Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073102.1| protein S100-A14 [Bos taurus]. 202 6e-52
Alignment gi|XP_002700389.1| PREDICTED: S100 calcium binding protein A14-... 166 5e-41
Alignment gi|XP_001252240.1| PREDICTED: S100 calcium binding protein A14 ... 166 5e-41
Alignment gi|XP_002703901.1| PREDICTED: S100 calcium binding protein A13-... 74 3e-13
Alignment gi|XP_002703900.1| PREDICTED: S100 calcium binding protein A13-... 74 3e-13
Alignment gi|NP_991369.1| protein S100-A13 [Bos taurus]. 72 8e-13
>ref|NP_001073102.1| protein S100-A14 [Bos taurus].
Length = 104
Score = 202 bits (513), Expect = 6e-52
Identities = 99/104 (95%), Positives = 102/104 (98%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAEDAQE SDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDAQELSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEKIANLG+CNDSKLEFGSFWELIGEAAKSVKLE+ V+GS
Sbjct: 61 NCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKLENAVQGS 104
>ref|XP_002700389.1| PREDICTED: S100 calcium binding protein A14-like [Bos taurus].
Length = 104
Score = 166 bits (419), Expect = 5e-41
Identities = 81/104 (77%), Positives = 91/104 (87%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
M QC SAN+EDAQEF DVER ETL K+FHQ+ VEGGKE+L PS+LR L+TQQLPHLM S
Sbjct: 1 MRQCWSANSEDAQEFRDVERTSETLTKDFHQHLVEGGKESLNPSKLRGLITQQLPHLMLS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEK ANLG+CN+SKLEFGSFWEL GEAAKSVKLE+ V+GS
Sbjct: 61 NCGLEEKTANLGNCNNSKLEFGSFWELFGEAAKSVKLENTVQGS 104
>ref|XP_001252240.1| PREDICTED: S100 calcium binding protein A14 [Bos taurus].
Length = 104
Score = 166 bits (419), Expect = 5e-41
Identities = 81/104 (77%), Positives = 91/104 (87%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
M QC SAN+EDAQEF DVER ETL K+FHQ+ VEGGKE+L PS+LR L+TQQLPHLM S
Sbjct: 1 MRQCWSANSEDAQEFRDVERTSETLTKDFHQHLVEGGKESLNPSKLRGLITQQLPHLMLS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEK ANLG+CN+SKLEFGSFWEL GEAAKSVKLE+ V+GS
Sbjct: 61 NCGLEEKTANLGNCNNSKLEFGSFWELFGEAAKSVKLENTVQGS 104
>ref|XP_002703901.1| PREDICTED: S100 calcium binding protein A13-like isoform 2 [Bos
taurus].
Length = 98
Score = 73.9 bits (180), Expect = 3e-13
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYSV-EGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E AIET++ F ++ EG K +L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEAAIETVVTTFFTFAGREGRKGSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLE 601
L DS+L+F +W LIGE AK ++ E
Sbjct: 63 LDVNQDSELKFSEYWRLIGELAKEIRKE 90
>ref|XP_002703900.1| PREDICTED: S100 calcium binding protein A13-like isoform 1 [Bos
taurus].
Length = 98
Score = 73.9 bits (180), Expect = 3e-13
Identities = 37/88 (42%), Positives = 59/88 (67%), Gaps = 1/88 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYSV-EGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E AIET++ F ++ EG K +L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEAAIETVVTTFFTFAGREGRKGSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLE 601
L DS+L+F +W LIGE AK ++ E
Sbjct: 63 LDVNQDSELKFSEYWRLIGELAKEIRKE 90
>ref|NP_991369.1| protein S100-A13 [Bos taurus].
Length = 98
Score = 72.4 bits (176), Expect = 8e-13
Identities = 36/88 (40%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYSV-EGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E AIET++ F ++ EG K +L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEAAIETVVTTFFTFAGREGRKGSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLE 601
DS+L+F +W LIGE AK ++ E
Sbjct: 63 FDVNQDSELKFSEYWRLIGELAKEIRKE 90
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 43,727,605
Number of extensions: 1319661
Number of successful extensions: 7036
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6926
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 298
Effective length of database: 14,240,222
Effective search space: 4243586156
Effective search space used: 4243586156
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855157.1| PREDICTED: similar to S100 calcium binding prot... 189 5e-48
Alignment gi|XP_547579.2| PREDICTED: similar to S100 calcium-binding prot... 73 5e-13
>ref|XP_855157.1| PREDICTED: similar to S100 calcium binding protein A14 [Canis
familiaris].
