Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095743.1| U3 small nucleolar RNA-interacting protein 2... 694 0.0
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 109 5e-24
Alignment gi|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus]. 100 5e-21
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 97 3e-20
Alignment gi|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos t... 90 4e-18
Alignment gi|NP_001193841.1| telomerase protein component 1 [Bos taurus]. 88 2e-17
Alignment gi|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus]. 86 6e-17
Alignment gi|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-li... 85 1e-16
Alignment gi|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, part... 85 1e-16
Alignment gi|NP_001039827.1| pleiotropic regulator 1 [Bos taurus]. 85 2e-16
>ref|NP_001095743.1| U3 small nucleolar RNA-interacting protein 2 [Bos taurus].
Length = 475
Score = 694 bits (1792), Expect = 0.0
Identities = 346/393 (88%), Positives = 354/393 (90%)
Frame = +1
Query: 208 APRKTXXXXXXXXXXTAQEKKLRLXXXXXXXXXXXXXXXXXXXXXXXDQVAGKLKEDVLE 387
A R+T TAQEKKLRL DQVAG+LKEDVLE
Sbjct: 59 ALRRTEEEEEEELEETAQEKKLRLAKVYLEQLRQQEEEKAEAREFEEDQVAGRLKEDVLE 118
Query: 388 QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG 567
QRGRLQKSVAKEIQAP PADIRILRGHQLSITCLV+TPDDLAIFSAAKDCTIIKWSVESG
Sbjct: 119 QRGRLQKSVAKEIQAPDPADIRILRGHQLSITCLVVTPDDLAIFSAAKDCTIIKWSVESG 178
Query: 568 RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT 747
RKLHVIPRAKKG EGQPPGHS+H+LCMAISSDGKYLASGDRSKLILIWEAQSC+HLYTFT
Sbjct: 179 RKLHVIPRAKKGTEGQPPGHSTHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFT 238
Query: 748 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 927
GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV
Sbjct: 239 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 298
Query: 928 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 1107
TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL
Sbjct: 299 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 358
Query: 1108 ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI 1287
ALQREAHGLRGE GLEQPFWVSSVAALLNTDL+ATGSHNNSVRLWQCGEGFRQ DLL DI
Sbjct: 359 ALQREAHGLRGEPGLEQPFWVSSVAALLNTDLVATGSHNNSVRLWQCGEGFRQFDLLYDI 418
Query: 1288 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 1386
PLVGF+NSLKFSSAGDFLVAGVGQEHRLGRWWR
Sbjct: 419 PLVGFVNSLKFSSAGDFLVAGVGQEHRLGRWWR 451
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 109 bits (273), Expect = 5e-24
Identities = 75/308 (24%), Positives = 133/308 (43%), Gaps = 7/308 (2%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
++ H+ + +PD + +A++D + W +SGR L + GH
Sbjct: 14 VKFFGRHRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLR-----------GH 62
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ S DG+ AS + I +W+A + L GH+ +V ++F + QL S
Sbjct: 63 KGPVRFCRFSPDGRLFASTSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLAS 122
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
D+ V +W V + GH+D+V + D C+ G D T+R+W + +
Sbjct: 123 GGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFAPSSDCLATGSWDSTIRMWDLRAGTPG 182
Query: 988 VFY----GHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLE 1155
+F+ GH+G+I + + SG+ D ++ +W S R L +Q + H
Sbjct: 183 IFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHIWKPS-TRSLLIQLKGH--------- 232
Query: 1156 QPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFIN---SLKFSS 1326
WV S+A + +A+ +++ V++W C G C L G +N + F
Sbjct: 233 -ITWVKSIAFSPDGQQLASAGYSHMVKVWDCNTG------KCTETLKGVLNVAHACAFMP 285
Query: 1327 AGDFLVAG 1350
G LV+G
Sbjct: 286 DGKLLVSG 293
>ref|NP_001069398.1| WD repeat-containing protein 69 [Bos taurus].
Length = 415
Score = 99.8 bits (247), Expect = 5e-21
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 4/266 (1%)
Frame = +1
Query: 460 RGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHI 639
RGH I CL P + + + D T W ++SG ++ + GHS+ I
Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLT-----------GHSAEI 222
Query: 640 LCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHD 819
+ ++ ++ G + +G + +WEA + R +YT GH +S F + + S D
Sbjct: 223 ISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMD 282
Query: 820 RSVKVWNVAENSYVETLFGHQDAV--AALDALSRECCVTAGGRDGTVRVWK-IPEESQLV 990
++ K+W+ V TL GH D + + D + + DGT R++ E
Sbjct: 283 KTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGK--LIATASADGTARIFSAATRECVTK 340
Query: 991 FYGHQGSIDSIQLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFW 1167
GH+G I I + +++G+ D + +W + L + L G
Sbjct: 341 LEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQCLQV------LEGHTD-----E 389
Query: 1168 VSSVAALLNTDLIATGSHNNSVRLWQ 1245
+ S A D+I TGS +N+ R+W+
Sbjct: 390 IFSCAFNYKGDIIITGSKDNTCRIWR 415
Score = 70.9 bits (172), Expect = 3e-12
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 6/215 (2%)
Frame = +1
Query: 631 SHILCM---AISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
+HIL + A++ G +G + +W+ S L+T GHR+ V +AF
Sbjct: 90 AHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDK 149
Query: 802 YST-SHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE- 975
+T S D++ K+W+V T GH + L + V G D T ++W I
Sbjct: 150 IATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG 209
Query: 976 ESQLVFYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGL 1152
E GH I S+ + +++G+ D +V +W R + + L G
Sbjct: 210 EEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGR------KVYTLIGHCAE 263
Query: 1153 EQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+SS + LI TGS + + +LW G
Sbjct: 264 -----ISSAVFNWDCSLILTGSMDKTCKLWDAVNG 293
Score = 70.1 bits (170), Expect = 4e-12
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 3/214 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
++LR H L +T + + + + D T W SG +LH + GH
Sbjct: 86 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLE-----------GHR 134
Query: 631 SHILCMAISSD-GKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + +A ++ G +A+G K +W ++ + +TF GH + L+F + + +
Sbjct: 135 NVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVAT 194
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D + K+W++ V TL GH + +L + + G D TV VW+ ++
Sbjct: 195 GSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKV 254
Query: 988 -VFYGHQGSIDSIQLINEEHMV-SGADDGSVALW 1083
GH I S + ++ +G+ D + LW
Sbjct: 255 YTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLW 288
Score = 67.0 bits (162), Expect = 4e-11
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 2/215 (0%)
Frame = +1
Query: 445 DIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPG 624
++ L GH I L I + + D T+ W ++GRK++ + G
Sbjct: 211 EVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTL-----------IG 259
Query: 625 HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLY 804
H + I + D + +G K +W+A + + + T TGH D + F +
Sbjct: 260 HCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIA 319
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQ 984
+ S D + ++++ A V L GH+ ++ + + + G D T R+W
Sbjct: 320 TASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTARIWDAQTGQC 379
Query: 985 L-VFYGHQGSIDSIQL-INEEHMVSGADDGSVALW 1083
L V GH I S + +++G+ D + +W
Sbjct: 380 LQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 97.1 bits (240), Expect = 3e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 374 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 420
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 421 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 476
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 477 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 534
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 535 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 571
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 397
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 398 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 456 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 510
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 559 TSSDDGTVKLWDLKTGEFIRNL 580
Score = 76.3 bits (186), Expect = 6e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 298 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 354
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 355 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 412
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 413 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 465
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 466 SLQFDGIH-------VVSGSLDTSIRVWDVETG 491
>ref|NP_001076944.1| F-box/WD repeat-containing protein 1A [Bos taurus].
Length = 569
Score = 90.1 bits (222), Expect = 4e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 301 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 347
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 348 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 403
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 404 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 461
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 462 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 497
Score = 63.5 bits (153), Expect = 4e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 276 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 333
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 334 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 391
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 392 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 436
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 437 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 467
>ref|NP_001193841.1| telomerase protein component 1 [Bos taurus].
Length = 2626
Score = 88.2 bits (217), Expect = 2e-17
Identities = 82/280 (29%), Positives = 132/280 (47%), Gaps = 16/280 (5%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKG--AEGQPPGH 627
+L H+ + L + + LAI A++D T+ W R+L ++P+ + + GH
Sbjct: 2015 LLSRHRKPVLGLATSQELLAI--ASEDFTVRLWP----RQLLMLPQKTEDFPRSTELRGH 2068
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRH---LYTFTG-HRDAVSGLAFRRGTH 795
+ C + S+DG LA+G R + +L W+ ++ + + +F+ HRD V+G A+ + +
Sbjct: 2069 EGPVSCCSFSTDGCRLATGGRDRSLLCWDVRTPKAPVLICSFSACHRDWVTGCAWTKDS- 2127
Query: 796 QLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE 975
L S S D SV +W+ + GHQ AV+A+ A+ V + GRDGT++VW
Sbjct: 2128 LLVSCSSDGSVALWDPESRQQLGHFLGHQHAVSAVVAVEEH--VVSVGRDGTLKVWDHQG 2185
Query: 976 ESQLVFYGHQGSIDSI----------QLINEEHMVSGADDGSVALWGLSKKRPLALQREA 1125
H G I Q +E +V+ DG+ LW PL L +
Sbjct: 2186 VEMTSIPAHSGPISHCVAALEPRAAGQPGSELLVVTVGLDGATRLW-----HPL-LVFQT 2239
Query: 1126 HGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQ 1245
H L G G VS+ A + L+ T S + S+RLWQ
Sbjct: 2240 HTLLGHSGP-----VSAAAVSETSGLLLTTSEDGSLRLWQ 2274
Score = 52.8 bits (125), Expect = 7e-07
Identities = 65/304 (21%), Positives = 113/304 (37%), Gaps = 42/304 (13%)
Frame = +1
Query: 457 LRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGR--KLHVIPRAKKGAEGQPPGH- 627
++ HQ IT ++PD + + + W V G+ H P+ P G
Sbjct: 1763 IQAHQYQITGCCLSPDRRLLATVCLGGGLKLWDVVRGQLASQHTCPKPLNCVAFHPEGQV 1822
Query: 628 ---------------------------SSHILCMAISSDGKYLASGDRSKLILIWEAQSC 726
+ + +A G+ +A G +++ +W Q
Sbjct: 1823 IAVGGWAGSFSFFHVDGLRVTKELGAPGASVRTLAFGVPGRVVAVGRLDRMVELWAWQEG 1882
Query: 727 RHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDA 906
L F H+ V+ F R QL + D V+VW+ + L + A A
Sbjct: 1883 ARLAAFPAHQGFVATALFLRSGCQLLTAGEDGKVQVWSGSLGRPRGCLGSPHLSPALSVA 1942
Query: 907 LSRECC-VTAGGRDGTVRVWKIPEESQLVFYGHQG-----SIDSIQLINEEHMVSGADDG 1068
LS + V G R +R+ +I SQ G QG ++ ++ ++ + +VSGA+DG
Sbjct: 1943 LSPDGDQVAVGYRADGIRICRISSASQ----GAQGQALDVAVSALTWLSPKVLVSGAEDG 1998
Query: 1069 SVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSS------VAALLNTDLIATGSHNNS 1230
++ W L + G Q W+ S + + +L+A S + +
Sbjct: 1999 ALQGWLL-----------------QGGTLQSLWLLSRHRKPVLGLATSQELLAIASEDFT 2041
Query: 1231 VRLW 1242
VRLW
Sbjct: 2042 VRLW 2045
>ref|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus].
