Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001096741.1| splicing factor 3B subunit 2 [Bos taurus]. 746 0.0
>ref|NP_001096741.1| splicing factor 3B subunit 2 [Bos taurus].
Length = 896
Score = 746 bits (1926), Expect = 0.0
Identities = 370/432 (85%), Positives = 370/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 465 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 524
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVR KMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 525 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRHKMGKIDIDYQKLHDAFFKWQTKPK 584
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 585 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 644
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 645 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 704
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 705 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 764
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 765 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 824
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 825 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 884
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 885 RGGSKKYKEFKF 896
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 54,500,107
Number of extensions: 1563891
Number of successful extensions: 7574
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7533
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 387
Effective length of database: 14,174,046
Effective search space: 5485355802
Effective search space used: 5485355802
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866108.1| PREDICTED: similar to Splicing factor 3B subuni... 749 0.0
Alignment gi|XP_866094.1| PREDICTED: similar to Splicing factor 3B subuni... 749 0.0
Alignment gi|XP_866003.1| PREDICTED: similar to Splicing factor 3B subuni... 749 0.0
Alignment gi|XP_533224.2| PREDICTED: similar to Splicing factor 3B subuni... 749 0.0
Alignment gi|XP_866077.1| PREDICTED: similar to Splicing factor 3B subuni... 729 0.0
Alignment gi|XP_866047.1| PREDICTED: similar to Splicing factor 3B subuni... 412 e-115
Alignment gi|XP_866059.1| PREDICTED: similar to Splicing factor 3B subuni... 242 8e-64
Alignment gi|XP_866034.1| PREDICTED: similar to Splicing factor 3B subuni... 196 6e-50
>ref|XP_866108.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 9 [Canis
familiaris].
Length = 878
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 447 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 506
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 507 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 566
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 567 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 626
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 627 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 686
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 687 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 746
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 747 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 806
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 807 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 866
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 867 RGGSKKYKEFKF 878
>ref|XP_866094.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 8 [Canis
familiaris].
Length = 804
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 373 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 432
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 433 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 492
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 493 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 552
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 553 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 612
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 613 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 672
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 673 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 732
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 733 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 792
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 793 RGGSKKYKEFKF 804
>ref|XP_866003.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 2 [Canis
familiaris].
Length = 694
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 263 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 322
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 323 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 382
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 383 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 442
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 443 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 502
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 503 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 562
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 563 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 622
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 623 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 682
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 683 RGGSKKYKEFKF 694
>ref|XP_533224.2| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 1 [Canis
familiaris].
Length = 895
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 704 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 763
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 764 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 823
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 824 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 883
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 884 RGGSKKYKEFKF 895
>ref|XP_866077.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 7 [Canis
familiaris].
Length = 901
Score = 729 bits (1882), Expect = 0.0
Identities = 365/438 (83%), Positives = 366/438 (83%), Gaps = 6/438 (1%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 704 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 763
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKG------P 1064
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTV + G
Sbjct: 764 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVSTFGGWERGRKQ 823
Query: 1065 APELQGXXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXX 1244
PELQG DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH
Sbjct: 824 TPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRK 883
Query: 1245 XXPQDSRGGSKKYKEFKF 1298
PQDSRGGSKKYKEFKF
Sbjct: 884 AQPQDSRGGSKKYKEFKF 901
>ref|XP_866047.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 5 [Canis
familiaris].
Length = 680
Score = 412 bits (1060), Expect = e-115
Identities = 197/197 (100%), Positives = 197/197 (100%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 543 SYPNLKIPGLNSPIPES 593
SYPNLKIPGLNSPIPES
Sbjct: 644 SYPNLKIPGLNSPIPES 660
>ref|XP_866059.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 6 [Canis
familiaris].
