Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029739.1| cell death activator CIDE-B [Bos taurus]. 381 e-106
Alignment gi|NP_001076918.1| cell death activator CIDE-A [Bos taurus]. 154 2e-37
Alignment gi|NP_001069499.1| cell death activator CIDE-3 [Bos taurus]. 146 4e-35
Alignment gi|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like eff... 97 2e-20
>ref|NP_001029739.1| cell death activator CIDE-B [Bos taurus].
Length = 219
Score = 381 bits (978), Expect = e-106
Identities = 186/219 (84%), Positives = 204/219 (93%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLS L+PS LLRSVSNMS+DLGRKVWTS PP QRPFR+CD+KRTTRKGLTAATRQELL
Sbjct: 1 MEYLSNLDPSSLLRSVSNMSADLGRKVWTSAPPRQRPFRVCDNKRTTRKGLTAATRQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
DKAL L+L+G LTLVLEEDGT VESE+FFQLLEDDTCLMVLELGQ W PR+SGVLSYGL
Sbjct: 61 DKALEALVLSGALTLVLEEDGTTVESEEFFQLLEDDTCLMVLELGQSWSPRRSGVLSYGL 120
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
G+EKPKHS+DIA ITFDVYKQ+PRDLFGSLNIKATFYGLYS+SCDIQGLGPKKILRELLR
Sbjct: 121 GQEKPKHSKDIARITFDVYKQSPRDLFGSLNIKATFYGLYSLSCDIQGLGPKKILRELLR 180
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKGHLHPY 762
WAS+LLQGLGH+LLGISST+R AVEG E+WQ++G L PY
Sbjct: 181 WASSLLQGLGHMLLGISSTLRRAVEGTERWQRQGRLKPY 219
>ref|NP_001076918.1| cell death activator CIDE-A [Bos taurus].
Length = 219
Score = 154 bits (388), Expect = 2e-37
Identities = 88/209 (42%), Positives = 129/209 (61%), Gaps = 9/209 (4%)
Frame = +1
Query: 139 LLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML-N 315
LLR ++ M S + ++T P RPFR+ +H R++R+G+ A++ QELL K L L++ +
Sbjct: 11 LLRPLTFMGSQTKKVLFTPFMHPARPFRVSNHDRSSRRGVMASSLQELLSKTLDALVVAS 70
Query: 316 GVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHSQD 495
++TLVLEEDGT+V++E+FFQ L D+T LMVLE GQKW P + +P +
Sbjct: 71 QLVTLVLEEDGTVVDTEEFFQTLGDNTHLMVLEQGQKWTPA-----GHQTPARRPPQRRG 125
Query: 496 IACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLG 675
IA +TFD+YK +P+D+ G LN+KAT Y +YS+S DI G K +LR LLR+ S Q G
Sbjct: 126 IAKVTFDLYKLSPKDVIGCLNVKATMYEMYSVSYDIHCTGFKAMLRSLLRFLSHAAQVTG 185
Query: 676 HVLLG--------ISSTIRHAVEGAEQWQ 738
L+ ++ T AV G+ W+
Sbjct: 186 QCLIHMGTYMLRVLAETEEQAVPGSRPWR 214
>ref|NP_001069499.1| cell death activator CIDE-3 [Bos taurus].
Length = 222
Score = 146 bits (368), Expect = 4e-35
Identities = 79/180 (43%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
Frame = +1
Query: 202 PPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLMLN-GVLTLVLEEDGTMVESEDFFQ 378
P RP R+ R+ RKG+ + ++L K TLML LVLEEDGT VE+E++FQ
Sbjct: 25 PRARPCRVTTADRSVRKGIMVHSLEDLHVKVQDTLMLAYRPFFLVLEEDGTTVETEEYFQ 84
Query: 379 LLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHSQDIACITFDVYKQNPRDLFGSLN 558
L DDT MVL GQKW+P Y L D+A +TFD+YK NP+D G LN
Sbjct: 85 SLADDTVFMVLHKGQKWQPPSEQSTRYQLALSHKPAKIDVAQVTFDLYKVNPQDFIGCLN 144
Query: 559 IKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
+KAT YG YS+S D+ G K+I++E LRWA ++ GH+LLG S ++ ++ E+ Q
Sbjct: 145 VKATLYGTYSVSYDLHCSGAKRIMKEALRWALFSMRTTGHMLLGTSCYLQQLLDATEREQ 204
>ref|XP_002697851.1| PREDICTED: cell death-inducing DFFA-like effector a-like [Bos
taurus].