Length = 371
Score = 86.3 bits (212), Expect = 6e-17
Identities = 68/219 (31%), Positives = 101/219 (46%), Gaps = 9/219 (4%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSS 633
+L+GH+ +T + +D A F+ + DCTI KW V +G+ L V GH+S
Sbjct: 52 LLQGHESYVTFCQL--EDEAAFTCSADCTIRKWDVLTGQCLQVF-----------RGHTS 98
Query: 634 HILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGT------- 792
+ + ++ + + +S DR+ W + F GH + V LA+
Sbjct: 99 IVNRILVADNQLFSSSYDRT--ARAWSVDRGQVAREFRGHCNCVLTLAYAGAPCVEEAVA 156
Query: 793 -HQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI 969
L + S D + KVW VA +TL GH AV L + G D TVR W I
Sbjct: 157 GGLLVTGSTDATAKVWQVASGCCHQTLRGHTGAVLCLVLDAPGRTAFTGSTDATVRAWDI 216
Query: 970 PEESQL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALW 1083
QL VF HQGS+ ++L+N H+ SG+ D +V W
Sbjct: 217 LSGQQLRVFREHQGSVICLELVN-RHVYSGSADRTVKCW 254
Score = 70.1 bits (170), Expect = 4e-12
Identities = 45/187 (24%), Positives = 81/187 (43%)
Frame = +1
Query: 409 SVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIP 588
+ AK Q + + LRGH ++ CLV+ F+ + D T+ W + SG++L V
Sbjct: 167 ATAKVWQVASGCCHQTLRGHTGAVLCLVLDAPGRTAFTGSTDATVRAWDILSGQQLRVFR 226
Query: 589 RAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVS 768
H ++C+ + + Y S DR+ + W A + + TFT HR +VS
Sbjct: 227 E-----------HQGSVICLELVNRHVYSGSADRT--VKCWLADTGERVRTFTAHRHSVS 273
Query: 769 GLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDG 948
L + GT L++ S D + ++ + GH + + + + DG
Sbjct: 274 ALKYHAGT--LFTGSGDARARAFDAQSGALRRVFRGHAFVINCIQVHGQ--VLYTASHDG 329
Query: 949 TVRVWKI 969
+R+W +
Sbjct: 330 ALRLWDV 336
>ref|XP_002707838.1| PREDICTED: PCAF associated factor 65 beta-like [Bos taurus].
Length = 589
Score = 85.1 bits (209), Expect = 1e-16
Identities = 50/172 (29%), Positives = 76/172 (44%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSS 633
+ +GH + L I+P L SA+ D T WS + L + GH +
Sbjct: 379 LYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYA-----------GHLA 427
Query: 634 HILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTS 813
+ C+ + YLA+G K + +W Q + FTGHR V LAF L S
Sbjct: 428 DVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAG 487
Query: 814 HDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI 969
D+ +K+W++A + + L GH D + +L V + D +VRVW I
Sbjct: 488 EDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDI 539
Score = 68.6 bits (166), Expect = 1e-11
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 18/267 (6%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH + +D L S I W+ S + + GH V L H L
Sbjct: 340 GHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDI--SPHSL 397
Query: 802 Y--STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE 975
Y S SHDR+ ++W+ + GH V + + G D TVR+W +
Sbjct: 398 YFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQ 457
Query: 976 -ESQLVFYGHQGSIDSIQLI-NEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQG 1149
S +F GH+G + S+ N +++ S +D + LW L+ L +E G
Sbjct: 458 GNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG---TLYKELRGHTDN-- 512
Query: 1150 LEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIP-------LVGF-- 1302
++S+ ++ L+A+ S +NSVR+W C P LVG
Sbjct: 513 ------ITSLTFSPDSSLVASASMDNSVRVWDIRSSH------CSTPADGSSSELVGVYT 560
Query: 1303 -----INSLKFSSAGDFLVAGVGQEHR 1368
+ S++F + LV G+ QE++
Sbjct: 561 GQMSNVLSVQFMACNLLLVTGITQENQ 587
Score = 68.2 bits (165), Expect = 2e-11
Identities = 36/132 (27%), Positives = 61/132 (46%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
+RI GH + C+ P+ + + + D T+ WS + G + + GH
Sbjct: 419 LRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLF-----------TGH 467
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+L +A S +GKYLAS + + +W+ S GH D ++ L F + + S
Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVAS 527
Query: 808 TSHDRSVKVWNV 843
S D SV+VW++
Sbjct: 528 ASMDNSVRVWDI 539
>ref|XP_587553.3| PREDICTED: PCAF associated factor 65 beta, partial [Bos taurus].
Length = 265
Score = 85.1 bits (209), Expect = 1e-16
Identities = 50/172 (29%), Positives = 76/172 (44%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSS 633
+ +GH + L I+P L SA+ D T WS + L + GH +
Sbjct: 55 LYQGHAYPVWDLDISPHSLYFASASHDRTARLWSFDRTYPLRIYA-----------GHLA 103
Query: 634 HILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTS 813
+ C+ + YLA+G K + +W Q + FTGHR V LAF L S
Sbjct: 104 DVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAG 163
Query: 814 HDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI 969
D+ +K+W++A + + L GH D + +L V + D +VRVW I
Sbjct: 164 EDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDI 215
Score = 68.6 bits (166), Expect = 1e-11
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 18/267 (6%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH + +D L S I W+ S + + GH V L H L
Sbjct: 16 GHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDI--SPHSL 73
Query: 802 Y--STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE 975
Y S SHDR+ ++W+ + GH V + + G D TVR+W +
Sbjct: 74 YFASASHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQ 133
Query: 976 -ESQLVFYGHQGSIDSIQLI-NEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQG 1149
S +F GH+G + S+ N +++ S +D + LW L+ L +E G
Sbjct: 134 GNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG---TLYKELRGHTDN-- 188
Query: 1150 LEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIP-------LVGF-- 1302
++S+ ++ L+A+ S +NSVR+W C P LVG
Sbjct: 189 ------ITSLTFSPDSSLVASASMDNSVRVWDIRSSH------CSTPADGSSSELVGVYT 236
Query: 1303 -----INSLKFSSAGDFLVAGVGQEHR 1368
+ S++F + LV G+ QE++
Sbjct: 237 GQMSNVLSVQFMACNLLLVTGITQENQ 263
Score = 68.2 bits (165), Expect = 2e-11
Identities = 36/132 (27%), Positives = 61/132 (46%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
+RI GH + C+ P+ + + + D T+ WS + G + + GH
Sbjct: 95 LRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSVRLF-----------TGH 143
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+L +A S +GKYLAS + + +W+ S GH D ++ L F + + S
Sbjct: 144 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLVAS 203
Query: 808 TSHDRSVKVWNV 843
S D SV+VW++
Sbjct: 204 ASMDNSVRVWDI 215
>ref|NP_001039827.1| pleiotropic regulator 1 [Bos taurus].
Length = 513
Score = 84.7 bits (208), Expect = 2e-16
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 2/272 (0%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGR-KLHVIPRAKKGAEGQPPGH 627
R++ GH + C+ + P + + + D TI W + SG+ KL + GH
Sbjct: 197 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSL------------TGH 244
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
S + + +S+ YL S K + W+ + + + + GH AV GL L +
Sbjct: 245 ISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVT 304
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWK-IPEESQ 984
S D + ++W+V + V TL GH +AVA + + E + G D T+R+W + +++
Sbjct: 305 CSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTR 364
Query: 985 LVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPF 1164
+ H+ S+ ++ L + + ++ W + L G +
Sbjct: 365 VTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFI------QNLSGHNAIINTL 418
Query: 1165 WVSSVAALLNTDLIATGSHNNSVRLWQCGEGF 1260
V+S L+ +G+ N ++ LW G+
Sbjct: 419 TVNSDGVLV------SGADNGTMHLWDWRTGY 444
Score = 55.8 bits (133), Expect = 9e-08
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +1
Query: 745 TGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECC 924
+GH V +A G + S DR++K+W++A +L GH V + +R
Sbjct: 200 SGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPY 259
Query: 925 VTAGGRDGTVRVWKIPEESQLV--FYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSK 1095
+ + G D V+ W + E ++++ ++GH ++ + L + +V+ + D + +W +
Sbjct: 260 LFSCGEDKQVKCWDL-EYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRT 318
Query: 1096 KRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDL 1275
K H L G V++V I TGSH+ ++RLW G ++ L
Sbjct: 319 K------ASVHTLSGHTNA-----VATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTL 367
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/172 (18%), Positives = 74/172 (43%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
IR GH ++ L + P + + ++D T W V + +H + GH
Sbjct: 280 IRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTL-----------SGH 328
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
++ + + + + +G I +W+ + + T T H+ +V + H ++
Sbjct: 329 TNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVL-HPRHYTFA 387
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVW 963
+ ++K W + S+++ L GH + L ++ + + +G +GT+ +W
Sbjct: 388 SGSPDNIKQWKFPDGSFIQNLSGHNAIINTL-TVNSDGVLVSGADNGTMHLW 438
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 52,198,118
Number of extensions: 1595334
Number of successful extensions: 9927
Number of sequences better than 1.0e-05: 118
Number of HSP's gapped: 8929
Number of HSP's successfully gapped: 250
Length of query: 462
Length of database: 17,681,374
Length adjustment: 106
Effective length of query: 356
Effective length of database: 14,174,046
Effective search space: 5045960376
Effective search space used: 5045960376
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiar... 97 4e-20
Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 97 4e-20
Alignment gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor... 97 4e-20
Alignment gi|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isofor... 97 4e-20
Alignment gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor... 97 4e-20
Alignment gi|XP_861929.1| PREDICTED: similar to F-box/WD-repeat protein 1... 90 5e-18
Alignment gi|XP_543980.2| PREDICTED: similar to F-box/WD-repeat protein 1... 90 5e-18
Alignment gi|XP_855313.1| PREDICTED: similar to Pleiotropic regulator 1 [... 85 2e-16
Alignment gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ... 84 3e-16
Alignment gi|XP_868519.1| PREDICTED: similar to platelet-activating facto... 84 4e-16
>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris].