Length = 713
Score = 242 bits (617), Expect = 8e-64
Identities = 125/161 (77%), Positives = 125/161 (77%)
Frame = +3
Query: 816 TGFITPADSGLITPGGFSSVPAGMETPXXXXXXXXXXXXAMDGSETPQLFTVLPEKRTAT 995
TGFITPADSGLITPGGFSSVPAGMETP AMDGSETPQLFTVLPEKRTAT
Sbjct: 553 TGFITPADSGLITPGGFSSVPAGMETPELIELRKKKIEEAMDGSETPQLFTVLPEKRTAT 612
Query: 996 VGGAMMGSTHIYDMSTVMSRKGPAPELQGXXXXXXXXXXXXDPMAMTQKYEEHVREQQAQ 1175
VGGAMMGSTHIYDMSTVMSRKGPAPELQG DPMAMTQKYEEHVREQQAQ
Sbjct: 613 VGGAMMGSTHIYDMSTVMSRKGPAPELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQ 672
Query: 1176 VEKEDFSDMVAEHXXXXXXXXXXXXPQDSRGGSKKYKEFKF 1298
VEKEDFSDMVAEH PQDSRGGSKKYKEFKF
Sbjct: 673 VEKEDFSDMVAEHAAKQKQKKRKAQPQDSRGGSKKYKEFKF 713
Score = 169 bits (429), Expect = 5e-42
Identities = 81/84 (96%), Positives = 82/84 (97%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQK 254
LPDFIKRTGIQEMREALQEKE +
Sbjct: 524 LPDFIKRTGIQEMREALQEKESDE 547
>ref|XP_866034.1| PREDICTED: similar to Splicing factor 3B subunit 2 (Spliceosome
associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA
splicing factor SF3b 145 kDa subunit) isoform 4 [Canis
familiaris].
Length = 138
Score = 196 bits (497), Expect = 6e-50
Identities = 102/138 (73%), Positives = 102/138 (73%)
Frame = +3
Query: 885 METPXXXXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGP 1064
METP AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGP
Sbjct: 1 METPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGP 60
Query: 1065 APELQGXXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXX 1244
APELQG DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH
Sbjct: 61 APELQGVEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRK 120
Query: 1245 XXPQDSRGGSKKYKEFKF 1298
PQDSRGGSKKYKEFKF
Sbjct: 121 AQPQDSRGGSKKYKEFKF 138
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 56,907,910
Number of extensions: 1621915
Number of successful extensions: 8083
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 8049
Number of HSP's successfully gapped: 9
Length of query: 493
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 386
Effective length of database: 15,307,552
Effective search space: 5908715072
Effective search space used: 5908715072
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122553.1| PREDICTED: splicing factor 3B subunit 2 [Sus... 749 0.0
>ref|XP_003122553.1| PREDICTED: splicing factor 3B subunit 2 [Sus scrofa].
Length = 895
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 704 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 763
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 764 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 823
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 824 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 883
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 884 RGGSKKYKEFKF 895
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 35,228,479
Number of extensions: 1011701
Number of successful extensions: 5033
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5012
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 390
Effective length of database: 8,779,541
Effective search space: 3424020990
Effective search space used: 3424020990
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_084385.2| splicing factor 3b, subunit 2 [Mus musculus]. 749 0.0
>ref|NP_084385.2| splicing factor 3b, subunit 2 [Mus musculus].
Length = 878
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 447 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 506
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 507 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 566
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 567 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 626
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 627 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 686
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 687 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 746
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 747 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 806
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 807 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 866
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 867 RGGSKKYKEFKF 878
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 46,809,457
Number of extensions: 1295944
Number of successful extensions: 6007
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5970
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 388
Effective length of database: 12,463,779
Effective search space: 4835946252
Effective search space used: 4835946252
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006833.2| splicing factor 3B subunit 2 [Homo sapiens]. 749 0.0
>ref|NP_006833.2| splicing factor 3B subunit 2 [Homo sapiens].