Length = 104
Score = 189 bits (480), Expect = 5e-48
Identities = 93/104 (89%), Positives = 99/104 (95%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAED Q+FS+VERAIETLI++FHQYSVEGGKETLTPSEL+ LVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDTQDFSEVERAIETLIRSFHQYSVEGGKETLTPSELQALVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
N GLEEKIANLGSC DSKLEFGSFWELIGEAA+SVKLESPVR S
Sbjct: 61 NYGLEEKIANLGSCTDSKLEFGSFWELIGEAARSVKLESPVRSS 104
>ref|XP_547579.2| PREDICTED: similar to S100 calcium-binding protein A13 [Canis
familiaris].
Length = 98
Score = 73.2 bits (178), Expect = 5e-13
Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E AIET++ F ++ EG K +L+ E R+LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEAAIETVVTTFFTFAGQEGRKGSLSIHEFRELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLE 601
L DS+L+F +W LIGE AK ++ E
Sbjct: 63 LDVNQDSELKFHEYWRLIGELAKEIQKE 90
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 45,770,166
Number of extensions: 1368806
Number of successful extensions: 6918
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6860
Number of HSP's successfully gapped: 2
Length of query: 402
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 297
Effective length of database: 15,374,224
Effective search space: 4566144528
Effective search space used: 4566144528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001177097.1| S100 calcium binding protein A14 [Sus scrofa]. 211 7e-55
>ref|NP_001177097.1| S100 calcium binding protein A14 [Sus scrofa].
Length = 104
Score = 211 bits (537), Expect = 7e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS
Sbjct: 61 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 104
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 28,308,172
Number of extensions: 857127
Number of successful extensions: 4575
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 4501
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,829,335
Effective search space: 2657629835
Effective search space used: 2657629835
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001156997.1| protein S100-A14 isoform a [Mus musculus]. 194 2e-49
Alignment gi|NP_079669.2| protein S100-A14 isoform a [Mus musculus]. 194 2e-49
Alignment gi|NP_001156998.1| protein S100-A14 isoform b [Mus musculus]. 85 1e-16
Alignment gi|NP_033139.1| protein S100-A13 [Mus musculus]. 72 1e-12
>ref|NP_001156997.1| protein S100-A14 isoform a [Mus musculus].
Length = 104
Score = 194 bits (492), Expect = 2e-49
Identities = 95/104 (91%), Positives = 99/104 (95%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAEDAQEFSDVERAIETLIKNFH+YSV G KETLTP+ELRDLVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDAQEFSDVERAIETLIKNFHKYSVAGKKETLTPAELRDLVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEKIANLG+CNDSKLEFGSFWELIGEAAKSVK+E PV S
Sbjct: 61 NCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKMERPVTRS 104
>ref|NP_079669.2| protein S100-A14 isoform a [Mus musculus].
Length = 104
Score = 194 bits (492), Expect = 2e-49
Identities = 95/104 (91%), Positives = 99/104 (95%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAEDAQEFSDVERAIETLIKNFH+YSV G KETLTP+ELRDLVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDAQEFSDVERAIETLIKNFHKYSVAGKKETLTPAELRDLVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
NCGLEEKIANLG+CNDSKLEFGSFWELIGEAAKSVK+E PV S
Sbjct: 61 NCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKMERPVTRS 104
>ref|NP_001156998.1| protein S100-A14 isoform b [Mus musculus].
Length = 55
Score = 85.1 bits (209), Expect = 1e-16
Identities = 40/45 (88%), Positives = 42/45 (93%)
Frame = +2
Query: 485 SNCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRGS 619
SNCGLEEKIANLG+CNDSKLEFGSFWELIGEAAKSVK+E PV S
Sbjct: 11 SNCGLEEKIANLGNCNDSKLEFGSFWELIGEAAKSVKMERPVTRS 55
>ref|NP_033139.1| protein S100-A13 [Mus musculus].
Length = 98
Score = 71.6 bits (174), Expect = 1e-12
Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYSV-EGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E AIET++ F ++ EG K +L +E ++L TQQLPHL+ L+EK+
Sbjct: 3 AETLTELEAAIETVVSTFFTFAGREGRKGSLNINEFKELATQQLPHLLKDVGSLDEKMKT 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLE 601
L DS+L F +W LIGE AK V+ E
Sbjct: 63 LDVNQDSELRFSEYWRLIGELAKEVRKE 90
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 37,527,311
Number of extensions: 1083498
Number of successful extensions: 5735
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5650
Number of HSP's successfully gapped: 4
Length of query: 402
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 298
Effective length of database: 12,493,815
Effective search space: 3723156870
Effective search space used: 3723156870
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065723.1| protein S100-A14 [Homo sapiens]. 204 1e-52
Alignment gi|NP_001019384.1| protein S100-A13 [Homo sapiens]. 74 2e-13
Alignment gi|NP_001019383.1| protein S100-A13 [Homo sapiens]. 74 2e-13
Alignment gi|NP_001019382.1| protein S100-A13 [Homo sapiens]. 74 2e-13
Alignment gi|NP_001019381.1| protein S100-A13 [Homo sapiens]. 74 2e-13
Alignment gi|NP_005970.1| protein S100-A13 [Homo sapiens]. 74 2e-13
>ref|NP_065723.1| protein S100-A14 [Homo sapiens].
