Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039825.1| transcription elongation factor A protein 3 ... 522 e-148
Alignment gi|NP_001068797.1| transcription elongation factor A protein 2 ... 309 5e-84
Alignment gi|NP_001039390.1| transcription elongation factor A protein 1 ... 237 2e-62
Alignment gi|NP_001019643.2| transcription elongation factor A N-terminal... 117 4e-26
Alignment gi|XP_002700482.1| PREDICTED: TFIIS central domain-containing p... 108 1e-23
Alignment gi|XP_600169.2| PREDICTED: TFIIS central domain-containing prot... 108 1e-23
Alignment gi|NP_001179500.1| PHD finger protein 3 [Bos taurus]. 62 1e-09
Alignment gi|XP_002690024.1| PREDICTED: PHD finger protein 3 [Bos taurus]. 62 1e-09
>ref|NP_001039825.1| transcription elongation factor A protein 3 [Bos taurus].
Length = 349
Score = 522 bits (1344), Expect = e-148
Identities = 270/349 (77%), Positives = 277/349 (79%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MGQEEELLRIA+KLEKMVARK TEGALDLLKKL S +MSIQLLQTTRIGVAVNGVRKHCS
Sbjct: 1 MGQEEELLRIAKKLEKMVARKKTEGALDLLKKLGSWQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 302 DKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKK 481
+KEVV+LAKVLIRNWK+LLDSPA P LDCS WKPETSLSPPRKK
Sbjct: 61 NKEVVALAKVLIRNWKQLLDSPATPKGEKGEERVKAKKKEKGLDCSDWKPETSLSPPRKK 120
Query: 482 RMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAP 661
R+EEP MERSNSSKSK E VCLLAP
Sbjct: 121 RVEEPKDRRDSVDSKSSATSSPKRPSMERSNSSKSKAETPRTPSSPSSPTFAPSVCLLAP 180
Query: 662 CYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVR 841
CYLTGDSVRDKCVEMLS G+NCDKMASEIEDHIYQELKSTDMKYRNRVR
Sbjct: 181 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR 240
Query: 842 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 1021
SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
Sbjct: 241 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 300
Query: 1022 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 301 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 349
>ref|NP_001068797.1| transcription elongation factor A protein 2 [Bos taurus].
Length = 300
Score = 309 bits (791), Expect = 5e-84
Identities = 168/349 (48%), Positives = 221/349 (63%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MG+EEE+ RIAR+L+KMV +K+ EGA+DLL++L + +++ LLQ+TR+G++VN +RK S
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPVTLHLLQSTRVGMSVNALRKQSS 61
Query: 302 DKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKK 481
D+EVV+LAK LI++WK+LLD+ L SS K + P +K
Sbjct: 62 DEEVVTLAKSLIKSWKKLLDAS--------DAKARERRRGGSLPTSSSKEASEAQDPSRK 113
Query: 482 RMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAP 661
R E P R S+ + P
Sbjct: 114 RPELP-----------------------RMPSTPR-------------------ITTFPP 131
Query: 662 CYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVR 841
+T D+VR KC EML+ G +C+ +A +IE+ I++++ +TDMKY+NRVR
Sbjct: 132 VPVTCDAVRTKCREMLTAALQTDHDHVAIGADCECLAGQIEECIFRDVGNTDMKYKNRVR 191
Query: 842 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 1021
SR+SNLKD +NPGLRR VL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA+
Sbjct: 192 SRLSNLKDAKNPGLRRKVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMAR 251
Query: 1022 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
TGGT TDLF C KC+KKNCTY QVQTRS+DEPMTTFV+CNECGNRWKFC
Sbjct: 252 TGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 300
>ref|NP_001039390.1| transcription elongation factor A protein 1 [Bos taurus].
Length = 301
Score = 237 bits (604), Expect = 2e-62
Identities = 114/166 (68%), Positives = 133/166 (80%)
Frame = +2
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 255
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 256 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 101 bits (252), Expect = 2e-21
Identities = 46/80 (57%), Positives = 68/80 (85%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++RIA+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 EDEVIRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
Query: 311 VVSLAKVLIRNWKRLLDSPA 370
V SLAK LI++WK+LLD P+
Sbjct: 62 VTSLAKSLIKSWKKLLDGPS 81
>ref|NP_001019643.2| transcription elongation factor A N-terminal and central
domain-containing protein [Bos taurus].
Length = 378
Score = 117 bits (292), Expect = 4e-26
Identities = 64/171 (37%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR +C E+L +A EIE H++ KY+ +RS+++NLK
Sbjct: 200 VRARCTELLYEALTASSPSQPRAHVWSNLAQEIEAHVFALHPKNLQKYKTCIRSKVANLK 259
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN L++N+LSG +S AKMTA EMAS EL++LR + T+ A+REH + + GT T
Sbjct: 260 NPRNSHLQQNLLSGTMSPREFAKMTAMEMASQELKQLRASYTKSALREHYLPQVVEGTPT 319
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE M T+V+CNECG +W
Sbjct: 320 RKIKCERCEKFNCQVTVIPRGTLFLPSWVRNAGPDEEMMTYVICNECGEQW 370
>ref|XP_002700482.1| PREDICTED: TFIIS central domain-containing protein 1-like [Bos
taurus].
Length = 377
Score = 108 bits (270), Expect = 1e-23
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR +C E+L +A EIE H++ KY+ +RS+++NLK
Sbjct: 199 VRARCTELLYEALTASSPGQPRAHVWPNLAQEIEAHVFALHPKNLQKYKTCIRSKVANLK 258
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
P N L++N+LSG +S A+MTA EMAS EL++LR + + A+R+H + + GT T
Sbjct: 259 KPHNSHLQQNLLSGTMSPREFAEMTAMEMASQELKQLRASYMKSALRKHYLPQVVEGTPT 318
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE M T+V+CNECG +W
Sbjct: 319 RKIKCERCEKFNCQVTVIPRGTLFLPSWVRNAGPDEEMMTYVICNECGEQW 369
>ref|XP_600169.2| PREDICTED: TFIIS central domain-containing protein 1-like [Bos
taurus].
