Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001069913.1| intraflagellar transport protein 27 homolog ... 241 1e-68
Alignment gi|XP_589411.3| PREDICTED: putative GTP-binding protein RAY-lik... 238 1e-67
Alignment gi|XP_002692795.1| PREDICTED: putative GTP-binding protein RAY-... 236 4e-67
Alignment gi|NP_001094599.1| ras-related protein Rab-6B [Bos taurus]. 76 3e-14
Alignment gi|NP_001092564.1| ras-related protein Rab-7L1 [Bos taurus]. 76 5e-14
Alignment gi|XP_002693501.1| PREDICTED: RAB6A, member RAS oncogene family... 75 6e-14
Alignment gi|XP_001252030.1| PREDICTED: RAB6A, member RAS oncogene family... 75 6e-14
Alignment gi|NP_001180044.1| ras-related protein Rab-6A [Bos taurus]. 74 2e-13
Alignment gi|XP_002693500.1| PREDICTED: RAB6A, member RAS oncogene family... 74 2e-13
Alignment gi|NP_001179922.1| RAB33A, member RAS oncogene family [Bos taur... 71 1e-12
>ref|NP_001069913.1| intraflagellar transport protein 27 homolog [Bos taurus].
Length = 186
Score = 241 bits (616), Expect(2) = 1e-68
Identities = 119/127 (93%), Positives = 121/127 (95%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDP VGKTALAQ+FRSDGA FQKNYTLTTGVDLVVKTVPVPDT DSVEL
Sbjct: 1 MVKLAAKCILAGDPTVGKTALAQLFRSDGAHFQKNYTLTTGVDLVVKTVPVPDTGDSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWESP+VLCLVYDVTNEQSFTNCSKWLEKARSQIPG LPGVL
Sbjct: 61 FIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFTNCSKWLEKARSQIPGTTLPGVL 120
Query: 765 VGNKTDL 785
VGNKTDL
Sbjct: 121 VGNKTDL 127
Score = 37.4 bits (85), Expect(2) = 1e-68
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ NYEAPF
Sbjct: 147 LECFETSVKEMENYEAPF 164
>ref|XP_589411.3| PREDICTED: putative GTP-binding protein RAY-like [Bos taurus].
Length = 186
Score = 238 bits (608), Expect(2) = 1e-67
Identities = 118/127 (92%), Positives = 120/127 (94%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDP VGKTALAQ+FRSDGA FQKNYTLTTGVDLVVKTV VPDT DSVEL
Sbjct: 1 MVKLAAKCILAGDPTVGKTALAQLFRSDGAHFQKNYTLTTGVDLVVKTVAVPDTGDSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWESP+VLCLVYDVTNEQSFTNCSKWLEKARSQIPG LPGVL
Sbjct: 61 FIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFTNCSKWLEKARSQIPGTTLPGVL 120
Query: 765 VGNKTDL 785
VGNKTDL
Sbjct: 121 VGNKTDL 127
Score = 37.4 bits (85), Expect(2) = 1e-67
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ NYEAPF
Sbjct: 147 LECFETSVKEMENYEAPF 164
>ref|XP_002692795.1| PREDICTED: putative GTP-binding protein RAY-like [Bos taurus].
Length = 186
Score = 236 bits (603), Expect(2) = 4e-67
Identities = 117/127 (92%), Positives = 119/127 (93%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDP VGKTALAQ+F SDGA FQKNYTLTTGVDLVVKTV VPDT DSVEL
Sbjct: 1 MVKLAAKCILAGDPTVGKTALAQLFHSDGAHFQKNYTLTTGVDLVVKTVAVPDTGDSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWESP+VLCLVYDVTNEQSFTNCSKWLEKARSQIPG LPGVL
Sbjct: 61 FIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFTNCSKWLEKARSQIPGTTLPGVL 120
Query: 765 VGNKTDL 785
VGNKTDL
Sbjct: 121 VGNKTDL 127
Score = 37.4 bits (85), Expect(2) = 4e-67
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ NYEAPF
Sbjct: 147 LECFETSVKEMENYEAPF 164
>ref|NP_001094599.1| ras-related protein Rab-6B [Bos taurus].
Length = 208
Score = 76.3 bits (186), Expect = 3e-14
Identities = 45/121 (37%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF SKW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_001092564.1| ras-related protein Rab-7L1 [Bos taurus].
Length = 203
Score = 75.9 bits (185), Expect = 5e-14
Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D F K+Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FSKHYKSTVGVDFALKVLQWSDS-EMVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N KW + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQKWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|XP_002693501.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 2 [Bos
taurus].
Length = 208
Score = 75.5 bits (184), Expect = 6e-14
Identities = 44/121 (36%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|XP_001252030.1| PREDICTED: RAB6A, member RAS oncogene family isoform 1 [Bos
taurus].