Length = 280
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/114 (46%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Frame = +1
Query: 139 LLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML-N 315
LLR ++ M S + ++T P RPFR+ +H R++R+G+ A++ QELL K L L++ +
Sbjct: 11 LLRPLTFMGSQTKKVLFTPFMHPARPFRVSNHDRSSRRGVMASSLQELLSKTLDALVVAS 70
Query: 316 GVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREK 477
++TLVLEEDGT+V++E+FFQ L D+T LMVLE GQKW P ++ L EK
Sbjct: 71 QLVTLVLEEDGTVVDTEEFFQTLGDNTHLMVLEQGQKWTP----IIRKALSEEK 120
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,380,524
Number of extensions: 1671846
Number of successful extensions: 6594
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6522
Number of HSP's successfully gapped: 4
Length of query: 370
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,240,222
Effective search space: 3787899052
Effective search space used: 3787899052
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850561.1| PREDICTED: similar to Cell death activator CIDE... 389 e-108
Alignment gi|XP_853997.1| PREDICTED: similar to Cell death activator CIDE... 388 e-108
Alignment gi|XP_848948.1| PREDICTED: similar to Cell death activator CIDE... 289 4e-78
Alignment gi|XP_541777.2| PREDICTED: similar to Cell death activator CIDE... 162 5e-40
Alignment gi|XP_547681.2| PREDICTED: similar to cell death-inducing DNA f... 151 9e-37
>ref|XP_850561.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 221
Score = 389 bits (1000), Expect = e-108
Identities = 189/221 (85%), Positives = 204/221 (92%), Gaps = 2/221 (0%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLSALNPSGLLRSVSNMSS+ GRKVWTS PPPQRPFR+CDHKRTTRKGLTAATRQELL
Sbjct: 1 MEYLSALNPSGLLRSVSNMSSEFGRKVWTSPPPPQRPFRVCDHKRTTRKGLTAATRQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
DKA L+L+G+LTLVLEEDGT VESEDFFQLLEDDTCLMVLE GQ W P +SG+LSYGL
Sbjct: 61 DKATEALLLSGMLTLVLEEDGTAVESEDFFQLLEDDTCLMVLECGQSWSPSRSGMLSYGL 120
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
GREKPKHS+DIA ITFDVYKQNPRDLFGSLN+KATFYGLYSMSCD QGLGPKK+LRELLR
Sbjct: 121 GREKPKHSKDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 180
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQ--WQQKGHLHPY 762
W SALLQGLGH+LLGISS++RH VEGAEQ WQ++G LHPY
Sbjct: 181 WTSALLQGLGHMLLGISSSLRHLVEGAEQWHWQRQGRLHPY 221
>ref|XP_853997.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 221
Score = 388 bits (996), Expect = e-108
Identities = 188/221 (85%), Positives = 204/221 (92%), Gaps = 2/221 (0%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLSALNPSGLLRSVSNMSS+ GRKVWTS PPPQRPFR+CDHKRTTRKGLTAATRQELL
Sbjct: 1 MEYLSALNPSGLLRSVSNMSSEFGRKVWTSPPPPQRPFRVCDHKRTTRKGLTAATRQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
DKA L+L+G+LTLVLEEDGT VESEDFFQLLEDDTCLMVLE GQ W P +SG+LSYGL
Sbjct: 61 DKATEALLLSGMLTLVLEEDGTAVESEDFFQLLEDDTCLMVLECGQSWSPSRSGMLSYGL 120
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
GREKPKHS+DIA ITF+VYKQNPRDLFGSLN+KATFYGLYSMSCD QGLGPKK+LRELLR
Sbjct: 121 GREKPKHSKDIARITFEVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 180
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQ--WQQKGHLHPY 762
W SALLQGLGH+LLGISS++RH VEGAEQ WQ++G LHPY
Sbjct: 181 WTSALLQGLGHMLLGISSSLRHLVEGAEQWHWQRQGRLHPY 221
>ref|XP_848948.1| PREDICTED: similar to Cell death activator CIDE-B (Cell
death-inducing DFFA-like effector B) [Canis familiaris].
