Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094666.1| hypothetical protein LOC539712 [Bos taurus]. 409 e-116
Alignment gi|NP_001077263.1| family with sequence similarity 122B [Bos ta... 256 2e-68
>ref|NP_001094666.1| hypothetical protein LOC539712 [Bos taurus].
Length = 287
Score = 409 bits (1051), Expect(2) = e-116
Identities = 215/273 (78%), Positives = 216/273 (79%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLEL LRRSNSAPLIHGLSDTSPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPPGSGGSPAEGSSSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES
Sbjct: 61 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 120
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXX 673
FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV
Sbjct: 121 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
Query: 674 XXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 853
INCIRPSVLGPLKRKCEMETEYQPKRFFQGIT MLSSDVAQLSDPGVCVS
Sbjct: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITTMLSSDVAQLSDPGVCVS 240
Query: 854 SDTLDXXXXXXXXXXXXPAKVSTTTDSPVSPAK 952
SDTLD PAKVSTTTDSPVSPA+
Sbjct: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ 273
Score = 27.7 bits (60), Expect(2) = e-116
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 949 QAASPFIPVDEL 984
QAASPFIPVDEL
Sbjct: 273 QAASPFIPVDEL 284
>ref|NP_001077263.1| family with sequence similarity 122B [Bos taurus].
Length = 249
Score = 256 bits (654), Expect = 2e-68
Identities = 148/237 (62%), Positives = 156/237 (65%), Gaps = 3/237 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELD E LRRSNSAPLIHGLSD S VFQ ARR
Sbjct: 1 MAQEKMELDFE------------PDTSDGGTLRRSNSAPLIHGLSDLSQVFQPYTFRARR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH LLL SP R+ SSRLHQIK+EEGMD++NRET HEREVQ AMQIS SW+ES
Sbjct: 49 NSTTVMSRHNLLLSTSPNRIPSSRLHQIKREEGMDIMNRETAHEREVQTAMQISQSWDES 108
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GKQCFSPSLQ FV
Sbjct: 109 LSLSDSDFDKQEKLYSPKRIDFTPVSPAPSPTRGFGKQCFSPSLQMFV--SSSGLPPSPV 166
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSD 835
I CIRPSVL PLKRK EMETE QPKR FQG TNMLS + AQLSD
Sbjct: 167 PSPRRFSTRSQSPIKCIRPSVLAPLKRKGEMETESQPKRLFQGTTNMLSPEAAQLSD 223
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 35,983,540
Number of extensions: 937724
Number of successful extensions: 4450
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4369
Number of HSP's successfully gapped: 3
Length of query: 328
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,273,310
Effective search space: 3211494750
Effective search space used: 3211494750
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851373.1| PREDICTED: similar to CG4497-PA [Canis familiar... 410 e-116
Alignment gi|XP_549270.2| PREDICTED: similar to CG4497-PA [Canis familiar... 232 5e-61
Alignment gi|XP_854555.1| PREDICTED: hypothetical protein XP_849462 [Cani... 149 3e-36
>ref|XP_851373.1| PREDICTED: similar to CG4497-PA [Canis familiaris].
Length = 287
Score = 410 bits (1053), Expect(2) = e-116
Identities = 215/273 (78%), Positives = 216/273 (79%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLEL LRRSNSAPLIHGLSDTSPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPPGAGGSPAEGGGSGAGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES
Sbjct: 61 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 120
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXX 673
FSLSDND EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV
Sbjct: 121 FSLSDNDAEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
Query: 674 XXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 853
INCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS
Sbjct: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 240
Query: 854 SDTLDXXXXXXXXXXXXPAKVSTTTDSPVSPAK 952
SDTLD PAKVSTTTDSPVSPA+
Sbjct: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ 273
Score = 27.7 bits (60), Expect(2) = e-116
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 949 QAASPFIPVDEL 984
QAASPFIPVDEL
Sbjct: 273 QAASPFIPVDEL 284
>ref|XP_549270.2| PREDICTED: similar to CG4497-PA [Canis familiaris].