Length = 208
Score = 75.5 bits (184), Expect = 6e-14
Identities = 44/121 (36%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_001180044.1| ras-related protein Rab-6A [Bos taurus].
Length = 208
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ + +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|XP_002693500.1| PREDICTED: RAB6A, member RAS oncogene family-like isoform 1 [Bos
taurus].
Length = 208
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ + +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_001179922.1| RAB33A, member RAS oncogene family [Bos taurus].
Length = 237
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K I+ GD VGKT L FR G F T GVD KTV + + +++ + D+A
Sbjct: 38 KIIVIGDSNVGKTCLT--FRFCGGTFPDKTEATIGVDFREKTVEIE--GEKIKVQVWDTA 93
Query: 603 GKELFSE-MLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKT 779
G+E F + M++ + + + VYDVT SFTN W+++ +P VLVGNK
Sbjct: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
Query: 780 DL 785
DL
Sbjct: 154 DL 155
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 36,966,497
Number of extensions: 1132339
Number of successful extensions: 5620
Number of sequences better than 1.0e-05: 103
Number of HSP's gapped: 5539
Number of HSP's successfully gapped: 106
Length of query: 301
Length of database: 17,681,374
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,306,398
Effective search space: 2846973202
Effective search space used: 2846973202
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_531746.2| PREDICTED: similar to Putative GTP-binding prot... 243 6e-69
Alignment gi|XP_536104.2| PREDICTED: similar to RAB7, member RAS oncogene... 75 8e-14
Alignment gi|XP_856658.1| PREDICTED: similar to Ras-related protein Rab-7... 75 8e-14
Alignment gi|XP_850271.1| PREDICTED: similar to RAB6A, member RAS oncogen... 75 8e-14
Alignment gi|XP_854340.1| PREDICTED: similar to Ras-related protein Rab-3... 71 1e-12
Alignment gi|NP_001003153.1| ras-related protein Rab-1A [Canis lupus fami... 71 2e-12
Alignment gi|NP_001003277.2| ras-related protein Rab-10 [Canis lupus fami... 70 2e-12
Alignment gi|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogen... 70 2e-12
Alignment gi|XP_865958.1| PREDICTED: similar to RAB1B, member RAS oncogen... 70 2e-12
Alignment gi|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogen... 70 2e-12
>ref|XP_531746.2| PREDICTED: similar to Putative GTP-binding protein RAY-like
(Rab-like protein 4) [Canis familiaris].
Length = 340
Score = 243 bits (619), Expect(2) = 6e-69
Identities = 121/133 (90%), Positives = 125/133 (93%)
Frame = +3
Query: 387 RR*LVTMVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDT 566
R+ LVTMVKLAAKCILAGD AVGKTALAQIFRSDGA FQKNYTLTTGVDLVVKTVPVPDT
Sbjct: 149 RKWLVTMVKLAAKCILAGDSAVGKTALAQIFRSDGAHFQKNYTLTTGVDLVVKTVPVPDT 208
Query: 567 ADSVELFILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGI 746
DSVELFI DSAGKELFSEMLDKLWESP+VLCLVYDVTNEQSF NC KWLEKARSQ+PG
Sbjct: 209 GDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEQSFANCGKWLEKARSQMPGA 268
Query: 747 NLPGVLVGNKTDL 785
+LPGVLVGNKTDL
Sbjct: 269 SLPGVLVGNKTDL 281
Score = 37.4 bits (85), Expect(2) = 6e-69
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ NYEAPF
Sbjct: 301 LECFETSVKEMENYEAPF 318
>ref|XP_536104.2| PREDICTED: similar to RAB7, member RAS oncogene family-like 1
isoform 1 [Canis familiaris].
Length = 203
Score = 75.1 bits (183), Expect = 8e-14
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D FQ++Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FQQHYKSTVGVDFALKVLQWSDS-EMVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|XP_856658.1| PREDICTED: similar to Ras-related protein Rab-7L1 (Rab-7 like
protein 1) isoform 2 [Canis familiaris].
Length = 167
Score = 75.1 bits (183), Expect = 8e-14
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D FQ++Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FQQHYKSTVGVDFALKVLQWSDS-EMVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACIIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|XP_850271.1| PREDICTED: similar to RAB6A, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 208
Score = 75.1 bits (183), Expect = 8e-14
Identities = 43/121 (35%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|XP_854340.1| PREDICTED: similar to Ras-related protein Rab-33A (Small
GTP-binding protein S10) [Canis familiaris].