Length = 415
Score = 97.1 bits (240), Expect = 4e-20
Identities = 65/266 (24%), Positives = 114/266 (42%), Gaps = 4/266 (1%)
Frame = +1
Query: 460 RGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHI 639
RGH I CL P + + + D T W ++SG ++ + GHS+ I
Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVFTLR-----------GHSAEI 222
Query: 640 LCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHD 819
+ ++ ++ G + +G + +WEA + R +YT GH +S F + + S D
Sbjct: 223 ISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMD 282
Query: 820 RSVKVWNVAENSYVETLFGHQDAV--AALDALSRECCVTAGGRDGTVRVWKIPEESQLV- 990
++ +W+ + V TL GH D + + D + + DGT RV+ L
Sbjct: 283 KTCMLWDASNGKCVATLTGHDDEILDSCFDYTGK--LIATASADGTARVFSAATRKCLTK 340
Query: 991 FYGHQGSIDSIQLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFW 1167
GH+G I I + +++G+ D + +W + L + L G
Sbjct: 341 LEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQCLQV------LEGHTD-----E 389
Query: 1168 VSSVAALLNTDLIATGSHNNSVRLWQ 1245
+ S A D+I TGS +N+ R+W+
Sbjct: 390 IFSCAFNYKGDIIITGSKDNTCRIWR 415
Score = 73.6 bits (179), Expect = 4e-13
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 8/217 (3%)
Frame = +1
Query: 631 SHILCM---AISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
+HIL + A++ G +G + +W+ S L+T GHR+ V +AF
Sbjct: 90 AHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDK 149
Query: 802 YST-SHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE- 975
+T S D++ K+W+V T GH + L + V G D T ++W I
Sbjct: 150 IATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSG 209
Query: 976 ESQLVFYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGL 1152
E GH I S+ + + +V+G+ D +VA+W R + + L G
Sbjct: 210 EEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGR------KVYTLIGH--- 260
Query: 1153 EQPFWVSSVAALLNTD--LIATGSHNNSVRLWQCGEG 1257
+AL N D LI TGS + + LW G
Sbjct: 261 ----CAEISSALFNWDCSLILTGSMDKTCMLWDASNG 293
Score = 72.4 bits (176), Expect = 1e-12
Identities = 54/224 (24%), Positives = 99/224 (44%), Gaps = 4/224 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
++LR H L +T + + + + D T W SG +LH + GH
Sbjct: 86 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLE-----------GHR 134
Query: 631 SHILCMAISSD-GKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + +A ++ G +A+G K +W ++ + +TF GH + L+F + + +
Sbjct: 135 NVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVAT 194
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D + K+W++ V TL GH + +L + + G D TV VW+ ++
Sbjct: 195 GSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKV 254
Query: 988 -VFYGHQGSIDSIQLINEE--HMVSGADDGSVALWGLSKKRPLA 1110
GH I S L N + +++G+ D + LW S + +A
Sbjct: 255 YTLIGHCAEISS-ALFNWDCSLILTGSMDKTCMLWDASNGKCVA 297
Score = 69.7 bits (169), Expect = 6e-12
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 2/215 (0%)
Frame = +1
Query: 445 DIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPG 624
++ LRGH I L I + + D T+ W ++GRK++ + G
Sbjct: 211 EVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTL-----------IG 259
Query: 625 HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLY 804
H + I + D + +G K ++W+A + + + T TGH D + F +
Sbjct: 260 HCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIA 319
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQ 984
+ S D + +V++ A + L GH+ ++ + + + G D T R+W
Sbjct: 320 TASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETARIWDAQTGQC 379
Query: 985 L-VFYGHQGSIDSIQL-INEEHMVSGADDGSVALW 1083
L V GH I S + +++G+ D + +W
Sbjct: 380 LQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414
>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
familiaris].
Length = 589
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 336 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 382
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 383 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 438
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 439 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 496
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 497 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 533
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 313 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 359
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 360 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 417
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 418 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 472
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 473 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 520
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 521 TSSDDGTVKLWDLKTGEFIRNL 542
Score = 76.3 bits (186), Expect = 7e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 260 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 316
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 317 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 374
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 375 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 427
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 428 SLQFDGIH-------VVSGSLDTSIRVWDVETG 453
>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
familiaris].
Length = 637
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 384 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 430
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 431 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 486
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 487 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 544
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 545 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 581
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 361 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 407
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 408 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 465
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 466 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 520
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 521 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 568
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 569 TSSDDGTVKLWDLKTGEFIRNL 590
Score = 76.3 bits (186), Expect = 7e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 308 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 364
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 365 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 422
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 423 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 475
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 476 SLQFDGIH-------VVSGSLDTSIRVWDVETG 501
>ref|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Canis
familiaris].
Length = 279
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 26 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 72
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 73 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 128
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 129 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 186
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 187 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 223
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 3 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 49
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 50 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 107
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 108 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 162
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 163 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 210
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 211 TSSDDGTVKLWDLKTGEFIRNL 232
>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
familiaris].
Length = 627
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 374 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 420
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 421 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 476
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 477 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 534
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 535 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 571
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 397
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 398 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 456 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 510
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 559 TSSDDGTVKLWDLKTGEFIRNL 580
Score = 76.3 bits (186), Expect = 7e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 298 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 354
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 355 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 412
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 413 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 465
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 466 SLQFDGIH-------VVSGSLDTSIRVWDVETG 491
>ref|XP_861929.1| PREDICTED: similar to F-box/WD-repeat protein 1A (F-box and
WD-repeats protein beta-TrCP) (E3RSIkappaB)
(pIkappaBalpha-E3 receptor subunit) isoform 3 [Canis
familiaris].
Length = 349
Score = 90.1 bits (222), Expect = 5e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 81 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 127
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 128 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 183
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 184 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 241
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 242 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 277
Score = 63.5 bits (153), Expect = 5e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 56 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 113
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 114 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 171
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 172 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 216
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 217 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 247
>ref|XP_543980.2| PREDICTED: similar to F-box/WD-repeat protein 1A (F-box and
WD-repeats protein beta-TrCP) (E3RSIkappaB)
(pIkappaBalpha-E3 receptor subunit) isoform 1 [Canis
familiaris].
Length = 506
Score = 90.1 bits (222), Expect = 5e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 238 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 284
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 285 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 340
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 341 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 398
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 399 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 434
Score = 63.5 bits (153), Expect = 5e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 213 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 270
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 271 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 328
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 329 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 373
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 374 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 404
>ref|XP_855313.1| PREDICTED: similar to Pleiotropic regulator 1 [Canis familiaris].
Length = 547
Score = 84.7 bits (208), Expect = 2e-16
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 2/272 (0%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGR-KLHVIPRAKKGAEGQPPGH 627
R++ GH + C+ + P + + + D TI W + SG+ KL + GH
Sbjct: 231 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSL------------TGH 278
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
S + + +S+ YL S K + W+ + + + + GH AV GL L +
Sbjct: 279 ISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVT 338
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWK-IPEESQ 984
S D + ++W+V + V TL GH +AVA + + E + G D T+R+W + +++
Sbjct: 339 CSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTR 398
Query: 985 LVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPF 1164
+ H+ S+ ++ L + + ++ W + L G +
Sbjct: 399 VTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFI------QNLSGHNAIINTL 452
Query: 1165 WVSSVAALLNTDLIATGSHNNSVRLWQCGEGF 1260
V+S L+ +G+ N ++ LW G+
Sbjct: 453 TVNSDGVLV------SGADNGTMHLWDWRTGY 478
Score = 55.8 bits (133), Expect = 9e-08
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +1
Query: 745 TGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECC 924
+GH V +A G + S DR++K+W++A +L GH V + +R
Sbjct: 234 SGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPY 293
Query: 925 VTAGGRDGTVRVWKIPEESQLV--FYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSK 1095
+ + G D V+ W + E ++++ ++GH ++ + L + +V+ + D + +W +
Sbjct: 294 LFSCGEDKQVKCWDL-EYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRT 352
Query: 1096 KRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDL 1275
K H L G V++V I TGSH+ ++RLW G ++ L
Sbjct: 353 K------ASVHTLSGHTNA-----VATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTL 401
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/172 (18%), Positives = 74/172 (43%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
IR GH ++ L + P + + ++D T W V + +H + GH
Sbjct: 314 IRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTL-----------SGH 362
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
++ + + + + +G I +W+ + + T T H+ +V + H ++
Sbjct: 363 TNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVL-HPRHYTFA 421
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVW 963
+ ++K W + S+++ L GH + L ++ + + +G +GT+ +W
Sbjct: 422 SGSPDNIKQWKFPDGSFIQNLSGHNAIINTL-TVNSDGVLVSGADNGTMHLW 472
>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II
p300/CBP-associated factor-associated factor 65 kDa
subunit 5L (PCAF associated factor 65 beta) (PAF65-beta)
[Canis familiaris].
Length = 589
Score = 84.0 bits (206), Expect = 3e-16
Identities = 49/172 (28%), Positives = 76/172 (44%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSS 633
+ +GH + L I+P L S + D T WS + L + GH +
Sbjct: 379 LYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYA-----------GHLA 427
Query: 634 HILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTS 813
+ C+ + YLA+G K + +W AQ + FTGHR V LAF L S
Sbjct: 428 DVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAG 487
Query: 814 HDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI 969
D+ +K+W++A + + L GH D + +L + + D +VRVW I
Sbjct: 488 EDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDI 539
Score = 70.9 bits (172), Expect = 3e-12
Identities = 39/140 (27%), Positives = 65/140 (46%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
+RI GH + C+ P+ + + + D T+ WS + G + + GH
Sbjct: 419 LRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLF-----------TGH 467
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+L +A S +GKYLAS + + +W+ S GH D ++ L F + + S
Sbjct: 468 RGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFSPDSSLIAS 527
Query: 808 TSHDRSVKVWNVAENSYVET 867
S D SV+VW++ N+Y T
Sbjct: 528 ASMDNSVRVWDI-RNTYCST 546
Score = 67.8 bits (164), Expect = 2e-11
Identities = 64/265 (24%), Positives = 106/265 (40%), Gaps = 16/265 (6%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH + +D L S I W+ S + + GH V L +
Sbjct: 340 GHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYSLYF 399
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE-E 978
S SHDR+ ++W+ + GH V + + G D TVR+W +
Sbjct: 400 ASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGN 459
Query: 979 SQLVFYGHQGSIDSIQLI-NEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLE 1155
S +F GH+G + S+ N +++ S +D + LW L+ L +E G
Sbjct: 460 SVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG---TLYKELRGHTDN---- 512
Query: 1156 QPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIP-------LVGF---- 1302
++S+ ++ LIA+ S +NSVR+W + C P LVG
Sbjct: 513 ----ITSLTFSPDSSLIASASMDNSVRVWDIRNTY------CSTPADGSSGELVGVYTGQ 562
Query: 1303 ---INSLKFSSAGDFLVAGVGQEHR 1368
+ S++F + LV G+ QE++
Sbjct: 563 MSNVLSVQFMACNLLLVTGITQENQ 587
>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 5 [Canis familiaris].
Length = 415
Score = 83.6 bits (205), Expect = 4e-16
Identities = 72/309 (23%), Positives = 125/309 (40%), Gaps = 4/309 (1%)
Frame = +1
Query: 433 PAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEG 612
P P + L GH+ +T ++ P + SA++D TI W E+G E
Sbjct: 96 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-----------DFER 144
Query: 613 QPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGT 792
GH+ + ++ GK LAS I +W+ Q + T GH VS +A
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNG 204
Query: 793 HQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI- 969
+ S S D+++K+W V V+T GH++ V + + + D TVRVW +
Sbjct: 205 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264
Query: 970 PEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQG 1149
+E + H+ ++ I E S ++ G ++ P + G
Sbjct: 265 TKECKAELREHEHVVECISWAPESSYSSISE-----ATGSEEENPRT---------KKSG 310
Query: 1150 LEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVG---FINSLKF 1320
PF +S GS + ++++W G +C + LVG ++ + F
Sbjct: 311 KPGPFLLS-------------GSRDKTIKMWDVSTG------MCLMTLVGHDNWVRGVLF 351
Query: 1321 SSAGDFLVA 1347
S G F+++
Sbjct: 352 HSGGKFILS 360
Score = 64.7 bits (156), Expect = 2e-10
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 14/187 (7%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSV-------ESGRKLHVI------P 588
++ GH+ + + D I S + D T+ W V E HV+ P
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286
Query: 589 RAKKGAEGQPPG-HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAV 765
+ + + G + G +L SG R K I +W+ + L T GH + V
Sbjct: 287 ESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 346
Query: 766 SGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRD 945
G+ F G + S + D++++VW+ ++TL H+ V +LD V G D
Sbjct: 347 RGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD 406
Query: 946 GTVRVWK 966
TV+VW+
Sbjct: 407 QTVKVWE 413
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 54,311,747
Number of extensions: 1632602
Number of successful extensions: 11000
Number of sequences better than 1.0e-05: 137
Number of HSP's gapped: 9789
Number of HSP's successfully gapped: 310
Length of query: 462
Length of database: 18,874,504
Length adjustment: 106
Effective length of query: 356
Effective length of database: 15,340,888
Effective search space: 5461356128
Effective search space used: 5461356128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003358503.1| PREDICTED: u3 small nucleolar RNA-interactin... 717 0.0
Alignment gi|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-l... 108 9e-24
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 108 9e-24
Alignment gi|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protei... 97 2e-20
Alignment gi|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protei... 97 2e-20
Alignment gi|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protei... 97 2e-20
Alignment gi|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protei... 90 3e-18
Alignment gi|XP_001927242.1| PREDICTED: telomerase protein component 1-li... 86 4e-17
Alignment gi|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus... 86 6e-17
Alignment gi|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [S... 83 3e-16
>ref|XP_003358503.1| PREDICTED: u3 small nucleolar RNA-interacting protein 2-like [Sus
scrofa].