Length = 328
Score = 289 bits (739), Expect = 4e-78
Identities = 142/172 (82%), Positives = 154/172 (89%), Gaps = 2/172 (1%)
Frame = +1
Query: 253 GLTAATRQELLDKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWR 432
GLTAATRQELLDKA L+L+G+LTLVLEEDGT VESED FQLLEDDTCLMVLE GQ W
Sbjct: 157 GLTAATRQELLDKATEALLLSGMLTLVLEEDGTAVESEDCFQLLEDDTCLMVLECGQSWS 216
Query: 433 PRKSGVLSYGLGREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGL 612
P +SG+LSYGLGREKPKHS+DIA ITFDVYKQ PRDLFGSLN+KATFYGLYSMSCD QGL
Sbjct: 217 PSRSGILSYGLGREKPKHSKDIARITFDVYKQYPRDLFGSLNVKATFYGLYSMSCDFQGL 276
Query: 613 GPKKILRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQ--WQQKGHLHPY 762
GPKK+LRELL W SALLQGLGH+LLGISS++RH VEGAEQ WQQ+G LHPY
Sbjct: 277 GPKKVLRELLHWTSALLQGLGHMLLGISSSLRHLVEGAEQWHWQQQGRLHPY 328
>ref|XP_541777.2| PREDICTED: similar to Cell death activator CIDE-3 (Cell
death-inducing DFFA-like effector protein C)
(Fat-specific protein FSP27 homolog) [Canis familiaris].
Length = 238
Score = 162 bits (410), Expect = 5e-40
Identities = 92/216 (42%), Positives = 133/216 (61%), Gaps = 5/216 (2%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTP---PPQRPFRICDHKRTTRKGLTAATRQ 276
M+ LS L P L R V+ +S + +++ + + P RP R+ R+ RKG+ A + +
Sbjct: 5 MKSLSLLYPKSLSRHVAVSTSVVTQQLSSKSSLEAPKARPCRVSTADRSVRKGIIAHSLK 64
Query: 277 ELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVL 453
+LL+K TL+L + LVLEEDGT VE+E++FQ L DDT MVL+ GQKW+P +
Sbjct: 65 DLLNKVRDTLLLADKPFYLVLEEDGTTVETEEYFQALADDTVFMVLQKGQKWQPPQEQGS 124
Query: 454 SYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKIL 630
Y L KP D+A +TFD+YK NP+D G LN+KAT YG YS+S D+ G K+I+
Sbjct: 125 RYQLSLSHKPAKKIDVAQVTFDLYKMNPQDFIGCLNVKATLYGTYSLSYDLHCYGAKRIM 184
Query: 631 RELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
+E+LRWA ++ GHVLLG S ++ ++ E Q
Sbjct: 185 KEVLRWALFSMKTTGHVLLGTSCYMQQLLDATEGGQ 220
>ref|XP_547681.2| PREDICTED: similar to cell death-inducing DNA fragmentation factor,
alpha subunit-like effector A [Canis familiaris].
Length = 250
Score = 151 bits (382), Expect = 9e-37
Identities = 87/201 (43%), Positives = 127/201 (63%), Gaps = 1/201 (0%)
Frame = +1
Query: 133 SGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML 312
S + R ++ M S R + T RPFR+ +H R++R+G+ A + +ELL K L L++
Sbjct: 40 SSISRPLTFMGSQTKRVLLTPLKHSARPFRVSNHDRSSRRGVMADSLKELLSKTLEALVI 99
Query: 313 -NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHS 489
+G++TLVLEEDGT+V++EDFFQ L D+T M+LE GQKW P + Y R++PK +
Sbjct: 100 TSGLVTLVLEEDGTVVDTEDFFQTLGDNTHFMILEEGQKWTPGAN----YTPARQQPKKA 155
Query: 490 QDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQG 669
IA +TFD+YK P+D+ G LN+KAT Y +YS+S DI+ G K +LR LLR S Q
Sbjct: 156 -GIARVTFDLYKLTPKDVIGCLNVKATMYEMYSVSYDIRCTGVKALLRSLLRLLSHAAQV 214
Query: 670 LGHVLLGISSTIRHAVEGAEQ 732
G +L+ SS + + E+
Sbjct: 215 TGQLLIYTSSYMLRVLGDTEE 235
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,613,481
Number of extensions: 1729364
Number of successful extensions: 6804
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6738
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 266
Effective length of database: 15,407,560
Effective search space: 4098410960
Effective search space used: 4098410960
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001106158.1| cell-death-inducing DNA-fragmentation-factor... 441 e-124
Alignment gi|NP_001106166.1| cell death activator CIDE-A [Sus scrofa]. 154 1e-37
Alignment gi|NP_001106159.1| cell death activator CIDE-3 [Sus scrofa]. 152 4e-37
>ref|NP_001106158.1| cell-death-inducing DNA-fragmentation-factor-like effector B [Sus
scrofa].
Length = 219
Score = 441 bits (1135), Expect = e-124
Identities = 218/219 (99%), Positives = 218/219 (99%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL
Sbjct: 1 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL
Sbjct: 61 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 120
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
GREKPKHSQDIA ITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR
Sbjct: 121 GREKPKHSQDIARITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 180
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKGHLHPY 762
WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKGHLHPY
Sbjct: 181 WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKGHLHPY 219
>ref|NP_001106166.1| cell death activator CIDE-A [Sus scrofa].