Length = 377
Score = 108 bits (270), Expect = 1e-23
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR +C E+L +A EIE H++ KY+ +RS+++NLK
Sbjct: 199 VRARCTELLYEALTASSPGQPRAHVWPNLAQEIEAHVFALHPKNLQKYKTCIRSKVANLK 258
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
P N L++N+LSG +S A+MTA EMAS EL++LR + + A+R+H + + GT T
Sbjct: 259 KPHNSHLQQNLLSGTMSPREFAEMTAMEMASQELKQLRASYMKSALRKHYLPQVVEGTPT 318
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE M T+V+CNECG +W
Sbjct: 319 RKIKCERCEKFNCQVTVIPRGTLFLPSWVRNAGPDEEMMTYVICNECGEQW 369
>ref|NP_001179500.1| PHD finger protein 3 [Bos taurus].
Length = 2025
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 949 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 1008
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 1009 ELASKELAAWRRRENRHTIEMIEKEQ 1034
>ref|XP_002690024.1| PREDICTED: PHD finger protein 3 [Bos taurus].
Length = 2025
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 949 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 1008
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 1009 ELASKELAAWRRRENRHTIEMIEKEQ 1034
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 47,925,576
Number of extensions: 1134556
Number of successful extensions: 4172
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4159
Number of HSP's successfully gapped: 10
Length of query: 505
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,140,958
Effective search space: 5628101284
Effective search space used: 5628101284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_535363.2| PREDICTED: similar to Transcription elongation ... 523 e-148
Alignment gi|XP_535071.2| PREDICTED: similar to transcription elongation ... 306 4e-83
Alignment gi|XP_537866.2| PREDICTED: similar to Transcription elongation ... 265 9e-71
Alignment gi|XP_537955.2| PREDICTED: similar to transcription elongation ... 111 2e-24
Alignment gi|XP_849953.1| PREDICTED: similar to Ras-related C3 botulinum ... 100 5e-21
Alignment gi|XP_867023.1| PREDICTED: similar to PHD finger protein 3 isof... 62 1e-09
Alignment gi|XP_867013.1| PREDICTED: similar to PHD finger protein 3 isof... 62 1e-09
Alignment gi|XP_538985.2| PREDICTED: similar to PHD finger protein 3 isof... 62 1e-09
Alignment gi|XP_543090.2| PREDICTED: similar to death associated transcri... 54 3e-07
>ref|XP_535363.2| PREDICTED: similar to Transcription elongation factor A protein 3
(Transcription elongation factor S-II protein 3)
(Transcription elongation factor TFIIS.h) [Canis
familiaris].
Length = 348
Score = 523 bits (1346), Expect = e-148
Identities = 271/349 (77%), Positives = 276/349 (79%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MGQEEELLRIARKLEKMVARKN+EGAL LLKKLNSC+MSIQLLQTTRIGVAVNGVRKHCS
Sbjct: 1 MGQEEELLRIARKLEKMVARKNSEGALGLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 302 DKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKK 481
DKEVVSLAKVLI+NWKRLLDSP PP LDCS+WKPET LSPPRKK
Sbjct: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEERDKAKKEKG-LDCSNWKPETGLSPPRKK 119
Query: 482 RMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAP 661
R EEP MERSNS KSK E VCLLAP
Sbjct: 120 RAEEPKERRDSVDSKSSATSSPKRPSMERSNSGKSKAETPKTPTSPSTPTFAPSVCLLAP 179
Query: 662 CYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVR 841
CYLTGDSVRDKCVEMLS G+NCDKMASEIEDHIYQELKSTDMKYRNRVR
Sbjct: 180 CYLTGDSVRDKCVEMLSAALKAEDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR 239
Query: 842 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 1021
SRISNLKDPRNP LRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
Sbjct: 240 SRISNLKDPRNPSLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 299
Query: 1022 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 300 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>ref|XP_535071.2| PREDICTED: similar to transcription elongation factor A (SII) 1
[Canis familiaris].
Length = 442
Score = 306 bits (783), Expect = 4e-83
Identities = 168/346 (48%), Positives = 213/346 (61%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++RIA+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 143 EDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 202
Query: 311 VVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKKRME 490
V SLAK LI++WK+LLD P T P KK+
Sbjct: 203 VTSLAKSLIKSWKKLLDG----------------------------PSTDKDPEEKKKDT 234
Query: 491 EPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAPCYL 670
+ +N+ + V AP
Sbjct: 235 AITSQNSPEAREESSSSGNVSSRKDETNARDTYVSSFPR----------------APS-- 276
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 277 TSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 336
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 337 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 396
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 397 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 442
>ref|XP_537866.2| PREDICTED: similar to Transcription elongation factor A protein 2
(Transcription elongation factor S-II protein 2)
(Testis-specific S-II) (Transcription elongation factor
TFIIS.l) [Canis familiaris].