Length = 475
Score = 717 bits (1850), Expect = 0.0
Identities = 360/393 (91%), Positives = 360/393 (91%)
Frame = +1
Query: 208 APRKTXXXXXXXXXXTAQEKKLRLXXXXXXXXXXXXXXXXXXXXXXXDQVAGKLKEDVLE 387
APRKT TAQEKKLRL DQVAGKLKEDVLE
Sbjct: 59 APRKTEEEEEEELEETAQEKKLRLAKLYLEQLKQQEEEKAEAREFEEDQVAGKLKEDVLE 118
Query: 388 QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG 567
QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG
Sbjct: 119 QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG 178
Query: 568 RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT 747
RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT
Sbjct: 179 RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT 238
Query: 748 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 927
GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV
Sbjct: 239 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 298
Query: 928 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 1107
TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL
Sbjct: 299 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 358
Query: 1108 ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI 1287
ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI
Sbjct: 359 ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI 418
Query: 1288 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 1386
PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR
Sbjct: 419 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 451
>ref|XP_003353713.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 108 bits (269), Expect = 9e-24
Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 4/305 (1%)
Frame = +1
Query: 466 HQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILC 645
H+ + +PD + +A++D + W +SGR L + GH+ +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLG-----------GHTGPVKF 68
Query: 646 MAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRS 825
S DG+ AS I +W+ L GH+ +V ++F + QL S D+
Sbjct: 69 CRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKR 128
Query: 826 VKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY--- 996
V +W V + L GH+D++ + D C+ G D T+R+W + + +F+
Sbjct: 129 VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQEL 188
Query: 997 -GHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVS 1173
GH+G+I + + SG+ D ++ +W S R L +Q + H WV
Sbjct: 189 EGHRGNISCLCFSAFGLLASGSWDKTIHIWKPS-TRSLLVQLKGH----------VTWVK 237
Query: 1174 SVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSAGDFLVAGV 1353
S+A + +A+ ++++V++W C G R D L + + +S F+ G LV+G
Sbjct: 238 SIAFSPDGLQLASAGYSHTVKVWDCNTG-RCTDTLKGV--LDVAHSCAFTPDGKLLVSGT 294
Query: 1354 GQEHR 1368
+ R
Sbjct: 295 ADQAR 299
Score = 78.2 bits (191), Expect = 1e-14
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 5/220 (2%)
Frame = +1
Query: 457 LRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSH 636
L GH + +PD S + DCTI W V L V+ GH
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVL-----------KGHQRS 107
Query: 637 ILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSH 816
+ ++ S D K LASG K +++WE QS + L GHRD++ F + L + S
Sbjct: 108 VETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSW 167
Query: 817 DRSVKVWNVAENS---YVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
D ++++W++ + + + L GH+ ++ L S + +G D T+ +WK S L
Sbjct: 168 DSTIRMWDLRGGTGAIFHQELEGHRGNISCL-CFSAFGLLASGSWDKTIHIWKPSTRSLL 226
Query: 988 V-FYGHQGSIDSIQLINEE-HMVSGADDGSVALWGLSKKR 1101
V GH + SI + + S +V +W + R
Sbjct: 227 VQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 266
Score = 61.2 bits (147), Expect = 1e-09
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 34/199 (17%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKL-HVIPRAK--------- 597
+++L+GHQ S+ + +PD + S D ++ W V+SG+ L H++
Sbjct: 98 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAP 157
Query: 598 -------------------KGAEG-----QPPGHSSHILCMAISSDGKYLASGDRSKLIL 705
+G G + GH +I C+ S+ G LASG K I
Sbjct: 158 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIH 216
Query: 706 IWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQD 885
IW+ + L GH V +AF QL S + +VKVW+ +TL G D
Sbjct: 217 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 276
Query: 886 AVAALDALSRECCVTAGGR 942
++ C T G+
Sbjct: 277 -------VAHSCAFTPDGK 288
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 108 bits (269), Expect = 9e-24
Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 4/305 (1%)
Frame = +1
Query: 466 HQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILC 645
H+ + +PD + +A++D + W +SGR L + GH+ +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLG-----------GHTGPVKF 68
Query: 646 MAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRS 825
S DG+ AS I +W+ L GH+ +V ++F + QL S D+
Sbjct: 69 CRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKR 128
Query: 826 VKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY--- 996
V +W V + L GH+D++ + D C+ G D T+R+W + + +F+
Sbjct: 129 VMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQEL 188
Query: 997 -GHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVS 1173
GH+G+I + + SG+ D ++ +W S R L +Q + H WV
Sbjct: 189 EGHRGNISCLCFSAFGLLASGSWDKTIHIWKPS-TRSLLVQLKGH----------VTWVK 237
Query: 1174 SVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSAGDFLVAGV 1353
S+A + +A+ ++++V++W C G R D L + + +S F+ G LV+G
Sbjct: 238 SIAFSPDGLQLASAGYSHTVKVWDCNTG-RCTDTLKGV--LDVAHSCAFTPDGKLLVSGT 294
Query: 1354 GQEHR 1368
+ R
Sbjct: 295 ADQAR 299
Score = 78.2 bits (191), Expect = 1e-14
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 5/220 (2%)
Frame = +1
Query: 457 LRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSH 636
L GH + +PD S + DCTI W V L V+ GH
Sbjct: 59 LGGHTGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVL-----------KGHQRS 107
Query: 637 ILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSH 816
+ ++ S D K LASG K +++WE QS + L GHRD++ F + L + S
Sbjct: 108 VETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSW 167
Query: 817 DRSVKVWNVAENS---YVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
D ++++W++ + + + L GH+ ++ L S + +G D T+ +WK S L
Sbjct: 168 DSTIRMWDLRGGTGAIFHQELEGHRGNISCL-CFSAFGLLASGSWDKTIHIWKPSTRSLL 226
Query: 988 V-FYGHQGSIDSIQLINEE-HMVSGADDGSVALWGLSKKR 1101
V GH + SI + + S +V +W + R
Sbjct: 227 VQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 266
Score = 61.2 bits (147), Expect = 1e-09
Identities = 51/199 (25%), Positives = 80/199 (40%), Gaps = 34/199 (17%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKL-HVIPRAK--------- 597
+++L+GHQ S+ + +PD + S D ++ W V+SG+ L H++
Sbjct: 98 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAP 157
Query: 598 -------------------KGAEG-----QPPGHSSHILCMAISSDGKYLASGDRSKLIL 705
+G G + GH +I C+ S+ G LASG K I
Sbjct: 158 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIH 216
Query: 706 IWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQD 885
IW+ + L GH V +AF QL S + +VKVW+ +TL G D
Sbjct: 217 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 276
Query: 886 AVAALDALSRECCVTAGGR 942
++ C T G+
Sbjct: 277 -------VAHSCAFTPDGK 288
>ref|XP_003362067.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 3 [Sus
scrofa].
Length = 589
Score = 97.1 bits (240), Expect = 2e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 336 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 382
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 383 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 438
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 439 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 496
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 497 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 533
Score = 79.7 bits (195), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 313 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 359
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 360 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 417
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 418 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 472
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 473 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 520
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 521 TSSDDGTVKLWDLKTGEFIRNL 542
Score = 71.6 bits (174), Expect = 1e-12
Identities = 58/213 (27%), Positives = 86/213 (40%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ SG + +W A + + L T GH V R +
Sbjct: 260 GHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 316
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 317 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 374
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 375 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 427
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 428 SLQFDGIH-------VVSGSLDTSIRVWDVETG 453
>ref|XP_003362066.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 2 [Sus
scrofa].
Length = 705
Score = 97.1 bits (240), Expect = 2e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 452 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 498
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 499 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 554
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 555 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 612
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 613 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 649
Score = 79.7 bits (195), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 429 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 475
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 476 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 533
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 534 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 588
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 589 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 636
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 637 TSSDDGTVKLWDLKTGEFIRNL 658
Score = 71.6 bits (174), Expect = 1e-12
Identities = 58/213 (27%), Positives = 86/213 (40%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ SG + +W A + + L T GH V R +
Sbjct: 376 GHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 432
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 433 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 490
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 491 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 543
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 544 SLQFDGIH-------VVSGSLDTSIRVWDVETG 569
>ref|XP_003362065.1| PREDICTED: f-box/WD repeat-containing protein 7 isoform 1 [Sus
scrofa].
Length = 627
Score = 97.1 bits (240), Expect = 2e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 374 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 420
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 421 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 476
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 477 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 534
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 535 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 571
Score = 79.7 bits (195), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 397
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 398 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 456 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 510
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 559 TSSDDGTVKLWDLKTGEFIRNL 580
Score = 71.6 bits (174), Expect = 1e-12
Identities = 58/213 (27%), Positives = 86/213 (40%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ SG + +W A + + L T GH V R +
Sbjct: 298 GHDDHVIT-CXXXXXXXXXSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 354
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 355 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 412
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 413 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 465
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 466 SLQFDGIH-------VVSGSLDTSIRVWDVETG 491
>ref|XP_001924863.3| PREDICTED: f-box/WD repeat-containing protein 1A, partial [Sus
scrofa].
Length = 497
Score = 90.1 bits (222), Expect = 3e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 229 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 275
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 276 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 331
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 332 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 389
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 390 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 425
Score = 63.5 bits (153), Expect = 3e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 204 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 261
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 262 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 319
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 320 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 364
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 365 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 395
>ref|XP_001927242.1| PREDICTED: telomerase protein component 1-like [Sus scrofa].
