Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001039688.1| N-acylglucosamine 2-epimerase [Bos taurus]. 705 0.0
>ref|NP_001039688.1| N-acylglucosamine 2-epimerase [Bos taurus].
Length = 422
Score = 705 bits (1820), Expect = 0.0
Identities = 331/379 (87%), Positives = 358/379 (94%)
Frame = +1
Query: 67 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGR 246
MEKE+ETL+AWK+RV +ELDRV+AFWL+HSHD+E GGFFTCLGRDG+VYDDLKYVWLQGR
Sbjct: 1 MEKEQETLRAWKDRVARELDRVVAFWLDHSHDQEQGGFFTCLGRDGQVYDDLKYVWLQGR 60
Query: 247 QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRS 426
QVWMYCRLYR+ ERF RPELL+AAKAGGEFLLR+A+VAPP KKCAFVLTRDGRPVKVQR+
Sbjct: 61 QVWMYCRLYRQFERFRRPELLNAAKAGGEFLLRYAQVAPPAKKCAFVLTRDGRPVKVQRT 120
Query: 427 IFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMA 606
IFSECFYTMAMNELWRVT +ARYQ+EA++MMDQIV WVREDPSGLGRPQLPGA ASESMA
Sbjct: 121 IFSECFYTMAMNELWRVTGDARYQNEAMEMMDQIVSWVREDPSGLGRPQLPGAPASESMA 180
Query: 607 VPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 786
VPMMLL LVEQLGE DEELAG A+LG WCA+RILQHVQR GQAVLENVSEDGEELSGCL
Sbjct: 181 VPMMLLNLVEQLGEADEELAGISAELGDWCAQRILQHVQRGGQAVLENVSEDGEELSGCL 240
Query: 787 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADG 966
GRHQNPGHALEAGWFLLR++ + GDAKLRAHVID FLLLPF SGWD +HGGLFYFQDADG
Sbjct: 241 GRHQNPGHALEAGWFLLRYAIQRGDAKLRAHVIDKFLLLPFHSGWDPEHGGLFYFQDADG 300
Query: 967 LCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYREWFG 1146
LCPTQLEWAMKLWWPHSEAMIAFLMGYSE+GDPALLR+FYQVAEYTF +FRDPEY EWFG
Sbjct: 301 LCPTQLEWAMKLWWPHSEAMIAFLMGYSETGDPALLRIFYQVAEYTFHRFRDPEYGEWFG 360
Query: 1147 YLNREGKVALTIKGGPFKG 1203
YLNR+GKVALTIKGGPFKG
Sbjct: 361 YLNRDGKVALTIKGGPFKG 379
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 50,439,811
Number of extensions: 1508497
Number of successful extensions: 9659
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9461
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 17,681,374
Length adjustment: 104
Effective length of query: 297
Effective length of database: 14,240,222
Effective search space: 4229345934
Effective search space used: 4229345934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_855355.1| PREDICTED: similar to N-acylglucosamine 2-epime... 583 e-167
>ref|XP_855355.1| PREDICTED: similar to N-acylglucosamine 2-epimerase (GlcNAc
2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE)
(Renin-binding protein) (RnBP) [Canis familiaris].