Length = 451
Score = 265 bits (677), Expect = 9e-71
Identities = 141/314 (44%), Positives = 192/314 (61%)
Frame = +2
Query: 227 CEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXX 406
C+ ++ LLQ+TR+G++VN +RK SD+EV++LAK LI++WK+LLD+
Sbjct: 188 CKCTLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDAS------------- 234
Query: 407 XXXXXXXLDCSSWKPETSLSPPRKKRMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKS 586
D + + + PP E P E + S+
Sbjct: 235 --------DAKAREQRRAGPPPTSSSKEAP----------------------EAKDPSRK 264
Query: 587 KVEXXXXXXXXXXXXXXXXVCLLAPCYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDK 766
+ E + P +T D+VR+KC EML+ G +C+
Sbjct: 265 RPELPRVPSAPR-------ITTFPPVPVTCDAVRNKCREMLTAALQTDHDHMAVGADCEG 317
Query: 767 MASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEE 946
++++IE+ I++++ +TDMKY+NRVRSRISNLKD +NP LRRNVL G I+ IA MT+EE
Sbjct: 318 LSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGVITPQQIAVMTSEE 377
Query: 947 MASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTT 1126
MASDEL+E+R AMT+EAIREHQMA+TGGT TDLF C +C++KNCTY QVQTRS+DEPMTT
Sbjct: 378 MASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGRCRRKNCTYTQVQTRSSDEPMTT 437
Query: 1127 FVLCNECGNRWKFC 1168
FV+CNECGNRWKFC
Sbjct: 438 FVVCNECGNRWKFC 451
>ref|XP_537955.2| PREDICTED: similar to transcription elongation factor A (SII), 2
[Canis familiaris].
Length = 348
Score = 111 bits (277), Expect = 2e-24
Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L A EIE+HI+ KY+ VRS+++NL+
Sbjct: 170 VRAKCTELLYEALTSPFTEQPKADLWRNFAREIEEHIFTLHSKNLKKYKTCVRSKVANLR 229
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT-GGTTT 1039
+P+N L++N+LSG +S AKMT EMA+ EL++LR + T+ I+EH + + GT T
Sbjct: 230 NPKNSHLQQNLLSGTMSPREFAKMTVMEMANKELKQLRASYTESCIQEHHLPQAIEGTHT 289
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ + DE M T+V+CNECG +W
Sbjct: 290 RKIKCRRCEKFNCKVTVIARGTLFLPSWVRNSNPDEEMMTYVICNECGEQW 340
>ref|XP_849953.1| PREDICTED: similar to Ras-related C3 botulinum toxin substrate 1
(p21-Rac1) [Canis familiaris].
Length = 168
Score = 100 bits (248), Expect = 5e-21
Identities = 51/63 (80%), Positives = 55/63 (87%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
M QEEELLRI RKLE+MVA KN EGALDLLKKLNSC+M IQLLQTT IGVA+NGV K CS
Sbjct: 1 MAQEEELLRIVRKLEEMVAIKNMEGALDLLKKLNSCQMPIQLLQTTSIGVAINGVCKSCS 60
Query: 302 DKE 310
DK+
Sbjct: 61 DKK 63
>ref|XP_867023.1| PREDICTED: similar to PHD finger protein 3 isoform 3 [Canis
familiaris].
Length = 1955
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 871 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 930
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 931 ELASKELAAWRRRENRHTIEMIEKEQ 956
>ref|XP_867013.1| PREDICTED: similar to PHD finger protein 3 isoform 2 [Canis
familiaris].
Length = 1924
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 959 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 1018
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 1019 ELASKELAAWRRRENRHTIEMIEKEQ 1044
>ref|XP_538985.2| PREDICTED: similar to PHD finger protein 3 isoform 1 [Canis
familiaris].
Length = 2043
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 959 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 1018
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 1019 ELASKELAAWRRRENRHTIEMIEKEQ 1044
>ref|XP_543090.2| PREDICTED: similar to death associated transcription factor 1
isoform c [Canis familiaris].
Length = 2212
Score = 54.3 bits (129), Expect = 3e-07
Identities = 29/76 (38%), Positives = 43/76 (56%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + +M E
Sbjct: 710 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE 769
Query: 944 EMASDELRELRNAMTQ 991
E+ S EL R T+
Sbjct: 770 ELVSKELSTWRERPTK 785
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 50,134,527
Number of extensions: 1169500
Number of successful extensions: 4213
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 4199
Number of HSP's successfully gapped: 11
Length of query: 505
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 398
Effective length of database: 15,307,552
Effective search space: 6092405696
Effective search space used: 6092405696
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003360800.1| PREDICTED: LOW QUALITY PROTEIN: transcriptio... 499 e-141
Alignment gi|NP_001230609.1| transcription elongation factor A protein 1 ... 237 1e-62
Alignment gi|XP_001927522.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_003134982.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_003134981.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_003134980.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_001927509.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_001927499.1| PREDICTED: transcription elongation factor A... 107 2e-23
Alignment gi|XP_003124725.1| PREDICTED: DNA-directed RNA polymerase III s... 49 7e-06
>ref|XP_003360800.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 3-like [Sus scrofa].
Length = 388
Score = 499 bits (1284), Expect = e-141
Identities = 260/327 (79%), Positives = 260/327 (79%), Gaps = 1/327 (0%)
Frame = +2
Query: 191 EGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDSPA 370
EGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDSPA
Sbjct: 62 EGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDSPA 121
Query: 371 PPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKKRMEEPXXXXXXXXXXXXXXXXXX 550
PP LDCSSWKPETSLSPPRKKRMEEP
Sbjct: 122 PPKGEKGEKRVKAKKKEKRLDCSSWKPETSLSPPRKKRMEEPKDRRDSVDSKSSATSSPK 181
Query: 551 XXXMERSNSSKSKVEXXXXXXXXXXXXXXXX-VCLLAPCYLTGDSVRDKCVEMLSXXXXX 727
MERSNSSKSKVE VCLLAPCYLTGDSVRDKCVEMLS
Sbjct: 182 RPSMERSNSSKSKVETPRTPSSPSSPTFFAPSVCLLAPCYLTGDSVRDKCVEMLSAALKA 241
Query: 728 XXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGA 907
GINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGA
Sbjct: 242 DDDYKDYGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGA 301
Query: 908 ISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYN 1087
ISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYN
Sbjct: 302 ISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYN 361
Query: 1088 QVQTRSADEPMTTFVLCNECGNRWKFC 1168
QVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 362 QVQTRSADEPMTTFVLCNECGNRWKFC 388
>ref|NP_001230609.1| transcription elongation factor A protein 1 [Sus scrofa].
