Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001033306.1| alpha N-terminal protein methyltransferase 1... 427 e-120
Alignment gi|NP_001179465.1| methyltransferase-like protein 11B [Bos taur... 240 1e-63
Alignment gi|XP_002694076.1| PREDICTED: methyltransferase like 11B-like [... 240 1e-63
>ref|NP_001033306.1| alpha N-terminal protein methyltransferase 1A [Bos taurus].
Length = 223
Score = 427 bits (1098), Expect = e-120
Identities = 209/219 (95%), Positives = 213/219 (97%)
Frame = +1
Query: 196 MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 375
MTSEVIEDEKQFYSKA+TYWKEVP TVDGMLGGYGHISSIDINSSRKFLQRFLREG NKT
Sbjct: 1 MTSEVIEDEKQFYSKAKTYWKEVPATVDGMLGGYGHISSIDINSSRKFLQRFLREGQNKT 60
Query: 376 GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ 555
GTS ALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAK+YLGEEGKRVRN+FCCGLQ
Sbjct: 61 GTSYALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGKRVRNFFCCGLQ 120
Query: 556 DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 735
DFSPEP SYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD
Sbjct: 121 DFSPEPQSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 180
Query: 736 SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 852
SSVCR LDVVHRI+R AGLSLLAQERQENLPDEIYHVYS
Sbjct: 181 SSVCRALDVVHRIVRSAGLSLLAQERQENLPDEIYHVYS 219
>ref|NP_001179465.1| methyltransferase-like protein 11B [Bos taurus].
Length = 283
Score = 240 bits (613), Expect = 1e-63
Identities = 109/219 (49%), Positives = 167/219 (76%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI E QFY++A+ +++EVP T +GM+G + +S+ DI +S+KFL++F+ GP +
Sbjct: 56 ALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSNPDIQASQKFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A++YL +G +V +Y C L
Sbjct: 115 AGTDCALDCGSGIGRVSKHVLLPVFNTVELVDMMESFLLEAQNYLQVKGDKVESYHCYSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWVIGHLTD+ L FL RC+ GL+ NGII++KDN+A++G I D
Sbjct: 175 QEFTPPLGRYDVIWIQWVIGHLTDKDLLAFLSRCRDGLKENGIIILKDNVARKGCIFDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D++ +IR++GL +L Q++Q+ P++ V+
Sbjct: 235 DSSVTRDMDILQTLIRKSGLVVLGQQKQDGFPEQCVPVW 273
>ref|XP_002694076.1| PREDICTED: methyltransferase like 11B-like [Bos taurus].
Length = 283
Score = 240 bits (613), Expect = 1e-63
Identities = 109/219 (49%), Positives = 167/219 (76%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI E QFY++A+ +++EVP T +GM+G + +S+ DI +S+KFL++F+ GP +
Sbjct: 56 ALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSNPDIQASQKFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A++YL +G +V +Y C L
Sbjct: 115 AGTDCALDCGSGIGRVSKHVLLPVFNTVELVDMMESFLLEAQNYLQVKGDKVESYHCYSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWVIGHLTD+ L FL RC+ GL+ NGII++KDN+A++G I D
Sbjct: 175 QEFTPPLGRYDVIWIQWVIGHLTDKDLLAFLSRCRDGLKENGIIILKDNVARKGCIFDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D++ +IR++GL +L Q++Q+ P++ V+
Sbjct: 235 DSSVTRDMDILQTLIRKSGLVVLGQQKQDGFPEQCVPVW 273
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 32,939,619
Number of extensions: 868391
Number of successful extensions: 5412
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5367
Number of HSP's successfully gapped: 3
Length of query: 359
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 256
Effective length of database: 14,273,310
Effective search space: 3653967360
Effective search space used: 3653967360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_548421.2| PREDICTED: similar to CG1675-PA [Canis familiar... 444 e-125
Alignment gi|XP_547472.1| PREDICTED: similar to Y74C9A.3 [Canis familiari... 241 1e-63
>ref|XP_548421.2| PREDICTED: similar to CG1675-PA [Canis familiaris].