Length = 104
Score = 204 bits (520), Expect = 1e-52
Identities = 101/103 (98%), Positives = 101/103 (98%)
Frame = +2
Query: 308 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 487
MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS
Sbjct: 1 MGQCRSANAEDAQEFSDVERAIETLIKNFHQYSVEGGKETLTPSELRDLVTQQLPHLMPS 60
Query: 488 NCGLEEKIANLGSCNDSKLEFGSFWELIGEAAKSVKLESPVRG 616
NCGLEEKIANLGSCNDSKLEF SFWELIGEAAKSVKLE PVRG
Sbjct: 61 NCGLEEKIANLGSCNDSKLEFRSFWELIGEAAKSVKLERPVRG 103
>ref|NP_001019384.1| protein S100-A13 [Homo sapiens].
Length = 98
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E +IET++ F ++ EG K++L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLESPVR 613
L DS+L+F +W LIGE AK ++ + ++
Sbjct: 63 LDVNQDSELKFNEYWRLIGELAKEIRKKKDLK 94
>ref|NP_001019383.1| protein S100-A13 [Homo sapiens].
Length = 98
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E +IET++ F ++ EG K++L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLESPVR 613
L DS+L+F +W LIGE AK ++ + ++
Sbjct: 63 LDVNQDSELKFNEYWRLIGELAKEIRKKKDLK 94
>ref|NP_001019382.1| protein S100-A13 [Homo sapiens].
Length = 98
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E +IET++ F ++ EG K++L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLESPVR 613
L DS+L+F +W LIGE AK ++ + ++
Sbjct: 63 LDVNQDSELKFNEYWRLIGELAKEIRKKKDLK 94
>ref|NP_001019381.1| protein S100-A13 [Homo sapiens].
Length = 98
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E +IET++ F ++ EG K++L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLESPVR 613
L DS+L+F +W LIGE AK ++ + ++
Sbjct: 63 LDVNQDSELKFNEYWRLIGELAKEIRKKKDLK 94
>ref|NP_005970.1| protein S100-A13 [Homo sapiens].
Length = 98
Score = 74.3 bits (181), Expect = 2e-13
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Frame = +2
Query: 341 AQEFSDVERAIETLIKNFHQYS-VEGGKETLTPSELRDLVTQQLPHLMPSNCGLEEKIAN 517
A+ +++E +IET++ F ++ EG K++L+ +E ++LVTQQLPHL+ L+EK+ +
Sbjct: 3 AEPLTELEESIETVVTTFFTFARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKS 62
Query: 518 LGSCNDSKLEFGSFWELIGEAAKSVKLESPVR 613
L DS+L+F +W LIGE AK ++ + ++
Sbjct: 63 LDVNQDSELKFNEYWRLIGELAKEIRKKKDLK 94
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 44,705,328
Number of extensions: 1326288
Number of successful extensions: 6942
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6843
Number of HSP's successfully gapped: 6
Length of query: 402
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 297
Effective length of database: 14,835,944
Effective search space: 4406275368
Effective search space used: 4406275368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008712
(1207 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr04 1366 0.0
Sscrofa_Chr07 410 e-112
>Sscrofa_Chr04
|| Length = 143465943
Score = 1366 bits (689), Expect = 0.0
Identities = 718/726 (98%), Gaps = 3/726 (0%)
Strand = Plus / Minus
Query: 484 gagcaactgcgggctggaagagaagattgccaacctgggcagctgtaacgactctaaact 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104970175 gagcaactgcgggctggaagagaagattgccaacctgggcagctgtaacgactctaaact 104970116
Query: 544 ggagtttgggagcttctgggagctgatcggagaagcagccaagagcgtgaagctggagag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104970115 ggagtttgggagcttctgggagctgatcggagaagcagccaagagcgtgaagctggagag 104970056
Query: 604 tcctgtccggggaagctgaacctctttcctggaattttggggggatgttggggaaagggg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104970055 tcctgtccggggaagctgaacctctttcctggaattttggggggatgttggggaaagggg 104969996
Query: 664 accttagagcctgtgggcccagaaataaaactcctctctcccccacccctccgtgcttgc 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969995 accttagagcctgtgggcccagaaataaaactcctctctcccccacccctccgtgcttgc 104969936
Query: 724 ccagccctcctgcctcacccctgcagggctcaggttcagaatggcacttcccggggcctc 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969935 ccagccctcctgcctcacccctgcagggctcaggttcagaatggcacttcccggggcctc 104969876
Query: 784 ctctgtgcactttgtccctgggagttccatggagctcatagatccaggagttccccacca 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969875 ctctgtgcactttgtccctgggagttccatggagctcatagatccaggagttccccacca 104969816