Length = 2599
Score = 86.3 bits (212), Expect = 4e-17
Identities = 78/263 (29%), Positives = 124/263 (47%), Gaps = 18/263 (6%)
Frame = +1
Query: 520 SAAKDCTIIKWSVESGRKLHVIPRAKK----GAEGQPPGHSSHILCMAISSDGKYLASGD 687
+A++D T+ W R+L +P+ + G E + GH + C + S+DG LA+G
Sbjct: 2010 AASEDFTVRLWP----RQLLTLPQKTEDFPCGIELR--GHEGPVSCCSFSTDGCSLATGG 2063
Query: 688 RSKLILIWEAQSCRH---LYTFTG-HRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENS 855
R + +L W+ ++ + + +F+ HRD V+G A+ + + L S S D SV +W+
Sbjct: 2064 RDRSLLCWDVRTLKAPVLICSFSACHRDWVTGCAWTK-DNLLVSCSSDGSVALWDPESRQ 2122
Query: 856 YVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDSI---- 1023
+ GHQ AV+A+ A+ V + GRDGT++VW H G I
Sbjct: 2123 KLGHFLGHQSAVSAVVAVEEH--VVSVGRDGTLKVWDHQGVEMTSIPAHSGPISHCAAAL 2180
Query: 1024 ------QLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAA 1185
Q +E +V+ DG+ LW PL L + H L G G V++ A
Sbjct: 2181 DPRAAGQPGSELLVVTVGLDGATRLW-----HPL-LVFQIHTLLGHSGP-----VNAAAV 2229
Query: 1186 LLNTDLIATGSHNNSVRLWQCGE 1254
+ L+ T S + S+RLWQ E
Sbjct: 2230 SETSGLLLTASEDGSIRLWQVPE 2252
Score = 48.9 bits (115), Expect = 7e-06
Identities = 55/236 (23%), Positives = 97/236 (41%), Gaps = 9/236 (3%)
Frame = +1
Query: 466 HQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILC 645
H+ +T T D+L + S + D ++ W ES +KL G GH S +
Sbjct: 2089 HRDWVTGCAWTKDNLLV-SCSSDGSVALWDPESRQKL-----------GHFLGHQSAV-- 2134
Query: 646 MAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAF--------RRGTHQL 801
A+ + +++ S R + +W+ Q + + H +S A + G+ L
Sbjct: 2135 SAVVAVEEHVVSVGRDGTLKVWDHQGVE-MTSIPAHSGPISHCAAALDPRAAGQPGSELL 2193
Query: 802 YST-SHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEE 978
T D + ++W+ + TL GH V A + DG++R+W++PEE
Sbjct: 2194 VVTVGLDGATRLWHPLLVFQIHTLLGHSGPVNAAAVSETSGLLLTASEDGSIRLWQVPEE 2253
Query: 979 SQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQ 1146
+ + + V+ A DGSVA+ G ++ L L +EA + Q
Sbjct: 2254 ADDTHIPRSSAAIT--------AVAWAPDGSVAVSG-NQAGELTLWQEAKAVATAQ 2300
>ref|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus scrofa].
Length = 513
Score = 85.5 bits (210), Expect = 6e-17
Identities = 61/272 (22%), Positives = 117/272 (43%), Gaps = 2/272 (0%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGR-KLHVIPRAKKGAEGQPPGH 627
R++ GH + C+ + P + + + D TI W + SG+ KL + GH
Sbjct: 197 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSL------------TGH 244
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
S + + +S+ YL S K + W+ + + + + GH AV GL L +
Sbjct: 245 ISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVT 304
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWK-IPEESQ 984
S D + ++W+V + V TL GH +AVA + + E + G D T+R+W + +++
Sbjct: 305 CSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTR 364
Query: 985 LVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPF 1164
+ H+ S+ ++ L + ++ ++ W + L G +
Sbjct: 365 VTLTNHKKSVRAVVLHPRHYTLASGSPDNIKQWKFPDGSFI------QNLSGHNAIINTL 418
Query: 1165 WVSSVAALLNTDLIATGSHNNSVRLWQCGEGF 1260
V+S L+ +G+ N ++ LW G+
Sbjct: 419 TVNSDGVLV------SGADNGTMHLWDWRTGY 444
Score = 55.8 bits (133), Expect = 5e-08
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +1
Query: 745 TGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECC 924
+GH V +A G + S DR++K+W++A +L GH V + +R
Sbjct: 200 SGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPY 259
Query: 925 VTAGGRDGTVRVWKIPEESQLV--FYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSK 1095
+ + G D V+ W + E ++++ ++GH ++ + L + +V+ + D + +W +
Sbjct: 260 LFSCGEDKQVKCWDL-EYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRT 318
Query: 1096 KRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDL 1275
K H L G V++V I TGSH+ ++RLW G ++ L
Sbjct: 319 K------ASVHTLSGHTNA-----VATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTL 367
Score = 55.5 bits (132), Expect = 7e-08
Identities = 35/172 (20%), Positives = 75/172 (43%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
IR GH ++ L + P + + ++D T W V + +H + GH
Sbjct: 280 IRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTL-----------SGH 328
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
++ + + + + +G I +W+ + + T T H+ +V + + L S
Sbjct: 329 TNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVLHPRHYTLAS 388
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVW 963
S D ++K W + S+++ L GH + L ++ + + +G +GT+ +W
Sbjct: 389 GSPD-NIKQWKFPDGSFIQNLSGHNAIINTL-TVNSDGVLVSGADNGTMHLW 438
>ref|XP_003353752.1| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 83.2 bits (204), Expect = 3e-16
Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 8/273 (2%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
+ + GH+L I+ + + D + SA+ D T+ W V SG+ L + GHS
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-----------KGHS 129
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYST 810
+++ C + + SG + + IW+ ++ + L T H D VS + F R + S+
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 811 SHDRSVKVWNVAENSYVETLFGHQDAVAALDALS-RECCVTAGGRDGTVRVWKIPEESQL 987
S+D ++W+ A ++TL + + S + A D T+++W + L
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249
Query: 988 VFY-GHQGS----IDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGL 1152
Y GH+ + + + +VSG++D V +W L K + L+G +
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV------QKLQGHTDV 303
Query: 1153 EQPFWVSSVAALLNTDLIATGSHNN--SVRLWQ 1245
V S A ++IA+ + N +++LW+
Sbjct: 304 -----VISTACHPTENIIASAALENDKTIKLWK 331
Score = 76.6 bits (187), Expect = 3e-14
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 2/214 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH+ + + S +G++LAS KLI IW A + T +GH+ +S +A+ ++ L
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S D+++K+W+V+ ++TL GH + V + + + +G D +VR+W +
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 982 QL-VFYGHQGSIDSIQLINEEHM-VSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLE 1155
L H + ++ + + VS + DG +W + + L + +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID----------D 212
Query: 1156 QPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
VS V N I + +N+++LW +G
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 3/207 (1%)
Frame = +1
Query: 736 YTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSR 915
+T GH AVS + F L S+S D+ +K+W + + +T+ GH+ ++ + S
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 916 ECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLINEEHM-VSGADDGSVALWGL 1089
+ + D T+++W + L GH + + ++ VSG+ D SV +W +
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 1090 SKKRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQL 1269
+ L AH P VS+V + LI + S++ R+W G
Sbjct: 159 KTGKCLK-TLPAH--------SDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 1270 DLL-CDIPLVGFINSLKFSSAGDFLVA 1347
L+ D P V F+ KFS G +++A
Sbjct: 208 TLIDDDNPPVSFV---KFSPNGKYILA 231
Score = 61.2 bits (147), Expect = 1e-09
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 8/220 (3%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
++ L+GH + C P I S + D ++ W V++G+ L + P H
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAH 170
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYT-FTGHRDAVSGLAFRRGTHQLY 804
S + + + DG + S L IW+ S + L T VS + F +
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQD---AVAALDALSRECCVTAGGRDGTVRVWKI-P 972
+ + D ++K+W+ ++ ++T GH++ + A +++ + +G D V +W +
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 973 EESQLVFYGHQGSIDSIQLINEEHMVSGA---DDGSVALW 1083
+E GH + S E++++ A +D ++ LW
Sbjct: 291 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 33,724,300
Number of extensions: 1030932
Number of successful extensions: 6517
Number of sequences better than 1.0e-05: 87
Number of HSP's gapped: 5876
Number of HSP's successfully gapped: 176
Length of query: 462
Length of database: 11,343,932
Length adjustment: 102
Effective length of query: 360
Effective length of database: 8,804,438
Effective search space: 3169597680
Effective search space used: 3169597680
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_663595.1| U3 small nucleolar RNA-interacting protein 2 [M... 687 0.0
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 105 1e-22
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 97 3e-20
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 97 3e-20
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 97 3e-20
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 91 3e-18
Alignment gi|NP_001032847.2| F-box/WD repeat-containing protein 1A isofor... 90 4e-18
Alignment gi|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b... 90 4e-18
Alignment gi|NP_001074910.1| WD repeat domain 86 [Mus musculus]. 87 3e-17
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 83 4e-16
>ref|NP_663595.1| U3 small nucleolar RNA-interacting protein 2 [Mus musculus].
Length = 475
Score = 687 bits (1774), Expect = 0.0
Identities = 342/393 (87%), Positives = 350/393 (89%)
Frame = +1
Query: 208 APRKTXXXXXXXXXXTAQEKKLRLXXXXXXXXXXXXXXXXXXXXXXXDQVAGKLKEDVLE 387
APRKT TAQEKKLRL DQVAG+LKEDVLE
Sbjct: 59 APRKTEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLE 118
Query: 388 QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG 567
QRGRLQKSVAKEIQAPAP DIR+LRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVE+G
Sbjct: 119 QRGRLQKSVAKEIQAPAPTDIRVLRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVETG 178
Query: 568 RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT 747
RKLHVIPRAKKGA+GQP GHSSH+LCMAISSDGKYLASGDRSKLILIWEAQSC+HLYTFT
Sbjct: 179 RKLHVIPRAKKGAQGQPAGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFT 238
Query: 748 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 927
GHRDAVSGLAFR+GTHQLYSTSHDRSVKVWN AENSYVETLFGHQDAVAALDALSRECCV
Sbjct: 239 GHRDAVSGLAFRKGTHQLYSTSHDRSVKVWNAAENSYVETLFGHQDAVAALDALSRECCV 298
Query: 928 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 1107
TAGGRDGTVRVWKIPEESQLVFYGHQGSID I LINEEHMVSGADDGSVALWGLSKKRPL
Sbjct: 299 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPL 358
Query: 1108 ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI 1287
ALQREAHGL GE GLEQPFWVSSVAALLNTDL+ATGSHN VRLWQCGEGFRQLD LCDI
Sbjct: 359 ALQREAHGLHGEPGLEQPFWVSSVAALLNTDLVATGSHNARVRLWQCGEGFRQLDPLCDI 418
Query: 1288 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 1386
PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR
Sbjct: 419 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 451
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 105 bits (261), Expect = 1e-22
Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 9/318 (2%)
Frame = +1
Query: 424 IQAP---APADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRA 594
I+AP A +R H + C +PD + +A+ D + W +SGR L +
Sbjct: 8 IRAPTRLAVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLA-- 65
Query: 595 KKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGL 774
GH + S DG+ +AS I +W+ + L+ GH+ +V +
Sbjct: 66 ---------GHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETV 116
Query: 775 AFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTV 954
+F + QL S D+ VW V V L GH D++ + D + G D TV
Sbjct: 117 SFSPDSKQLASGGWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTV 176
Query: 955 RVWKIPEESQLVFY----GHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQRE 1122
+W + + +V Y GH G+I + + SG+ D ++ +W + L LQ +
Sbjct: 177 HIWDLRASTPVVSYHNLEGHTGNISCLCYSASGLLASGSWDKTICVWKPTTNN-LPLQLK 235
Query: 1123 AHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQC--GEGFRQLDLLCDIPLV 1296
H + WV+S+A + +A+ ++ +V++W C G+ L + D+
Sbjct: 236 GHTI----------WVNSLAFSPDELKLASAGYSRTVKVWDCLTGKCLETLKGMLDV--- 282
Query: 1297 GFINSLKFSSAGDFLVAG 1350
++ F+ G LV+G
Sbjct: 283 --AHACIFTPDGKLLVSG 298
Score = 83.6 bits (205), Expect = 3e-16
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 2/254 (0%)
Frame = +1
Query: 625 HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLY 804
H + C A S DG+ L + + +W +S R L+ GHR V F +
Sbjct: 25 HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIA 84
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQ 984
S+S D S+++W+VA + + L GHQ +V + + +GG D VW++ +
Sbjct: 85 SSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRR 144
Query: 985 L-VFYGHQGSIDSIQLI-NEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
+ + GH SI S + + +G+ D +V +W L P+ H L G G
Sbjct: 145 VHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVV---SYHNLEGHTGNIS 201
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSAGDF 1338
S+ + L+A+GS + ++ +W+ L L ++NSL F S +
Sbjct: 202 CLCYSA------SGLLASGSWDKTICVWKPTTNNLPLQLKGH---TIWVNSLAF-SPDEL 251
Query: 1339 LVAGVGQEHRLGRW 1380
+A G + W
Sbjct: 252 KLASAGYSRTVKVW 265
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 97.1 bits (240), Expect = 3e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 376 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 422
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 423 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 478
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 479 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 536
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 537 QTLQGPSKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 573
Score = 80.1 bits (196), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 353 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 399
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 400 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 457
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 458 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 512
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 513 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPSKHQSAVTCLQFNKNFVI 560
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 561 TSSDDGTVKLWDLKTGEFIRNL 582
Score = 76.3 bits (186), Expect = 5e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 300 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 356
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 357 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 414
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 415 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 467
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 468 SLQFDGIH-------VVSGSLDTSIRVWDVETG 493
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 97.1 bits (240), Expect = 3e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 457 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 503
