Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002696116.1| PREDICTED: intercellular adhesion molecule-2... 302 4e-82
Alignment gi|XP_582483.3| PREDICTED: intercellular adhesion molecule-2-li... 302 4e-82
Alignment gi|XP_002684499.1| PREDICTED: intercellular adhesion molecule-2... 302 4e-82
Alignment gi|XP_002696142.1| PREDICTED: intercellular adhesion molecule-2... 294 9e-80
Alignment gi|XP_873323.4| PREDICTED: intercellular adhesion molecule-2-li... 294 9e-80
Alignment gi|XP_002696117.1| PREDICTED: intercellular adhesion molecule-2... 281 8e-76
Alignment gi|XP_002696143.1| PREDICTED: intercellular adhesion molecule-2... 266 3e-71
Alignment gi|XP_001789521.1| PREDICTED: intercellular adhesion molecule-2... 266 3e-71
Alignment gi|NP_001033300.1| testicular cell adhesion molecule 1 homolog ... 171 1e-42
Alignment gi|NP_001107234.1| intercellular adhesion molecule 5, telenceph... 119 5e-27
>ref|XP_002696116.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 274
Score = 302 bits (773), Expect = 4e-82
Identities = 157/276 (56%), Positives = 195/276 (70%), Gaps = 1/276 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG+ AFLA+LCC GSG++AFE P + L+V SG Q+INC+ASCT P N L
Sbjct: 1 MSPFGGWGMLAAFLAMLCCQGSGEKAFEGP---EHLMVGSGEFQMINCTASCTDPTNLIL 57
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET ++K LL+ AQWKL++V N+S+D LLC FTC+G+QE+K FNI+VF PPKQVLLTL
Sbjct: 58 ETALNKTLLESQAQWKLFQVYNISKDEELLCSFTCAGKQEMKVFNITVFYPPKQVLLTLS 117
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIECRVP+VAP E LT+TLLRG+EIL+N+T T P P +A+VTH+TTA
Sbjct: 118 HTSVAVGTLFTIECRVPAVAPLEGLTVTLLRGTEILHNQTFEETAPFPHDAVVTHHTTAH 177
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGHHNF+C+A+MDL+SRGG L+HRVSDPQ LEV EP + QM
Sbjct: 178 REDGHHNFSCEAQMDLRSRGGGLVHRVSDPQRLEVKEPEPNYQM-VIMAIVIVLLLLFVT 236
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQAQ 1169
E WR+ RTG Y VQA RL+ ++AQ
Sbjct: 237 FVFLCFVFSEKWRRGRTGHYPVQAAWNRLRRSHRAQ 272
>ref|XP_582483.3| PREDICTED: intercellular adhesion molecule-2-like isoform 1 [Bos
taurus].
Length = 274
Score = 302 bits (773), Expect = 4e-82
Identities = 157/276 (56%), Positives = 195/276 (70%), Gaps = 1/276 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG+ AFLA+LCC GSG++AFE P + L+V SG Q+INC+ASCT P N L
Sbjct: 1 MSPFGGWGMLAAFLAMLCCQGSGEKAFEGP---EHLMVGSGEFQMINCTASCTDPTNLIL 57
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET ++K LL+ AQWKL++V N+S+D LLC FTC+G+QE+K FNI+VF PPKQVLLTL
Sbjct: 58 ETALNKTLLESQAQWKLFQVYNISKDEELLCSFTCAGKQEMKVFNITVFYPPKQVLLTLS 117
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIECRVP+VAP E LT+TLLRG+EIL+N+T T P P +A+VTH+TTA
Sbjct: 118 HTSVAVGTLFTIECRVPAVAPLEGLTVTLLRGTEILHNQTFEETAPFPHDAVVTHHTTAH 177
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGHHNF+C+A+MDL+SRGG L+HRVSDPQ LEV EP + QM
Sbjct: 178 REDGHHNFSCEAQMDLRSRGGGLVHRVSDPQRLEVKEPEPNYQM-VIMAIVIVLLLLFVT 236
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQAQ 1169
E WR+ RTG Y VQA RL+ ++AQ
Sbjct: 237 FVFLCFVFSEKWRRGRTGHYPVQAAWNRLRRSHRAQ 272
>ref|XP_002684499.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 274
Score = 302 bits (773), Expect = 4e-82
Identities = 157/276 (56%), Positives = 195/276 (70%), Gaps = 1/276 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG+ AFLA+LCC GSG++AFE P + L+V SG Q+INC+ASCT P N L
Sbjct: 1 MSPFGGWGMLAAFLAMLCCQGSGEKAFEGP---EHLMVGSGEFQMINCTASCTDPTNLIL 57
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET ++K LL+ AQWKL++V N+S+D LLC FTC+G+QE+K FNI+VF PPKQVLLTL
Sbjct: 58 ETALNKTLLESQAQWKLFQVYNISKDEELLCSFTCAGKQEMKVFNITVFYPPKQVLLTLS 117
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIECRVP+VAP E LT+TLLRG+EIL+N+T T P P +A+VTH+TTA
Sbjct: 118 HTSVAVGTLFTIECRVPAVAPLEGLTVTLLRGTEILHNQTFEETAPFPHDAVVTHHTTAH 177
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGHHNF+C+A+MDL+SRGG L+HRVSDPQ LEV EP + QM
Sbjct: 178 REDGHHNFSCEAQMDLRSRGGGLVHRVSDPQRLEVKEPEPNYQM-VIMAIVIVLLLLFVT 236
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQAQ 1169
E WR+ RTG Y VQA RL+ ++AQ
Sbjct: 237 FVFLCFVFSEKWRRGRTGHYPVQAAWNRLRRSHRAQ 272
>ref|XP_002696142.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 321
Score = 294 bits (753), Expect = 9e-80
Identities = 160/276 (57%), Positives = 193/276 (69%), Gaps = 6/276 (2%)
Frame = +3
Query: 204 PNSSQPREPAAVGSWTPATLLLHHSRTPSQV-----TGGPQLFPASPWVPLKMSPFDSWG 368
P S P G W L L H PSQ TG PQ FP S P KMSPF WG
Sbjct: 29 PGSEIRSSPGNSGCWK---LDLSHPVYPSQHHPFADTGSPQPFPVSLRRPPKMSPFGGWG 85
Query: 369 LFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGLETTVSKKL 548
AFLALLCC GSG +AFE P + L+V SG QVINC+ASCT P++ LET ++K L
Sbjct: 86 SLTAFLALLCCQGSGGKAFEGP---EHLMVGSGEFQVINCTASCTDPKSLVLETHLNKTL 142
Query: 549 LKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGT 725
L+ AQWKL++V N+S+D L+C C+G+QE K FNI+VF PPKQVLLTL T V VGT
Sbjct: 143 LESQAQWKLFKVYNISKDEHLVCSSICAGKQETKVFNITVFYPPKQVLLTLSHTSVAVGT 202
Query: 726 WFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALRKDGHHNF 905
FTIECRVP+VAP E LT+TLLRG+EIL+N+T T P P +A+VTH+TTA R+DG HNF
Sbjct: 203 LFTIECRVPAVAPLEGLTVTLLRGTEILHNQTFEETAPFPHDAVVTHHTTAHREDGLHNF 262