Length = 245
Score = 444 bits (1141), Expect = e-125
Identities = 214/222 (96%), Positives = 221/222 (99%)
Frame = +1
Query: 187 GDSMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGP 366
GDSMTSEVIEDEKQFYSKA+TYWKEVPPTVDGMLGGYGHISSIDI+SSRKFLQRFLREGP
Sbjct: 20 GDSMTSEVIEDEKQFYSKAKTYWKEVPPTVDGMLGGYGHISSIDISSSRKFLQRFLREGP 79
Query: 367 NKTGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCC 546
NKTGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAK+YLGEEGKRVRNYFCC
Sbjct: 80 NKTGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKTYLGEEGKRVRNYFCC 139
Query: 547 GLQDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILD 726
GLQDFSPEP+SYDVIWIQWVIGHLTDQHLAEFLRRCK+GLRPNGIIVIKDNMAQEGVILD
Sbjct: 140 GLQDFSPEPNSYDVIWIQWVIGHLTDQHLAEFLRRCKQGLRPNGIIVIKDNMAQEGVILD 199
Query: 727 DVDSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 852
DVDSSVCRDL+VVHRI+R AGLSLLAQERQENLPDEIYHVYS
Sbjct: 200 DVDSSVCRDLEVVHRIVRSAGLSLLAQERQENLPDEIYHVYS 241
>ref|XP_547472.1| PREDICTED: similar to Y74C9A.3 [Canis familiaris].
Length = 283
Score = 241 bits (614), Expect = 1e-63
Identities = 110/219 (50%), Positives = 166/219 (75%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI E QFY++A+ +++EVP T +GM+G + +S+ DI SSRKFL++F+ GP +
Sbjct: 56 ALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSNPDIQSSRKFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A++YL G++V +Y C L
Sbjct: 115 AGTDCALDCGSGIGRVSKHVLLPVFNSVELVDMMESFLLEAQNYLQVNGEKVESYHCYSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWV G+LTD+ L FL RC+ GL+ NG+I++KDN+A+EG I D
Sbjct: 175 QEFTPPLGRYDVIWIQWVSGYLTDKDLLAFLSRCRAGLKENGVIILKDNVAREGCIFDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D++ +IR++GL +L QE+Q+ P++ V+
Sbjct: 235 DSSVTRDMDILRSLIRKSGLVVLGQEKQDGFPEQCIPVW 273
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 34,453,625
Number of extensions: 902017
Number of successful extensions: 5545
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5515
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,874,504
Length adjustment: 104
Effective length of query: 255
Effective length of database: 15,407,560
Effective search space: 3928927800
Effective search space used: 3928927800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001230386.1| alpha N-terminal protein methyltransferase 1... 451 e-127
Alignment gi|NP_001230578.1| alpha N-terminal protein methyltransferase 1... 234 6e-62
>ref|NP_001230386.1| alpha N-terminal protein methyltransferase 1A [Sus scrofa].
Length = 223
Score = 451 bits (1159), Expect = e-127
Identities = 219/219 (100%), Positives = 219/219 (100%)
Frame = +1
Query: 196 MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 375
MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
Sbjct: 1 MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 60
Query: 376 GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ 555
GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ
Sbjct: 61 GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ 120
Query: 556 DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 735
DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD
Sbjct: 121 DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 180
Query: 736 SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 852
SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS
Sbjct: 181 SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 219
>ref|NP_001230578.1| alpha N-terminal protein methyltransferase 1B [Sus scrofa].