Length = 256
Score = 232 bits (591), Expect = 5e-61
Identities = 145/273 (53%), Positives = 156/273 (57%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELD E LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDFE------------PDTSDGGTLRRSSSAPLIHGLSDLSQVFQPYTFRTRR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH L EEGMD++NRET HEREVQ AMQIS SW+ES
Sbjct: 49 NSTTVMSRHNL-------------------EEGMDMMNRETAHEREVQTAMQISQSWDES 89
Query: 494 FSLSDNDVEKSA---SPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GKQCFSPSLQ FV
Sbjct: 90 LSLSDSDFEKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCFSPSLQMFVSSSGLPPSPVPS 149
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EMETE QPKR FQG T+MLS + AQLSD
Sbjct: 150 PRRFANKRSQSP-VKCIRPSVLGPLKRKGEMETESQPKRLFQGTTSMLSPEAAQLSDLSS 208
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD AK STT +SPV+
Sbjct: 209 C--SDILDGSSSSSGLSSDSLAKGSTTAESPVA 239
>ref|XP_854555.1| PREDICTED: hypothetical protein XP_849462 [Canis familiaris].
Length = 389
Score = 149 bits (377), Expect = 3e-36
Identities = 90/166 (54%), Positives = 102/166 (61%)
Frame = +2
Query: 131 DMAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSAR 310
DMAQEKMELDLEL LRRSNSAPLI+GL D S VFQ + + R
Sbjct: 234 DMAQEKMELDLELLPTSATTDNT---------LRRSNSAPLINGLGDNSQVFQGDTLTTR 284
Query: 311 RNSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEE 490
RNSTTF +H EEGMDLINRE +HE +VQ A+QI+ SWE
Sbjct: 285 RNSTTFMTQHC-------------------PEEGMDLINREAMHEWKVQTAIQINRSWEA 325
Query: 491 SFSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV 628
S +LSD D+EK +S K ID IPVSPA SPTRGIGKQC PSLQ+ V
Sbjct: 326 SLNLSDGDLEKPSS-KCIDLIPVSPATSPTRGIGKQCLPPSLQTCV 370
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 37,602,731
Number of extensions: 969653
Number of successful extensions: 4902
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4739
Number of HSP's successfully gapped: 4
Length of query: 328
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 225
Effective length of database: 15,440,896
Effective search space: 3474201600
Effective search space used: 3474201600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003121985.1| PREDICTED: protein FAM122A-like [Sus scrofa]. 411 e-117
>ref|XP_003121985.1| PREDICTED: protein FAM122A-like [Sus scrofa].
Length = 287
Score = 411 bits (1057), Expect(2) = e-117
Identities = 216/273 (79%), Positives = 217/273 (79%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLEL LRRSNSAPLIHGLSDTSPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES
Sbjct: 61 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 120
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXX 673
FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV
Sbjct: 121 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
Query: 674 XXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 853
INCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS
Sbjct: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 240
Query: 854 SDTLDXXXXXXXXXXXXPAKVSTTTDSPVSPAK 952
SDTLD PAKVSTTTDSPVSPA+
Sbjct: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ 273
Score = 27.7 bits (60), Expect(2) = e-117
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 949 QAASPFIPVDEL 984
QAASPFIPVDEL
Sbjct: 273 QAASPFIPVDEL 284
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,204,538
Number of extensions: 603063
Number of successful extensions: 2693
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2664
Number of HSP's successfully gapped: 2
Length of query: 328
Length of database: 11,343,932
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,879,129
Effective search space: 2033320541
Effective search space used: 2033320541
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080796.1| hypothetical protein LOC68034 [Mus musculus]. 400 e-113
Alignment gi|NP_001159837.2| family with sequence similarity 122, member ... 197 8e-51
Alignment gi|NP_084443.1| family with sequence similarity 122, member B i... 197 8e-51
Alignment gi|NP_001160055.1| family with sequence similarity 122, member ... 192 4e-49
Alignment gi|NP_082947.1| hypothetical protein LOC73866 [Mus musculus]. 106 2e-23
>ref|NP_080796.1| hypothetical protein LOC68034 [Mus musculus].