Query: 906 TCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
+C+A+MDL+SRGG L+HRVSDPQ LEV EP ++QM
Sbjct: 263 SCEAQMDLRSRGGGLVHRVSDPQRLEVKEPEPNNQM 298
>ref|XP_873323.4| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 321
Score = 294 bits (753), Expect = 9e-80
Identities = 160/276 (57%), Positives = 193/276 (69%), Gaps = 6/276 (2%)
Frame = +3
Query: 204 PNSSQPREPAAVGSWTPATLLLHHSRTPSQV-----TGGPQLFPASPWVPLKMSPFDSWG 368
P S P G W L L H PSQ TG PQ FP S P KMSPF WG
Sbjct: 29 PGSEIRSSPGNSGCWK---LDLSHPVYPSQHHPFADTGSPQPFPVSLRRPPKMSPFGGWG 85
Query: 369 LFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGLETTVSKKL 548
AFLALLCC GSG +AFE P + L+V SG QVINC+ASCT P++ LET ++K L
Sbjct: 86 SLTAFLALLCCQGSGGKAFEGP---EHLMVGSGEFQVINCTASCTDPKSLVLETHLNKTL 142
Query: 549 LKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGT 725
L+ AQWKL++V N+S+D L+C C+G+QE K FNI+VF PPKQVLLTL T V VGT
Sbjct: 143 LESQAQWKLFKVYNISKDEHLVCSSICAGKQETKVFNITVFYPPKQVLLTLSHTSVAVGT 202
Query: 726 WFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALRKDGHHNF 905
FTIECRVP+VAP E LT+TLLRG+EIL+N+T T P P +A+VTH+TTA R+DG HNF
Sbjct: 203 LFTIECRVPAVAPLEGLTVTLLRGTEILHNQTFEETAPFPHDAVVTHHTTAHREDGLHNF 262
Query: 906 TCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
+C+A+MDL+SRGG L+HRVSDPQ LEV EP ++QM
Sbjct: 263 SCEAQMDLRSRGGGLVHRVSDPQRLEVKEPEPNNQM 298
>ref|XP_002696117.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 251
Score = 281 bits (719), Expect = 8e-76
Identities = 141/224 (62%), Positives = 172/224 (76%), Gaps = 1/224 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG+ AFLA+LCC GS ++ FE P + L+V G QVINC+ASCT P+ L
Sbjct: 1 MSPFGGWGMLAAFLAMLCCRGSNEKVFEGP---EHLMVGFGEFQVINCTASCTDPKKLVL 57
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET ++K LL AQWKL+ V N+S+D LLC FTC+G+QE K FNI+VF PPKQVLLTL
Sbjct: 58 ETHLNKTLLDSQAQWKLFRVYNISKDEELLCSFTCAGKQETKVFNITVFYPPKQVLLTLS 117
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIEC VP+VAP E LT+TLLRG+EILYN+T GT PQ+A+VTH+TTA
Sbjct: 118 HTSVAVGTLFTIECMVPAVAPLEGLTVTLLRGTEILYNQTFVGTARFPQDAVVTHHTTAH 177
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
R+DGHHNF+C+A+MDL+SRGG L+HRVSDPQ LEV EP ++QM
Sbjct: 178 REDGHHNFSCEAQMDLRSRGGGLVHRVSDPQRLEVKEPVPNNQM 221
>ref|XP_002696143.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 240
Score = 266 bits (679), Expect = 3e-71
Identities = 134/224 (59%), Positives = 167/224 (74%), Gaps = 1/224 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG AFLALLCC GSG+E FE P L+V SG QVIN +ASCT P+ L
Sbjct: 1 MSPFGGWGTLAAFLALLCCRGSGEEQFEVPMEPNHLLVGSGEFQVINFTASCTDPKKLVL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET + K L++ AQWKL++V ++S++ L+C F C G++ +K FNI++F PPKQVLLTL
Sbjct: 61 ETALHKTFLEDQAQWKLFKVISISKNMELMCSFICGGKEGMKVFNITLFYPPKQVLLTLS 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIECRVP+VAP E LT+TLLRG+EILYN+T GT PQ+A+VTH+TTA
Sbjct: 121 HTSVAVGTLFTIECRVPAVAPLEGLTVTLLRGTEILYNQTFVGTARFPQDAVVTHHTTAH 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
R+DG HNF+C+A+M L+S GG L+HRVSDPQ LEV EP +QM
Sbjct: 181 REDGLHNFSCEAQMYLRSPGGGLVHRVSDPQRLEVKEPVPSNQM 224
>ref|XP_001789521.1| PREDICTED: intercellular adhesion molecule-2-like [Bos taurus].
Length = 240
Score = 266 bits (679), Expect = 3e-71
Identities = 134/224 (59%), Positives = 167/224 (74%), Gaps = 1/224 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPF WG AFLALLCC GSG+E FE P L+V SG QVIN +ASCT P+ L
Sbjct: 1 MSPFGGWGTLAAFLALLCCRGSGEEQFEVPMEPNHLLVGSGEFQVINFTASCTDPKKLVL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET + K L++ AQWKL++V ++S++ L+C F C G++ +K FNI++F PPKQVLLTL
Sbjct: 61 ETALHKTFLEDQAQWKLFKVISISKNMELMCSFICGGKEGMKVFNITLFYPPKQVLLTLS 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
T V VGT FTIECRVP+VAP E LT+TLLRG+EILYN+T GT PQ+A+VTH+TTA
Sbjct: 121 HTSVAVGTLFTIECRVPAVAPLEGLTVTLLRGTEILYNQTFVGTARFPQDAVVTHHTTAH 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
R+DG HNF+C+A+M L+S GG L+HRVSDPQ LEV EP +QM
Sbjct: 181 REDGLHNFSCEAQMYLRSPGGGLVHRVSDPQRLEVKEPVPSNQM 224
>ref|NP_001033300.1| testicular cell adhesion molecule 1 homolog (mouse), pseudogene [Bos
taurus].
Length = 547
Score = 171 bits (433), Expect = 1e-42
Identities = 91/226 (40%), Positives = 136/226 (60%), Gaps = 1/226 (0%)
Frame = +3
Query: 339 LKMSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENS 518
++M F W L LAL+ PG+ +E FE W Q +V+ G+S ++NCS +C P
Sbjct: 1 MEMLLFGVWAL----LALIPDPGAPEERFEVSVWPDQALVKYGQSLMVNCSTTCPDPGPG 56
Query: 519 GLETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLT 695
G+ET + K + +G QWK + + +V+Q++IL C+F+C+G Q+ I+V+ PP+QV++
Sbjct: 57 GIETLLKKTQVGKGPQWKEFLLEDVTQNSILQCFFSCAGIQKDINLGITVYQPPEQVIVE 116
Query: 696 LQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTT 875
LQP V V FT+ C VPSV P E LT+TLL+ + L + R + Q A VT +
Sbjct: 117 LQPALVAVDEAFTVTCHVPSVTPLENLTLTLLQDDQELQRKNFRSLAMASQRAEVTISVK 176
Query: 876 ALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
A R+D NF+C+A++DL S GG L H S QVL ++E Q Q+
Sbjct: 177 AQREDDRCNFSCRAELDLNSHGGGLFHSNSALQVLRIFEFSQSPQI 222
>ref|NP_001107234.1| intercellular adhesion molecule 5, telencephalin [Bos taurus].