Length = 300
Score = 237 bits (604), Expect = 1e-62
Identities = 114/166 (68%), Positives = 133/166 (80%)
Frame = +2
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 135 TSDSVRLKCREMLAAALRTGEDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 194
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 195 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 254
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 255 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 300
Score = 100 bits (248), Expect = 3e-21
Identities = 45/80 (56%), Positives = 68/80 (85%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
++E++RIA+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 DDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
Query: 311 VVSLAKVLIRNWKRLLDSPA 370
V SLAK LI++WK+LLD P+
Sbjct: 62 VTSLAKSLIKSWKKLLDGPS 81
>ref|XP_001927522.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein isoform 3 [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_003134982.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_003134981.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_003134980.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_001927509.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein isoform 2 [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_001927499.1| PREDICTED: transcription elongation factor A N-terminal and central
domain-containing protein isoform 1 [Sus scrofa].
Length = 352
Score = 107 bits (266), Expect = 2e-23
Identities = 61/171 (35%), Positives = 90/171 (52%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
VR KC E+L + A EIE+ I+ KY+ +RS+I+NLK
Sbjct: 174 VRAKCTELLYEALAAFSTEQPRADLWHRFAQEIEECIFTLHAKNLKKYKTCIRSKIANLK 233
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK-TGGTTT 1039
+PRN LR N+LSG +S A+MT +MAS EL++LR + T+ I+EH + + GT T
Sbjct: 234 NPRNSHLRENLLSGIMSPRAFAEMTVMDMASKELKQLRASYTESCIQEHSLPQGVEGTPT 293
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+C +C+K NC + V+ DE + T+V+C ECG +W
Sbjct: 294 KKVRCRRCEKFNCQVTVIARGALFLPSWVRNAKPDEELMTYVICKECGEQW 344
>ref|XP_003124725.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Sus
scrofa].
Length = 108
Score = 48.9 bits (115), Expect = 7e-06
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +2
Query: 1052 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 1162
C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 30,881,808
Number of extensions: 729265
Number of successful extensions: 2731
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 2715
Number of HSP's successfully gapped: 10
Length of query: 505
Length of database: 11,343,932
Length adjustment: 103
Effective length of query: 402
Effective length of database: 8,779,541
Effective search space: 3529375482
Effective search space used: 3529375482
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035672.1| transcription elongation factor A protein 3 [Mu... 496 e-140
Alignment gi|NP_001153222.1| transcription elongation factor A protein 1 ... 307 2e-83
Alignment gi|NP_035671.1| transcription elongation factor A protein 1 iso... 306 4e-83
Alignment gi|NP_001153223.1| transcription elongation factor A protein 1 ... 281 7e-76
Alignment gi|NP_033352.1| transcription elongation factor A protein 2 [Mu... 239 3e-63
Alignment gi|NP_001007578.2| transcription elongation factor A N-terminal... 114 3e-25
Alignment gi|NP_001074549.1| PHD finger protein 3 [Mus musculus]. 62 9e-10
Alignment gi|NP_780760.2| death-inducer obliterator 1 isoform 3 [Mus musc... 53 6e-07
Alignment gi|NP_808520.2| death-inducer obliterator 1 isoform 2 [Mus musc... 53 6e-07
>ref|NP_035672.1| transcription elongation factor A protein 3 [Mus musculus].
Length = 347
Score = 496 bits (1277), Expect = e-140
Identities = 260/349 (74%), Positives = 268/349 (76%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MG EEELLRIA+KLEKMV+RK TEGALDLLKKLNSC+MSIQLLQTTRIGVAVNGVRKHCS
Sbjct: 1 MGLEEELLRIAKKLEKMVSRKKTEGALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 302 DKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKK 481
DKEVVSLAKVLI+NWKRLLDSP L CS WKPE LSPPRKK
Sbjct: 61 DKEVVSLAKVLIKNWKRLLDSPRTTKGEREEREKAKKEKG--LGCSDWKPEAGLSPPRKK 118
Query: 482 RMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAP 661
EP +ERSNSSKSKVE VCLLAP
Sbjct: 119 GGGEPKTRRDSVDSRSSTTSSPKRPSLERSNSSKSKVETPTTPSSPSTPTFAPAVCLLAP 178
Query: 662 CYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVR 841
CYLTGDSVRDKCVEMLS G+NCDK+ASEIEDHIYQELKSTDMKYRNRVR
Sbjct: 179 CYLTGDSVRDKCVEMLSAALKAEDNFKDYGVNCDKLASEIEDHIYQELKSTDMKYRNRVR 238
Query: 842 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 1021
SRISNLKDPRNPGLRRNVLSGAIS LIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
Sbjct: 239 SRISNLKDPRNPGLRRNVLSGAISPELIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 298
Query: 1022 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
TGGTTTDL +CSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 299 TGGTTTDLLRCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 347
>ref|NP_001153222.1| transcription elongation factor A protein 1 isoform 3 [Mus musculus].
Length = 300
Score = 307 bits (786), Expect = 2e-83
Identities = 172/346 (49%), Positives = 213/346 (61%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++RIA+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEE 61
Query: 311 VVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKKRME 490
V SLAK LI++WK+LLD P T P KK+
Sbjct: 62 VTSLAKSLIKSWKKLLDG----------------------------PSTDKDPEEKKK-- 91
Query: 491 EPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAPCYL 670
EP R SS S V V
Sbjct: 92 EPAISSQNSPEA-------------REESSSSNVSSRKDETNARDTY----VSSFPRAPS 134
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 135 TSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 194
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 195 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 254
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 255 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 300
>ref|NP_035671.1| transcription elongation factor A protein 1 isoform 2 [Mus musculus].