Length = 283
Score = 234 bits (597), Expect = 6e-62
Identities = 108/219 (49%), Positives = 163/219 (74%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI E QFY++A+ +++EVP T +GM+G + +S DI +SR+FL++F+ GP +
Sbjct: 56 ALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSDPDIEASREFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A++YL +G +V +Y C L
Sbjct: 115 AGTDCALDCGSGIGRVSKHVLLPVFNTVELVDMMESFLLEAQNYLQVKGDKVESYHCQSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWV G+LTD+ L FL RC+ GL+ NGII++KDN+A+EG I D
Sbjct: 175 QEFTPPLGRYDVIWIQWVSGYLTDKDLLAFLCRCRDGLKENGIIILKDNVAREGCIFDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D+ + R++GL +L Q++QE P++ V+
Sbjct: 235 DSSVTRDMDIFRSLFRKSGLVVLGQKKQEGFPEQCIPVW 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 21,274,593
Number of extensions: 562563
Number of successful extensions: 3729
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3659
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 259
Effective length of database: 8,854,232
Effective search space: 2293246088
Effective search space used: 2293246088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_733480.1| alpha N-terminal protein methyltransferase 1A [... 428 e-120
Alignment gi|NP_001137428.1| alpha N-terminal protein methyltransferase 1... 237 1e-62
>ref|NP_733480.1| alpha N-terminal protein methyltransferase 1A [Mus musculus].
Length = 223
Score = 428 bits (1100), Expect = e-120
Identities = 206/219 (94%), Positives = 214/219 (97%)
Frame = +1
Query: 196 MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 375
MTSEVIEDEKQFYSKA+TYWK++PPTVDGMLGGYGHIS+ID+NSSRKFLQRFLREGPNKT
Sbjct: 1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISNIDLNSSRKFLQRFLREGPNKT 60
Query: 376 GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ 555
GTSCALDCGAGIGRITKRLLLPLF VVDMVDVTEDFL KAK+YLGEEGKRVRNYFCCGLQ
Sbjct: 61 GTSCALDCGAGIGRITKRLLLPLFRVVDMVDVTEDFLAKAKTYLGEEGKRVRNYFCCGLQ 120
Query: 556 DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 735
DFSPEP SYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD
Sbjct: 121 DFSPEPGSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 180
Query: 736 SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 852
SSVCRDL+VV RIIR AGLSLLA+ERQENLPDEIYHVYS
Sbjct: 181 SSVCRDLEVVRRIIRTAGLSLLAEERQENLPDEIYHVYS 219
>ref|NP_001137428.1| alpha N-terminal protein methyltransferase 1B [Mus musculus].
Length = 283
Score = 237 bits (605), Expect = 1e-62
Identities = 109/219 (49%), Positives = 165/219 (75%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI+ E QFY++A+ +++EVP T +GM+G + +S+ DI +SR+FL++F+ GP +
Sbjct: 56 ALTSQVIDGEMQFYARAKLFYQEVPATEEGMMGNFIELSNPDIQASREFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A+SYL +V +Y C L
Sbjct: 115 AGTGCALDCGSGIGRVSKHVLLPVFSSVELVDMMESFLLEAQSYLQVNEDKVESYHCYSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWV G+LTD+ L FL RC+ GL+ NG+I++KDN+A+EG I D
Sbjct: 175 QEFTPHLGRYDVIWIQWVSGYLTDKDLLAFLSRCRDGLKENGVIILKDNVAREGCIFDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D++ +IR++GL +L QE+QE P++ V+
Sbjct: 235 DSSVTRDMDILRSLIRKSGLVVLGQEKQEGFPEQCVPVW 273
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 28,196,313
Number of extensions: 716030
Number of successful extensions: 3987
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3960
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 256
Effective length of database: 12,523,851
Effective search space: 3206105856
Effective search space used: 3206105856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_054783.2| alpha N-terminal protein methyltransferase 1A [... 420 e-117
Alignment gi|NP_001129579.1| alpha N-terminal protein methyltransferase 1... 243 2e-64
>ref|NP_054783.2| alpha N-terminal protein methyltransferase 1A [Homo sapiens].
