Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069524.1| protein phosphatase methylesterase 1 [Bos ta... 441 e-124
>ref|NP_001069524.1| protein phosphatase methylesterase 1 [Bos taurus].
Length = 380
Score = 441 bits (1134), Expect = e-124
Identities = 227/253 (89%), Positives = 228/253 (90%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLRGHGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
+NSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
Sbjct: 121 RNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 37,522,843
Number of extensions: 1044273
Number of successful extensions: 3560
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3557
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,306,398
Effective search space: 3047262774
Effective search space used: 3047262774
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_860745.1| PREDICTED: similar to protein phosphatase methy... 437 e-123
Alignment gi|XP_850122.1| PREDICTED: similar to protein phosphatase methy... 437 e-123
Alignment gi|XP_860645.1| PREDICTED: similar to protein phosphatase methy... 161 1e-39
Alignment gi|XP_860678.1| PREDICTED: similar to protein phosphatase methy... 132 5e-31
>ref|XP_860745.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
4 [Canis familiaris].
Length = 386
Score = 437 bits (1124), Expect = e-123
Identities = 226/253 (89%), Positives = 226/253 (89%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDFSPV WSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVSWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLRGHGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTAS NLVPSLLGLCMI
Sbjct: 121 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASCNLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
>ref|XP_850122.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
1 [Canis familiaris].
Length = 386
Score = 437 bits (1124), Expect = e-123
Identities = 226/253 (89%), Positives = 226/253 (89%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDFSPV WSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVSWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLRGHGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTAS NLVPSLLGLCMI
Sbjct: 121 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASCNLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
>ref|XP_860645.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
2 [Canis familiaris].
Length = 221
Score = 161 bits (407), Expect = 1e-39
Identities = 87/112 (77%), Positives = 87/112 (77%)
Frame = +1
Query: 610 MYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGR 789
MYGDLPPPIMLIGHSMGGAIAVHTAS NLVPSLLGLCMIDVVE
Sbjct: 1 MYGDLPPPIMLIGHSMGGAIAVHTASCNLVPSLLGLCMIDVVE----------------- 43
Query: 790 PKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEG 945
ENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEG
Sbjct: 44 -------ENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEG 88
>ref|XP_860678.1| PREDICTED: similar to protein phosphatase methylesterase 1 isoform
3 [Canis familiaris].
Length = 199
Score = 132 bits (332), Expect = 5e-31
Identities = 66/66 (100%), Positives = 66/66 (100%)
Frame = +1
Query: 748 MDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGS 927
MDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGS
Sbjct: 1 MDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGS 60
Query: 928 KSIVEG 945
KSIVEG
Sbjct: 61 KSIVEG 66
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 39,103,620
Number of extensions: 1070004
Number of successful extensions: 3984
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3979
Number of HSP's successfully gapped: 4
Length of query: 315
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 212
Effective length of database: 15,440,896
Effective search space: 3273469952
Effective search space used: 3273469952
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003357238.1| PREDICTED: protein phosphatase methylesteras... 442 e-124
>ref|XP_003357238.1| PREDICTED: protein phosphatase methylesterase 1-like [Sus scrofa].
Length = 386
Score = 442 bits (1137), Expect = e-124
Identities = 228/253 (90%), Positives = 228/253 (90%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLRGHGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
Sbjct: 121 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 24,190,518
Number of extensions: 669066
Number of successful extensions: 2386
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2379
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 216
Effective length of database: 8,879,129
Effective search space: 1917891864
Effective search space used: 1917891864
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_082568.1| protein phosphatase methylesterase 1 [Mus muscu... 438 e-123
>ref|NP_082568.1| protein phosphatase methylesterase 1 [Mus musculus].
Length = 386
Score = 438 bits (1127), Expect = e-123
Identities = 224/253 (88%), Positives = 228/253 (90%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDF+PVPWSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFTPVPWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLRGHGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
KNSEDLSAETMAKDVGNVVEAMYGDLPPP+MLIGHSMGGAIAVHTA++NLVPSLLGLCMI
Sbjct: 121 KNSEDLSAETMAKDVGNVVEAMYGDLPPPVMLIGHSMGGAIAVHTAAANLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 32,582,352
Number of extensions: 887700
Number of successful extensions: 3071
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3058
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 214
Effective length of database: 12,583,923
Effective search space: 2692959522
Effective search space used: 2692959522
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057231.1| protein phosphatase methylesterase 1 [Homo sapi... 438 e-123
>ref|NP_057231.1| protein phosphatase methylesterase 1 [Homo sapiens].