Length = 895
Score = 749 bits (1935), Expect = 0.0
Identities = 371/432 (85%), Positives = 371/432 (85%)
Frame = +3
Query: 3 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 182
ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523
Query: 183 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 362
LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583
Query: 363 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 542
LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643
Query: 543 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 722
SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703
Query: 723 DRTPWGXXXXXXXXXXXXXXXXXXXXXXXXXTGFITPADSGLITPGGFSSVPAGMETPXX 902
DRTPWG TGFITPADSGLITPGGFSSVPAGMETP
Sbjct: 704 DRTPWGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPEL 763
Query: 903 XXXXXXXXXXAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 1082
AMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG
Sbjct: 764 IELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPELQG 823
Query: 1083 XXXXXXXXXXXXDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHXXXXXXXXXXXXPQDS 1262
DPMAMTQKYEEHVREQQAQVEKEDFSDMVAEH PQDS
Sbjct: 824 VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQKKRKAQPQDS 883
Query: 1263 RGGSKKYKEFKF 1298
RGGSKKYKEFKF
Sbjct: 884 RGGSKKYKEFKF 895
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 55,639,126
Number of extensions: 1572921
Number of successful extensions: 7926
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7875
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 386
Effective length of database: 14,770,016
Effective search space: 5701226176
Effective search space used: 5701226176
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008722
(1480 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr02 486 e-134
Sscrofa_Chr04 76 6e-11
>Sscrofa_Chr02
|| Length = 162569375
Score = 486 bits (245), Expect = e-134
Identities = 245/245 (100%)
Strand = Plus / Minus
Query: 1228 agcaaaagaaacggaaagctcagccccaggacagccgtgggggcagcaagaaatataagg 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351313 agcaaaagaaacggaaagctcagccccaggacagccgtgggggcagcaagaaatataagg 5351254
Query: 1288 agttcaaattttaggtcccctcacacgcccggccctcctttaggccctttgccggacacc 1347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351253 agttcaaattttaggtcccctcacacgcccggccctcctttaggccctttgccggacacc 5351194
Query: 1348 tgggcttcgcacatggatacccaagagccagctctcctgttactccccagggcttgtcct 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351193 tgggcttcgcacatggatacccaagagccagctctcctgttactccccagggcttgtcct 5351134
Query: 1408 ttcaggttcatgttcttattttagacctgttttgtaaataaagctgtttcccaaggaaag 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351133 ttcaggttcatgttcttattttagacctgttttgtaaataaagctgtttcccaaggaaag 5351074
Query: 1468 agatg 1472
|||||
Sbjct: 5351073 agatg 5351069
Score = 460 bits (232), Expect = e-126
Identities = 232/232 (100%)
Strand = Plus / Minus
Query: 12 cagcttgtggctcggcctgatgttgtggagatgcatgacgtgacggcccaggaccccaag 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359560 cagcttgtggctcggcctgatgttgtggagatgcatgacgtgacggcccaggaccccaag 5359501
Query: 72 ctcttggttcacctcaaggccacgcggaattctgtgcctgtgccccgccactggtgtttt 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359500 ctcttggttcacctcaaggccacgcggaattctgtgcctgtgccccgccactggtgtttt 5359441
Query: 132 aagcgcaagtacctgcagggcaaacgaggcatcgagaagccccccttcgagctgccagat 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359440 aagcgcaagtacctgcagggcaaacgaggcatcgagaagccccccttcgagctgccagat 5359381
Query: 192 ttcatcaaacgcacaggcatccaggagatgcgggaggccctgcaggagaagg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5359380 ttcatcaaacgcacaggcatccaggagatgcgggaggccctgcaggagaagg 5359329
Score = 371 bits (187), Expect = e-100
Identities = 187/187 (100%)
Strand = Plus / Minus
Query: 1043 ggttatgagccggaagggcccagcccccgagctgcaaggtgtggaagtggccctggcacc 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351836 ggttatgagccggaagggcccagcccccgagctgcaaggtgtggaagtggccctggcacc 5351777
Query: 1103 cgaagagttggagctggatcccatggccatgacccagaagtatgaggagcacgtgcggga 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351776 cgaagagttggagctggatcccatggccatgacccagaagtatgaggagcacgtgcggga 5351717
Query: 1163 gcagcaggcccaagtggagaaagaggacttcagcgacatggtggctgagcatgctgccaa 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351716 gcagcaggcccaagtggagaaagaggacttcagcgacatggtggctgagcatgctgccaa 5351657