Length = 237
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K I+ GD VGKT L FR G F T GVD KTV + + +++ + D+A
Sbjct: 38 KIIVIGDSNVGKTCLT--FRFCGGTFPDKTEATIGVDFREKTVEIE--GEKIKVQVWDTA 93
Query: 603 GKELFSE-MLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKT 779
G+E F + M++ + + + VYDVT SFTN W+++ +P VLVGNK
Sbjct: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
Query: 780 DL 785
DL
Sbjct: 154 DL 155
>ref|NP_001003153.1| ras-related protein Rab-1A [Canis lupus familiaris].
Length = 205
Score = 70.9 bits (172), Expect = 2e-12
Identities = 41/121 (33%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 68
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++SF N +WL++ + N+ +LVGNK D
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNKCD 127
Query: 783 L 785
L
Sbjct: 128 L 128
>ref|NP_001003277.2| ras-related protein Rab-10 [Canis lupus familiaris].
Length = 200
Score = 70.5 bits (171), Expect = 2e-12
Identities = 43/124 (34%), Positives = 65/124 (52%)
Frame = +3
Query: 414 LAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFIL 593
L K +L GD VGKT + +FR F + T G+D +KTV + ++L I
Sbjct: 8 LLFKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVELQ--GKKIKLQIW 63
Query: 594 DSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGN 773
D+AG+E F + + + LVYD+TN +SF N SKWL + ++ +L+GN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI-DEHANEDVERMLLGN 122
Query: 774 KTDL 785
K D+
Sbjct: 123 KCDM 126
>ref|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 5
[Canis familiaris].
Length = 201
Score = 70.5 bits (171), Expect = 2e-12
Identities = 40/121 (33%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++S+ N +WL++ + N+ +LVGNK+D
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSD 124
Query: 783 L 785
L
Sbjct: 125 L 125
>ref|XP_865958.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 4
[Canis familiaris].
Length = 130
Score = 70.5 bits (171), Expect = 2e-12
Identities = 40/121 (33%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++S+ N +WL++ + N+ +LVGNK+D
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSD 124
Query: 783 L 785
L
Sbjct: 125 L 125
>ref|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 201
Score = 70.5 bits (171), Expect = 2e-12
Identities = 40/121 (33%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++S+ N +WL++ + N+ +LVGNK+D
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSD 124
Query: 783 L 785
L
Sbjct: 125 L 125
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 38,490,775
Number of extensions: 1163700
Number of successful extensions: 6259
Number of sequences better than 1.0e-05: 88
Number of HSP's gapped: 6166
Number of HSP's successfully gapped: 89
Length of query: 301
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 199
Effective length of database: 15,474,232
Effective search space: 3079372168
Effective search space used: 3079372168
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003126110.2| PREDICTED: intraflagellar transport protein ... 252 4e-68
Alignment gi|XP_003132476.1| PREDICTED: ras-related protein Rab-6B-like [... 76 2e-14
Alignment gi|XP_003357449.1| PREDICTED: ras-related protein Rab-7L1-like ... 74 1e-13
Alignment gi|XP_003357448.1| PREDICTED: ras-related protein Rab-7L1-like ... 74 1e-13
Alignment gi|XP_003357447.1| PREDICTED: ras-related protein Rab-7L1-like ... 74 1e-13
Alignment gi|NP_001230202.1| ras-related protein Rab-6A [Sus scrofa]. 74 1e-13
Alignment gi|NP_001116649.1| ras-related protein Rab-33A [Sus scrofa]. 71 7e-13
Alignment gi|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrof... 70 1e-12
Alignment gi|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus s... 70 2e-12
Alignment gi|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa]. 69 3e-12
>ref|XP_003126110.2| PREDICTED: intraflagellar transport protein 27 homolog [Sus
scrofa].
Length = 209
Score = 252 bits (643), Expect(2) = 4e-68
Identities = 129/146 (88%), Positives = 129/146 (88%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL
Sbjct: 1 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FILDSAGKELFSEMLDKLWESP VLCLVYDVTNEQSFTNCSKWLEKARSQIPGI LPGVL
Sbjct: 61 FILDSAGKELFSEMLDKLWESPGVLCLVYDVTNEQSFTNCSKWLEKARSQIPGITLPGVL 120
Query: 765 VGNKTDLXXXXXXXXXXXXXXXLSQG 842
VGNKTDL LSQG
Sbjct: 121 VGNKTDLAGRRAVESAQARAWALSQG 146
Score = 24.6 bits (52), Expect(2) = 4e-68
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +1
Query: 868 KEIINYEAPFPS 903
KE+INYEAPF S
Sbjct: 178 KEMINYEAPFHS 189
>ref|XP_003132476.1| PREDICTED: ras-related protein Rab-6B-like [Sus scrofa].