Length = 219
Score = 154 bits (388), Expect = 1e-37
Identities = 88/199 (44%), Positives = 128/199 (64%), Gaps = 1/199 (0%)
Frame = +1
Query: 139 LLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML-N 315
LLR ++ M + + T P RPFR+ +H R++R+G+TA++ QE L K L L++ +
Sbjct: 11 LLRPLTFMGLQTRKVLLTPLMHPARPFRVSNHNRSSRRGVTASSLQEPLSKTLDALVIAS 70
Query: 316 GVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHSQD 495
V+TLVLEEDGT+V++E+FFQ+L D+T MVLE GQKW P + Y +KPK S
Sbjct: 71 RVVTLVLEEDGTVVDTEEFFQMLGDNTHFMVLEKGQKWTPAGT----YIPAPQKPKRS-G 125
Query: 496 IACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLG 675
IA +TFD+YK NP+D+ G LN+KAT Y +YS+S DI+ G K +LR LLR+ S Q G
Sbjct: 126 IARVTFDLYKLNPKDVIGCLNVKATMYEMYSVSYDIRCTGLKALLRSLLRFLSHTAQVTG 185
Query: 676 HVLLGISSTIRHAVEGAEQ 732
L+ + + + + E+
Sbjct: 186 QCLIYMGTYMLRMLADTEE 204
>ref|NP_001106159.1| cell death activator CIDE-3 [Sus scrofa].
Length = 238
Score = 152 bits (383), Expect = 4e-37
Identities = 88/213 (41%), Positives = 127/213 (59%), Gaps = 5/213 (2%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTP---PPQRPFRICDHKRTTRKGLTAATRQ 276
M+ LS L P L R + +S + +++ + P RP ++ R+ RKG+ A +
Sbjct: 5 MKSLSLLYPRSLSRYAAVSTSVVTQQLLSEPSLEAPRTRPCKVSTADRSVRKGIMACGLE 64
Query: 277 ELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVL 453
+LL K +LML + LVLEEDGT VE+E++FQ L DDT MVL GQKW+P
Sbjct: 65 DLLLKVRDSLMLADKPFFLVLEEDGTTVETEEYFQSLADDTVFMVLHKGQKWQPPSQQGT 124
Query: 454 SYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKIL 630
Y L KP D+A +TF++YK NP+D G LN+KAT YG YS+S D++ G K+++
Sbjct: 125 RYQLSLSHKPAKKIDVARVTFNLYKVNPQDFIGCLNMKATLYGAYSLSYDLRCFGAKRVM 184
Query: 631 RELLRWASALLQGLGHVLLGISSTIRHAVEGAE 729
+E+LRWA +Q GHVLLG S ++ ++ E
Sbjct: 185 KEVLRWAIFGMQASGHVLLGTSCYLQRLLDTTE 217
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,605,850
Number of extensions: 1083656
Number of successful extensions: 4351
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4209
Number of HSP's successfully gapped: 3
Length of query: 370
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 270
Effective length of database: 8,854,232
Effective search space: 2390642640
Effective search space used: 2390642640
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034024.2| cell death activator CIDE-B [Mus musculus]. 363 e-100
Alignment gi|NP_848460.1| cell death activator CIDE-3 [Mus musculus]. 147 1e-35
Alignment gi|NP_031728.2| cell death activator CIDE-A [Mus musculus]. 144 9e-35
Alignment gi|NP_034174.2| DNA fragmentation factor subunit alpha isoform ... 49 5e-06
Alignment gi|NP_001020467.1| DNA fragmentation factor subunit alpha isofo... 49 5e-06
>ref|NP_034024.2| cell death activator CIDE-B [Mus musculus].
Length = 219
Score = 363 bits (932), Expect = e-100
Identities = 177/219 (80%), Positives = 196/219 (89%), Gaps = 2/219 (0%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLSA NP+GLLRSVS +SS+L R+VW S PPPQRPFR+CDHKRT RKGLTAA+ QELL
Sbjct: 1 MEYLSAFNPNGLLRSVSTVSSELSRRVWNSAPPPQRPFRVCDHKRTVRKGLTAASLQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
DK L TL+L GVLTLVLEEDGT V+SEDFFQLLEDDTCLMVLE GQ W P KSG+LSYGL
Sbjct: 61 DKVLETLLLRGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLEQGQSWSP-KSGMLSYGL 119
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
GREKPKHS+DIA ITFDVYKQNPRDLFGSLN+KATFYGLYSMSCD QG+GPK++LRELLR
Sbjct: 120 GREKPKHSKDIARITFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGVGPKRVLRELLR 179
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKG--HLH 756
W S+LLQGLGH+LLGISST+RH VEGA++WQ G HLH
Sbjct: 180 WTSSLLQGLGHMLLGISSTLRHVVEGADRWQWHGQRHLH 218
>ref|NP_848460.1| cell death activator CIDE-3 [Mus musculus].