Length = 301
Score = 306 bits (783), Expect = 4e-83
Identities = 173/346 (50%), Positives = 214/346 (61%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++RIA+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRIAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEE 61
Query: 311 VVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKKRME 490
V SLAK LI++WK+LLD P T P KK+
Sbjct: 62 VTSLAKSLIKSWKKLLDG----------------------------PSTDKDPEEKKK-- 91
Query: 491 EPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAPCYL 670
EP SN S K E AP
Sbjct: 92 EPAISSQNSPEAREESS-------SSSNVSSRKDETNARDTYVSSFPR-------APS-- 135
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 255
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 256 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>ref|NP_001153223.1| transcription elongation factor A protein 1 isoform 1 [Mus musculus].
Length = 312
Score = 281 bits (720), Expect = 7e-76
Identities = 162/325 (49%), Positives = 196/325 (60%)
Frame = +2
Query: 194 GALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDSPAP 373
GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+EV SLAK LI++WK+LLD
Sbjct: 34 GALDLLKELKNIPMTLELLQSTRIGMSVNALRKQSTDEEVTSLAKSLIKSWKKLLDG--- 90
Query: 374 PXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKKRMEEPXXXXXXXXXXXXXXXXXXX 553
P T P KK+ EP
Sbjct: 91 -------------------------PSTDKDPEEKKK--EPAISSQNSPEAREESS---- 119
Query: 554 XXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAPCYLTGDSVRDKCVEMLSXXXXXXX 733
SN S K E AP T DSVR KC EML+
Sbjct: 120 ---SSSNVSSRKDETNARDTYVSSFPR-------APS--TSDSVRLKCREMLAAALRTGD 167
Query: 734 XXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAIS 913
G + +++ S+IE+ IYQE+++TDMKY+NRVRSRISNLKD +NP LR+NVL G I
Sbjct: 168 DYVAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIP 227
Query: 914 AGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQV 1093
L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGGT TDLF C KCKKKNCTY QV
Sbjct: 228 PDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQV 287
Query: 1094 QTRSADEPMTTFVLCNECGNRWKFC 1168
QTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 288 QTRSADEPMTTFVVCNECGNRWKFC 312
>ref|NP_033352.1| transcription elongation factor A protein 2 [Mus musculus].
Length = 299
Score = 239 bits (611), Expect = 3e-63
Identities = 112/167 (67%), Positives = 139/167 (83%)
Frame = +2
Query: 668 LTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSR 847
+T D+VR+KC EML+ G+NC+ ++S+IE+ I+ ++ +TDMKY+NRVRSR
Sbjct: 133 ITCDAVRNKCREMLTLALQTDHDHVAVGVNCEHLSSQIEECIFLDVGNTDMKYKNRVRSR 192
Query: 848 ISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTG 1027
ISNLKD +NPGLRRNVL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA+TG
Sbjct: 193 ISNLKDAKNPGLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTG 252
Query: 1028 GTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
GT TDLF C+KC+KKNCTY QVQTRS+DEPMTT+V+CNECGNRWKFC
Sbjct: 253 GTQTDLFTCNKCRKKNCTYTQVQTRSSDEPMTTYVVCNECGNRWKFC 299
Score = 102 bits (255), Expect = 6e-22
Identities = 46/80 (57%), Positives = 69/80 (86%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MG+EEE+ RIAR+L+KMV RKN EGA+DLL++L + +++ LLQ+TR+G++VN +RK S
Sbjct: 1 MGKEEEIARIARRLDKMVTRKNAEGAMDLLRELKNMPITLHLLQSTRVGMSVNALRKQSS 60
Query: 302 DKEVVSLAKVLIRNWKRLLD 361
D+E+++LAK LI++WK+LLD
Sbjct: 61 DEELIALAKSLIKSWKKLLD 80
>ref|NP_001007578.2| transcription elongation factor A N-terminal and central
domain-containing protein [Mus musculus].
Length = 359
Score = 114 bits (284), Expect = 3e-25
Identities = 65/172 (37%), Positives = 99/172 (57%), Gaps = 12/172 (6%)
Frame = +2
Query: 680 SVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNL 859
SVR KCVE+L +A EIE+HI+ + KY+ +RS+++NL
Sbjct: 181 SVRSKCVELLYTALASSCTDHTEVHIWQNLAREIEEHIFTLHSNNIKKYKTSIRSKVANL 240
Query: 860 KDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT-GGTT 1036
K+PRN L++N LSG +SA A+M+ +MAS EL++LR + T+ +I+EH + ++ GT
Sbjct: 241 KNPRNFHLQQNFLSGTMSAREFAEMSVLDMASQELKQLRASYTESSIQEHCLPQSVDGTW 300
Query: 1037 TDLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
T+ +C +C K NC + VQ + DE M T+V+CNECG +W
Sbjct: 301 TNKIKCRRCDKYNCKVTVIARGTLFLPSWVQNSNPDEQM-TYVICNECGEQW 351
>ref|NP_001074549.1| PHD finger protein 3 [Mus musculus].
Length = 2025
Score = 62.4 bits (150), Expect = 9e-10
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 936 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 995
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 996 ELASKELAAWRRRENRHTIEMIEKEQ 1021
>ref|NP_780760.2| death-inducer obliterator 1 isoform 3 [Mus musculus].
Length = 2256
Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + +M E
Sbjct: 698 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE 757
Query: 944 EMASDELRELRNAMTQEAI 1000
E+ S EL T+ I
Sbjct: 758 ELVSKELSMWTEKPTKSVI 776
>ref|NP_808520.2| death-inducer obliterator 1 isoform 2 [Mus musculus].