Query: 1223 gcagaag 1229
|||||||
Sbjct: 5351656 gcagaag 5351650
Score = 303 bits (153), Expect = 1e-79
Identities = 153/153 (100%)
Strand = Plus / Minus
Query: 241 aggaggagcagaagaccatgaagtccaagatgcgagagaaggtccggcccaagatgggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5358261 aggaggagcagaagaccatgaagtccaagatgcgagagaaggtccggcccaagatgggca 5358202
Query: 301 agatcgacatcgactaccagaagctgcacgacgccttcttcaagtggcagaccaagccca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5358201 agatcgacatcgactaccagaagctgcacgacgccttcttcaagtggcagaccaagccca 5358142
Query: 361 agctgaccatccacggggacctgtactacgagg 393
|||||||||||||||||||||||||||||||||
Sbjct: 5358141 agctgaccatccacggggacctgtactacgagg 5358109
Score = 295 bits (149), Expect = 4e-77
Identities = 149/149 (100%)
Strand = Plus / Minus
Query: 693 tttcagaccaagactgaggaagaggagattgatcggaccccttggggggagctggagccg 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355105 tttcagaccaagactgaggaagaggagattgatcggaccccttggggggagctggagccg 5355046
Query: 753 tcggatgaagaatcttcagaagaagaggaagaggaggagagcgatgaagacaagccggat 812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355045 tcggatgaagaatcttcagaagaagaggaagaggaggagagcgatgaagacaagccggat 5354986
Query: 813 gagacaggcttcatcacccctgcagacag 841
|||||||||||||||||||||||||||||
Sbjct: 5354985 gagacaggcttcatcacccctgcagacag 5354957
Score = 218 bits (110), Expect = 7e-54
Identities = 110/110 (100%)
Strand = Plus / Minus
Query: 589 agagctgttccttcgggtaccatgctggtggctggggcaaacccccagtcgatgagaccg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355463 agagctgttccttcgggtaccatgctggtggctggggcaaacccccagtcgatgagaccg 5355404
Query: 649 ggaaacccctctatggggatgtgtttggaaccaatgctgctgaatttcag 698
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5355403 ggaaacccctctatggggatgtgtttggaaccaatgctgctgaatttcag 5355354
Score = 214 bits (108), Expect = 1e-52
Identities = 108/108 (100%)
Strand = Plus / Minus
Query: 483 aacgcacacaaggtccctcccccgtggctgatcgccatgcagcgctacgggccgcccccg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357240 aacgcacacaaggtccctcccccgtggctgatcgccatgcagcgctacgggccgcccccg 5357181
Query: 543 tcgtaccccaacctgaagatcccggggctgaactcgcccatccccgag 590
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357180 tcgtaccccaacctgaagatcccggggctgaactcgcccatccccgag 5357133
Score = 210 bits (106), Expect = 2e-51
Identities = 106/106 (100%)
Strand = Plus / Minus
Query: 838 acagcggcctcatcactcccggaggcttctcgtccgtgccggcaggaatggagacccctg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354869 acagcggcctcatcactcccggaggcttctcgtccgtgccggcaggaatggagacccctg 5354810
Query: 898 aactcattgagctgaggaagaagaagattgaggaggcgatggacgg 943
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5354809 aactcattgagctgaggaagaagaagattgaggaggcgatggacgg 5354764
Score = 204 bits (103), Expect = 1e-49
Identities = 103/103 (100%)
Strand = Plus / Minus
Query: 943 gaagtgagacaccgcagctcttcactgtgttgccggagaagagaacagccaccgttggag 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5352041 gaagtgagacaccgcagctcttcactgtgttgccggagaagagaacagccaccgttggag 5351982
Query: 1003 gggccatgatgggatcgacccacatctatgacatgtccacggt 1045
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351981 gggccatgatgggatcgacccacatctatgacatgtccacggt 5351939
Score = 182 bits (92), Expect = 4e-43
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 391 aggggaaggagtttgagacacggctgaaggagaagaagccaggcgatttgtctgatgagc 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5357441 aggggaaggagtttgagacacggctgaaggagaagaagccaggcgatttgtctgatgagc 5357382
Query: 451 tgcggatttccttggggatgccagtaggacca 482
||||||||||||||||||||||||||||||||
Sbjct: 5357381 tgcggatttccttggggatgccagtaggacca 5357350
>Sscrofa_Chr04
|| Length = 143465943
Score = 75.8 bits (38), Expect = 6e-11
Identities = 48/50 (96%), Gaps = 1/50 (2%)
Strand = Plus / Minus
Query: 1414 ttcatgttcttattttagacctgttttgtaaataaagctgtttcccaagg 1463
||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct: 111797873 ttcatgttcttattt-agacatgttttgtaaataaagctgtttcccaagg 111797825
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 39,641,646
Number of extensions: 752
Number of successful extensions: 752
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 11
Length of query: 1480
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1459
Effective length of database: 2,808,413,156
Effective search space: 4097474794604
Effective search space used: 4097474794604
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)