Length = 239
Score = 147 bits (371), Expect = 1e-35
Identities = 90/221 (40%), Positives = 129/221 (58%), Gaps = 10/221 (4%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTP----PPQRPFRICDHKRTTRKGLTAATR 273
M+ LS L P L R V+ +S+ + + S P P RP R+ R RKG+ A +
Sbjct: 5 MKSLSLLYPRSLSRHVA-VSTAVVTQQLVSKPSRETPRARPCRVSTADRKVRKGIMAHSL 63
Query: 274 QELLDKALGTLMLNGV-LTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRP----- 435
++LL+K L L +LVLEEDGT+VE+E++FQ L DT MVL GQKW+P
Sbjct: 64 EDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLKGQKWKPPSEQR 123
Query: 436 RKSGVLSYGLGREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLG 615
+K L+ +KP D+A +TFD+YK NP+D G LN+KAT Y YS+S D+
Sbjct: 124 KKRAQLALS---QKPTKKIDVARVTFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHCYK 180
Query: 616 PKKILRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
K+I++E+LRW +Q GH+LLG SS ++ ++ E+ Q
Sbjct: 181 AKRIVKEMLRWTLFSMQATGHMLLGTSSYMQQFLDATEEEQ 221
>ref|NP_031728.2| cell death activator CIDE-A [Mus musculus].
Length = 217
Score = 144 bits (364), Expect = 9e-35
Identities = 81/184 (44%), Positives = 118/184 (64%), Gaps = 1/184 (0%)
Frame = +1
Query: 139 LLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLMLN- 315
L+R ++ M + + T P RPFR+ +H R++R+G+ A++ QEL+ K L L++
Sbjct: 11 LIRPLTFMGLQTKKVLLTPLIHPARPFRVSNHDRSSRRGVMASSLQELISKTLDVLVITT 70
Query: 316 GVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHSQD 495
G++TLVLEEDGT+V++E+FFQ L D+T M+LE GQKW P Y ++PK S
Sbjct: 71 GLVTLVLEEDGTVVDTEEFFQTLRDNTHFMILEKGQKWTPGSK----YVPVCKQPKKS-G 125
Query: 496 IACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLG 675
IA +TFD+Y+ NP+D G LN+KAT Y +YS+S DI+ K +LR LLR+ S Q G
Sbjct: 126 IARVTFDLYRLNPKDFLGCLNVKATMYEMYSVSYDIRCTSFKAVLRNLLRFMSYAAQMTG 185
Query: 676 HVLL 687
L+
Sbjct: 186 QFLV 189
>ref|NP_034174.2| DNA fragmentation factor subunit alpha isoform b [Mus musculus].
Length = 265
Score = 49.3 bits (116), Expect = 5e-06
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Frame = +1
Query: 169 DLGRKVWTSTPPPQRPFRIC----DHKRTTRKGLTAATRQELLDKALGTLMLNGVLT--- 327
+L R P RP + C +H R + G+ A++ +EL KA L ++ LT
Sbjct: 2 ELSRGASAPDPDDVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPIT 60
Query: 328 LVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKW 429
LVL EDGT+V+ +D+F L +T + L +KW
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALACNEKW 94
>ref|NP_001020467.1| DNA fragmentation factor subunit alpha isoform a [Mus musculus].
Length = 331
Score = 49.3 bits (116), Expect = 5e-06
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Frame = +1
Query: 169 DLGRKVWTSTPPPQRPFRIC----DHKRTTRKGLTAATRQELLDKALGTLMLNGVLT--- 327
+L R P RP + C +H R + G+ A++ +EL KA L ++ LT
Sbjct: 2 ELSRGASAPDPDDVRPLKPCLLRRNHSRD-QHGVAASSLEELRSKACELLAIDKSLTPIT 60
Query: 328 LVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKW 429
LVL EDGT+V+ +D+F L +T + L +KW
Sbjct: 61 LVLAEDGTIVDDDDYFLCLPSNTKFVALACNEKW 94
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,207,061
Number of extensions: 1387402
Number of successful extensions: 5007
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4935
Number of HSP's successfully gapped: 5
Length of query: 370
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 267
Effective length of database: 12,523,851
Effective search space: 3343868217
Effective search space used: 3343868217
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_055245.2| cell death activator CIDE-B [Homo sapiens]. 389 e-108
Alignment gi|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo ... 159 4e-39
Alignment gi|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sap... 159 4e-39
Alignment gi|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo ... 159 4e-39
Alignment gi|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sap... 153 3e-37
Alignment gi|NP_001186480.1| cell death activator CIDE-3 isoform 2 [Homo ... 151 9e-37
>ref|NP_055245.2| cell death activator CIDE-B [Homo sapiens].