Length = 351
Score = 583 bits (1504), Expect = e-167
Identities = 278/349 (79%), Positives = 302/349 (86%)
Frame = +1
Query: 67 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGR 246
M+KERE LQAWKERV QELDRV+AFW+EHSHD+EHGGFFTCLGRDG+VYDDLKYVWLQGR
Sbjct: 1 MDKEREALQAWKERVEQELDRVVAFWMEHSHDQEHGGFFTCLGRDGQVYDDLKYVWLQGR 60
Query: 247 QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRS 426
QVWMYCRLYRK ERF PELLD+AKAGGEFLLR ARVAPP KKCAFVLTRDG+P+KVQR+
Sbjct: 61 QVWMYCRLYRKFERFRSPELLDSAKAGGEFLLRFARVAPPGKKCAFVLTRDGQPIKVQRT 120
Query: 427 IFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMA 606
IFSECFYTMAMNELWRVT EARYQ EAV+MMDQI +WV EDP GLG P GA A ES
Sbjct: 121 IFSECFYTMAMNELWRVTGEARYQKEAVEMMDQIAYWVGEDPWGLGGPFFRGAPAFESRG 180
Query: 607 VPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 786
VPM+LL + G+ ++ +LG A+R +H++RDGQAVLENVSEDG ELSGCL
Sbjct: 181 VPMILLHSGDTSGKPAKDRGAPSPELGDCRAQRTREHLRRDGQAVLENVSEDGGELSGCL 240
Query: 787 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADG 966
GRHQNPGHALEAGWFLLRH+ R GD +LRA VID FLLLPFRSGWD DHGGLFYFQDADG
Sbjct: 241 GRHQNPGHALEAGWFLLRHAIRKGDPELRARVIDKFLLLPFRSGWDPDHGGLFYFQDADG 300
Query: 967 LCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQ 1113
LCPTQLEWAMKLWWPHSEAMIAFLMGYS+SGDP LL LFYQVAEYTFRQ
Sbjct: 301 LCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPTLLHLFYQVAEYTFRQ 349
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 52,690,494
Number of extensions: 1561098
Number of successful extensions: 10293
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9975
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 18,874,504
Length adjustment: 105
Effective length of query: 296
Effective length of database: 15,374,224
Effective search space: 4550770304
Effective search space used: 4550770304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999065.1| N-acylglucosamine 2-epimerase [Sus scrofa]. 796 0.0
>ref|NP_999065.1| N-acylglucosamine 2-epimerase [Sus scrofa].
Length = 402
Score = 796 bits (2055), Expect = 0.0
Identities = 378/379 (99%), Positives = 378/379 (99%)
Frame = +1
Query: 67 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGR 246
MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGR
Sbjct: 1 MEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLKYVWLQGR 60
Query: 247 QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRS 426
QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRS
Sbjct: 61 QVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGRPVKVQRS 120
Query: 427 IFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMA 606
IFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMA
Sbjct: 121 IFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGAVASESMA 180
Query: 607 VPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 786
VPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL
Sbjct: 181 VPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCL 240
Query: 787 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADG 966
GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADG
Sbjct: 241 GRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADG 300
Query: 967 LCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYREWFG 1146
LCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEY EWFG
Sbjct: 301 LCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFG 360
Query: 1147 YLNREGKVALTIKGGPFKG 1203
YLNREGKVALTIKGGPFKG
Sbjct: 361 YLNREGKVALTIKGGPFKG 379
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,648,872
Number of extensions: 977619
Number of successful extensions: 6176
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6056
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 11,343,932
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,829,335
Effective search space: 2648800500
Effective search space used: 2648800500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_075621.3| N-acylglucosamine 2-epimerase isoform 1 [Mus mu... 702 0.0
Alignment gi|NP_001158176.1| N-acylglucosamine 2-epimerase isoform 2 [Mus... 665 0.0
>ref|NP_075621.3| N-acylglucosamine 2-epimerase isoform 1 [Mus musculus].