Length = 208
Score = 76.3 bits (186), Expect = 2e-14
Identities = 45/121 (37%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF SKW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|XP_003357449.1| PREDICTED: ras-related protein Rab-7L1-like isoform 3 [Sus scrofa].
Length = 203
Score = 73.9 bits (180), Expect = 1e-13
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D F K+Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FSKHYKSTVGVDFALKVLQWSDS-EVVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|XP_003357448.1| PREDICTED: ras-related protein Rab-7L1-like isoform 2 [Sus scrofa].
Length = 203
Score = 73.9 bits (180), Expect = 1e-13
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D F K+Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FSKHYKSTVGVDFALKVLQWSDS-EVVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|XP_003357447.1| PREDICTED: ras-related protein Rab-7L1-like isoform 1 [Sus scrofa].
Length = 203
Score = 73.9 bits (180), Expect = 1e-13
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D F K+Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FSKHYKSTVGVDFALKVLQWSDS-EVVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIP---GINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGGPVPCLLLAN 125
Query: 774 KTDL 785
K DL
Sbjct: 126 KCDL 129
>ref|NP_001230202.1| ras-related protein Rab-6A [Sus scrofa].
Length = 208
Score = 73.6 bits (179), Expect = 1e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ + +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_001116649.1| ras-related protein Rab-33A [Sus scrofa].
Length = 237
Score = 71.2 bits (173), Expect = 7e-13
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K I+ GD VGKT L FR G F T GVD KTV + + +++ + D+A
Sbjct: 38 KIIVIGDSNVGKTCLT--FRFCGGTFPDKTEATIGVDFREKTVEIE--GEKIKVQVWDTA 93
Query: 603 GKELFSE-MLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKT 779
G+E F + M++ + + + VYDVT SFTN W+++ +P VLVGNK
Sbjct: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
Query: 780 DL 785
DL
Sbjct: 154 DL 155
>ref|NP_001229989.1| RAB10, member RAS oncogene family [Sus scrofa].
Length = 200
Score = 70.5 bits (171), Expect = 1e-12
Identities = 43/124 (34%), Positives = 65/124 (52%)
Frame = +3
Query: 414 LAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFIL 593
L K +L GD VGKT + +FR F + T G+D +KTV + ++L I
Sbjct: 8 LLFKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVELQ--GKKIKLQIW 63
Query: 594 DSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGN 773
D+AG+E F + + + LVYD+TN +SF N SKWL + ++ +L+GN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI-DEHANEDVERMLLGN 122
Query: 774 KTDL 785
K D+
Sbjct: 123 KCDM 126
>ref|XP_001927266.2| PREDICTED: ras-related protein Rab-13 [Sus scrofa].
Length = 203
Score = 69.7 bits (169), Expect = 2e-12
Identities = 40/121 (33%), Positives = 63/121 (52%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGKT L F D F Y T G+D ++TV + ++L + D+A
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDN--FNNTYISTIGIDFKIRTVDIE--GKKIKLQVWDTA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + LVYD+T+E+SF N W+ K+ + + +L+GNK D
Sbjct: 66 GQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWM-KSIKENASAGVERLLLGNKCD 124
Query: 783 L 785
+
Sbjct: 125 M 125
>ref|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa].
Length = 205
Score = 69.3 bits (168), Expect = 3e-12
Identities = 41/121 (33%), Positives = 67/121 (55%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 68
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT++ SF N +WL++ + N+ +LVGNK D
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEI-DRYASENVNKLLVGNKCD 127
Query: 783 L 785
L
Sbjct: 128 L 128
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 23,904,879
Number of extensions: 733064
Number of successful extensions: 3898
Number of sequences better than 1.0e-05: 78
Number of HSP's gapped: 3829
Number of HSP's successfully gapped: 79
Length of query: 301
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 203
Effective length of database: 8,904,026
Effective search space: 1807517278
Effective search space used: 1807517278
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_080207.1| intraflagellar transport protein 27 homolog [Mu... 224 7e-59
Alignment gi|NP_776142.1| ras-related protein Rab-6B [Mus musculus]. 76 3e-14
Alignment gi|NP_077249.1| ras-related protein Rab-6A isoform 2 [Mus muscu... 75 5e-14
Alignment gi|NP_659124.2| ras-related protein Rab-7L1 [Mus musculus]. 75 5e-14
Alignment gi|NP_001157135.1| ras-related protein Rab-6A isoform 1 [Mus mu... 74 2e-13
Alignment gi|NP_035358.1| ras-related protein Rab-33A [Mus musculus]. 71 1e-12
Alignment gi|NP_033022.1| ras-related protein Rab-1A [Mus musculus]. 71 1e-12
Alignment gi|NP_057885.1| ras-related protein Rab-10 [Mus musculus]. 70 2e-12
Alignment gi|NP_083852.1| ras-related protein Rab-1B [Mus musculus]. 70 2e-12
Alignment gi|NP_083770.2| ras-related protein Rab-30 [Mus musculus]. 70 2e-12
>ref|NP_080207.1| intraflagellar transport protein 27 homolog [Mus musculus].