Length = 219
Score = 389 bits (998), Expect = e-108
Identities = 187/219 (85%), Positives = 201/219 (91%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELL 285
MEYLSALNPS LLRSVSN+SS+ GR+VWTS PPPQRPFR+CDHKRT RKGLTAATRQELL
Sbjct: 1 MEYLSALNPSDLLRSVSNISSEFGRRVWTSAPPPQRPFRVCDHKRTIRKGLTAATRQELL 60
Query: 286 DKALGTLMLNGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGL 465
KAL TL+LNGVLTLVLEEDGT V+SEDFFQLLEDDTCLMVL+ GQ W P +SGVLSYGL
Sbjct: 61 AKALETLLLNGVLTLVLEEDGTAVDSEDFFQLLEDDTCLMVLQSGQSWSPTRSGVLSYGL 120
Query: 466 GREKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLR 645
GRE+PKHS+DIA TFDVYKQNPRDLFGSLN+KATFYGLYSMSCD QGLGPKK+LRELLR
Sbjct: 121 GRERPKHSKDIARFTFDVYKQNPRDLFGSLNVKATFYGLYSMSCDFQGLGPKKVLRELLR 180
Query: 646 WASALLQGLGHVLLGISSTIRHAVEGAEQWQQKGHLHPY 762
W S LLQGLGH+LLGISST+RHAVEGAEQWQQKG LH Y
Sbjct: 181 WTSTLLQGLGHMLLGISSTLRHAVEGAEQWQQKGRLHSY 219
>ref|NP_001186481.1| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 159 bits (402), Expect = 4e-39
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQ----RPFRICDHKRTTRKGLTAATR 273
M+ LS L P L R VS +S + +++ S P P+ RP R+ R+ RKG+ A +
Sbjct: 5 MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 63
Query: 274 QELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGV 450
++LL K TLML + LVLEEDGT VE+E++FQ L DT MVL+ GQKW+P
Sbjct: 64 EDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123
Query: 451 LSYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKI 627
+ L KP D+A +TFD+YK NP+D G LN+KATFY YS+S D+ G K+I
Sbjct: 124 TRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRI 183
Query: 628 LRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
++E RWA +Q GHVLLG S ++ ++ E+ Q
Sbjct: 184 MKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQ 220
>ref|NP_071377.2| cell death activator CIDE-3 isoform 3 [Homo sapiens].
Length = 238
Score = 159 bits (402), Expect = 4e-39
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQ----RPFRICDHKRTTRKGLTAATR 273
M+ LS L P L R VS +S + +++ S P P+ RP R+ R+ RKG+ A +
Sbjct: 5 MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 63
Query: 274 QELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGV 450
++LL K TLML + LVLEEDGT VE+E++FQ L DT MVL+ GQKW+P
Sbjct: 64 EDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 123
Query: 451 LSYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKI 627
+ L KP D+A +TFD+YK NP+D G LN+KATFY YS+S D+ G K+I
Sbjct: 124 TRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRI 183
Query: 628 LRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
++E RWA +Q GHVLLG S ++ ++ E+ Q
Sbjct: 184 MKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQ 220
>ref|NP_001186552.1| cell death activator CIDE-3 isoform 1 [Homo sapiens].
Length = 251
Score = 159 bits (402), Expect = 4e-39
Identities = 94/217 (43%), Positives = 130/217 (59%), Gaps = 6/217 (2%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQ----RPFRICDHKRTTRKGLTAATR 273
M+ LS L P L R VS +S + +++ S P P+ RP R+ R+ RKG+ A +
Sbjct: 18 MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 76
Query: 274 QELLDKALGTLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGV 450
++LL K TLML + LVLEEDGT VE+E++FQ L DT MVL+ GQKW+P
Sbjct: 77 EDLLLKVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKGQKWQPPSEQG 136
Query: 451 LSYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKI 627
+ L KP D+A +TFD+YK NP+D G LN+KATFY YS+S D+ G K+I
Sbjct: 137 TRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSYDLHCCGAKRI 196
Query: 628 LRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
++E RWA +Q GHVLLG S ++ ++ E+ Q
Sbjct: 197 MKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQ 233
>ref|NP_001270.1| cell death activator CIDE-A isoform 1 [Homo sapiens].