Length = 922
Score = 119 bits (298), Expect = 5e-27
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 10/223 (4%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCCPGSG----KEAFEKPTWT----KQLVVESGRSQVINCSASCTQ 506
P S GL A L L G G ++P W + +VE G S +NCS +C +
Sbjct: 2 PGPSPGLHRALLGLWAALGLGLLSLSAVTQEPFWADLQPRVALVERGGSLWLNCSTNCPR 61
Query: 507 PENSGLETTVSKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPK 680
PE GLET++ + ++G +W + V++ + +T +C+F C+ R R I F P
Sbjct: 62 PERGGLETSLRRNGTQKGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD 121
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIV 860
+V L P + VG FT+ CRVP P +LT+TLLRG++ L + G +P + A++
Sbjct: 122 RVELVPLPAWQPVGENFTLSCRVPGAGPRGSLTLTLLRGTQELIRRSFAGESPRARGAVL 181
Query: 861 THNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
T A R+D NF+C+A++DL+ G L S P+ L +
Sbjct: 182 TATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTF 224
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,230,568
Number of extensions: 1498111
Number of successful extensions: 6450
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 6397
Number of HSP's successfully gapped: 15
Length of query: 392
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 288
Effective length of database: 14,240,222
Effective search space: 4101183936
Effective search space used: 4101183936
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537594.2| PREDICTED: similar to Intercellular adhesion mo... 292 5e-79
Alignment gi|XP_537595.2| PREDICTED: similar to testicular cell adhesion ... 168 1e-41
Alignment gi|XP_542074.2| PREDICTED: similar to intercellular adhesion mo... 117 3e-26
Alignment gi|NP_001003291.1| intercellular adhesion molecule 1 [Canis lup... 102 7e-22
Alignment gi|XP_854002.1| PREDICTED: similar to LW glycoprotein [Canis fa... 84 3e-16
Alignment gi|NP_001003298.1| vascular cell adhesion protein 1 precursor [... 50 5e-06
>ref|XP_537594.2| PREDICTED: similar to Intercellular adhesion molecule-2 precursor
(ICAM-2) (CD102 antigen) [Canis familiaris].
Length = 272
Score = 292 bits (747), Expect = 5e-79
Identities = 147/278 (52%), Positives = 183/278 (65%), Gaps = 1/278 (0%)
Frame = +3
Query: 300 GGPQLFPASPWVPLKMSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQV 479
GGP+LFP SPW PLKMSPF WGL A LAL CCPGSG E FE T+ +QL V+ G SQ
Sbjct: 7 GGPRLFPVSPWTPLKMSPFGCWGLPAALLALFCCPGSG-EVFEVHTYPEQLAVKPGESQF 65
Query: 480 INCSASCTQPENSGLETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFN 656
INCS SC++PE GLET ++K LLK GAQWK Y V N+SQDTI+ CYFTC G Q + N
Sbjct: 66 INCSTSCSRPEAGGLETILAKTLLKSGAQWKEYLVSNISQDTIIYCYFTCFGEQRLTSLN 125
Query: 657 ISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTT 836
+SVFSPP V T++T+ C + ++ P E+LT+ LLRG E+L+N+T GTT
Sbjct: 126 VSVFSPP-------------VNTYYTLNCFLTALCPLESLTLMLLRGQEVLHNQTFWGTT 172
Query: 837 PSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMX 1016
Q A THN+TA R+DG HNF+CQA +DL+S GG++IH VS+PQ+L+VYEP D+QM
Sbjct: 173 DGTQGATATHNSTAHREDGLHNFSCQAILDLRSLGGNIIHSVSEPQMLKVYEPRPDNQMV 232
Query: 1017 XXXXXXXXXXXXXXXXXXXXXXXGEHWRQRRTGSYMVQ 1130
G+HWRQRR G+Y VQ
Sbjct: 233 VIISVVSVLLFLFVTSILLCFVLGQHWRQRRMGTYGVQ 270
>ref|XP_537595.2| PREDICTED: similar to testicular cell adhesion molecule 1 [Canis
familiaris].
Length = 535
Score = 168 bits (425), Expect = 1e-41
Identities = 85/208 (40%), Positives = 132/208 (63%), Gaps = 1/208 (0%)
Frame = +3
Query: 393 LCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWK 572
L G+ +E FE W Q +V+ G+S ++NCS +C P SG+ET + K + +G QWK
Sbjct: 3 LIISGATEEIFEVSVWPDQALVKFGQSLMVNCSTTCPDPGPSGIETFLKKTQVDKGPQWK 62
Query: 573 LYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRV 749
+ + +V++++IL C+F+C+G Q+ I+V+ PP+QV+L LQP +V V T++C+V
Sbjct: 63 EFLLEDVTENSILQCFFSCAGIQKDTSLGITVYQPPEQVILDLQPAWVAVNEACTVKCQV 122
Query: 750 PSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDL 929
PSVAP E LT+TLL+G++ L+ + + Q A VT N A R+D NF+C+A++DL
Sbjct: 123 PSVAPLENLTLTLLQGNQELHRKNFMNLDVASQRAEVTINVKAQREDDRCNFSCRAELDL 182
Query: 930 QSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
S GG L H S +VL ++E Q Q+
Sbjct: 183 SSHGGGLFHSSSAIKVLRIFEFSQSPQI 210
>ref|XP_542074.2| PREDICTED: similar to intercellular adhesion molecule 5 precursor
[Canis familiaris].
Length = 922
Score = 117 bits (292), Expect = 3e-26
Identities = 73/213 (34%), Positives = 112/213 (52%), Gaps = 3/213 (1%)
Frame = +3
Query: 360 SWGLFMAF-LALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGLETTV 536
S GL+ A L LL +E F + +VE G S +NCS +C +PE GLET++
Sbjct: 12 SLGLWAALGLGLLGLSAVAQEPFWADLQPRVALVERGGSLWLNCSTNCPRPERGGLETSL 71
Query: 537 SKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTF 710
+ + G +W + V++ + +T +C+F C+ R R I F P +V L P +
Sbjct: 72 RRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPDRVELVPLPAW 131
Query: 711 VTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALRKD 890
VG FT+ CRVP P +LT+TLLRG++ L + G P + A++T A R+D
Sbjct: 132 QPVGENFTLSCRVPGAGPRGSLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARRED 191
Query: 891 GHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
NF+C+A++DL+ G L S P+ L +
Sbjct: 192 HGANFSCRAELDLRPHGLGLFENSSAPRELRTF 224
>ref|NP_001003291.1| intercellular adhesion molecule 1 [Canis lupus familiaris].
Length = 531
Score = 102 bits (254), Expect = 7e-22
Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 1/216 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
M+P + A LALL G + + ++ G S +NCS SC Q GL
Sbjct: 1 MAPGPAAPALPALLALLGALLPGLGGAQTSVDPAEAIIPRGGSVQVNCSTSCNQTSIFGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET ++KK L G W L+E+ +V +D+ L+C+ C Q + +++V+ P++V L
Sbjct: 61 ETLLTKKELNSGDNWVLFELTDVQEDSKLICFSNCH-EQTMAPMHLTVYWFPERVELAPL 119
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
P + VG T+ C+V AP LT+ LLRG E L + G + A VT
Sbjct: 120 PRWQPVGENLTMTCQVAGGAPRTNLTVVLLRGEEELSRQPAVG-----EPAEVTFTVAVG 174
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
R+D NF+C+ +DL+ RG L S P+ L+ +
Sbjct: 175 REDHLANFSCRTDLDLRHRGLGLFQNSSAPRQLQTF 210
>ref|XP_854002.1| PREDICTED: similar to LW glycoprotein [Canis familiaris].