Length = 430
Score = 702 bits (1813), Expect = 0.0
Identities = 326/386 (84%), Positives = 352/386 (91%)
Frame = +1
Query: 46 GLRVWQDMEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLK 225
GL + QDMEKERETLQ WK+RV QELDRV+AFW+EHSHD+EHGGFFTCLGRDG+VYD LK
Sbjct: 5 GLLMLQDMEKERETLQVWKKRVEQELDRVIAFWMEHSHDQEHGGFFTCLGRDGKVYDHLK 64
Query: 226 YVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGR 405
YVWLQGRQVWMYCRLYR ERF R ELLDAA+AGGEFLLR+ARVAPP KKCAFVLTRDGR
Sbjct: 65 YVWLQGRQVWMYCRLYRSFERFRRVELLDAARAGGEFLLRYARVAPPGKKCAFVLTRDGR 124
Query: 406 PVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGA 585
PVKVQR+IFSECFYTMAMNELW+VT E RYQSEA++MMDQI+HWVREDP+GLGRPQL GA
Sbjct: 125 PVKVQRTIFSECFYTMAMNELWKVTGEVRYQSEAIEMMDQIIHWVREDPAGLGRPQLSGA 184
Query: 586 VASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDG 765
+A+E MAVPMMLL LVEQLGEEDEEL YA+LG WC RILQHVQRDGQ VLENVSEDG
Sbjct: 185 LATEPMAVPMMLLSLVEQLGEEDEELTNMYAELGDWCVHRILQHVQRDGQVVLENVSEDG 244
Query: 766 EELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLF 945
+EL GCLGRHQNPGH LEAGWFLL+++ R GD KLR H+ID FLLLPF SGWD +HGGLF
Sbjct: 245 KELPGCLGRHQNPGHTLEAGWFLLQYALRKGDPKLRMHIIDKFLLLPFHSGWDPEHGGLF 304
Query: 946 YFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDP 1125
YFQDADGLCPTQLEW MKLWWPHSEAMIAFLMGYS+SGDPALL LFY+VAEYTFRQFRDP
Sbjct: 305 YFQDADGLCPTQLEWNMKLWWPHSEAMIAFLMGYSDSGDPALLHLFYKVAEYTFRQFRDP 364
Query: 1126 EYREWFGYLNREGKVALTIKGGPFKG 1203
EY EWFGYLN+EGKVALTIKGGPFKG
Sbjct: 365 EYGEWFGYLNQEGKVALTIKGGPFKG 390
>ref|NP_001158176.1| N-acylglucosamine 2-epimerase isoform 2 [Mus musculus].
Length = 416
Score = 665 bits (1716), Expect = 0.0
Identities = 313/386 (81%), Positives = 339/386 (87%)
Frame = +1
Query: 46 GLRVWQDMEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLK 225
GL + QDMEKERETLQ WK+RV QELDRV+AFW+EHSHD+EHGGFFTCLGRDG+V
Sbjct: 5 GLLMLQDMEKERETLQVWKKRVEQELDRVIAFWMEHSHDQEHGGFFTCLGRDGKV----- 59
Query: 226 YVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGR 405
WMYCRLYR ERF R ELLDAA+AGGEFLLR+ARVAPP KKCAFVLTRDGR
Sbjct: 60 ---------WMYCRLYRSFERFRRVELLDAARAGGEFLLRYARVAPPGKKCAFVLTRDGR 110
Query: 406 PVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGA 585
PVKVQR+IFSECFYTMAMNELW+VT E RYQSEA++MMDQI+HWVREDP+GLGRPQL GA
Sbjct: 111 PVKVQRTIFSECFYTMAMNELWKVTGEVRYQSEAIEMMDQIIHWVREDPAGLGRPQLSGA 170
Query: 586 VASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDG 765
+A+E MAVPMMLL LVEQLGEEDEEL YA+LG WC RILQHVQRDGQ VLENVSEDG
Sbjct: 171 LATEPMAVPMMLLSLVEQLGEEDEELTNMYAELGDWCVHRILQHVQRDGQVVLENVSEDG 230
Query: 766 EELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLF 945
+EL GCLGRHQNPGH LEAGWFLL+++ R GD KLR H+ID FLLLPF SGWD +HGGLF
Sbjct: 231 KELPGCLGRHQNPGHTLEAGWFLLQYALRKGDPKLRMHIIDKFLLLPFHSGWDPEHGGLF 290
Query: 946 YFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDP 1125
YFQDADGLCPTQLEW MKLWWPHSEAMIAFLMGYS+SGDPALL LFY+VAEYTFRQFRDP
Sbjct: 291 YFQDADGLCPTQLEWNMKLWWPHSEAMIAFLMGYSDSGDPALLHLFYKVAEYTFRQFRDP 350
Query: 1126 EYREWFGYLNREGKVALTIKGGPFKG 1203
EY EWFGYLN+EGKVALTIKGGPFKG
Sbjct: 351 EYGEWFGYLNQEGKVALTIKGGPFKG 376
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 43,306,653
Number of extensions: 1246645
Number of successful extensions: 7242
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 7057
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 15,617,559
Length adjustment: 104
Effective length of query: 297
Effective length of database: 12,493,815
Effective search space: 3710663055
Effective search space used: 3710663055
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002901.2| N-acylglucosamine 2-epimerase [Homo sapiens]. 708 0.0
>ref|NP_002901.2| N-acylglucosamine 2-epimerase [Homo sapiens].