Length = 284
Score = 400 bits (1028), Expect(2) = e-113
Identities = 212/273 (77%), Positives = 216/273 (79%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLEL LRRSNSAPLIHGLSD+SPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPAGASPAEGGGPGGGG---LRRSNSAPLIHGLSDSSPVFQAEAPSARR 57
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTTFP+RHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQ AMQISHSWEES
Sbjct: 58 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 117
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXX 673
FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV
Sbjct: 118 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 177
Query: 674 XXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 853
INCIRPSVLGPLKRKCEMET+YQPKRFFQGITNMLSSDVAQLSDPGVCVS
Sbjct: 178 RFTTRRSQSPINCIRPSVLGPLKRKCEMETDYQPKRFFQGITNMLSSDVAQLSDPGVCVS 237
Query: 854 SDTLDXXXXXXXXXXXXPAKVSTTTDSPVSPAK 952
SDTLD PAKVSTTTDSPVSPA+
Sbjct: 238 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ 270
Score = 27.7 bits (60), Expect(2) = e-113
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = +1
Query: 949 QAASPFIPVDEL 984
QAASPFIPVDEL
Sbjct: 270 QAASPFIPVDEL 281
>ref|NP_001159837.2| family with sequence similarity 122, member B isoform 1 [Mus
musculus].
Length = 255
Score = 197 bits (502), Expect = 8e-51
Identities = 130/273 (47%), Positives = 145/273 (53%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKM+LD E LRRSNSAPLIH LSD S VF+ R
Sbjct: 1 MAQEKMDLDFEADTSEGAT------------LRRSNSAPLIHVLSDLSQVFEPYPLRTGR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
ST + H L EEG+D++NRET +ERE Q MQIS SW+ES
Sbjct: 49 TSTAIMSHHSL-------------------EEGLDMMNRETTNEREAQAGMQISQSWDES 89
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GKQC SPSLQ FV
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCLSPSLQMFVSSSGMPPSPVLN 149
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EME E QPKR FQG T+MLS++ AQLSD
Sbjct: 150 PRHFSRRSQSP--VKCIRPSVLGPLKRKGEMEMESQPKRPFQGTTSMLSTNPAQLSDFSS 207
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD A S +SPV+
Sbjct: 208 C--SDILDGSSISSGLSSDSLATGSAPAESPVA 238
>ref|NP_084443.1| family with sequence similarity 122, member B isoform 2 [Mus
musculus].
Length = 256
Score = 197 bits (502), Expect = 8e-51
Identities = 130/273 (47%), Positives = 145/273 (53%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKM+LD E LRRSNSAPLIH LSD S VF+ R
Sbjct: 1 MAQEKMDLDFEADTSEGAT------------LRRSNSAPLIHVLSDLSQVFEPYPLRTGR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
ST + H L EEG+D++NRET +ERE Q MQIS SW+ES
Sbjct: 49 TSTAIMSHHSL-------------------EEGLDMMNRETTNEREAQAGMQISQSWDES 89
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GKQC SPSLQ FV
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCLSPSLQMFVSSSGMPPSPVLN 149
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EME E QPKR FQG T+MLS++ AQLSD
Sbjct: 150 PRHFSSRRSQSP-VKCIRPSVLGPLKRKGEMEMESQPKRPFQGTTSMLSTNPAQLSDFSS 208
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD A S +SPV+
Sbjct: 209 C--SDILDGSSISSGLSSDSLATGSAPAESPVA 239
>ref|NP_001160055.1| family with sequence similarity 122, member B isoform 3 [Mus
musculus].
Length = 230
Score = 192 bits (487), Expect = 4e-49
Identities = 120/237 (50%), Positives = 133/237 (56%), Gaps = 3/237 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKM+LD E LRRSNSAPLIH LSD S VF+ R
Sbjct: 1 MAQEKMDLDFEADTSEGAT------------LRRSNSAPLIHVLSDLSQVFEPYPLRTGR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
ST + H L EEG+D++NRET +ERE Q MQIS SW+ES
Sbjct: 49 TSTAIMSHHSL-------------------EEGLDMMNRETTNEREAQAGMQISQSWDES 89
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GKQC SPSLQ FV
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKQCLSPSLQMFVSSSGMPPSPVLN 149
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSD 835
+ CIRPSVLGPLKRK EME E QPKR FQG T+MLS++ AQLSD
Sbjct: 150 PRHFSRRSQSP--VKCIRPSVLGPLKRKGEMEMESQPKRPFQGTTSMLSTNPAQLSD 204
>ref|NP_082947.1| hypothetical protein LOC73866 [Mus musculus].