Length = 273
Score = 84.0 bits (206), Expect = 3e-16
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Frame = +3
Query: 432 PTWT----KQLVVESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWKLYEV--NVS 593
P W K V G S +NCS+SC PE+SGL T + + G W Y++ +
Sbjct: 47 PFWVRISPKFKAVPPGGSVWLNCSSSCPLPEDSGLSTRLRRGGTLRGPGWVSYQLLDVRA 106
Query: 594 QDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFET 773
+ + C+ TC+G+ I+ + P++V+ L+P V G+ +T+ C + V P
Sbjct: 107 WSSEVHCFVTCAGQTRGATATITAYKRPQRVI--LEPP-VLAGSEYTLRCHLTHVFPVGF 163
Query: 774 LTITLLRGSEILYNETL-RGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHL 950
L +TL G ++Y+E L R T+P +T+ A R+D TC A+ +L G +
Sbjct: 164 LVVTLRLGGRVIYSENLKRHTSPDLANVTLTYKLPARRRDFRQTVTCHARFNLD---GLV 220
Query: 951 IHRVSDPQVLEV 986
+ S P L V
Sbjct: 221 VRSSSAPMTLPV 232
>ref|NP_001003298.1| vascular cell adhesion protein 1 precursor [Canis lupus
familiaris].
Length = 739
Score = 49.7 bits (117), Expect = 5e-06
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Frame = +3
Query: 447 QLVVESGRSQVINCSAS-CTQPENSG---LETTVSKKLLKEGAQ--WKLYEVNVSQDTIL 608
Q++ + G S V+ C + C P S +++ +S + EGA+ L VN+ +
Sbjct: 322 QIIAQIGDSVVLTCGVTDCESPSFSWRTQIDSPLSGTVKVEGAKSTLTLSPVNLENEHSY 381
Query: 609 LCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITL 788
LC TC ++ K + ++S P+ + + V G T+ C VP+V P + L I L
Sbjct: 382 LCTVTCGHKKLEKGIKVDLYSFPRDPEVEMSGLLVD-GNPVTVSCEVPNVYPSDRLEIEL 440
Query: 789 LRGSEILYNET 821
+G I+ +++
Sbjct: 441 FKGETIIESKS 451
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,003,348
Number of extensions: 1504080
Number of successful extensions: 6498
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 6459
Number of HSP's successfully gapped: 6
Length of query: 392
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 287
Effective length of database: 15,374,224
Effective search space: 4412402288
Effective search space used: 4412402288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001631.1| intercellular adhesion molecule-2 [Sus scrof... 512 e-145
Alignment gi|XP_003123292.2| PREDICTED: intercellular adhesion molecule 5... 114 8e-26
Alignment gi|XP_003123268.1| PREDICTED: intercellular adhesion molecule 5... 114 8e-26
Alignment gi|NP_998981.1| intercellular adhesion molecule-1 [Sus scrofa]. 94 1e-19
Alignment gi|NP_001138851.1| intercellular adhesion molecule 3 [Sus scrof... 88 1e-17
Alignment gi|XP_003123294.2| PREDICTED: intercellular adhesion molecule 4... 78 1e-14
>ref|NP_001001631.1| intercellular adhesion molecule-2 [Sus scrofa].
Length = 277
Score = 512 bits (1319), Expect = e-145
Identities = 251/277 (90%), Positives = 253/277 (91%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL
Sbjct: 1 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEVNVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQP 704
ETTVSKKLLKEGAQWKLYEVNVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQP
Sbjct: 61 ETTVSKKLLKEGAQWKLYEVNVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQP 120
Query: 705 TFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALR 884
TFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALR
Sbjct: 121 TFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALR 180
Query: 885 KDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXXX 1064
KDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM
Sbjct: 181 KDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMAIIIAVVSVLLFLFVAS 240
Query: 1065 XXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQAQLA 1175
GEHWRQRRTGSYMVQAVQ+RL+WCYQAQLA
Sbjct: 241 VLLCFVLGEHWRQRRTGSYMVQAVQRRLRWCYQAQLA 277
>ref|XP_003123292.2| PREDICTED: intercellular adhesion molecule 5-like [Sus scrofa].
Length = 489
Score = 114 bits (286), Expect = 8e-26
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCCPGSG----KEAFEKPTWT----KQLVVESGRSQVINCSASCTQ 506
P S GL A L L G G ++P W + +VE G S +NCS +C +
Sbjct: 2 PGPSPGLHRALLGLWAVLGLGLLGLSAVAQEPFWADLQPRVALVERGGSLWLNCSTNCPR 61
Query: 507 PENSGLETTVSKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPK 680
PE GLET++ + + G +W + V++ + +T +C+F C+ R R I F P
Sbjct: 62 PERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD 121
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIV 860
+V L P + VG FT+ CRVP P +LT+TLLRG++ L + G P + A++
Sbjct: 122 RVELVPLPAWQPVGENFTLSCRVPGAGPRGSLTLTLLRGAQELIRRSFAGEPPRARGAVL 181
Query: 861 THNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
T A R+D NF+C+A++DL+ G L S + L +
Sbjct: 182 TATVLARREDHGANFSCRAELDLRPHGLGLFENSSATRELRTF 224
>ref|XP_003123268.1| PREDICTED: intercellular adhesion molecule 5-like [Sus scrofa].
Length = 922
Score = 114 bits (286), Expect = 8e-26
Identities = 74/223 (33%), Positives = 113/223 (50%), Gaps = 10/223 (4%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCCPGSG----KEAFEKPTWT----KQLVVESGRSQVINCSASCTQ 506
P S GL A L L G G ++P W + +VE G S +NCS +C +
Sbjct: 2 PGPSPGLHRALLGLWAVLGLGLLGLSAVAQEPFWADLQPRVALVERGGSLWLNCSTNCPR 61
Query: 507 PENSGLETTVSKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPK 680
PE GLET++ + + G +W + V++ + +T +C+F C+ R R I F P
Sbjct: 62 PERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD 121
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIV 860
+V L P + VG FT+ CRVP P +LT+TLLRG++ L + G P + A++
Sbjct: 122 RVELVPLPAWQPVGENFTLSCRVPGAGPRGSLTLTLLRGAQELIRRSFAGEPPRARGAVL 181
Query: 861 THNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
T A R+D NF+C+A++DL+ G L S + L +
Sbjct: 182 TATVLARREDHGANFSCRAELDLRPHGLGLFENSSATRELRTF 224
>ref|NP_998981.1| intercellular adhesion molecule-1 [Sus scrofa].
