnnnnnnnncaaccacatcgttgcagaggatcccagtaaaagtt 1631
||| |||||||||||||||||||||||||||||||||||
Sbjct: 79115800 agcagaagaagaagaaaaagaaaaacaaccacatcgttgcagaggatcccagtaaaagtt 79115741
Query: 1632 tcggtaaagatgacgtccctggtggggttgatacccaggaactaaacaggaactcactag 1691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79115740 tcggtaaagatgacgtccctggtggggttgatacccaggaactaaacaggaactcactag 79115681
Query: 1692 atgggtcccaagaag 1706
|||||||||||||||
Sbjct: 79115680 atgggtcccaagaag 79115666
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 37,190,206
Number of extensions: 246
Number of successful extensions: 246
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 5
Length of query: 1720
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1698
Effective length of database: 2,808,408,574
Effective search space: 4768677758652
Effective search space used: 4768677758652
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)