Length = 427
Score = 708 bits (1827), Expect = 0.0
Identities = 334/386 (86%), Positives = 352/386 (91%)
Frame = +1
Query: 46 GLRVWQDMEKERETLQAWKERVGQELDRVMAFWLEHSHDREHGGFFTCLGRDGRVYDDLK 225
GL QDMEKERETLQAWKERVGQELDRV+AFW+EHSHD+EHGGFFTCLGR+GRVYDDLK
Sbjct: 4 GLPARQDMEKERETLQAWKERVGQELDRVVAFWMEHSHDQEHGGFFTCLGREGRVYDDLK 63
Query: 226 YVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHARVAPPEKKCAFVLTRDGR 405
YVWLQGRQVWMYCRLYR ERF +LLDAAKAGGEFLLR+ARVAPP KKCAFVLTRDGR
Sbjct: 64 YVWLQGRQVWMYCRLYRTFERFRHAQLLDAAKAGGEFLLRYARVAPPGKKCAFVLTRDGR 123
Query: 406 PVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRPQLPGA 585
PVKVQR+IFSECFYTMAMNELWR T E RYQ+EAV+MMDQIVHWV+ED SGLGRPQL GA
Sbjct: 124 PVKVQRTIFSECFYTMAMNELWRATGEVRYQTEAVEMMDQIVHWVQEDASGLGRPQLQGA 183
Query: 586 VASESMAVPMMLLCLVEQLGEEDEELAGRYAQLGHWCARRILQHVQRDGQAVLENVSEDG 765
A+E MAVPMMLL LVEQLGE DEELAG+YA+LG WCARRILQHVQRDGQAVLENVSE G
Sbjct: 184 PAAEPMAVPMMLLNLVEQLGEADEELAGKYAELGDWCARRILQHVQRDGQAVLENVSEGG 243
Query: 766 EELSGCLGRHQNPGHALEAGWFLLRHSSRSGDAKLRAHVIDTFLLLPFRSGWDADHGGLF 945
+EL GCLGR QNPGH LEAGWFLLRH R GD +LRAHVID FLLLPF SGWD DHGGLF
Sbjct: 244 KELPGCLGRQQNPGHTLEAGWFLLRHCIRKGDPELRAHVIDKFLLLPFHSGWDPDHGGLF 303
Query: 946 YFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDP 1125
YFQDAD CPTQLEWAMKLWWPHSEAMIAFLMGYS+SGDP LLRLFYQVAEYTFRQFRDP
Sbjct: 304 YFQDADNFCPTQLEWAMKLWWPHSEAMIAFLMGYSDSGDPVLLRLFYQVAEYTFRQFRDP 363
Query: 1126 EYREWFGYLNREGKVALTIKGGPFKG 1203
EY EWFGYL+REGKVAL+IKGGPFKG
Sbjct: 364 EYGEWFGYLSREGKVALSIKGGPFKG 389
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 51,470,585
Number of extensions: 1509316
Number of successful extensions: 9448
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 9290
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 18,297,164
Length adjustment: 105
Effective length of query: 296
Effective length of database: 14,835,944
Effective search space: 4391439424
Effective search space used: 4391439424
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008774
(1204 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_ChrX 438 e-120
>Sscrofa_ChrX
|| Length = 144288218
Score = 438 bits (221), Expect = e-120
Identities = 227/229 (99%)
Strand = Plus / Minus
Query: 495 ccagagcgaagcggtggacatgatggatcagatcgtgcactgggtgcgagaggacccctc 554
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 142233099 ccagagcgaagcggtggagatgatggatcagatcgtgcactgggtgcgagaggacccctc 142233040
Query: 555 tgggctgggccggccccagctccccggggccgtggcctcggagtccatggcagtgcccat 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142233039 tgggctgggccggccccagctccccggggccgtggcctcggagtccatggcagtgcccat 142232980
Query: 615 gatgctgctgtgcctggtggagcagctcggggaggaggacgaggagctggcaggccgcta 674
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 142232979 gatgctgctgtgcctggtggagcagctcggggaggaggacgaggagctggcgggccgcta 142232920