Query: 844 gagggaggctcagggggcgggttggggccagggagggacgtggagggatgctcgagggtt 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969815 gagggaggctcagggggcgggttggggccagggagggacgtggagggatgctcgagggtt 104969756
Query: 904 gaggatggtgtaagggccaagtctcttagtagtgggggaagggcgagaggagcggagcca 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969755 gaggatggtgtaagggccaagtctcttagtagtgggggaagggcgagaggagcggagcca 104969696
Query: 964 cgggaaatgattggaagtgggtgggaatagggctggatattcggtactaatgagggtctc 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969695 cgggaaatgattggaagtgggtgggaatagggctggatattcggtactaatgagggtctc 104969636
Query: 1024 ttaagaacctacctctcctcatctcttccccgacccaaactggagctgtctgtcggcgct 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104969635 ttaagaacctacctctcctcatctcttccccgacccaaactggagctgtctgtcggcgct 104969576
Query: 1084 gtccctcctgggctccagctctgccccagcctctgccggggcctctgtcctggctcanca 1143
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 104969575 gtccctcctggcctccagctctgccccagcctctgccggggcctctgtcctggctcagca 104969516
Query: 1144 caggggaagagggctagcagggtcagggnagag--ccaagagggtgacttttgggagtga 1201
|||||||||||||||||||||||| ||| |||| | | |||||||||||||||||||||
Sbjct: 104969515 caggggaagagggctagcagggtc-ggggagaggccgaggagggtgacttttgggagtga 104969457
Query: 1202 gaggac 1207
||||||
Sbjct: 104969456 gaggac 104969451
Score = 295 bits (149), Expect = 3e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 336 aggatgcccaggaattcagtgacgtggagagggccattgagaccctgatcaagaacttcc 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104970546 aggatgcccaggaattcagtgacgtggagagggccattgagaccctgatcaagaacttcc 104970487
Query: 396 accagtattcggtggagggtgggaaggagacgctgaccccctccgagctacgggacctgg 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104970486 accagtattcggtggagggtgggaaggagacgctgaccccctccgagctacgggacctgg 104970427
Query: 456 tcacccagcagctgccccacctcatgccg 484
|||||||||||||||||||||||||||||
Sbjct: 104970426 tcacccagcagctgccccacctcatgccg 104970398
Score = 210 bits (106), Expect = 1e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 233 agcagatcatgagccatcagctgctccggctgtaggacgacaaaactcaccaaaggacca 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104971095 agcagatcatgagccatcagctgctccggctgtaggacgacaaaactcaccaaaggacca 104971036
Query: 293 agcgcatcgagcagcatgggacagtgtcggtcagccaacgcggagg 338
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104971035 agcgcatcgagcagcatgggacagtgtcggtcagccaacgcggagg 104970990
>Sscrofa_Chr07
|| Length = 134764511
Score = 410 bits (207), Expect = e-112
Identities = 207/207 (100%)
Strand = Plus / Plus
Query: 1 gtactccaaccgcatctgcagcgagcagctaagctgagacagaaccggcagcggcgcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104293672 gtactccaaccgcatctgcagcgagcagctaagctgagacagaaccggcagcggcgcagc 104293731
Query: 61 gagcgagcagcgaccgcgctcttacccagctcagccccgcagctcctacctgtctccgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104293732 gagcgagcagcgaccgcgctcttacccagctcagccccgcagctcctacctgtctccgcc 104293791
Query: 121 cctcagcccctcgcccggctttgactacctgcgatcatgatgttctccggcttcaacgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104293792 cctcagcccctcgcccggctttgactacctgcgatcatgatgttctccggcttcaacgcc 104293851
Query: 181 gactacgaggcgtcatcatcccgctgc 207
|||||||||||||||||||||||||||
Sbjct: 104293852 gactacgaggcgtcatcatcccgctgc 104293878
Score = 131 bits (66), Expect = 1e-27
Identities = 78/82 (95%)
Strand = Plus / Minus
Query: 125 agcccctcgcccggctttgactacctgcgatcatgatgttctccggcttcaacgccgact 184
|||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 21127194 agcccctcgctcggatttgactacgtgcgatcatgatgttctccggcttcaacgccgact 21127135
Query: 185 acgaggcgtcatcatcccgctg 206
|||||||||||| |||||||||
Sbjct: 21127134 acgaggcgtcatgatcccgctg 21127113
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,684,701
Number of extensions: 309
Number of successful extensions: 309
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 5
Length of query: 1207
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1186
Effective length of database: 2,808,413,156
Effective search space: 3330778003016
Effective search space used: 3330778003016
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)