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 504 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 559
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 560 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 617
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 618 QTLQGPSKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 654
Score = 80.1 bits (196), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 434 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 480
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 481 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 538
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 539 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 593
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 594 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPSKHQSAVTCLQFNKNFVI 641
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 642 TSSDDGTVKLWDLKTGEFIRNL 663
Score = 76.3 bits (186), Expect = 5e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 381 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 437
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 438 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 495
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 496 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 548
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 549 SLQFDGIH-------VVSGSLDTSIRVWDVETG 574
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 97.1 bits (240), Expect = 3e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 457 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 503
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 504 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 559
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 560 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 617
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 618 QTLQGPSKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 654
Score = 80.1 bits (196), Expect = 4e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 434 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 480
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 481 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 538
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 539 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 593
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 594 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPSKHQSAVTCLQFNKNFVI 641
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 642 TSSDDGTVKLWDLKTGEFIRNL 663
Score = 76.3 bits (186), Expect = 5e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 381 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 437
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 438 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 495
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 496 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 548
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 549 SLQFDGIH-------VVSGSLDTSIRVWDVETG 574
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 90.5 bits (223), Expect = 3e-18
Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 3/278 (1%)
Frame = +1
Query: 418 KEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAK 597
+E Q P A L GH +I+ + +P+ + S+A D II W G K
Sbjct: 22 EEPQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGN-------CK 74
Query: 598 KGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLA 777
K G HS I +A SSD L S K + +W+ +S + L T GH D V
Sbjct: 75 KTLYG----HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCD 130
Query: 778 FRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVR 957
F ++ + S S D SVK+W V ++TL H D ++A++ + +G DG R
Sbjct: 131 FNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCR 190
Query: 958 VWKIPEESQLVFYGHQGS--IDSIQLI-NEEHMVSGADDGSVALWGLSKKRPLALQREAH 1128
+W L +G+ + ++ N +++++ D ++ LW S+ R L +
Sbjct: 191 IWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL---KTYT 247
Query: 1129 GLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLW 1242
G + E+ + + + ++ + +GS +N V +W
Sbjct: 248 GHKNEK-----YCLFASFSVTGRKWVVSGSEDNMVYIW 280
Score = 65.5 bits (158), Expect = 1e-10
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 2/243 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GHS+ I + S +G++LAS LI+IW A T GH +S +A+ + +L
Sbjct: 37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRL 96
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S D+++KVW++ ++TL GH D V CC S
Sbjct: 97 VSASDDKTLKVWDMRSGKCLKTLKGHSDFVF--------CC-------------DFNPPS 135
Query: 982 QLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQP 1161
L+ VSG+ D SV +W + + L AH P
Sbjct: 136 NLI-------------------VSGSFDESVKIWEVKTGKCLKTL-SAHS--------DP 167
Query: 1162 FWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCD--IPLVGFINSLKFSSAGD 1335
+S+V N LI +GS++ R+W G + L L D P V F+ KFS G
Sbjct: 168 --ISAVNFNCNGSLIVSGSYDGLCRIWDAASG-QCLRTLADEGNPPVSFV---KFSPNGK 221
Query: 1336 FLV 1344
+++
Sbjct: 222 YIL 224
Score = 56.2 bits (134), Expect = 6e-08
Identities = 46/177 (25%), Positives = 71/177 (40%), Gaps = 5/177 (2%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
++ L H I+ + + I S + D W SG+ L + EG PP
Sbjct: 158 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTL-----ADEGNPP-- 210
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFR---RGTHQ 798
+ + S +GKY+ + + +W+ R L T+TGH++ L G
Sbjct: 211 ---VSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKW 267
Query: 799 LYSTSHDRSVKVWNVAENSYVETLFGHQDAV--AALDALSRECCVTAGGRDGTVRVW 963
+ S S D V +WN+ V+ L GH D V AA A D T++VW
Sbjct: 268 VVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALENDKTIKVW 324
>ref|NP_001032847.2| F-box/WD repeat-containing protein 1A isoform a [Mus musculus].
Length = 605
Score = 90.1 bits (222), Expect = 4e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 337 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNAGEMLNTLIH-----------HC 383
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 384 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 439
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 440 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 497
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 498 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 533
Score = 63.5 bits (153), Expect = 4e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 312 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 369
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 370 VNAGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 427
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 428 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 472
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 473 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 503
>ref|NP_033901.1| F-box/WD repeat-containing protein 1A isoform b [Mus musculus].
Length = 569
Score = 90.1 bits (222), Expect = 4e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 301 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNAGEMLNTLIH-----------HC 347
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 348 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 403
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 404 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 461
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 462 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 497
Score = 63.5 bits (153), Expect = 4e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 276 DDQKIVSGLRDNTIKIWDKSTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 333
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 334 VNAGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 391
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 392 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 436
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 437 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 467
>ref|NP_001074910.1| WD repeat domain 86 [Mus musculus].
Length = 380
Score = 87.0 bits (214), Expect = 3e-17
Identities = 82/287 (28%), Positives = 122/287 (42%), Gaps = 16/287 (5%)
Frame = +1
Query: 454 ILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSS 633
+L+GH+ +T + +D A F+ + DCTI +W V +G+ L V GH+S
Sbjct: 52 LLQGHESYVTFCHL--EDEAAFTCSADCTIRRWDVRTGQCLQVY-----------RGHTS 98
Query: 634 HILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAF----------- 780
+ + +++D + +S DR+ +W + F GHR+ V LA+
Sbjct: 99 IVNRILVANDQLFSSSYDRT--ARVWTVDKGQVSQEFRGHRNCVLTLAYSAPEDLPQDPC 156
Query: 781 ---RRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGT 951
G L + S D + KVW VA +TL GH AV L G D T
Sbjct: 157 MEAAMGGGLLVTGSSDDTAKVWQVASGCCHQTLRGHTGAVLCLVLHVSSHTAFTGSTDAT 216
Query: 952 VRVWKIPEESQL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAH 1128
VR W I QL VF HQGS+ ++L + + SG+ D +V W
Sbjct: 217 VRAWDILSGEQLRVFREHQGSVICLEL-TDRLLYSGSADRTVKCWLAD------------ 263
Query: 1129 GLRGEQGLEQPFWVSSVAAL-LNTDLIATGSHNNSVRLWQCGEGFRQ 1266
GE+ L P SV+AL + + TGS + R + G Q
Sbjct: 264 --TGERVLTFPAHRHSVSALKYHAGTLFTGSGDACARAFDAQSGVLQ 308
Score = 79.7 bits (195), Expect = 5e-15
Identities = 69/291 (23%), Positives = 123/291 (42%), Gaps = 17/291 (5%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
+R+ H+ I L ++PD + + ++D T WS G+ ++ GH
Sbjct: 8 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTVDGQCCALL-----------QGH 56
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
S++ + + + S D + I W+ ++ + L + GH V+ + QL+S
Sbjct: 57 ESYVTFCHLEDEAAFTCSADCT--IRRWDVRTGQCLQVYRGHTSIVNRILV--ANDQLFS 112
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAAL-----DALSRECCVTA---------GGRD 945
+S+DR+ +VW V + + GH++ V L + L ++ C+ A G D
Sbjct: 113 SSYDRTARVWTVDKGQVSQEFRGHRNCVLTLAYSAPEDLPQDPCMEAAMGGGLLVTGSSD 172
Query: 946 GTVRVWKIPEE-SQLVFYGHQGSIDSIQLINEEHMV-SGADDGSVALWGLSKKRPLALQR 1119
T +VW++ GH G++ + L H +G+ D +V W + L + R
Sbjct: 173 DTAKVWQVASGCCHQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFR 232
Query: 1120 EAHGLRGEQGLEQPFWVSSVAALLNTD-LIATGSHNNSVRLWQCGEGFRQL 1269
E G SV L TD L+ +GS + +V+ W G R L
Sbjct: 233 EHQG--------------SVICLELTDRLLYSGSADRTVKCWLADTGERVL 269
Score = 68.2 bits (165), Expect = 1e-11
Identities = 64/275 (23%), Positives = 114/275 (41%), Gaps = 10/275 (3%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLH--------VIPRAKKG 603
+++ RGH + +++ D L FS++ D T W+V+ G+ V+ A
Sbjct: 90 LQVYRGHTSIVNRILVANDQL--FSSSYDRTARVWTVDKGQVSQEFRGHRNCVLTLAYSA 147
Query: 604 AEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWE-AQSCRHLYTFTGHRDAVSGLAF 780
E P CM + G L +G +W+ A C H T GH AV L
Sbjct: 148 PEDLPQDP-----CMEAAMGGGLLVTGSSDDTAKVWQVASGCCH-QTLRGHTGAVLCLVL 201
Query: 781 RRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRV 960
+H ++ S D +V+ W++ + HQ +V L+ R + +G D TV+
Sbjct: 202 HVSSHTAFTGSTDATVRAWDILSGEQLRVFREHQGSVICLELTDR--LLYSGSADRTVKC 259
Query: 961 WKIPE-ESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLR 1137
W E L F H+ S+ +++ + + +G+ D + LQR G
Sbjct: 260 WLADTGERVLTFPAHRHSVSALK-YHAGTLFTGSGDACARAFDAQSG---VLQRVFRG-- 313
Query: 1138 GEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLW 1242
F ++ + ++ ++ T SH+ ++RLW
Sbjct: 314 ------HTFVINCLQ--VHGQVLYTASHDGALRLW 340
Score = 67.0 bits (162), Expect = 3e-11
Identities = 44/185 (23%), Positives = 77/185 (41%)
Frame = +1
Query: 415 AKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRA 594
AK Q + + LRGH ++ CLV+ F+ + D T+ W + SG +L V
Sbjct: 175 AKVWQVASGCCHQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFRE- 233
Query: 595 KKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGL 774
H ++C+ ++ + L SG + + W A + + TF HR +VS L
Sbjct: 234 ----------HQGSVICLELTD--RLLYSGSADRTVKCWLADTGERVLTFPAHRHSVSAL 281
Query: 775 AFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTV 954
+ GT L++ S D + ++ GH + L + + DG +
Sbjct: 282 KYHAGT--LFTGSGDACARAFDAQSGVLQRVFRGHTFVINCLQVHGQ--VLYTASHDGAL 337
Query: 955 RVWKI 969
R+W +
Sbjct: 338 RLWDV 342
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 83.2 bits (204), Expect = 4e-16
Identities = 64/273 (23%), Positives = 121/273 (44%), Gaps = 8/273 (2%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
+ + GH+L I+ + + D + SA+ D T+ W V SG+ L + GHS
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL-----------KGHS 129
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYST 810
+++ C + + SG + + IW+ ++ + L T H D VS + F R + S+
Sbjct: 130 NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS 189
Query: 811 SHDRSVKVWNVAENSYVETLFGHQDAVAALDALS-RECCVTAGGRDGTVRVWKIPEESQL 987
S+D ++W+ A ++TL + + S + A D T+++W + L
Sbjct: 190 SYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL 249
Query: 988 VFY-GHQGS----IDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGL 1152
Y GH+ + + + +VSG++D V +W L K + L+G +
Sbjct: 250 KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV------QKLQGHTDV 303
Query: 1153 EQPFWVSSVAALLNTDLIATGSHNN--SVRLWQ 1245
V S A ++IA+ + N +++LW+
Sbjct: 304 -----VISTACHPTENIIASAALENDKTIKLWK 331
Score = 76.6 bits (187), Expect = 4e-14
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 2/214 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH+ + + S +G++LAS KLI IW A + T +GH+ +S +A+ ++ L
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S D+++K+W+V+ ++TL GH + V + + + +G D +VR+W +
Sbjct: 103 VSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK 162
Query: 982 QL-VFYGHQGSIDSIQLINEEHM-VSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLE 1155
L H + ++ + + VS + DG +W + + L + +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID----------D 212
Query: 1156 QPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
VS V N I + +N+++LW +G
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG 246
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/207 (25%), Positives = 92/207 (44%), Gaps = 3/207 (1%)
Frame = +1
Query: 736 YTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSR 915
+T GH AVS + F L S+S D+ +K+W + + +T+ GH+ ++ + S
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD 98
Query: 916 ECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLINEEHM-VSGADDGSVALWGL 1089
+ + D T+++W + L GH + + ++ VSG+ D SV +W +
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Query: 1090 SKKRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQL 1269
+ L AH P VS+V + LI + S++ R+W G