Length = 180
Score = 106 bits (265), Expect = 2e-23
Identities = 62/148 (41%), Positives = 84/148 (56%)
Frame = +2
Query: 131 DMAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSAR 310
D+ QE ME+DL L +RRSNS P ++G D S FQ R
Sbjct: 25 DVIQETMEVDLGLVPASSSVDISY--------VRRSNSIPSVNGFGDNSQGFQVGPTRMR 76
Query: 311 RNSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEE 490
RN + F N+HGLL S R ++R+ QIKQEEGMD+ RE +HER++ AMQIS S E+
Sbjct: 77 RNGSPFLNQHGLLFLPSRSRTSANRIFQIKQEEGMDMAIREAMHERDMHTAMQISRSTEQ 136
Query: 491 SFSLSDNDVEKSASPKRIDFIPVSPAPS 574
+L+DN+ KS++ + I+ P SP S
Sbjct: 137 CLNLNDNNTVKSSTMRNINPNPFSPVAS 164
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,168,445
Number of extensions: 795619
Number of successful extensions: 3410
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3353
Number of HSP's successfully gapped: 6
Length of query: 328
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 226
Effective length of database: 12,553,887
Effective search space: 2837178462
Effective search space used: 2837178462
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_612206.3| hypothetical protein LOC116224 [Homo sapiens]. 407 e-115
Alignment gi|NP_001164227.1| family with sequence similarity 122B isoform... 247 1e-65
Alignment gi|NP_001160072.1| family with sequence similarity 122B isoform... 236 2e-62
Alignment gi|NP_001160071.1| family with sequence similarity 122B isoform... 213 3e-55
Alignment gi|NP_660327.2| family with sequence similarity 122B isoform 1 ... 213 3e-55
Alignment gi|NP_001164228.1| family with sequence similarity 122B isoform... 186 2e-47
Alignment gi|NP_620174.1| hypothetical protein LOC159091 isoform 2 [Homo ... 130 2e-30
Alignment gi|NP_001164250.1| hypothetical protein LOC159091 isoform 1 [Ho... 106 3e-23
Alignment gi|NP_001164251.1| hypothetical protein LOC159091 isoform 3 [Ho... 49 7e-06
>ref|NP_612206.3| hypothetical protein LOC116224 [Homo sapiens].
Length = 287
Score = 407 bits (1046), Expect(2) = e-115
Identities = 214/273 (78%), Positives = 216/273 (79%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLEL LRRSNSAPLIHGLSDTSPVFQAEAPSARR
Sbjct: 1 MAQEKMELDLELPPGTGGSPAEGGGSGGGGGLRRSNSAPLIHGLSDTSPVFQAEAPSARR 60
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTTFP+RHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQ AMQISHSWEES
Sbjct: 61 NSTTFPSRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQTAMQISHSWEES 120
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXX 673
FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFV
Sbjct: 121 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVSSNGLPPSPIPSPTT 180
Query: 674 XXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 853
INCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS
Sbjct: 181 RFTTRRSQSPINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGVCVS 240
Query: 854 SDTLDXXXXXXXXXXXXPAKVSTTTDSPVSPAK 952
SDTLD PAKVSTTTDSPVSPA+
Sbjct: 241 SDTLDGNSSSAGSSCNSPAKVSTTTDSPVSPAQ 273
Score = 26.6 bits (57), Expect(2) = e-115
Identities = 11/12 (91%), Positives = 12/12 (100%)
Frame = +1
Query: 949 QAASPFIPVDEL 984
QAASPFIP+DEL
Sbjct: 273 QAASPFIPLDEL 284
>ref|NP_001164227.1| family with sequence similarity 122B isoform 4 [Homo sapiens].