Length = 1183
Score = 53.1 bits (126), Expect = 6e-07
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + +M E
Sbjct: 698 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRMKPE 757
Query: 944 EMASDELRELRNAMTQEAI 1000
E+ S EL T+ I
Sbjct: 758 ELVSKELSMWTEKPTKSVI 776
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 41,672,761
Number of extensions: 971177
Number of successful extensions: 3868
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3851
Number of HSP's successfully gapped: 13
Length of query: 505
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 399
Effective length of database: 12,433,743
Effective search space: 4961063457
Effective search space used: 4961063457
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003187.1| transcription elongation factor A protein 3 [Ho... 520 e-147
Alignment gi|NP_958845.1| transcription elongation factor A protein 1 iso... 237 2e-62
Alignment gi|NP_006747.1| transcription elongation factor A protein 1 iso... 237 2e-62
Alignment gi|NP_942016.1| transcription elongation factor A protein 2 iso... 236 4e-62
Alignment gi|NP_003186.1| transcription elongation factor A protein 2 iso... 236 4e-62
Alignment gi|NP_689847.2| transcription elongation factor A N-terminal an... 114 2e-25
Alignment gi|NP_055968.1| PHD finger protein 3 [Homo sapiens]. 62 1e-09
Alignment gi|NP_001180299.1| death-inducer obliterator 1 isoform b [Homo ... 53 9e-07
Alignment gi|NP_001180298.1| death-inducer obliterator 1 isoform c [Homo ... 53 9e-07
Alignment gi|NP_542987.2| death-inducer obliterator 1 isoform b [Homo sap... 53 9e-07
>ref|NP_003187.1| transcription elongation factor A protein 3 [Homo sapiens].
Length = 348
Score = 520 bits (1339), Expect = e-147
Identities = 268/349 (76%), Positives = 277/349 (79%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MGQEEELLRIA+KLEKMVARKNTEGALDLLKKL+SC+MSIQLLQTTRIGVAVNGVRKHCS
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 302 DKEVVSLAKVLIRNWKRLLDSPAPPXXXXXXXXXXXXXXXXXLDCSSWKPETSLSPPRKK 481
DKEVVSLAKVLI+NWKRLLDSP PP L+CS WKPE LSPPRKK
Sbjct: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK 120
Query: 482 RMEEPXXXXXXXXXXXXXXXXXXXXXMERSNSSKSKVEXXXXXXXXXXXXXXXXVCLLAP 661
R E+P +ERSNSSKSK E +CLLAP
Sbjct: 121 R-EDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAP 179
Query: 662 CYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVR 841
CYLTGDSVRDKCVEMLS G+NCDKMASEIEDHIYQELKSTDMKYRNRVR
Sbjct: 180 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR 239
Query: 842 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 1021
SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
Sbjct: 240 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK 299
Query: 1022 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 300 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>ref|NP_958845.1| transcription elongation factor A protein 1 isoform 2 [Homo sapiens].
Length = 280
Score = 237 bits (604), Expect = 2e-62
Identities = 114/166 (68%), Positives = 133/166 (80%)
Frame = +2
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 115 TSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 174
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 175 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 234
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 235 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 280
Score = 64.7 bits (156), Expect = 2e-10
Identities = 33/80 (41%), Positives = 50/80 (62%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++R A+K++KMV +KN +TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQSTDEE 40
Query: 311 VVSLAKVLIRNWKRLLDSPA 370
V SLAK LI++WK+LLD P+
Sbjct: 41 VTSLAKSLIKSWKKLLDGPS 60
>ref|NP_006747.1| transcription elongation factor A protein 1 isoform 1 [Homo sapiens].
Length = 301
Score = 237 bits (604), Expect = 2e-62
Identities = 114/166 (68%), Positives = 133/166 (80%)
Frame = +2
Query: 671 TGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRI 850
T DSVR KC EML+ G + +++ S+IE+ IYQE+++TDMKY+NRVRSRI
Sbjct: 136 TSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRI 195
Query: 851 SNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGG 1030
SNLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGG
Sbjct: 196 SNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGG 255
Query: 1031 TTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
T TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 256 TQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
Score = 99.8 bits (247), Expect = 6e-21
Identities = 45/80 (56%), Positives = 67/80 (83%)
Frame = +2
Query: 131 EEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKE 310
E+E++R A+K++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
Query: 311 VVSLAKVLIRNWKRLLDSPA 370
V SLAK LI++WK+LLD P+
Sbjct: 62 VTSLAKSLIKSWKKLLDGPS 81
>ref|NP_942016.1| transcription elongation factor A protein 2 isoform b [Homo sapiens].
Length = 272
Score = 236 bits (602), Expect = 4e-62
Identities = 111/170 (65%), Positives = 139/170 (81%)
Frame = +2
Query: 659 PCYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRV 838
P +T D+VR+KC EML+ G +C++++++IE+ I++++ +TDMKY+NRV
Sbjct: 103 PVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRV 162
Query: 839 RSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMA 1018
RSRISNLKD +NP LRRNVL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA
Sbjct: 163 RSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMA 222
Query: 1019 KTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
+TGGT TDLF C KC+KKNCTY QVQTRS+DEPMTTFV+CNECGNRWKFC
Sbjct: 223 RTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 272
Score = 66.2 bits (160), Expect = 7e-11
Identities = 28/55 (50%), Positives = 47/55 (85%)
Frame = +2
Query: 200 LDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIRNWKRLLDS 364
+DLL++L + +++ LLQ+TR+G++VN +RK SD+EV++LAK LI++WK+LLD+
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA 55
>ref|NP_003186.1| transcription elongation factor A protein 2 isoform a [Homo sapiens].