Sbjct: 159 KTGKCLK-TLPAH--------SDP--VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 1270 DLL-CDIPLVGFINSLKFSSAGDFLVA 1347
L+ D P V F+ KFS G +++A
Sbjct: 208 TLIDDDNPPVSFV---KFSPNGKYILA 231
Score = 61.2 bits (147), Expect = 2e-09
Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 8/220 (3%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
++ L+GH + C P I S + D ++ W V++G+ L + P H
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL-----------PAH 170
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYT-FTGHRDAVSGLAFRRGTHQLY 804
S + + + DG + S L IW+ S + L T VS + F +
Sbjct: 171 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYIL 230
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQD---AVAALDALSRECCVTAGGRDGTVRVWKI-P 972
+ + D ++K+W+ ++ ++T GH++ + A +++ + +G D V +W +
Sbjct: 231 AATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQT 290
Query: 973 EESQLVFYGHQGSIDSIQLINEEHMVSGA---DDGSVALW 1083
+E GH + S E++++ A +D ++ LW
Sbjct: 291 KEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 44,904,943
Number of extensions: 1324424
Number of successful extensions: 8055
Number of sequences better than 1.0e-05: 106
Number of HSP's gapped: 7157
Number of HSP's successfully gapped: 238
Length of query: 462
Length of database: 15,617,559
Length adjustment: 105
Effective length of query: 357
Effective length of database: 12,463,779
Effective search space: 4449569103
Effective search space used: 4449569103
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004695.1| U3 small nucleolar RNA-interacting protein 2 [H... 686 0.0
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 97 4e-20
Alignment gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ... 97 4e-20
Alignment gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ... 97 4e-20
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 94 2e-19
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 94 4e-19
Alignment gi|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2... 90 4e-18
Alignment gi|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1... 90 4e-18
Alignment gi|NP_009041.2| telomerase protein component 1 [Homo sapiens]. 86 1e-16
Alignment gi|NP_001188493.1| pleiotropic regulator 1 isoform 2 [Homo sapi... 85 2e-16
>ref|NP_004695.1| U3 small nucleolar RNA-interacting protein 2 [Homo sapiens].
Length = 475
Score = 686 bits (1770), Expect = 0.0
Identities = 340/393 (86%), Positives = 352/393 (89%)
Frame = +1
Query: 208 APRKTXXXXXXXXXXTAQEKKLRLXXXXXXXXXXXXXXXXXXXXXXXDQVAGKLKEDVLE 387
APRK TAQEKKLRL DQVAG+LKEDVLE
Sbjct: 59 APRKPEEEEEEELEETAQEKKLRLAKLYLEQLRQQEEEKAEARAFEEDQVAGRLKEDVLE 118
Query: 388 QRGRLQKSVAKEIQAPAPADIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESG 567
QRGRLQK VAKEIQAPA ADIR+LRGHQLSITCLV+TPDD AIFSAAKDC+IIKWSVESG
Sbjct: 119 QRGRLQKLVAKEIQAPASADIRVLRGHQLSITCLVVTPDDSAIFSAAKDCSIIKWSVESG 178
Query: 568 RKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFT 747
RKLHVIPRAKKGAEG+PPGHSSH+LCMAISSDGKYLASGDRSKLILIWEAQSC+HLYTFT
Sbjct: 179 RKLHVIPRAKKGAEGKPPGHSSHVLCMAISSDGKYLASGDRSKLILIWEAQSCQHLYTFT 238
Query: 748 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 927
GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV
Sbjct: 239 GHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCV 298
Query: 928 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPL 1107
TAGGRDGTVRVWKIPEESQLVFYGHQGSID I LINEEHMVSGADDGSVALWGLSKKRPL
Sbjct: 299 TAGGRDGTVRVWKIPEESQLVFYGHQGSIDCIHLINEEHMVSGADDGSVALWGLSKKRPL 358
Query: 1108 ALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDI 1287
ALQREAHGLRGE GLEQPFW+SSVAALLNTDL+ATGSH++ VRLWQCGEGFRQLDLLCDI
Sbjct: 359 ALQREAHGLRGEPGLEQPFWISSVAALLNTDLVATGSHSSCVRLWQCGEGFRQLDLLCDI 418
Query: 1288 PLVGFINSLKFSSAGDFLVAGVGQEHRLGRWWR 1386
PLVGFINSLKFSS+GDFLVAGVGQEHRLGRWWR
Sbjct: 419 PLVGFINSLKFSSSGDFLVAGVGQEHRLGRWWR 451
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 336 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 382
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 383 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 438
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 439 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 496
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 497 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 533
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 313 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 359
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 360 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 417
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 418 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 472
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 473 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 520
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 521 TSSDDGTVKLWDLKTGEFIRNL 542
Score = 76.3 bits (186), Expect = 6e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 260 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 316
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 317 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 374
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 375 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 427
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 428 SLQFDGIH-------VVSGSLDTSIRVWDVETG 453
>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
Length = 707
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 454 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 500
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 501 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 556
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 557 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 614
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 615 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 651
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 431 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 477
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 478 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 535
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 536 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 590
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 591 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 638
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 639 TSSDDGTVKLWDLKTGEFIRNL 660
Score = 76.3 bits (186), Expect = 6e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 378 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 434
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 435 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 492
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 493 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 545
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 546 SLQFDGIH-------VVSGSLDTSIRVWDVETG 571
>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
Length = 627
Score = 97.1 bits (240), Expect = 4e-20
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 4/218 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
I L GH ++ C+ + + + S ++D T+ W +E+G+ LHV+ GH
Sbjct: 374 IHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVL-----------MGH 420
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + C + DG+ + SG ++ +W+ ++ L+T GH + V L F G H + S
Sbjct: 421 VAAVRC--VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-DGIH-VVS 476
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D S++VW+V + + TL GHQ + ++ ++ + +G D TV++W I L
Sbjct: 477 GSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL 534
Query: 988 -VFYG---HQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
G HQ ++ +Q N+ +++ +DDG+V LW L
Sbjct: 535 QTLQGPNKHQSAVTCLQ-FNKNFVITSSDDGTVKLWDL 571
Score = 79.7 bits (195), Expect = 6e-15
Identities = 70/262 (26%), Positives = 120/262 (45%), Gaps = 7/262 (2%)
Frame = +1
Query: 505 DLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASG 684
D I S + D T+ W+ E+G +H + GH+S + CM + K + SG
Sbjct: 351 DNIIISGSTDRTLKVWNAETGECIHTL-----------YGHTSTVRCMHLHE--KRVVSG 397
Query: 685 DRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE 864
R + +W+ ++ + L+ GH AV + + ++ S ++D VKVW+ + +
Sbjct: 398 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 455
Query: 865 TLFGHQDAVAAL--DALSRECCVTAGGRDGTVRVWKIPEESQL-VFYGHQGSIDSIQLIN 1035
TL GH + V +L D + V +G D ++RVW + + + GHQ S+ S +
Sbjct: 456 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELK 510
Query: 1036 EEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALL--NTDLIA 1209
+ +VSG D +V +W + + L Q L+ P S L N + +
Sbjct: 511 DNILVSGNADSTVKIWDIKTGQCL------------QTLQGPNKHQSAVTCLQFNKNFVI 558
Query: 1210 TGSHNNSVRLW--QCGEGFRQL 1269
T S + +V+LW + GE R L
Sbjct: 559 TSSDDGTVKLWDLKTGEFIRNL 580
Score = 76.3 bits (186), Expect = 6e-14
Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 1/213 (0%)
Frame = +1
Query: 622 GHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
GH H++ + G + SG + +W A + + L T GH V R +
Sbjct: 298 GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--I 354
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + TL+GH V + E V +G RD T+RVW I
Sbjct: 355 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQ 412
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQ 1158
L V GH ++ +Q + +VSGA D V +W + L H L+G
Sbjct: 413 CLHVLMGHVAAVRCVQ-YDGRRVVSGAYDFMVKVWDPETETCL------HTLQGHTNRVY 465
Query: 1159 PFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+ + +GS + S+R+W G
Sbjct: 466 SLQFDGIH-------VVSGSLDTSIRVWDVETG 491
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 94.4 bits (233), Expect = 2e-19
Identities = 68/311 (21%), Positives = 128/311 (41%), Gaps = 4/311 (1%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
++ H + +PD + + ++D + W SG+ L + GH
Sbjct: 14 VKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLG-----------GH 62
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + S DG AS + +W+ + L GH+ +V ++F + QL S
Sbjct: 63 TGPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLAS 122
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKI----PE 975
D+ V +W+V + L GH+D++ + D C+ G D TV +W + P
Sbjct: 123 GGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPA 182
Query: 976 ESQLVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLE 1155
S GH +I + + SG+ D ++ +W + L +Q + H
Sbjct: 183 VSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTS-SLLIQLKGH--------- 232
Query: 1156 QPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSAGD 1335
WV S+A + +A+ ++ V++W C G + L+ L + + ++ F+ G
Sbjct: 233 -VTWVKSIAFSPDELWLASAGYSRMVKVWDCNTG-KCLETLKGV--LDVAHTCAFTPDGK 288
Query: 1336 FLVAGVGQEHR 1368
LV+G + R
Sbjct: 289 ILVSGAADQTR 299
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 93.6 bits (231), Expect = 4e-19
Identities = 59/266 (22%), Positives = 116/266 (43%), Gaps = 4/266 (1%)
Frame = +1
Query: 460 RGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHI 639
RGH I CL P + + + D T W +++G +++ + GHS+ I
Sbjct: 174 RGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLR-----------GHSAEI 222
Query: 640 LCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHD 819
+ ++ ++ G + +G +++W+A + R + GH +S +F + + S D
Sbjct: 223 ISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMD 282
Query: 820 RSVKVWNVAENSYVETLFGHQDAV--AALDALSRECCVTAGGRDGTVRVWKIPEESQLV- 990
++ K+W+ V TL GH D + + D + + DGT R++ +
Sbjct: 283 KTCKLWDATNGKCVATLTGHDDEILDSCFDYTGK--LIATASADGTARIFSAATRKCIAK 340
Query: 991 FYGHQGSIDSIQLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFW 1167
GH+G I I + H+++G+ D + +W + L + L G
Sbjct: 341 LEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQCLQV------LEGHTD-----E 389
Query: 1168 VSSVAALLNTDLIATGSHNNSVRLWQ 1245
+ S A +++ TGS +N+ R+W+
Sbjct: 390 IFSCAFNYKGNIVITGSKDNTCRIWR 415
Score = 72.0 bits (175), Expect = 1e-12
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 2/215 (0%)
Frame = +1
Query: 445 DIRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPG 624
++ LRGH I L I + + D T++ W ++GRK++++ G
Sbjct: 211 EVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNIL-----------IG 259
Query: 625 HSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLY 804
H + I + + D + +G K +W+A + + + T TGH D + F +
Sbjct: 260 HCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIA 319
Query: 805 STSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQ 984
+ S D + ++++ A + L GH+ ++ + + + G D T R+W
Sbjct: 320 TASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWDAQTGQC 379
Query: 985 L-VFYGHQGSIDSIQLINEEHMV-SGADDGSVALW 1083
L V GH I S + ++V +G+ D + +W
Sbjct: 380 LQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 70.5 bits (171), Expect = 4e-12
Identities = 52/215 (24%), Positives = 89/215 (41%), Gaps = 6/215 (2%)
Frame = +1
Query: 631 SHILCM---AISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQL 801
+HIL + A++ G +G + +W+ S L T GHR+ V +AF
Sbjct: 90 AHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDK 149
Query: 802 YST-SHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPE- 975
+T S D++ K+W+V T GH + L + V G D T ++W I
Sbjct: 150 IATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNG 209
Query: 976 ESQLVFYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGL 1152
E GH I S+ + + +++G+ D +V +W R + + +
Sbjct: 210 EEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNIL-----------I 258
Query: 1153 EQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEG 1257
+SS + + LI TGS + + +LW G
Sbjct: 259 GHCAEISSASFNWDCSLILTGSMDKTCKLWDATNG 293
Score = 67.0 bits (162), Expect = 4e-11
Identities = 49/223 (21%), Positives = 97/223 (43%), Gaps = 3/223 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
++L+ H L +T + + + + D T W SG +L+ + GH
Sbjct: 86 KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLE-----------GHR 134
Query: 631 SHILCMAISSD-GKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
+ + +A ++ G +A+G K +W ++ + +TF GH + L+F + + +
Sbjct: 135 NVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVAT 194
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL 987
S D + K+W++ V TL GH + +L + + G D TV VW ++
Sbjct: 195 GSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKV 254
Query: 988 -VFYGHQGSIDSIQLINEEHMV-SGADDGSVALWGLSKKRPLA 1110
+ GH I S + ++ +G+ D + LW + + +A
Sbjct: 255 NILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA 297
>ref|NP_003930.1| F-box/WD repeat-containing protein 1A isoform 2 [Homo sapiens].