Length = 186
Score = 224 bits (571), Expect = 7e-59
Identities = 117/159 (73%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDPAVGKTAL Q+FRSDG FQKNYTLTTGVDLVVKTVPV DT DSVEL
Sbjct: 1 MVKLAAKCILAGDPAVGKTALVQMFRSDGTHFQKNYTLTTGVDLVVKTVPVLDTNDSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWE+P+VLCLVYDVTNEQSF +C+KWLEK RSQ GI+LPGVL
Sbjct: 61 FIFDSAGKELFSEMLDKLWENPNVLCLVYDVTNEQSFISCTKWLEKVRSQTSGISLPGVL 120
Query: 765 VGNKTDLXXXXXXXXXXXXXXXLSQGPGMF-*NIRERNN 878
VG KTDL LSQG F +++E +N
Sbjct: 121 VGTKTDLAGRQTVDSAQAQVWALSQGLEFFETSVKEMDN 159
>ref|NP_776142.1| ras-related protein Rab-6B [Mus musculus].
Length = 208
Score = 76.3 bits (186), Expect = 3e-14
Identities = 45/121 (37%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF SKW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_077249.1| ras-related protein Rab-6A isoform 2 [Mus musculus].
Length = 208
Score = 75.5 bits (184), Expect = 5e-14
Identities = 44/121 (36%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_659124.2| ras-related protein Rab-7L1 [Mus musculus].
Length = 204
Score = 75.5 bits (184), Expect = 5e-14
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 3/124 (2%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K ++ GD AVGKT+L Q + D F K+Y T GVD +K + D+ + V L + D A
Sbjct: 9 KVLVVGDAAVGKTSLVQRYSQDS--FSKHYKSTVGVDFALKVLQWSDS-EMVRLQLWDIA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQI---PGINLPGVLVGN 773
G+E F+ M + S +++DVTN +F+N +W + S++ G +P +L+ N
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 774 KTDL 785
K+DL
Sbjct: 126 KSDL 129
>ref|NP_001157135.1| ras-related protein Rab-6A isoform 1 [Mus musculus].
Length = 208
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ + +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_035358.1| ras-related protein Rab-33A [Mus musculus].
Length = 237
Score = 71.2 bits (173), Expect = 1e-12
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K I+ GD VGKT L FR G F T GVD KTV + + +++ + D+A
Sbjct: 38 KIIVIGDSNVGKTCLT--FRFCGGTFPDKTEATIGVDFREKTVEIE--GEKIKVQVWDTA 93
Query: 603 GKELFSE-MLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKT 779
G+E F + M++ + + + VYDVT SFTN W+++ +P VLVGNK
Sbjct: 94 GQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQECNGHAVPPLVPKVLVGNKC 153
Query: 780 DL 785
DL
Sbjct: 154 DL 155
>ref|NP_033022.1| ras-related protein Rab-1A [Mus musculus].
Length = 205
Score = 70.9 bits (172), Expect = 1e-12
Identities = 41/121 (33%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 68
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++SF N +WL++ + N+ +LVGNK D
Sbjct: 69 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI-DRYASENVNKLLVGNKCD 127
Query: 783 L 785
L
Sbjct: 128 L 128
>ref|NP_057885.1| ras-related protein Rab-10 [Mus musculus].
Length = 200
Score = 70.5 bits (171), Expect = 2e-12
Identities = 43/124 (34%), Positives = 65/124 (52%)
Frame = +3
Query: 414 LAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFIL 593
L K +L GD VGKT + +FR F + T G+D +KTV + ++L I
Sbjct: 8 LLFKLLLIGDSGVGKTCV--LFRFSDDAFNTTFISTIGIDFKIKTVELQ--GKKIKLQIW 63
Query: 594 DSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGN 773
D+AG+E F + + + LVYD+TN +SF N SKWL + ++ +L+GN
Sbjct: 64 DTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNI-DEHANEDVERMLLGN 122
Query: 774 KTDL 785
K D+
Sbjct: 123 KCDM 126
>ref|NP_083852.1| ras-related protein Rab-1B [Mus musculus].