Length = 537
Score = 94.0 bits (232), Expect = 1e-19
Identities = 70/213 (32%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Frame = +3
Query: 375 MAFLALLC------CPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENS-GLETT 533
+A LALL PG G E W ++ G S +NCS +C S GLET
Sbjct: 11 LALLALLLPLLGALLPGLG--GAEISMWPLNTIIPKGGSMKVNCSVACDGNITSFGLETH 68
Query: 534 VSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTF 710
K + +WK++E+ NV D LLC+ C G Q + N++V+ P+ V L ++
Sbjct: 69 WHKTEVDHRDKWKIFELSNVENDGTLLCHAVCQGNQTQVQGNLTVYWFPEYVKLA-NLSW 127
Query: 711 VTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTALRKD 890
G F + C+V AP L+ L RG E L+ +++ P A VT A RKD
Sbjct: 128 QREGQHFNLSCQVSGGAPRTNLSAVLFRGEEELFRQSVGMEEP----ANVTFRMLASRKD 183
Query: 891 GHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
NF+C+ +++LQ +G L S P L+ Y
Sbjct: 184 HGANFSCRTELNLQPQGLELFWNSSAPLKLQTY 216
>ref|NP_001138851.1| intercellular adhesion molecule 3 [Sus scrofa].
Length = 372
Score = 87.8 bits (216), Expect = 1e-17
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCC---PGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSG 521
P ++ +F+ L L+ C PG+ + F+ + V G S ++NCS C +
Sbjct: 10 PSGAYWIFLISLLLVACLLPPGAQGQEFQMRVELQPPAVLPGESVLVNCSTDCLHAKLIS 69
Query: 522 LETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTL 698
+ET + + + G W +++ NV+ DT C+ C Q ++ NI+++ P++V L
Sbjct: 70 VETYLLWEPVGSGRGWAAFQLNNVTGDTQFFCFGLCDDFQIVRSSNITIYRFPERVELAP 129
Query: 699 QPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTA 878
P + + + C + AP LT+ L +G E L + P+ VT +A
Sbjct: 130 LPPWHPLDKPLLLSCLLSGGAPRAHLTVALFKGEEELGRQPAAKGEPTE----VTVTVSA 185
Query: 879 LRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
R D NF+C+ ++DL+S+G L S P+ L+ +
Sbjct: 186 SRDDHGANFSCRTELDLRSQGLGLFQNSSAPRKLQTF 222
>ref|XP_003123294.2| PREDICTED: intercellular adhesion molecule 4-like [Sus scrofa].
Length = 238
Score = 77.8 bits (190), Expect = 1e-14
Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 3/181 (1%)
Frame = +3
Query: 456 VESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWKLYEV--NVSQDTILLCYFTCS 629
V G S +NCS+SC QPE S L T + + G +W Y++ + + + C+ TC+
Sbjct: 59 VPPGGSVWLNCSSSCPQPEGSSLHTELRRGETLSGPRWVSYQLLDVRAWSSDVHCFVTCA 118
Query: 630 GRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEIL 809
G I+ + P+ V+ L+P V G +T+ C V V P L +TL RG +++
Sbjct: 119 GETRGATARITAYKQPRSVI--LEPP-VLAGGEYTLRCHVTHVFPVGFLVVTLRRGGQVI 175
Query: 810 YNETL-RGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEV 986
Y+E+L R T+ +T+ + D TC A+++L G ++ S P L V
Sbjct: 176 YSESLKRFTSLHLANVTLTYALSVRPGDFGQPVTCHARLNLD---GLVVLSSSAPMTLPV 232
Query: 987 Y 989
+
Sbjct: 233 F 233
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,076,161
Number of extensions: 1014124
Number of successful extensions: 4081
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4058
Number of HSP's successfully gapped: 6
Length of query: 392
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,829,335
Effective search space: 2569336485
Effective search space used: 2569336485
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034624.1| intercellular adhesion molecule 2 precursor [Mu... 235 6e-62
Alignment gi|NP_083743.2| testicular cell adhesion molecule 1 [Mus muscul... 166 4e-41
Alignment gi|NP_032345.2| intercellular adhesion molecule 5 precursor [Mu... 112 4e-25
Alignment gi|NP_034623.1| intercellular adhesion molecule 1 precursor [Mu... 104 2e-22
Alignment gi|NP_035823.3| vascular cell adhesion protein 1 precursor [Mus... 51 2e-06
>ref|NP_034624.1| intercellular adhesion molecule 2 precursor [Mus musculus].
Length = 277
Score = 235 bits (599), Expect = 6e-62
Identities = 128/278 (46%), Positives = 170/278 (61%), Gaps = 3/278 (1%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F W L + L L PGSG++AFE W+++ +VE+ S INCS +C P+ GL
Sbjct: 1 MSSFACWSL--SLLILFYSPGSGEKAFEVYIWSEKQIVEATESWKINCSTNCAAPDMGGL 58
Query: 525 ETTVSKKLLKEGAQ--WKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLT 695
ET +K +L+E Q WK + V NVS+DT+ C+FTCSG+Q + NI V+ PP QV L
Sbjct: 59 ETPTNKIMLEEHPQGKWKQFLVSNVSKDTVFFCHFTCSGKQHSESLNIRVYQPPAQVTLK 118
Query: 696 LQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTT 875
LQP V VG FTIEC V V P E LT++LLRG E L N+T G PQEA T N+T
Sbjct: 119 LQPPRVFVGEDFTIECTVSPVQPLERLTLSLLRGRETLKNQTFGGAETVPQEATATFNST 178
Query: 876 ALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXX 1055
AL+KDG NF+CQA++DL+ GG++I +S+ Q+LEVYEP QD+QM
Sbjct: 179 ALKKDG-LNFSCQAELDLRPHGGYIIRSISEYQILEVYEPMQDNQMVIIIVVVSILLFLF 237
Query: 1056 XXXXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQAQ 1169
G+HW +RRTG+Y V A +RL ++A+
Sbjct: 238 VTSVLLCFIFGQHWHRRRTGTYGVLAAWRRLPRAFRAR 275
>ref|NP_083743.2| testicular cell adhesion molecule 1 [Mus musculus].
Length = 548
Score = 166 bits (419), Expect = 4e-41
Identities = 86/226 (38%), Positives = 135/226 (59%), Gaps = 1/226 (0%)
Frame = +3
Query: 339 LKMSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENS 518
+KM W L LAL+ CPG+ +E F+ + +VE G S +NCS +C P S
Sbjct: 1 MKMLLLGVWTL----LALIPCPGAAEELFQVSVHPNEALVEFGHSLTVNCSTTCPDPGPS 56
Query: 519 GLETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLT 695
G+ET + K L +G+QWK + + ++++D +L C+F+C+G Q+ I+++ PP+QV+L
Sbjct: 57 GIETFLKKTQLSKGSQWKEFLLEDITEDLVLQCFFSCAGEQKDTVLAITMYQPPEQVILD 116
Query: 696 LQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTT 875
LQP +V V FT+ C VPSVAP ++LT+TLL+G + L+ + + Q A VT
Sbjct: 117 LQPEWVAVDEAFTVTCHVPSVAPLQSLTLTLLQGDQELHRKDFLSLSLVSQRAEVTATVR 176
Query: 876 ALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQM 1013
A R + NF+C+A++DL GG L H S + L ++E Q+ Q+
Sbjct: 177 AHRDNDRRNFSCRAELDLSPHGGGLFHGSSATKQLRIFEFSQNPQI 222
>ref|NP_032345.2| intercellular adhesion molecule 5 precursor [Mus musculus].