Length = 266
Score = 247 bits (631), Expect = 1e-65
Identities = 150/273 (54%), Positives = 164/273 (60%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLE LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLE------------PDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH LLL +SP R+ SSRLHQIK+EEG+D++NRET HERE+Q AMQIS SW+ES
Sbjct: 49 NSTTIMSRHSLLLSSSPNRIPSSRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDES 108
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GK S S
Sbjct: 109 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSS----------GLPPSPV 158
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 159 PSPRRFSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSS 218
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD AK S T +SPV+
Sbjct: 219 C--SDILDGSSSSSGLSSDPLAKGSATAESPVA 249
>ref|NP_001160072.1| family with sequence similarity 122B isoform 3 [Homo sapiens].
Length = 241
Score = 236 bits (603), Expect = 2e-62
Identities = 138/237 (58%), Positives = 150/237 (63%), Gaps = 3/237 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLE LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLE------------PDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH LLL +SP R+ SSRLHQIK+EEG+D++NRET HERE+Q AMQIS SW+ES
Sbjct: 49 NSTTIMSRHSLLLSSSPNRIPSSRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDES 108
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GK S S
Sbjct: 109 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSS----------GLPPSPV 158
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSD 835
+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 159 PSPRRFSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSD 215
>ref|NP_001160071.1| family with sequence similarity 122B isoform 2 [Homo sapiens].
Length = 247
Score = 213 bits (541), Expect = 3e-55
Identities = 137/273 (50%), Positives = 148/273 (54%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLE LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLE------------PDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH L EEG+D++NRET HERE+Q AMQIS SW+ES
Sbjct: 49 NSTTIMSRHSL-------------------EEGLDMVNRETAHEREMQTAMQISQSWDES 89
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GK S S
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSS----------GLPPSPV 139
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 140 PSPRRFSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSS 199
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD AK S T +SPV+
Sbjct: 200 C--SDILDGSSSSSGLSSDPLAKGSATAESPVA 230
>ref|NP_660327.2| family with sequence similarity 122B isoform 1 [Homo sapiens].
Length = 248
Score = 213 bits (541), Expect = 3e-55
Identities = 137/273 (50%), Positives = 148/273 (54%), Gaps = 3/273 (1%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKMELDLE LRRS+SAPLIHGLSD S VFQ RR
Sbjct: 1 MAQEKMELDLE------------PDTSYGGTLRRSSSAPLIHGLSDLSQVFQPYTLRTRR 48
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
NSTT +RH L EEG+D++NRET HERE+Q AMQIS SW+ES
Sbjct: 49 NSTTIMSRHSL-------------------EEGLDMVNRETAHEREMQTAMQISQSWDES 89
Query: 494 FSLSDNDV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXX 664
SLSD+D EK SPKRIDF PVSPAPSPTRG GK S S
Sbjct: 90 LSLSDSDFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSS---------GLPPSPVP 140
Query: 665 XXXXXXXXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSDPGV 844
+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 141 SPRRFSSRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSDLSS 200
Query: 845 CVSSDTLDXXXXXXXXXXXXPAKVSTTTDSPVS 943
C SD LD AK S T +SPV+
Sbjct: 201 C--SDILDGSSSSSGLSSDPLAKGSATAESPVA 231
>ref|NP_001164228.1| family with sequence similarity 122B isoform 5 [Homo sapiens].
Length = 189
Score = 186 bits (473), Expect = 2e-47
Identities = 103/171 (60%), Positives = 114/171 (66%), Gaps = 3/171 (1%)
Frame = +2
Query: 332 NRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEESFSLSDN 511
+RH LLL +SP R+ SSRLHQIK+EEG+D++NRET HERE+Q AMQIS SW+ES SLSD+
Sbjct: 2 SRHSLLLSSSPNRIPSSRLHQIKREEGLDMVNRETAHEREMQTAMQISQSWDESLSLSDS 61
Query: 512 DV---EKSASPKRIDFIPVSPAPSPTRGIGKQCFSPSLQSFVXXXXXXXXXXXXXXXXXX 682
D EK SPKRIDF PVSPAPSPTRG GK S S
Sbjct: 62 DFDKPEKLYSPKRIDFTPVSPAPSPTRGFGKMFVSSS---------GLPPSPVPSPRRFS 112
Query: 683 XXXXXXXINCIRPSVLGPLKRKCEMETEYQPKRFFQGITNMLSSDVAQLSD 835
+ CIRPSVLGPLKRK EMETE QPKR FQG TNMLS D AQLSD
Sbjct: 113 SRRSQSPVKCIRPSVLGPLKRKGEMETESQPKRLFQGTTNMLSPDAAQLSD 163
>ref|NP_620174.1| hypothetical protein LOC159091 isoform 2 [Homo sapiens].