Length = 201
Score = 70.5 bits (171), Expect = 2e-12
Identities = 40/121 (33%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD VGK+ L F D + ++Y T GVD ++T+ + +++L I D+A
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADD--TYTESYISTIGVDFKIRTIELD--GKTIKLQIWDTA 65
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + + +VYDVT+++S+ N +WL++ + N+ +LVGNK+D
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEI-DRYASENVNKLLVGNKSD 124
Query: 783 L 785
L
Sbjct: 125 L 125
>ref|NP_083770.2| ras-related protein Rab-30 [Mus musculus].
Length = 203
Score = 70.1 bits (170), Expect = 2e-12
Identities = 45/121 (37%), Positives = 63/121 (52%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L G+ VGKT L + F F T GVD ++KTV + + V+L I D+A
Sbjct: 11 KIVLIGNAGVGKTCLVRRFTQ--GLFPPGQGATIGVDFMIKTVEI--NGEKVKLQIWDTA 66
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + S + L L YD+T E+SF +WL + Q + VLVGNK D
Sbjct: 67 GQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI-EQYASNKVITVLVGNKID 125
Query: 783 L 785
L
Sbjct: 126 L 126
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 31,732,306
Number of extensions: 938274
Number of successful extensions: 4381
Number of sequences better than 1.0e-05: 97
Number of HSP's gapped: 4284
Number of HSP's successfully gapped: 97
Length of query: 301
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 200
Effective length of database: 12,583,923
Effective search space: 2516784600
Effective search space used: 2516784600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001171172.1| intraflagellar transport protein 27 homolog ... 238 4e-67
Alignment gi|NP_006851.1| intraflagellar transport protein 27 homolog iso... 231 5e-65
Alignment gi|NP_001171173.1| intraflagellar transport protein 27 homolog ... 162 1e-44
Alignment gi|NP_057661.3| ras-related protein Rab-6B [Homo sapiens]. 76 4e-14
Alignment gi|NP_942599.1| ras-related protein Rab-6A isoform b [Homo sapi... 75 6e-14
Alignment gi|NP_002860.2| ras-related protein Rab-6A isoform a [Homo sapi... 74 2e-13
Alignment gi|NP_001191815.1| ras-related protein Rab-43 isoform a [Homo s... 74 2e-13
Alignment gi|NP_001191814.1| ras-related protein Rab-43 isoform a [Homo s... 74 2e-13
Alignment gi|NP_001191813.1| ras-related protein Rab-43 isoform a [Homo s... 74 2e-13
Alignment gi|NP_001191812.1| ras-related protein Rab-43 isoform a [Homo s... 74 2e-13
>ref|NP_001171172.1| intraflagellar transport protein 27 homolog isoform 1 [Homo
sapiens].
Length = 186
Score = 238 bits (607), Expect(2) = 4e-67
Identities = 117/127 (92%), Positives = 122/127 (96%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILAGDPAVGKTALAQIFRSDGA FQK+YTLTTG+DLVVKTVPVPDT DSVEL
Sbjct: 1 MVKLAAKCILAGDPAVGKTALAQIFRSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVEL 60
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWESP+VLCLVYDVTNE+SF NCSKWLEKARSQ PGI+LPGVL
Sbjct: 61 FIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVL 120
Query: 765 VGNKTDL 785
VGNKTDL
Sbjct: 121 VGNKTDL 127
Score = 35.8 bits (81), Expect(2) = 4e-67
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ N+EAPF
Sbjct: 147 LECFETSVKEMENFEAPF 164
>ref|NP_006851.1| intraflagellar transport protein 27 homolog isoform 2 [Homo
sapiens].
Length = 185
Score = 231 bits (589), Expect(2) = 5e-65
Identities = 116/127 (91%), Positives = 121/127 (95%)
Frame = +3
Query: 405 MVKLAAKCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVEL 584
MVKLAAKCILA DPAVGKTALAQIFRSDGA FQK+YTLTTG+DLVVKTVPVPDT DSVEL
Sbjct: 1 MVKLAAKCILA-DPAVGKTALAQIFRSDGAHFQKSYTLTTGMDLVVKTVPVPDTGDSVEL 59
Query: 585 FILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVL 764
FI DSAGKELFSEMLDKLWESP+VLCLVYDVTNE+SF NCSKWLEKARSQ PGI+LPGVL
Sbjct: 60 FIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVL 119
Query: 765 VGNKTDL 785
VGNKTDL
Sbjct: 120 VGNKTDL 126
Score = 35.8 bits (81), Expect(2) = 5e-65
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ N+EAPF
Sbjct: 146 LECFETSVKEMENFEAPF 163
>ref|NP_001171173.1| intraflagellar transport protein 27 homolog isoform 3 [Homo
sapiens].