Length = 917
Score = 112 bits (281), Expect = 4e-25
Identities = 75/223 (33%), Positives = 112/223 (50%), Gaps = 10/223 (4%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCCPGSGKEAFE----KPTWT----KQLVVESGRSQVINCSASCTQ 506
P S GL A L L G G +P W + +VE G S +NCS +C +
Sbjct: 2 PGPSPGLRRALLGLWAALGLGILGISAVALEPFWADLQPRVALVERGGSLWLNCSTNCPR 61
Query: 507 PENSGLETTVSKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPK 680
PE GLET++ + + G +W + V++ + +T +C+F C+ R R I F P
Sbjct: 62 PERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD 121
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIV 860
+V L P++ VG FT+ CRVP P +LT+TLLRG + L + G P + A++
Sbjct: 122 RVELVPLPSWQPVGENFTLSCRVPGAGPRASLTLTLLRGGQELIRRSFVGEPPRARGAML 181
Query: 861 THNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
T A R+D NF+C A++DL+ G L S P+ L +
Sbjct: 182 TARVLARREDHRVNFSCLAELDLRPHGLGLFANSSAPRQLRTF 224
>ref|NP_034623.1| intercellular adhesion molecule 1 precursor [Mus musculus].
Length = 537
Score = 104 bits (259), Expect = 2e-22
Identities = 62/184 (33%), Positives = 97/184 (52%), Gaps = 1/184 (0%)
Frame = +3
Query: 444 KQLVVESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWKLYEVN-VSQDTILLCYF 620
++ + G S +NCS+SC + + GLET K L+ G WKL+E++ + +D+ LC+
Sbjct: 34 REAFLPQGGSVQVNCSSSCKEDLSLGLETQWLKDELESGPNWKLFELSEIGEDSSPLCFE 93
Query: 621 TCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGS 800
C Q I+V+S P+ V L P + VG T+ C V AP L+ LLRG
Sbjct: 94 NCGTVQSSASATITVYSFPESVELRPLPAWQQVGKDLTLRCHVDGGAPRTQLSAVLLRGE 153
Query: 801 EILYNETLRGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVL 980
EIL + + G P+E +T A R D NF+C+ ++DL+ +G L VS+ + L
Sbjct: 154 EILSRQPVGGHPKDPKE--ITFTVLASRGDHGANFSCRTELDLRPQGLALFSNVSEARSL 211
Query: 981 EVYE 992
++
Sbjct: 212 RTFD 215
>ref|NP_035823.3| vascular cell adhesion protein 1 precursor [Mus musculus].
Length = 739
Score = 50.8 bits (120), Expect = 2e-06
Identities = 41/127 (32%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Frame = +3
Query: 447 QLVVESGRSQVINCSA-SCTQPENSGLETTVSKK---LLKEGAQWKLY--EVNVSQDTIL 608
Q+ + G S V+ C+A C P S T S + EGA+ L V +
Sbjct: 322 QVAAQVGDSVVLTCAAIGCDSPSFSWRTQTDSPLNGVVRNEGAKSTLVLSSVGFEDEHSY 381
Query: 609 LCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITL 788
LC TC R KR + V+S P+ ++ + V G T+ C VP+V PF+ L I L
Sbjct: 382 LCAVTCLQRTLEKRTQVEVYSFPEDPVIKMSGPLVH-GRPVTVNCTVPNVYPFDHLEIEL 440
Query: 789 LRGSEIL 809
L+G L
Sbjct: 441 LKGETTL 447
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,277,329
Number of extensions: 1232594
Number of successful extensions: 5157
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5130
Number of HSP's successfully gapped: 5
Length of query: 392
Length of database: 15,617,559
Length adjustment: 103
Effective length of query: 289
Effective length of database: 12,523,851
Effective search space: 3619392939
Effective search space used: 3619392939
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001093259.1| intercellular adhesion molecule 2 precursor ... 259 3e-69
Alignment gi|NP_001093258.1| intercellular adhesion molecule 2 precursor ... 259 3e-69
Alignment gi|NP_001093257.1| intercellular adhesion molecule 2 precursor ... 259 3e-69
Alignment gi|NP_001093256.1| intercellular adhesion molecule 2 precursor ... 259 3e-69
Alignment gi|NP_000864.2| intercellular adhesion molecule 2 precursor [Ho... 259 3e-69
Alignment gi|NP_003250.3| intercellular adhesion molecule 5 precursor [Ho... 116 3e-26
Alignment gi|NP_000192.2| intercellular adhesion molecule 1 precursor [Ho... 101 1e-21
Alignment gi|NP_002153.2| intercellular adhesion molecule 3 precursor [Ho... 101 1e-21
Alignment gi|NP_071772.1| intercellular adhesion molecule 4 isoform 2 pre... 80 3e-15
Alignment gi|NP_001535.1| intercellular adhesion molecule 4 isoform 1 pre... 80 4e-15
>ref|NP_001093259.1| intercellular adhesion molecule 2 precursor [Homo sapiens].
Length = 275
Score = 259 bits (663), Expect = 3e-69
Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F L +A L+CCPGS ++ FE K+L VE S +NCS +C QPE GL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET++ K LL E AQWK Y V N+S DT+L C+FTCSG+QE N+SV+ PP+QV+LTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
PT V VG FTIECRVP+V P ++LT+ L RG+E L+ ET P+PQEA T N+TA
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGH NF+C A +DL SRGG++ H+ S P++LE+YEP DSQM
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQ 1163
G+H RQ+R G+Y V+A +RL ++
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFR 274
>ref|NP_001093258.1| intercellular adhesion molecule 2 precursor [Homo sapiens].
Length = 275
Score = 259 bits (663), Expect = 3e-69
Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F L +A L+CCPGS ++ FE K+L VE S +NCS +C QPE GL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET++ K LL E AQWK Y V N+S DT+L C+FTCSG+QE N+SV+ PP+QV+LTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
PT V VG FTIECRVP+V P ++LT+ L RG+E L+ ET P+PQEA T N+TA
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGH NF+C A +DL SRGG++ H+ S P++LE+YEP DSQM
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQ 1163
G+H RQ+R G+Y V+A +RL ++
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFR 274
>ref|NP_001093257.1| intercellular adhesion molecule 2 precursor [Homo sapiens].
Length = 275
Score = 259 bits (663), Expect = 3e-69
Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F L +A L+CCPGS ++ FE K+L VE S +NCS +C QPE GL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET++ K LL E AQWK Y V N+S DT+L C+FTCSG+QE N+SV+ PP+QV+LTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
PT V VG FTIECRVP+V P ++LT+ L RG+E L+ ET P+PQEA T N+TA
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGH NF+C A +DL SRGG++ H+ S P++LE+YEP DSQM
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQ 1163
G+H RQ+R G+Y V+A +RL ++
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFR 274
>ref|NP_001093256.1| intercellular adhesion molecule 2 precursor [Homo sapiens].
Length = 275
Score = 259 bits (663), Expect = 3e-69
Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F L +A L+CCPGS ++ FE K+L VE S +NCS +C QPE GL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET++ K LL E AQWK Y V N+S DT+L C+FTCSG+QE N+SV+ PP+QV+LTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
PT V VG FTIECRVP+V P ++LT+ L RG+E L+ ET P+PQEA T N+TA
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGH NF+C A +DL SRGG++ H+ S P++LE+YEP DSQM
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQ 1163
G+H RQ+R G+Y V+A +RL ++
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFR 274
>ref|NP_000864.2| intercellular adhesion molecule 2 precursor [Homo sapiens].