Length = 219
Score = 153 bits (386), Expect = 3e-37
Identities = 83/199 (41%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Frame = +1
Query: 139 LLRSVSNMSSDLGRKVWTSTPPPQRPFRICDHKRTTRKGLTAATRQELLDKALGTLML-N 315
L+R ++ M S R ++T P RPFR+ +H R++R+G+ A++ QEL+ K L L++
Sbjct: 11 LIRPLTFMGSQTKRVLFTPLMHPARPFRVSNHDRSSRRGVMASSLQELISKTLDALVIAT 70
Query: 316 GVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELGQKWRPRKSGVLSYGLGREKPKHSQD 495
G++TLVLEEDGT+V++E+FFQ L D+T M+LE GQKW P V + P
Sbjct: 71 GLVTLVLEEDGTVVDTEEFFQTLGDNTHFMILEKGQKWMPGSQHVPTCS-----PPKRSG 125
Query: 496 IACITFDVYKQNPRDLFGSLNIKATFYGLYSMSCDIQGLGPKKILRELLRWASALLQGLG 675
IA +TFD+Y+ NP+D G LN+KAT Y +YS+S DI+ G K +LR LLR+ S Q G
Sbjct: 126 IARVTFDLYRLNPKDFIGCLNVKATMYEMYSVSYDIRCTGLKGLLRSLLRFLSYSAQVTG 185
Query: 676 HVLLGISSTIRHAVEGAEQ 732
L+ + + + ++ E+
Sbjct: 186 QFLIYLGTYMLRVLDDKEE 204
>ref|NP_001186480.1| cell death activator CIDE-3 isoform 2 [Homo sapiens].
Length = 248
Score = 151 bits (382), Expect = 9e-37
Identities = 94/227 (41%), Positives = 130/227 (57%), Gaps = 16/227 (7%)
Frame = +1
Query: 106 MEYLSALNPSGLLRSVSNMSSDLGRKVWTSTPPPQ----RPFRICDHKRTTRKGLTAATR 273
M+ LS L P L R VS +S + +++ S P P+ RP R+ R+ RKG+ A +
Sbjct: 5 MKSLSLLYPKSLSRHVSVRTSVVTQQL-LSEPSPKAPRARPCRVSTADRSVRKGIMAYSL 63
Query: 274 QELLDKALG----------TLML-NGVLTLVLEEDGTMVESEDFFQLLEDDTCLMVLELG 420
++LL K TLML + LVLEEDGT VE+E++FQ L DT MVL+ G
Sbjct: 64 EDLLLKTRNPEARSQEVRDTLMLADKPFFLVLEEDGTTVETEEYFQALAGDTVFMVLQKG 123
Query: 421 QKWRPRKSGVLSYGLG-REKPKHSQDIACITFDVYKQNPRDLFGSLNIKATFYGLYSMSC 597
QKW+P + L KP D+A +TFD+YK NP+D G LN+KATFY YS+S
Sbjct: 124 QKWQPPSEQGTRHPLSLSHKPAKKIDVARVTFDLYKLNPQDFIGCLNVKATFYDTYSLSY 183
Query: 598 DIQGLGPKKILRELLRWASALLQGLGHVLLGISSTIRHAVEGAEQWQ 738
D+ G K+I++E RWA +Q GHVLLG S ++ ++ E+ Q
Sbjct: 184 DLHCCGAKRIMKEAFRWALFSMQATGHVLLGTSCYLQQLLDATEEGQ 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,475,592
Number of extensions: 1688294
Number of successful extensions: 6572
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6473
Number of HSP's successfully gapped: 6
Length of query: 370
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 266
Effective length of database: 14,868,908
Effective search space: 3955129528
Effective search space used: 3955129528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008733
(1111 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 888 0.0
>Sscrofa_Chr07
|| Length = 134764511
Score = 888 bits (448), Expect = 0.0
Identities = 471/476 (98%), Gaps = 2/476 (0%)
Strand = Plus / Plus
Query: 629 tcagggagctcctccgatgggcctccgcactgctgcaaggcctgggccacgtcttgctgg 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256197 tcagggagctcctccgatgggcctccgcactgctgcaaggcctgggccacgtcttgctgg 80256256
Query: 689 gaatttcctccaccattcgtcatgcagtggaaggggctgagcagtggcagcaaaagggtc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256257 gaatttcctccaccattcgtcatgcagtggaaggggctgagcagtggcagcaaaagggtc 80256316
Query: 749 accttcacccctactgagcaggagctctgaccttctgcctctagactcattccaagagac 808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256317 accttcacccctactgagcaggagctctgaccttctgcctctagactcattccaagagac 80256376
Query: 809 agattgtgacaacaccaagtttgggggccttcagacagtgcaggctcagtaactcacctg 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256377 agattgtgacaacaccaagtttgggggccttcagacagtgcaggctcagtaactcacctg 80256436
Query: 869 atttccccactgtccctcaatcctatgggacaggccccatcagcataatgtcctataccc 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256437 atttccccactgtccctcaatcctatgggacaggccccatcagcataatgtcctataccc 80256496
Query: 929 ccaccttatgcctcctggccaccttttcagtctcctgctccctgaaagaccacagcctgt 988