Length = 152
Score = 130 bits (327), Expect = 2e-30
Identities = 78/158 (49%), Positives = 92/158 (58%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKM+L + LRR NSAPLI+GL S V QA+ R
Sbjct: 1 MAQEKMKLGFK--------SLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRIRT 52
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
N TTF NR LLLP P SRLHQIKQEE MDLINRET+ E ++Q+ +QISHSWEE
Sbjct: 53 NRTTFRNRRSLLLPPPPFHGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEG 112
Query: 494 FSLSDNDVEKSASPKRIDFIPVSPAPSPTRGIGKQCFS 607
L+DN ++KS+S K ID PVS S + GK S
Sbjct: 113 LKLNDNGLQKSSSLKCIDLTPVSSMASSIKKTGKSTSS 150
>ref|NP_001164250.1| hypothetical protein LOC159091 isoform 1 [Homo sapiens].
Length = 195
Score = 106 bits (265), Expect = 3e-23
Identities = 63/123 (51%), Positives = 72/123 (58%)
Frame = +2
Query: 134 MAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSARR 313
MAQEKM+L + LRR NSAPLI+GL S V QA+ R
Sbjct: 1 MAQEKMKLGFK--------SLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRIRT 52
Query: 314 NSTTFPNRHGLLLPASPVRMHSSRLHQIKQEEGMDLINRETVHEREVQNAMQISHSWEES 493
N TTF NR LLLP P SRLHQIKQEE MDLINRET+ E ++Q+ +QISHSWEE
Sbjct: 53 NRTTFRNRRSLLLPPPPFHGSISRLHQIKQEEAMDLINRETMSEWKLQSEIQISHSWEEG 112
Query: 494 FSL 502
L
Sbjct: 113 LKL 115
Score = 80.1 bits (196), Expect = 3e-15
Identities = 43/78 (55%), Positives = 52/78 (66%)
Frame = +3
Query: 750 VKWKLNISQRDFSRASPTCFLLTLHNCQILVCVYLPIPLMETAAVPDLLVTHQPKSALPP 929
VKW NI+Q+ FS+A PTCFLL L NCQ ++C+Y + LMET A+ DLLV Q KSAL
Sbjct: 116 VKWHFNINQKRFSKAQPTCFLLILPNCQKIMCIYFQLLLMETTAMLDLLVIRQLKSALSQ 175
Query: 930 TLLYRLPSGLSFYSSR*T 983
TLL L + SSR T
Sbjct: 176 TLLCHLLILVLICSSRQT 193
>ref|NP_001164251.1| hypothetical protein LOC159091 isoform 3 [Homo sapiens].