Length = 275
Score = 259 bits (663), Expect = 3e-69
Identities = 133/274 (48%), Positives = 174/274 (63%), Gaps = 1/274 (0%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
MS F L +A L+CCPGS ++ FE K+L VE S +NCS +C QPE GL
Sbjct: 1 MSSFGYRTLTVALFTLICCPGSDEKVFEVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGL 60
Query: 525 ETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQ 701
ET++ K LL E AQWK Y V N+S DT+L C+FTCSG+QE N+SV+ PP+QV+LTLQ
Sbjct: 61 ETSLDKILLDEQAQWKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQ 120
Query: 702 PTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTAL 881
PT V VG FTIECRVP+V P ++LT+ L RG+E L+ ET P+PQEA T N+TA
Sbjct: 121 PTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTAD 180
Query: 882 RKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDSQMXXXXXXXXXXXXXXXX 1061
R+DGH NF+C A +DL SRGG++ H+ S P++LE+YEP DSQM
Sbjct: 181 REDGHRNFSCLAVLDLMSRGGNIFHKHSAPKMLEIYEPVSDSQMVIIVTVVSVLLSLFVT 240
Query: 1062 XXXXXXXXGEHWRQRRTGSYMVQAVQKRLKWCYQ 1163
G+H RQ+R G+Y V+A +RL ++
Sbjct: 241 SVLLCFIFGQHLRQQRMGTYGVRAAWRRLPQAFR 274
>ref|NP_003250.3| intercellular adhesion molecule 5 precursor [Homo sapiens].
Length = 924
Score = 116 bits (291), Expect = 3e-26
Identities = 76/229 (33%), Positives = 115/229 (50%), Gaps = 10/229 (4%)
Frame = +3
Query: 351 PFDSWGLFMAFLALLCCPGSG----KEAFEKPTWT----KQLVVESGRSQVINCSASCTQ 506
P S GL A L L G G ++P W + VE G S +NCS +C +
Sbjct: 2 PGPSPGLRRALLGLWAALGLGLFGLSAVSQEPFWADLQPRVAFVERGGSLWLNCSTNCPR 61
Query: 507 PENSGLETTVSKKLLKEGAQWKLYE-VNVSQ-DTILLCYFTCSGRQEIKRFNISVFSPPK 680
PE GLET++ + + G +W + V++ + +T +C+F C+ R R I F P
Sbjct: 62 PERGGLETSLRRNGTQRGLRWLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQRPD 121
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIV 860
+V L P + VG FT+ CRVP P +LT+TLLRG++ L + G P + A++
Sbjct: 122 RVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVL 181
Query: 861 THNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVYEPFQDS 1007
T A R+D NF+C+A++DL+ G L S P+ L + D+
Sbjct: 182 TATVLARREDHGANFSCRAELDLRPHGLGLFENSSAPRELRTFSLSPDA 230
>ref|NP_000192.2| intercellular adhesion molecule 1 precursor [Homo sapiens].
Length = 532
Score = 101 bits (252), Expect = 1e-21
Identities = 69/218 (31%), Positives = 108/218 (49%), Gaps = 3/218 (1%)
Frame = +3
Query: 345 MSPFDSWGLFMAFLALLCCPGSGKEAFEKPTWTKQLVVESGRSQVINCSASCTQPENSGL 524
M+P A L LL G + ++++ G S ++ CS SC QP+ G+
Sbjct: 1 MAPSSPRPALPALLVLLGALFPGPGNAQTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGI 60
Query: 525 ETTVSKK-LLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTL 698
ET + KK LL G K+YE+ NV +D+ +CY C Q + ++V+ P++V L
Sbjct: 61 ETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAP 120
Query: 699 QPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQEAIVTHNTTA 878
P++ VG T+ C+V AP LT+ LLRG + L E P+ E T
Sbjct: 121 LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKRE------PAVGEPAEVTTTVL 174
Query: 879 LRKDGH-HNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
+R+D H NF+C+ ++DL+ +G L S P L+ +
Sbjct: 175 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTF 212
>ref|NP_002153.2| intercellular adhesion molecule 3 precursor [Homo sapiens].
Length = 547
Score = 101 bits (252), Expect = 1e-21
Identities = 72/224 (32%), Positives = 111/224 (49%), Gaps = 5/224 (2%)
Frame = +3
Query: 333 VPLKMSPFDSWGLFMAFLALLCC---PGSGKEAFEKPTWTKQLVVESGRSQVINCSASCT 503
VP + P W L L+CC PG + F + V+ +G S +NCS C
Sbjct: 5 VPSVLWPRACWTL------LVCCLLTPGVQGQEFLLRVEPQNPVLSAGGSLFVNCSTDCP 58
Query: 504 QPENSGLETTVSKKLLKEGAQWKLYEV-NVSQDTILLCYFTCSGRQEIKRFNISVFSPPK 680
E LET++SK+L+ G W + + NV+ ++ +LC C+G Q NI+V+ P+
Sbjct: 59 SSEKIALETSLSKELVASGMGWAAFNLSNVTGNSRILCSVYCNGSQITGSSNITVYRLPE 118
Query: 681 QVLLTLQPTFVTVGTWFTIECRVPSVAPFETLTITLLRGSEILYNETLRGTTPSPQE-AI 857
+V L P + VG FT+ C+V +P +LT+ LLR E L + P+ +E A
Sbjct: 119 RVELAPLPPWQPVGQNFTLRCQVEDGSPRTSLTVVLLRWEEELSRQ------PAVEEPAE 172
Query: 858 VTHNTTALRKDGHHNFTCQAKMDLQSRGGHLIHRVSDPQVLEVY 989
VT A R D F+C+ ++D+Q +G L S P+ L +
Sbjct: 173 VTATVLASRDDHGAPFSCRTELDMQPQGLGLFVNTSAPRQLRTF 216
>ref|NP_071772.1| intercellular adhesion molecule 4 isoform 2 precursor [Homo
sapiens].
Length = 237
Score = 80.5 bits (197), Expect = 3e-15
Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 7/194 (3%)
Frame = +3
Query: 432 PTWTKQ----LVVESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWKLYEV--NVS 593
P W + + V+ G+S +NCS SC QP+NS L T + + G W Y++ +
Sbjct: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRA 106
Query: 594 QDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFET 773
++ C TC+G+ I+ + PP V+ L+P V G +T+ C V V P
Sbjct: 107 WSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQVFPVGY 163
Query: 774 LTITLLRGSEILYNETL-RGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHL 950
L +TL GS ++Y+E+L R T +T+ A +D C A+++L G +
Sbjct: 164 LVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLD---GLV 220
Query: 951 IHRVSDPQVLEVYE 992
+ S P L + E
Sbjct: 221 VRNSSAPITLMLGE 234
>ref|NP_001535.1| intercellular adhesion molecule 4 isoform 1 precursor [Homo
sapiens].