Query: 675 cgcgcagctggggcactggtgcgctcggaggatcctgcagcacgtccag 723
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142232919 cgcgcagctggggcactggtgcgctcggaggatcctgcagcacgtccag 142232871
Score = 357 bits (180), Expect = 9e-96
Identities = 180/180 (100%)
Strand = Plus / Minus
Query: 802 ccaggccacgcgctggaagctggctggttcctgctccgccacagcagccggagcggtgac 861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142231975 ccaggccacgcgctggaagctggctggttcctgctccgccacagcagccggagcggtgac 142231916
Query: 862 gccaaacttcgagcccacgtcatcgacacgttcctgctactgcctttccgctccggatgg 921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142231915 gccaaacttcgagcccacgtcatcgacacgttcctgctactgcctttccgctccggatgg 142231856
Query: 922 gacgctgatcacggaggcctcttctacttccaggatgccgatggcctctgccccacccag 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142231855 gacgctgatcacggaggcctcttctacttccaggatgccgatggcctctgccccacccag 142231796
Score = 341 bits (172), Expect = 5e-91
Identities = 175/176 (99%)
Strand = Plus / Minus
Query: 323 cagggggcgaatttttgctgcgccatgcccgagtggcacctcctgaaaagaagtgtgcct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234271 cagggggcgaatttttgctgcgccatgcccgagtggcacctcctgaaaagaagtgtgcct 142234212
Query: 383 ttgtgctgacgcgggatggccggcccgtcaaggtgcagcggagcatcttcagtgagtgct 442
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234211 ttgtgctgacgcgggacggccggcccgtcaaggtgcagcggagcatcttcagtgagtgct 142234152
Query: 443 tctacaccatggccatgaacgagctgtggagggtgacggcggaggcacggtaccag 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234151 tctacaccatggccatgaacgagctgtggagggtgacggcggaggcacggtaccag 142234096
Score = 268 bits (135), Expect = 6e-69
Identities = 141/143 (98%)
Strand = Plus / Minus
Query: 581 gggccgtggcctcggagtccatggcagtgcccatgatgctgctgtgcctggtggagcagc 640
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141616248 gggccatggcctcggagtccatggcagtgcccatgatgctgctgtgcctggtggagcagc 141616189
Query: 641 tcggggaggaggacgaggagctggcaggccgctacgcgcagctggggcactggtgcgctc 700
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 141616188 tcggggaggaggacgaggagctggcgggccgctacgcgcagctggggcactggtgcgctc 141616129
Query: 701 ggaggatcctgcagcacgtccag 723
|||||||||||||||||||||||
Sbjct: 141616128 ggaggatcctgcagcacgtccag 141616106
Score = 268 bits (135), Expect = 6e-69
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 979 cagctggagtgggccatgaagctctggtggccgcacagcgaagccatgatcgcctttctc 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142231388 cagctggagtgggccatgaagctctggtggccgcacagcgaagccatgatcgcctttctc 142231329
Query: 1039 atgggctacagtgagagcggggaccctgccttactgcgtctcttctaccaggtggccgag 1098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142231328 atgggctacagtgagagcggggaccctgccttactgcgtctcttctaccaggtggccgag 142231269
Query: 1099 tacacgtttcgccag 1113
|||||||||||||||
Sbjct: 142231268 tacacgtttcgccag 142231254