Length = 145
Score = 162 bits (411), Expect(2) = 1e-44
Identities = 78/86 (90%), Positives = 82/86 (95%)
Frame = +3
Query: 528 VDLVVKTVPVPDTADSVELFILDSAGKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCS 707
+DLVVKTVPVPDT DSVELFI DSAGKELFSEMLDKLWESP+VLCLVYDVTNE+SF NCS
Sbjct: 1 MDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCS 60
Query: 708 KWLEKARSQIPGINLPGVLVGNKTDL 785
KWLEKARSQ PGI+LPGVLVGNKTDL
Sbjct: 61 KWLEKARSQAPGISLPGVLVGNKTDL 86
Score = 35.8 bits (81), Expect(2) = 1e-44
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 844 LECFETSVKEIINYEAPF 897
LECFETSVKE+ N+EAPF
Sbjct: 106 LECFETSVKEMENFEAPF 123
>ref|NP_057661.3| ras-related protein Rab-6B [Homo sapiens].
Length = 208
Score = 76.3 bits (186), Expect = 4e-14
Identities = 45/121 (37%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF SKW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_942599.1| ras-related protein Rab-6A isoform b [Homo sapiens].
Length = 208
Score = 75.5 bits (184), Expect = 6e-14
Identities = 44/121 (36%), Positives = 69/121 (57%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D +V L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ +V +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_002860.2| ras-related protein Rab-6A isoform a [Homo sapiens].
Length = 208
Score = 73.6 bits (179), Expect = 2e-13
Identities = 42/121 (34%), Positives = 68/121 (56%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K + G+ +VGKT+L F D F Y T G+D + KT+ + D ++ L + D+A
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDS--FDNTYQATIGIDFLSKTMYLEDR--TIRLQLWDTA 70
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F ++ + +VYD+TN SF +KW++ R++ G ++ +LVGNKTD
Sbjct: 71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTD 129
Query: 783 L 785
L
Sbjct: 130 L 130
>ref|NP_001191815.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 73.6 bits (179), Expect = 2e-13
Identities = 43/121 (35%), Positives = 66/121 (54%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD +VGKT + Q F++ F + T GVD +KT+ + V+L I D+A
Sbjct: 20 KLVLVGDASVGKTCVVQRFKTGA--FSERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDTA 75
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + S + L YD+T SF + W+E R + G N+ +L+GNK+D
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-KYAGSNIVQLLIGNKSD 134
Query: 783 L 785
L
Sbjct: 135 L 135
>ref|NP_001191814.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 73.6 bits (179), Expect = 2e-13
Identities = 43/121 (35%), Positives = 66/121 (54%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD +VGKT + Q F++ F + T GVD +KT+ + V+L I D+A
Sbjct: 20 KLVLVGDASVGKTCVVQRFKTGA--FSERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDTA 75
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + S + L YD+T SF + W+E R + G N+ +L+GNK+D
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-KYAGSNIVQLLIGNKSD 134
Query: 783 L 785
L
Sbjct: 135 L 135
>ref|NP_001191813.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 73.6 bits (179), Expect = 2e-13
Identities = 43/121 (35%), Positives = 66/121 (54%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD +VGKT + Q F++ F + T GVD +KT+ + V+L I D+A
Sbjct: 20 KLVLVGDASVGKTCVVQRFKTGA--FSERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDTA 75
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + S + L YD+T SF + W+E R + G N+ +L+GNK+D
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-KYAGSNIVQLLIGNKSD 134
Query: 783 L 785
L
Sbjct: 135 L 135
>ref|NP_001191812.1| ras-related protein Rab-43 isoform a [Homo sapiens].