Length = 271
Score = 80.1 bits (196), Expect = 4e-15
Identities = 56/190 (29%), Positives = 90/190 (47%), Gaps = 7/190 (3%)
Frame = +3
Query: 432 PTWTKQ----LVVESGRSQVINCSASCTQPENSGLETTVSKKLLKEGAQWKLYEV--NVS 593
P W + + V+ G+S +NCS SC QP+NS L T + + G W Y++ +
Sbjct: 47 PFWVRMSPEFVAVQPGKSVQLNCSNSCPQPQNSSLRTPLRQGKTLRGPGWVSYQLLDVRA 106
Query: 594 QDTILLCYFTCSGRQEIKRFNISVFSPPKQVLLTLQPTFVTVGTWFTIECRVPSVAPFET 773
++ C TC+G+ I+ + PP V+ L+P V G +T+ C V V P
Sbjct: 107 WSSLAHCLVTCAGKTRWATSRITAYKPPHSVI--LEPP-VLKGRKYTLRCHVTQVFPVGY 163
Query: 774 LTITLLRGSEILYNETL-RGTTPSPQEAIVTHNTTALRKDGHHNFTCQAKMDLQSRGGHL 950
L +TL GS ++Y+E+L R T +T+ A +D C A+++L G +
Sbjct: 164 LVVTLRHGSRVIYSESLERFTGLDLANVTLTYEFAAGPRDFWQPVICHARLNLD---GLV 220
Query: 951 IHRVSDPQVL 980
+ S P L
Sbjct: 221 VRNSSAPITL 230
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,039,445
Number of extensions: 1480933
Number of successful extensions: 6400
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 6363
Number of HSP's successfully gapped: 12
Length of query: 392
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 287
Effective length of database: 14,835,944
Effective search space: 4257915928
Effective search space used: 4257915928
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008767
(1177 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr12 636 e-180
>Sscrofa_Chr12
|| Length = 63588571
Score = 636 bits (321), Expect = e-180
Identities = 321/321 (100%)
Strand = Plus / Plus
Query: 670 cccctccaaagcaagtgctgctgacgctgcagcccacttttgtgaccgtagggacatggt 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981702 cccctccaaagcaagtgctgctgacgctgcagcccacttttgtgaccgtagggacatggt 14981761
Query: 730 tcaccatcgagtgccgggtgccctctgtggccccctttgaaaccctcaccatcaccctgc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981762 tcaccatcgagtgccgggtgccctctgtggccccctttgaaaccctcaccatcaccctgc 14981821
Query: 790 tccgtggcagtgagattttgtacaatgagactctaagagggaccacaccgtccccccagg 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981822 tccgtggcagtgagattttgtacaatgagactctaagagggaccacaccgtccccccagg 14981881
Query: 850 aggctatagtgacccacaacaccacagccctcaggaaagatgggcaccacaacttcacct 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981882 aggctatagtgacccacaacaccacagccctcaggaaagatgggcaccacaacttcacct 14981941
Query: 910 gccaggccaagatggatctgcagtctcgcggcggacacctcattcacagagtctcagatc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14981942 gccaggccaagatggatctgcagtctcgcggcggacacctcattcacagagtctcagatc 14982001
Query: 970 cccaggtgcttgaggtctatg 990
|||||||||||||||||||||
Sbjct: 14982002 cccaggtgcttgaggtctatg 14982022
Score = 523 bits (264), Expect = e-146
Identities = 267/268 (99%)
Strand = Plus / Plus
Query: 402 ccagggtctggcaaggaggcgttcgagaaacccacgtggacgaagcagctggtggtggag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980014 ccagggtctggcaaggaggcgttcgagaaacccacgtggacgaagcagctggtggtggag 14980073
Query: 462 tctggaaggtcccaggtgattaactgtagtgccagctgtactcagcctgagaacagtggt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980074 tctggaaggtcccaggtgattaactgtagtgccagctgtactcagcctgagaacagtggt 14980133
Query: 522 ctggagaccaccgtctccaagaagctcctgaaagagggggctcagtggaagctgtatgag 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14980134 ctggagaccaccgtctccaagaagctcctgaaagagggggctcagtggaagctgtatgag 14980193
Query: 582 gtcaatgtctcccaggacaccatcctcctttgctatttcacctgctccggcaggcaggag 641
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 14980194 gtcaatgtctcccaggacaccatcctcctttgctatttcacctgcttcggcaggcaggag 14980253
Query: 642 atcaagagattcaacatcagcgtgttct 669
||||||||||||||||||||||||||||
Sbjct: 14980254 atcaagagattcaacatcagcgtgttct 14980281
Score = 369 bits (186), Expect = 2e-99
Identities = 189/190 (99%)
Strand = Plus / Plus
Query: 112 ccttcaaaacaaagtactgcaagtgcgatagtctgaactcagagcctgggacaggaagca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14964025 ccttcaaaacaaagtactgcaagtgcgatagtctgaactcagagcctgggacaggaagca 14964084
Query: 172 cgtgactcgggagaggagtcagcctgcactcacccaatagctcgcagccccgggaaccag 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14964085 cgtgactcgggagaggagtcagcctgcactcacccaatagctcgcagccccgggaaccag 14964144
Query: 232 cagcagttggaagctggaccccggccaccctcctgctccatcacagccgcactccttcgc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14964145 cagcagttggaagctggaccccggccaccctcctgctccatcacagccgcacttcttcgc 14964204
Query: 292 aggtgacagg 301
||||||||||
Sbjct: 14964205 aggtgacagg 14964214
Score = 349 bits (176), Expect = 2e-93
Identities = 185/188 (98%)
Strand = Plus / Plus
Query: 990 gaaccctttcaagacagccagatggccatcatcatcgcggtcgtgtccgtgctgctcttc 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14982632 gaaccctttcaagacagccagatggccatcatcatcgcggtcgtgtccgtgctgctcttc 14982691
Query: 1050 ttgtttgtggcatctgtcctgctctgctttgtcttgggcgagcactggcgccagaggcgg 1109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14982692 ttgtttgtggcatctgtcctgctctgctttgtcttgggcgagcactggcgccagaggcgg 14982751
Query: 1110 acaggttcctacatggtgcaagccgttcaaaagaggctgaagtggtgctaccaggcacag 1169
||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||
Sbjct: 14982752 acaggttcctacatggtgcaagccgttcagaggaggctgaggtggtgctaccaggcacag 14982811
Query: 1170 cttgcatg 1177
||||||||
Sbjct: 14982812 cttgcatg 14982819
Score = 208 bits (105), Expect = 5e-51
Identities = 108/109 (99%)
Strand = Plus / Plus
Query: 298 caggcggtcctcagctctttcctgccagcccgtgggtgccactcaagatgtccccttttg 357
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14977935 caggcggtcctcggctctttcctgccagcccgtgggtgccactcaagatgtccccttttg 14977994
Query: 358 attcctggggactgttcatggcctttctcgccctgctctgctgcccagg 406
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14977995 attcctggggactgttcatggcctttctcgccctgctctgctgcccagg 14978043
Score = 137 bits (69), Expect = 2e-29
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 2 agatgtgaaaagatctgagaaggccctagttccgtggtgaggcacagcaaattctgggaa 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14963915 agatgtgaaaagatctgagaaggccctagttccgtggtgaggcacagcaaattctgggaa 14963974
Query: 62 gacccagct 70
|||||||||
Sbjct: 14963975 gacccagct 14963983
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 32,630,548
Number of extensions: 210
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 6
Length of query: 1177
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1156
Effective length of database: 2,808,413,156
Effective search space: 3246525608336
Effective search space used: 3246525608336
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)