Length = 115
Score = 48.9 bits (115), Expect = 7e-06
Identities = 32/73 (43%), Positives = 36/73 (49%)
Frame = +2
Query: 128 PDMAQEKMELDLELXXXXXXXXXXXXXXXXXXXLRRSNSAPLIHGLSDTSPVFQAEAPSA 307
PDMAQEKM+L + LRR NSAPLI+GL S V QA+
Sbjct: 35 PDMAQEKMKLGFK--------SLPSSTTADGNILRRVNSAPLINGLGFNSQVLQADMLRI 86
Query: 308 RRNSTTFPNRHGL 346
R N TTF NR L
Sbjct: 87 RTNRTTFRNRRSL 99
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 36,882,923
Number of extensions: 954609
Number of successful extensions: 4453
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4397
Number of HSP's successfully gapped: 16
Length of query: 328
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 225
Effective length of database: 14,901,872
Effective search space: 3352921200
Effective search space used: 3352921200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008710
(985 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 1899 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 1899 bits (958), Expect = 0.0
Identities = 977/982 (99%), Gaps = 1/982 (0%)
Strand = Plus / Minus
Query: 5 acgcatgcgcaaggcacgagcccgctgacagattcgcggtggcggtggtggcggcggcgg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524785 acgcatgcgcaaggcacgagcccgctgacagattcgcggtggcggtggtggcggcggcgg 248524726
Query: 65 ccctgtattgcggggaatgggaatcctaggtctctgactgagcaccgcccccgcctccct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524725 ccctgtattgcggggaatgggaatcctaggtctctgactgagcaccgcccccgcctccct 248524666
Query: 125 gcccccgacatggctcaggagaagatggagctagacctggagctgcctccgggcacgggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524665 gcccccgacatggctcaggagaagatggagctagacctggagctgcctccgggcacgggt 248524606
Query: 185 gggagcccggcggagggcggcggcagtggtggcggcgggggcctcaggaggtctaacagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524605 gggagcccggcggagggcggcggcagtggtggcggcgggggcctcaggaggtctaacagc 248524546
Query: 245 gcccccctcatccacggcctcagtgacacttcgccggtgttccaggccgaggcgccgagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524545 gcccccctcatccacggcctcagtgacacttcgccggtgttccaggccgaggcgccgagc 248524486
Query: 305 gccaggcggaacagcacaacgttcccgaaccgccacggcctgctgctaccagcctccccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524485 gccaggcggaacagcacaacgttcccgaaccgccacggcctgctgctaccagcctccccc 248524426
Query: 365 gtccgtatgcacagcagccgcttgcaccagatcaaacaagaggagggcatggacttgatc 424
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524425 gtccgcatgcacagcagccgcttgcaccagatcaaacaagaggagggcatggacttgatc 248524366
Query: 425 aaccgagagacggtccacgagcgcgaggtgcagaacgcaatgcagataagccactcctgg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524365 aaccgagagacggtccacgagcgcgaggtgcagaacgcaatgcagataagccactcctgg 248524306
Query: 485 gaggaaagtttcagcctgagtgacaacgacgtggagaaatccgcctccccgaaacgcatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524305 gaggaaagtttcagcctgagtgacaacgacgtggagaaatccgcctccccgaaacgcatt 248524246
Query: 545 gatttcattccagtgtcaccagcaccgtcacccacccggggaattggaaagcagtgtttt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524245 gatttcattccagtgtcaccagcaccgtcacccacccggggaattggaaagcagtgtttt 248524186
Query: 605 tcaccgtctttgcaaagttttgtgagtagcaatggattgcctccaagtcctattcccagc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524185 tcaccgtctttgcaaagttttgtgagtagcaatggattgcctccaagtcctattcccagc 248524126
Query: 665 ccaacgacccgatttactacccgcagaagccagagtcccattaattgcattagaccaagt 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524125 ccaacgacccgatttactacccgcagaagccagagtcccattaattgcattagaccaagt 248524066
Query: 725 gttcttggaccattgaaaagaaaatgtgaaatggaaactgaatatcagccaaagagattt 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524065 gttcttggaccattgaaaagaaaatgtgaaatggaaactgaatatcagccaaagagattt 248524006
Query: 785 ttccagggcatcaccaacatgctttcttctgacgttgcacaactgtcagatcctggtgtg 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248524005 ttccagggcatcaccaacatgctttcttctgacgttgcacaactgtcagatcctggtgtg 248523946
Query: 845 tgtgtatcttccgatacccttgatggaaacagcagcagtgccggatcttcttgtaactca 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248523945 tgtgtatcttccgatacccttgatggaaacagcagcagtgccggatcttcttgtaactca 248523886
Query: 905 ccagccaaagtcagcactaccaccgactctcctgtatcgcctg-ccaagcggcctctcct 963
||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 248523885 ccagcgaaagtcagcactaccaccgactctcctgtatcgcctgcccaagcggcgtctcca 248523826
Query: 964 tttattccagtagatgaacttt 985
||||||||||||||||||||||
Sbjct: 248523825 tttattccagtagatgaacttt 248523804
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,989,757
Number of extensions: 434
Number of successful extensions: 434
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 433
Number of HSP's successfully gapped: 1
Length of query: 985
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 964
Effective length of database: 2,808,413,156
Effective search space: 2707310282384
Effective search space used: 2707310282384
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)