Length = 212
Score = 73.6 bits (179), Expect = 2e-13
Identities = 43/121 (35%), Positives = 66/121 (54%)
Frame = +3
Query: 423 KCILAGDPAVGKTALAQIFRSDGAQFQKNYTLTTGVDLVVKTVPVPDTADSVELFILDSA 602
K +L GD +VGKT + Q F++ F + T GVD +KT+ + V+L I D+A
Sbjct: 20 KLVLVGDASVGKTCVVQRFKTGA--FSERQGSTIGVDFTMKTLEIQ--GKRVKLQIWDTA 75
Query: 603 GKELFSEMLDKLWESPSVLCLVYDVTNEQSFTNCSKWLEKARSQIPGINLPGVLVGNKTD 782
G+E F + + S + L YD+T SF + W+E R + G N+ +L+GNK+D
Sbjct: 76 GQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVR-KYAGSNIVQLLIGNKSD 134
Query: 783 L 785
L
Sbjct: 135 L 135
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 37,718,213
Number of extensions: 1137029
Number of successful extensions: 5911
Number of sequences better than 1.0e-05: 132
Number of HSP's gapped: 5780
Number of HSP's successfully gapped: 135
Length of query: 301
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 199
Effective length of database: 14,934,836
Effective search space: 2972032364
Effective search space used: 2972032364
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008741
(903 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr05 870 0.0
>Sscrofa_Chr05
|| Length = 111506441
Score = 870 bits (439), Expect = 0.0
Identities = 439/439 (100%)
Strand = Plus / Plus
Query: 1 ccagcaaggaggaggaggaggaaatagagaaggcggggcaggcggggcatggttgcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594346 ccagcaaggaggaggaggaggaaatagagaaggcggggcaggcggggcatggttgcccga 8594405
Query: 61 gaagcccatctgttgcggttctgggggcgggaaggttgctggatcactattcctgcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594406 gaagcccatctgttgcggttctgggggcgggaaggttgctggatcactattcctgcttcc 8594465
Query: 121 cactaactggagctgtgcctgggacgggatccgaatcgcctcgctggcatcttccaggtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594466 cactaactggagctgtgcctgggacgggatccgaatcgcctcgctggcatcttccaggtt 8594525
Query: 181 actctctgagaccttgaacttggccccatctggcgatcctccgcgccctgccgcgaccct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594526 actctctgagaccttgaacttggccccatctggcgatcctccgcgccctgccgcgaccct 8594585
Query: 241 agtgcccgagaactgcccgcgggctgcccagagggtcgttgtccccaccgccgccacagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594586 agtgcccgagaactgcccgcgggctgcccagagggtcgttgtccccaccgccgccacagg 8594645
Query: 301 acccttcagcgccagccttccccactccccttcccaggcagggccccccaacgcctccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594646 acccttcagcgccagccttccccactccccttcccaggcagggccccccaacgcctccag 8594705
Query: 361 cagcctctcttccgctgtctggtccgcggaggtgattggttaccatggtgaagctggcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8594706 cagcctctcttccgctgtctggtccgcggaggtgattggttaccatggtgaagctggcag 8594765
Query: 421 cgaaatgcatcctggcagg 439
|||||||||||||||||||
Sbjct: 8594766 cgaaatgcatcctggcagg 8594784
Score = 224 bits (113), Expect = 7e-56
Identities = 119/121 (98%)
Strand = Plus / Plus
Query: 638 gtgggagagtcccagtgtcctgtgtctcgtctacgatgtgaccaatgaacagtccttcac 697
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8606072 gtgggagagtcccggtgtcctgtgtctcgtctacgatgtgaccaatgaacagtccttcac 8606131
Query: 698 caactgcagcaagtggctggagaaggctcggtcgcagattccagggatcaacctgccagg 757
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8606132 caactgcagcaagtggctggagaaggctcggtcgcagattccagggatcaccctgccagg 8606191
Query: 758 t 758
|
Sbjct: 8606192 t 8606192
Score = 184 bits (93), Expect = 6e-44
Identities = 110/113 (97%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 755 aggtgtgctggtggggaacaagacagacctggccggcaggcgagcggtggcgtcggctca 814
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 8607364 aggtgtgctggtggggaacaagacagacctggccggcaggcgagcggtggagtcggctca 8607423
Query: 815 ggcccgggcgtgggcgctgagccaggggcctggaatgttttgaaacatccgtg 867
|||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 8607424 ggcccgggcgtgggcgctgagcca-gggcctggaatg-tttgaaacatccgtg 8607474
Score = 149 bits (75), Expect = 3e-33
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 436 caggagacccagctgtgggcaaaaccgccctggcacagatcttccgcagcgacggagccc 495
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8602217 caggagacccagccgtgggcaaaaccgccctggcacagatcttccgcagcgacggagccc 8602276
Query: 496 aattccagaaaaactacaccctg 518
|||||||||| ||||||||||||
Sbjct: 8602277 aattccagaagaactacaccctg 8602299
Score = 123 bits (62), Expect = 2e-25
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 518 gacaacaggggtggatctggtggtgaagacagtgccagtcccggacacagcagacagtgt 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8602677 gacaacaggggtggatctggtggtgaagacagtgccagtcccggacacagcagacagtgt 8602736
Query: 578 gg 579
||
Sbjct: 8602737 gg 8602738
Score = 121 bits (61), Expect = 7e-25
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 578 ggaactcttcattcttgactcggccggcaaggagctgttttcggaaatgctggataaatt 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8604120 ggaactcttcattcttgactcggccggcaaggagctgttttcggaaatgctggataaatt 8604179
Query: 638 g 638
|
Sbjct: 8604180 g 8604180
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 25,173,574
Number of extensions: 451
Number of successful extensions: 451
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 6
Length of query: 903
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 882
Effective length of database: 2,808,413,156
Effective search space: 2477020403592
Effective search space used: 2477020403592
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)