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 80256497 ccaccttatgcctcctggccacctttccagtctcctgctccctgaaagaccacagcctgt 80256556
Query: 989 ccccggacacctggatcccaccctgactgctgctatacctagaggtccttatgactcctc 1048
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80256557 ccccggacacctggatcccaccctgactgctgctatacctagaggtccttatgactcct- 80256615
Query: 1049 ccggtccctaa-ctcctctaccttgagatcgctatttctctgtatccctcctcccc 1103
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 80256616 cctgtccctaagctcctctaccttgagatcgctatttctctgtatccttcctcccc 80256671
Score = 385 bits (194), Expect = e-104
Identities = 194/194 (100%)
Strand = Plus / Plus
Query: 440 agagtggggtgctgtcatatggcctgggccgggagaagcccaagcacagccaggacatcg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80255868 agagtggggtgctgtcatatggcctgggccgggagaagcccaagcacagccaggacatcg 80255927
Query: 500 cctgcatcacctttgacgtatacaagcaaaacccccgagacctctttggcagcctgaaca 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80255928 cctgcatcacctttgacgtatacaagcaaaacccccgagacctctttggcagcctgaaca 80255987
Query: 560 tcaaagccacattctacgggctctactccatgagttgtgacatccaaggactcggcccaa 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80255988 tcaaagccacattctacgggctctactccatgagttgtgacatccaaggactcggcccaa 80256047
Query: 620 agaaaatactcagg 633
||||||||||||||
Sbjct: 80256048 agaaaatactcagg 80256061
Score = 301 bits (152), Expect = 4e-79
Identities = 152/152 (100%)
Strand = Plus / Plus
Query: 290 aggcgctggggactctgatgctgaatggagtgttaacactggtgcttgaggaggacggga 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80255486 aggcgctggggactctgatgctgaatggagtgttaacactggtgcttgaggaggacggga 80255545
Query: 350 ccatggtggagagcgaggacttcttccagctgttggaggatgacacatgcctgatggtgc 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80255546 ccatggtggagagcgaggacttcttccagctgttggaggatgacacatgcctgatggtgc 80255605
Query: 410 tggagttgggacagaaatggaggcccaggaag 441
||||||||||||||||||||||||||||||||
Sbjct: 80255606 tggagttgggacagaaatggaggcccaggaag 80255637
Score = 297 bits (150), Expect = 7e-78
Identities = 150/150 (100%)
Strand = Plus / Plus
Query: 144 caggtcagtatccaacatgagctccgacttaggccgtaaggtctggacctccactccacc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80254488 caggtcagtatccaacatgagctccgacttaggccgtaaggtctggacctccactccacc 80254547
Query: 204 accccagcgacctttccgtatctgtgatcacaagcggaccacccggaaaggcctgacagc 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80254548 accccagcgacctttccgtatctgtgatcacaagcggaccacccggaaaggcctgacagc 80254607
Query: 264 cgccacccgccaggaactgctagacaaggc 293
||||||||||||||||||||||||||||||
Sbjct: 80254608 cgccacccgccaggaactgctagacaaggc 80254637
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Plus
Query: 1 tcccgggtctgtaacagaaaacgccagcgctcagctccaaccagtgcagaaccacccagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80253834 tcccgggtctgtaacagaaaacgccagcgctcagctccaaccagtgcagaaccacccagc 80253893
Query: 61 ccagaactcccaggacgggccactcttaggctccttccctccaccatggagtacctctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80253894 ccagaactcccaggacgggccactcttaggctccttccctccaccatggagtacctctct 80253953
Query: 121 gccctgaaccccagcggcctgctcaggt 148
||||||||||||||||||||||||||||
Sbjct: 80253954 gccctgaaccccagcggcctgctcaggt 80253981
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 30,852,245
Number of extensions: 190
Number of successful extensions: 190
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 5
Length of query: 1111
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1090
Effective length of database: 2,808,413,156
Effective search space: 3061170340040
Effective search space used: 3061170340040
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)