Length = 223
Score = 420 bits (1079), Expect = e-117
Identities = 203/219 (92%), Positives = 211/219 (96%)
Frame = +1
Query: 196 MTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 375
MTSEVIEDEKQFYSKA+TYWK++PPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT
Sbjct: 1 MTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKT 60
Query: 376 GTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGLQ 555
GTSCALDCGAGIGRITKRLLLPLF VDMVD+TEDFLV+AK+YLGEEGKRVRNYFCCGLQ
Sbjct: 61 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 120
Query: 556 DFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDVD 735
DF+PEP SYDVIWIQWVIGHLTDQHLAEFLRRCK LRPNGIIVIKDNMAQEGVILDDVD
Sbjct: 121 DFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVD 180
Query: 736 SSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVYS 852
SSVCRDLDVV RII AGLSLLA+ERQENLPDEIYHVYS
Sbjct: 181 SSVCRDLDVVRRIICSAGLSLLAEERQENLPDEIYHVYS 219
>ref|NP_001129579.1| alpha N-terminal protein methyltransferase 1B [Homo sapiens].
Length = 283
Score = 243 bits (620), Expect = 2e-64
Identities = 112/219 (51%), Positives = 167/219 (76%)
Frame = +1
Query: 193 SMTSEVIEDEKQFYSKAETYWKEVPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNK 372
++TS+VI E QFY++A+ +++EVP T +GM+G + +SS DI +S+KFL++F+ GP +
Sbjct: 56 ALTSQVINGEMQFYARAKLFYQEVPATEEGMMGNFIELSSPDIQASQKFLRKFVG-GPGR 114
Query: 373 TGTSCALDCGAGIGRITKRLLLPLFGVVDMVDVTEDFLVKAKSYLGEEGKRVRNYFCCGL 552
GT CALDCG+GIGR++K +LLP+F V++VD+ E FL++A++YL +G +V +Y C L
Sbjct: 115 AGTDCALDCGSGIGRVSKHVLLPVFNSVELVDMMESFLLEAQNYLQVKGDKVESYHCYSL 174
Query: 553 QDFSPEPHSYDVIWIQWVIGHLTDQHLAEFLRRCKRGLRPNGIIVIKDNMAQEGVILDDV 732
Q+F+P YDVIWIQWV GHLTD+ L FL RC+ GL+ NGII++KDN+A+EG ILD
Sbjct: 175 QEFTPPFRRYDVIWIQWVSGHLTDKDLLAFLSRCRDGLKENGIIILKDNVAREGCILDLS 234
Query: 733 DSSVCRDLDVVHRIIRRAGLSLLAQERQENLPDEIYHVY 849
DSSV RD+D++ +IR++GL +L QE+Q+ P++ V+
Sbjct: 235 DSSVTRDMDILRSLIRKSGLVVLGQEKQDGFPEQCIPVW 273
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 33,621,248
Number of extensions: 871255
Number of successful extensions: 5063
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5033
Number of HSP's successfully gapped: 2
Length of query: 359
Length of database: 18,297,164
Length adjustment: 104
Effective length of query: 255
Effective length of database: 14,868,908
Effective search space: 3791571540
Effective search space used: 3791571540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008735
(1079 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr01 835 0.0
>Sscrofa_Chr01
|| Length = 315321322
Score = 835 bits (421), Expect = 0.0
Identities = 454/469 (96%)
Strand = Plus / Plus
Query: 609 aggccacctgactgaccagcacctggccgagttcctgcggcgctgcaagcggggcctgcg 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695494 aggccacctgactgaccagcacctggccgagttcctgcggcgctgcaagcggggcctgcg 303695553
Query: 669 gcccaacggcatcatcgtcatcaaagacaacatggcccaggagggcgtgatcctggacga 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695554 gcccaacggcatcatcgtcatcaaagacaacatggcccaggagggcgtgatcctggacga 303695613
Query: 729 cgtggacagcagcgtgtgccgggacctcgacgtggtgcacaggatcatccgccgcgcggg 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695614 cgtggacagcagcgtgtgccgggacctcgacgtggtgcacaggatcatccgccgcgcggg 303695673
Query: 789 cctcagcctcctggcccaggagcggcaggagaacctcccggacgagatctaccacgtcta 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695674 cctcagcctcctggcccaggagcggcaggagaacctcccggacgagatctaccacgtcta 303695733
Query: 849 cagcttagccctcagatgagcggggccggcgggagcgcgggaccagtnnnnnnnnnnnna 908
||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 303695734 cagcttagccctcagatgagcggggccggcgggagcgcgggaccagtgggggcgggggga 303695793