Length = 299
Score = 236 bits (602), Expect = 4e-62
Identities = 111/170 (65%), Positives = 139/170 (81%)
Frame = +2
Query: 659 PCYLTGDSVRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRV 838
P +T D+VR+KC EML+ G +C++++++IE+ I++++ +TDMKY+NRV
Sbjct: 130 PVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRV 189
Query: 839 RSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMA 1018
RSRISNLKD +NP LRRNVL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA
Sbjct: 190 RSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMA 249
Query: 1019 KTGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 1168
+TGGT TDLF C KC+KKNCTY QVQTRS+DEPMTTFV+CNECGNRWKFC
Sbjct: 250 RTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
Score = 101 bits (251), Expect = 2e-21
Identities = 45/81 (55%), Positives = 70/81 (86%)
Frame = +2
Query: 122 MGQEEELLRIARKLEKMVARKNTEGALDLLKKLNSCEMSIQLLQTTRIGVAVNGVRKHCS 301
MG+EEE+ RIAR+L+KMV +K+ EGA+DLL++L + +++ LLQ+TR+G++VN +RK S
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS 61
Query: 302 DKEVVSLAKVLIRNWKRLLDS 364
D+EV++LAK LI++WK+LLD+
Sbjct: 62 DEEVIALAKSLIKSWKKLLDA 82
>ref|NP_689847.2| transcription elongation factor A N-terminal and central
domain-containing protein [Homo sapiens].
Length = 381
Score = 114 bits (286), Expect = 2e-25
Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 12/171 (7%)
Frame = +2
Query: 683 VRDKCVEMLSXXXXXXXXXXXXGINCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK 862
+R KC+E+L A EIE+H++ KY+ +RS+++NLK
Sbjct: 203 MRTKCIELLYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKTCIRSKVANLK 262
Query: 863 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT-GGTTT 1039
+PRN L++N+LSG S A+MT EMA+ EL++LR + T+ I+EH + + GT T
Sbjct: 263 NPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHYLPQVIDGTQT 322
Query: 1040 DLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNRW 1159
+ +C +C+K NC + V+ + DE M T+V+CNECG +W
Sbjct: 323 NKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQW 373
>ref|NP_055968.1| PHD finger protein 3 [Homo sapiens].
Length = 2039
Score = 62.4 bits (150), Expect = 1e-09
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 3/86 (3%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++ + +M+ E
Sbjct: 957 KVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPE 1016
Query: 944 EMASDEL---RELRNAMTQEAIREHQ 1012
E+AS EL R N T E I + Q
Sbjct: 1017 ELASKELAAWRRRENRHTIEMIEKEQ 1042
>ref|NP_001180299.1| death-inducer obliterator 1 isoform b [Homo sapiens].
Length = 1189
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + ++ E
Sbjct: 701 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPE 760
Query: 944 EMASDEL-----RELRNAMTQEAIREHQMAKT 1024
E+ S EL R R+ M ++ KT
Sbjct: 761 ELVSKELSTWKERPARSVMESRTKLHNESKKT 792
>ref|NP_001180298.1| death-inducer obliterator 1 isoform c [Homo sapiens].
Length = 2240
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + ++ E
Sbjct: 701 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPE 760
Query: 944 EMASDEL-----RELRNAMTQEAIREHQMAKT 1024
E+ S EL R R+ M ++ KT
Sbjct: 761 ELVSKELSTWKERPARSVMESRTKLHNESKKT 792
>ref|NP_542987.2| death-inducer obliterator 1 isoform b [Homo sapiens].
Length = 1189
Score = 52.8 bits (125), Expect = 9e-07
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Frame = +2
Query: 764 KMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAE 943
K+A IE ++ + TD +Y+++ RS + NLKDP+N GL VL IS + ++ E
Sbjct: 701 KIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFHRVLREEISLAKLVRLKPE 760
Query: 944 EMASDEL-----RELRNAMTQEAIREHQMAKT 1024
E+ S EL R R+ M ++ KT
Sbjct: 761 ELVSKELSTWKERPARSVMESRTKLHNESKKT 792
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 49,248,003
Number of extensions: 1164754
Number of successful extensions: 4376
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 4356
Number of HSP's successfully gapped: 15
Length of query: 505
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 398
Effective length of database: 14,770,016
Effective search space: 5878466368
Effective search space used: 5878466368
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008749
(1516 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL892805.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 638 e-180
Sscrofa_Chr04 62 9e-07
>gb|GL892805.1| Sus scrofa unplaced genomic scaffold chrU_scaffold1633
Length = 142865
Score = 638 bits (322), Expect = e-180
Identities = 344/349 (98%), Gaps = 2/349 (0%)
Strand = Plus / Minus
Query: 1161 agttctgctgatagaaccaccagccagaatttcaatgaacaaggtgaggaagaacaaaga 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105448 agttctgctgatagaaccaccagccagaatttcaatgaacaaggtgaggaagaacaaaga 105389
Query: 1221 gaaagcactaagccgtcgtgactggagaaaaataaatattaaaatgaagaaaaatgctga 1280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105388 gaaagcactaagccgtcgtgactggagaaaaataaatattaaaatgaagaaaaatgctga 105329
Query: 1281 actctgaacggaccattagggatcagagggaaaattcgtttgcaaattcgttcagttatt 1340
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 105328 actctgaacggaccattagagatcagagggaaaattcgtttgcaaattcgttcagttatt 105269
Query: 1341 gatagtgattggtgaagagagggatgctagtangggtatcacgttaagcccatgttgaca 1400
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 105268 gatagtgattggtgaagagagggatgctagtaggggtatcacgttaagcccatgttgaca 105209
Query: 1401 aacccttttgtag-aactcagagacttcagagccgtatctttgacagtggctggcagacc 1459