Score = 226 bits (114), Expect = 2e-56
Identities = 114/114 (100%)
Strand = Plus / Minus
Query: 61 caggatatggagaaggagcgcgaaactctgcaggcctggaaggagcgtgtgggccaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142235044 caggatatggagaaggagcgcgaaactctgcaggcctggaaggagcgtgtgggccaagag 142234985
Query: 121 ctggaccgcgtgatggctttctggctggagcactcccacgatcgggagcacggg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234984 ctggaccgcgtgatggctttctggctggagcactcccacgatcgggagcacggg 142234931
Score = 174 bits (88), Expect = 7e-41
Identities = 91/92 (98%)
Strand = Plus / Minus
Query: 1111 cagtttcgtgatcccgagtaccgggaatggtttggctacctgaaccgagaggggaaggtt 1170
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 142228105 cagtttcgtgatcccgagtacggggaatggtttggctacctgaaccgagaggggaaggtt 142228046
Query: 1171 gccctcactatcaaggggggtccctttaaagg 1202
||||||||||||||||||||||||||||||||
Sbjct: 142228045 gccctcactatcaaggggggtccctttaaagg 142228014
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 721 cagagggatggacaggctgtgctggagaatgtgtcggaagatggcgaggaactttctggc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142232321 cagagggatggacaggctgtgctggagaatgtgtcggaagatggcgaggaactttctggc 142232262
Query: 781 tgcctggggagacaccagaacccagg 806
||||||||||||||||||||||||||
Sbjct: 142232261 tgcctggggagacaccagaacccagg 142232236
Score = 159 bits (80), Expect = 4e-36
Identities = 80/80 (100%)
Strand = Plus / Minus
Query: 247 caggtgtggatgtactgtcgcctgtaccgcaagcttgagcgcttccaccgccctgagctt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234529 caggtgtggatgtactgtcgcctgtaccgcaagcttgagcgcttccaccgccctgagctt 142234470
Query: 307 ctggatgcggctaaagcagg 326
||||||||||||||||||||
Sbjct: 142234469 ctggatgcggctaaagcagg 142234450
Score = 157 bits (79), Expect = 2e-35
Identities = 79/79 (100%)
Strand = Plus / Minus
Query: 173 ggggcttcttcacgtgcctgggccgcgacgggcgggtgtatgacgacctcaagtacgtct 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142234804 ggggcttcttcacgtgcctgggccgcgacgggcgggtgtatgacgacctcaagtacgtct 142234745
Query: 233 ggctgcaggggaggcaggt 251
|||||||||||||||||||
Sbjct: 142234744 ggctgcaggggaggcaggt 142234726
Score = 127 bits (64), Expect = 2e-26
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 1 tcagctccgtctggcttcctggaggagagggagggttgagcggggggtctccgagtgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142235360 tcagctccgtctggcttcctggaggagagggagggttgagcggggggtctccgagtgtgg 142235301
Query: 61 cagg 64
||||
Sbjct: 142235300 cagg 142235297
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 27,462,064
Number of extensions: 203
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 11
Length of query: 1204
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1183
Effective length of database: 2,808,413,156
Effective search space: 3322352763548
Effective search space used: 3322352763548
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)