Query: 909 actggcagtcgggcgaggcccggaagctccacgtcgacggttcgggagtgtcaggcgagg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695794 actggcagtcgggcgaggcccggaagctccacgtcgacggttcgggagtgtcaggcgagg 303695853
Query: 969 ccactaaatatacctgtgtctgccgtccactcgctagagagactcttttacaaaaggcag 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303695854 ccactaaatatacctgtgtctgccgtccactcgctagagagactcttttacaaaaggcag 303695913
Query: 1029 aacgggacccgggcggggagggctgccggccgggaggctgaatgctggc 1077
|||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 303695914 aacgggacccgggcggggagggctgccggcggggaggctggaggctggc 303695962
Score = 498 bits (251), Expect = e-138
Identities = 254/255 (99%)
Strand = Plus / Plus
Query: 357 ggaaggccccaacaagacggggacctcgtgtgccctggactgcggagccggcatcgggag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 303694461 ggaaggccccaacaagacggggacctcgtgtgccctggactgcggagccggcatcggaag 303694520
Query: 417 gatcaccaagcggctgctcttgcctctctttggcgtggtggacatggtggatgtgacgga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303694521 gatcaccaagcggctgctcttgcctctctttggcgtggtggacatggtggatgtgacgga 303694580
Query: 477 ggacttcctggtcaaggcgaagagctacctgggcgaggagggcaagagagtgaggaacta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303694581 ggacttcctggtcaaggcgaagagctacctgggcgaggagggcaagagagtgaggaacta 303694640
Query: 537 cttctgctgtggcctccaggacttcagccccgagccgcactcttacgacgtgatctggat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303694641 cttctgctgtggcctccaggacttcagccccgagccgcactcttacgacgtgatctggat 303694700
Query: 597 ccagtgggtgatagg 611
|||||||||||||||
Sbjct: 303694701 ccagtgggtgatagg 303694715
Score = 420 bits (212), Expect = e-115
Identities = 218/220 (99%)
Strand = Plus / Plus
Query: 144 ggaggcgccctgctgagcttggtgcctgagcataggcgtggctggtgacagcatgacgag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303693490 ggaggcgccctgctgagcttggtgcctgagcataggcgtggctggtgacagcatgacgag 303693549
Query: 204 cgaggtgattgaagatgagaagcaattctattccaaggccgagacgtactggaaggaggt 263
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303693550 tgaggtgattgaagatgagaagcaattctattccaaggccgagacgtactggaaggaggt 303693609
Query: 264 cccgcccaccgtggacggcatgctcggggggtatggccacatctccagcatcgacatcaa 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303693610 cccgcccaccgtggacggcatgctcggggggtatggccacatctccagcatcgacatcaa 303693669
Query: 324 cagctcccggaagttcctgcagaggtttctgagggaaggc 363
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 303693670 cagctcccggaagttcctgcagaggtttctgagggtaggc 303693709
Score = 272 bits (137), Expect = 4e-70
Identities = 143/145 (98%)
Strand = Plus / Plus
Query: 1 ggcggtgtgcgccgcgaggtgtcgcttctgacctgggtctgacggagccggctgtgggct 60
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 303687346 ggcggtgcgcgccgcgaggtgtcgcttctgacctgggtctgacggagccggccgtgggct 303687405
Query: 61 tctggggtgctcacccctgccgccgcctccttcccttcctgtttctcgtcctcttctccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303687406 tctggggtgctcacccctgccgccgcctccttcccttcctgtttctcgtcctcttctccc 303687465
Query: 121 gggtcccgggagcccccgcccgggg 145
|||||||||||||||||||||||||
Sbjct: 303687466 gggtcccgggagcccccgcccgggg 303687490
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 23,478,127
Number of extensions: 164
Number of successful extensions: 164
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 5
Length of query: 1079
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1058
Effective length of database: 2,808,413,156
Effective search space: 2971301119048
Effective search space used: 2971301119048
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)