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105208 aaccc-tttgtagaaactcagagacttcagagccgtatctttgacagtggctggcagacc 105150
Query: 1460 tttgctctgcgtccctttcctcacatctgaacctctcagcctcttctga 1508
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 105149 tttgctctgcgtcccttccctcacatctgaacctctcagcctcttctga 105101
Score = 311 bits (157), Expect = 6e-82
Identities = 157/157 (100%)
Strand = Plus / Minus
Query: 788 catatctaccaggagctcaagagcacagacatgaagtaccggaaccgcgtgcgcagccga 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114219 catatctaccaggagctcaagagcacagacatgaagtaccggaaccgcgtgcgcagccga 114160
Query: 848 atcagcaacctcaaggaccccaggaaccctggcctgaggcggaacgtgctcagcggtgcc 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114159 atcagcaacctcaaggaccccaggaaccctggcctgaggcggaacgtgctcagcggtgcc 114100
Query: 908 atctctgctgggctcattgccaagatgacagcagagg 944
|||||||||||||||||||||||||||||||||||||
Sbjct: 114099 atctctgctgggctcattgccaagatgacagcagagg 114063
Score = 299 bits (151), Expect = 2e-78
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 942 aggaaatggccagtgatgagctgagggaactgagaaacgccatgacccaagaggccatcc 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109973 aggaaatggccagtgatgagctgagggaactgagaaacgccatgacccaagaggccatcc 109914
Query: 1002 gtgagcaccagatggccaagacgggcggcaccaccactgacctcttccagtgcagcaaat 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109913 gtgagcaccagatggccaagacgggcggcaccaccactgacctcttccagtgcagcaaat 109854
Query: 1062 gcaagaagaagaactgcacctataaccaggt 1092
|||||||||||||||||||||||||||||||
Sbjct: 109853 gcaagaagaagaactgcacctataaccaggt 109823
Score = 295 bits (149), Expect = 4e-77
Identities = 165/170 (97%), Gaps = 4/170 (2%)
Strand = Plus / Minus
Query: 566 agatcgaacagcagcaaatcgaaagtggagactcccagaacacccagcagtccctcgagc 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117299 agatcgaacagcagcaaatcgaaagtggagactcccagaacacccagcagtccctcgagc 117240
Query: 626 cctac----ctttgccccttccgtctgcctcctggcgccctgctatctcacgggagactc 681
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 117239 cctacnttcctttgccccttcagtctgcctcctggcgccctgctatctcacgggagactc 117180
Query: 682 tgtccgggacaagtgtgtggagatgctctccgcagccctgaaggcggacg 731
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117179 tgtccgggacaagtgtgtggagatgctctccgcagccctgaaggcggacg 117130
Score = 216 bits (109), Expect = 3e-53
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 251 cagaccaccaggattggagttgctgtgaatggggtccgcaagcattgctctgacaaggag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133907 cagaccaccaggattggagttgctgtgaatggggtccgcaagcattgctctgacaaggag 133848
Query: 311 gtggtgtccttggccaaagtcctcatcagaaactggaagcggctgctgg 359
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133847 gtggtgtccttggccaaagtcctcatcagaaactggaagcggctgctgg 133799
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 427 gcttgactgttccagttggaagccagagacaagcctttcccctccaaggaaaaaacgaat 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133262 gcttgactgttccagttggaagccagagacaagcctttcccctccaaggaaaaaacgaat 133203
Query: 487 ggaagagcccaaagacagg 505
|||||||||||||||||||
Sbjct: 133202 ggaagagcccaaagacagg 133184
Score = 151 bits (76), Expect = 1e-33
Identities = 79/80 (98%)
Strand = Plus / Minus
Query: 1088 caggtgcagacacgcagtgctgatgagcccatgactacctttgttttatgcaatgaatgt 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107791 caggtgcagacacgcagtgctgatgagcccatgactacctttgttttatgcaatgaatgt 107732
Query: 1148 ggcaatcgctggaagttctg 1167
||||||||||||||| ||||
Sbjct: 107731 ggcaatcgctggaaggtctg 107712
Score = 131 bits (66), Expect = 1e-27
Identities = 66/66 (100%)
Strand = Plus / Minus
Query: 502 caggagagactctgtggactccaagtcttcagccacctcctctccaaaaaggccgtcgat 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128907 caggagagactctgtggactccaagtcttcagccacctcctctccaaaaaggccgtcgat 128848
Query: 562 ggaaag 567
||||||
Sbjct: 128847 ggaaag 128842
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 190 ggaaggggctctcgaccttctgaagaagctgaacagctgtgagatgtccatccagctact 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134862 ggaaggggctctcgaccttctgaagaagctgaacagctgtgagatgtccatccagctact 134803
Query: 250 ccag 253
||||
Sbjct: 134802 ccag 134799
Score = 125 bits (63), Expect = 8e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 731 gatgattacaaggactatggcatcaactgtgacaagatggcatcagaaatcgaagatcat 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116959 gatgattacaaggactatggcatcaactgtgacaagatggcatcagaaatcgaagatcat 116900
Query: 791 atc 793
|||
Sbjct: 116899 atc 116897
>Sscrofa_Chr04
|| Length = 143465943
Score = 61.9 bits (31), Expect = 9e-07
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 1088 caggtgcagacacgcagtgctgatgagcccatgactacctttgttttatgcaatgaatgt 1147
||||||||||| || |||||||| ||||||||||| || |||||| | |||||||| |||
Sbjct: 84205363 caggtgcagactcggagtgctgacgagcccatgacgacgtttgttgtctgcaatgagtgt 84205422
Query: 1148 ggcaatcgctggaag 1162
|| || || ||||||
Sbjct: 84205423 ggaaaccgatggaag 84205437
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 43,207,356
Number of extensions: 402
Number of successful extensions: 402
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 11
Length of query: 1516
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1495
Effective length of database: 2,808,413,156
Effective search space: 4198577668220
Effective search space used: 4198577668220
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)