Length = 386
Score = 438 bits (1126), Expect = e-123
Identities = 226/253 (89%), Positives = 226/253 (89%)
Frame = +1
Query: 187 MSALEKSMHXXXXXXXXXXXXXXXXQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 366
MSALEKSMH QSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN
Sbjct: 1 MSALEKSMHLGRLPSRPPLPGSGGSQSGAKMRMGPGRKRDFSPVPWSQYFESMEDVEVEN 60
Query: 367 ETGKDTFRVYKSGSEGPVXXXXXXXXXSALSWAVFTAAIISRVQCRIVALDLRGHGETKV 546
ETGKDTFRVYKSGSEGPV SALSWAVFTAAIISRVQCRIVALDLR HGETKV
Sbjct: 61 ETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKV 120
Query: 547 KNSEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 726
KN EDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI
Sbjct: 121 KNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMI 180
Query: 727 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 906
DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG
Sbjct: 181 DVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEG 240
Query: 907 ITSPEGSKSIVEG 945
ITSPEGSKSIVEG
Sbjct: 241 ITSPEGSKSIVEG 253
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 38,460,265
Number of extensions: 1054498
Number of successful extensions: 3694
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3688
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 213
Effective length of database: 14,934,836
Effective search space: 3181120068
Effective search space used: 3181120068
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008702
(947 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr09 545 e-152
>Sscrofa_Chr09
|| Length = 153670197
Score = 545 bits (275), Expect = e-152
Identities = 285/287 (99%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 1 gcacttccggtggaagcgcaaggcgagggggtggagtctacggagccggtgggcggtgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349707 gcacttccggtggaagcgcaaggcgagggggtggagtctacggagccggtgggcggtgct 9349766
Query: 61 gccggtagctgggtgctgtccaaaggctacagggcgtcgctaggggagcgagctgtgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349767 gccggtagctgggtgctgtccaaaggctacagggcgtcgctaggggagcgagctgtgacc 9349826
Query: 121 ggttgggccgctcttagcgtgggacggagcttcggctacagttcggctacctgcggcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349827 ggttgggccgctcttagcgtgggacggagcttcggctacagttcggctacctgcggcctc 9349886
Query: 181 cccttcatgtcggccctcgagaagagcatgcacctcggccgtctgccctctcgcccgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9349887 cccttcatgtcggccctcgagaagagcatgcacctcggccgtctgccctctcgcccgcct 9349946
Query: 241 ctccccggcagcgggggcagtcagagcggagccaagatgcgaatggg 287
|| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 9349947 ct-cccgggagcgggggcagtcagagcggagccaagatgcgaatggg 9349992
Score = 305 bits (154), Expect = 2e-80
Identities = 157/158 (99%)
Strand = Plus / Plus
Query: 585 agatgtgggcaatgtggttgaagccatgtacggggacctcccccctccaattatgctgat 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9417407 agatgtgggcaatgtggttgaagccatgtacggggacctcccccctccaattatgctgat 9417466
Query: 645 tggacatagcatgggcggtgctattgcagtccacacagcctcatccaacctggtgccaag 704
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9417467 tggacatagcatgggcggtgctattgcagtccacacagcgtcatccaacctggtgccaag 9417526
Query: 705 cctcctgggtctgtgcatgattgatgttgtggaaggta 742
||||||||||||||||||||||||||||||||||||||
Sbjct: 9417527 cctcctgggtctgtgcatgattgatgttgtggaaggta 9417564
Score = 190 bits (96), Expect = 1e-45
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 287 gccctggaagaaagcgggacttttctcctgttccttggagtcagtactttgagtcaatgg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9400619 gccctggaagaaagcgggacttttctcctgttccttggagtcagtactttgagtcaatgg 9400678
Query: 347 aagatgtagaagtagagaatgaaactggcaaggata 382
||||||||||||||||||||||||||||||||||||
Sbjct: 9400679 aagatgtagaagtagagaatgaaactggcaaggata 9400714
Score = 186 bits (94), Expect = 1e-44
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 382 acttttcgagtttataagagtggctcagagggtcctgtcctactccttctgcatggagga 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9401248 acttttcgagtttataagagtggctcagagggtcctgtcctactccttctgcatggagga 9401307
Query: 442 ggccattctgccctttcctgggctgtgttcacgg 475
||||||||||||||||||||||||||||||||||
Sbjct: 9401308 ggccattctgccctttcctgggctgtgttcacgg 9401341
Score = 176 bits (89), Expect = 1e-41
Identities = 92/93 (98%)
Strand = Plus / Plus
Query: 738 aggtacagccatggatgcacttaatagcatgcagaatttcttacgtggtcgtcctaaaac 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9418811 aggtacagccatggatgcacttaatagcatgcagaatttcttacgtggtcgtcctaaaac 9418870
Query: 798 cttcaagtctctggagaatgccattgaatggag 830
||||||||||||||||||||| |||||||||||
Sbjct: 9418871 cttcaagtctctggagaatgctattgaatggag 9418903
Score = 139 bits (70), Expect = 3e-30
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 829 agtgtgaagagtggccagattcgaaatctggagtctgctcgagtctcaatggttggccaa 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9421112 agtgtgaagagtggccagattcgaaatctggagtctgctcgagtctcaatggttggccaa 9421171
Query: 889 gtcaaacagt 898
||||||||||
Sbjct: 9421172 gtcaaacagt 9421181
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 474 ggcagcaatcattagcagagttcagtgtaggattgtggctttggatcttcgaggtcatgg 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9411673 ggcagcaatcattagcagagttcagtgtaggattgtggctttggatcttcgaggtcatgg 9411732
Query: 534 tga 536
|||
Sbjct: 9411733 tga 9411735
Score = 105 bits (53), Expect = 4e-20
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 532 ggtgaaacaaaagtcaagaattctgaagacctgtctgcagaaacaatggcaaa 584
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9412166 ggtgaaacaaaagtcaagaattctgaagacctgtctgcagaaacaatggcaaa 9412218
Score = 101 bits (51), Expect = 7e-19
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 897 gtgtgaaggaattacaagtccagaaggctcaaaatctatagtggaaggaat 947
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9425976 gtgtgaaggaattacaagtccagaaggctcaaaatctatagtggaaggaat 9426026
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,355,753
Number of extensions: 147
Number of successful extensions: 147
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 9
Length of query: 947
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 926
Effective length of database: 2,808,413,156
Effective search space: 2600590582456
Effective search space used: 2600590582456
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)