Length = 569
Score = 90.1 bits (222), Expect = 4e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 301 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 347
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 348 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 403
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 404 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 461
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 462 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 497
Score = 63.5 bits (153), Expect = 4e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 276 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 333
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 334 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 391
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 392 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 436
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 437 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 467
>ref|NP_378663.1| F-box/WD repeat-containing protein 1A isoform 1 [Homo sapiens].
Length = 605
Score = 90.1 bits (222), Expect = 4e-18
Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 4/217 (1%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHS 630
RIL GH S+ CL D+ I + + D T+ W V +G L+ + H
Sbjct: 337 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH-----------HC 383
Query: 631 SHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLY---TFTGHRDAVSGLAFRRGTHQL 801
+L + ++ S DRS I +W+ S + GHR AV+ + F +
Sbjct: 384 EAVLHLRFNNGMMVTCSKDRS--IAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYI 439
Query: 802 YSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEES 981
S S DR++KVWN + +V TL GH+ +A L R+ V +G D T+R+W I +
Sbjct: 440 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGSSDNTIRLWDIECGA 497
Query: 982 QL-VFYGHQGSIDSIQLINEEHMVSGADDGSVALWGL 1089
L V GH+ + I+ N + +VSGA DG + +W L
Sbjct: 498 CLRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDL 533
Score = 63.5 bits (153), Expect = 4e-10
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 7/211 (3%)
Frame = +1
Query: 661 DGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWN 840
D + + SG R I IW+ + TGH +V L + + + S D +V+VW+
Sbjct: 312 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWD 369
Query: 841 VAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQL----VFYGHQG 1008
V + TL H +AV L + VT +D ++ VW + + + V GH+
Sbjct: 370 VNTGEMLNTLIHHCEAVLHL-RFNNGMMVTC-SKDRSIAVWDMASPTDITLRRVLVGHRA 427
Query: 1009 SIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAAL 1188
+++ + +++++VS + D ++ +W S R +G + +A L
Sbjct: 428 AVNVVD-FDDKYIVSASGDRTIKVWNTS---TCEFVRTLNGHK-----------RGIACL 472
Query: 1189 LNTD-LIATGSHNNSVRLW--QCGEGFRQLD 1272
D L+ +GS +N++RLW +CG R L+
Sbjct: 473 QYRDRLVVSGSSDNTIRLWDIECGACLRVLE 503
>ref|NP_009041.2| telomerase protein component 1 [Homo sapiens].
Length = 2627
Score = 85.5 bits (210), Expect = 1e-16
Identities = 80/291 (27%), Positives = 128/291 (43%), Gaps = 14/291 (4%)
Frame = +1
Query: 520 SAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSHILCMAISSDGKYLASGDRSKL 699
SA++D T+ W + + H G E + GH + C + S+DG LA+G R +
Sbjct: 2027 SASEDFTVQLWPRQLLTRPHKAEDFPCGTELR--GHEGPVSCCSFSTDGGSLATGGRDRS 2084
Query: 700 ILIWEAQSCRH---LYTFTG-HRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVET 867
+L W+ ++ + +++F HRD V+G A+ + + L S S D SV +W+ +
Sbjct: 2085 LLCWDVRTPKTPVLIHSFPACHRDWVTGCAWTK-DNLLISCSSDGSVGLWDPESGQRLGQ 2143
Query: 868 LFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFYGHQGSIDSIQLINEEH- 1044
GHQ AV+A+ A+ V + RDGT++VW H G I E
Sbjct: 2144 FLGHQSAVSAVAAVEEH--VVSVSRDGTLKVWDHQGVELTSIPAHSGPISHCAAAMEPRA 2201
Query: 1045 ---------MVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPFWVSSVAALLNT 1197
+V+ DG+ LW PL L + H L G G V + A +
Sbjct: 2202 AGQPGSELLVVTVGLDGATRLW-----HPL-LVCQTHTLLGHSGP-----VRAAAVSETS 2250
Query: 1198 DLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLKFSSAGDFLVAG 1350
L+ T S + SVRLWQ ++ D C + ++ ++ G V+G
Sbjct: 2251 GLMLTASEDGSVRLWQVP---KEADDTCIPRSSAAVTAVAWAPDGSMAVSG 2298
Score = 63.9 bits (154), Expect = 3e-10
Identities = 71/321 (22%), Positives = 132/321 (41%), Gaps = 13/321 (4%)
Frame = +1
Query: 457 LRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGHSSH 636
LRGH+ ++C + D ++ + +D +++ W V + P+ P H
Sbjct: 2057 LRGHEGPVSCCSFSTDGGSLATGGRDRSLLCWDVRT-------PKTPVLIHSFPACHRDW 2109
Query: 637 ILCMAISSDGKYLA-SGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYSTS 813
+ A + D ++ S D S + +W+ +S + L F GH+ AVS +A + S S
Sbjct: 2110 VTGCAWTKDNLLISCSSDGS--VGLWDPESGQRLGQFLGHQSAVSAVA--AVEEHVVSVS 2165
Query: 814 HDRSVKVWNVAENSYVETLFGHQDAVA---------ALDALSRECCVTAGGRDGTVRVWK 966
D ++KVW+ + + ++ H ++ A E V G DG R+W
Sbjct: 2166 RDGTLKVWD-HQGVELTSIPAHSGPISHCAAAMEPRAAGQPGSELLVVTVGLDGATRLWH 2224
Query: 967 IPEESQL-VFYGHQGSIDSIQLINEEH-MVSGADDGSVALWGLSKKR-PLALQREAHGLR 1137
Q GH G + + + M++ ++DGSV LW + K+ + R +
Sbjct: 2225 PLLVCQTHTLLGHSGPVRAAAVSETSGLMLTASEDGSVRLWQVPKEADDTCIPRSSAA-- 2282
Query: 1138 GEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDLLCDIPLVGFINSLK 1317
V++VA + + +G+ + LWQ + + G I +L
Sbjct: 2283 ----------VTAVAWAPDGSMAVSGNQAGELILWQ------EAKAVATAQAPGHIGALI 2326
Query: 1318 FSSAGDFLVAGVGQEHRLGRW 1380
+SSA F V + + ++ W
Sbjct: 2327 WSSAHTFFV--LSADEKISEW 2345
>ref|NP_001188493.1| pleiotropic regulator 1 isoform 2 [Homo sapiens].
Length = 505
Score = 84.7 bits (208), Expect = 2e-16
Identities = 61/272 (22%), Positives = 116/272 (42%), Gaps = 2/272 (0%)
Frame = +1
Query: 451 RILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGR-KLHVIPRAKKGAEGQPPGH 627
R++ GH + C+ + P + + + D TI W + SG+ KL + GH
Sbjct: 189 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSL------------TGH 236
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
S + + +S+ YL S K + W+ + + + + GH AV GL L +
Sbjct: 237 ISTVRGVIVSTRSPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVT 296
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVWK-IPEESQ 984
S D + ++W+V + V TL GH +AVA + + E + G D T+R+W + +++
Sbjct: 297 CSRDSTARIWDVRTKASVHTLSGHTNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTR 356
Query: 985 LVFYGHQGSIDSIQLINEEHMVSGADDGSVALWGLSKKRPLALQREAHGLRGEQGLEQPF 1164
+ H+ S+ ++ L + + ++ W + L G +
Sbjct: 357 VTLTNHKKSVRAVVLHPRHYTFASGSPDNIKQWKFPDGSFI------QNLSGHNAIINTL 410
Query: 1165 WVSSVAALLNTDLIATGSHNNSVRLWQCGEGF 1260
V+S L+ +G+ N ++ LW G+
Sbjct: 411 TVNSDGVLV------SGADNGTMHLWDWRTGY 436
Score = 55.8 bits (133), Expect = 9e-08
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Frame = +1
Query: 745 TGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECC 924
+GH V +A G + S DR++K+W++A +L GH V + +R
Sbjct: 192 SGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTRSPY 251
Query: 925 VTAGGRDGTVRVWKIPEESQLV--FYGHQGSIDSIQL-INEEHMVSGADDGSVALWGLSK 1095
+ + G D V+ W + E ++++ ++GH ++ + L + +V+ + D + +W +
Sbjct: 252 LFSCGEDKQVKCWDL-EYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRT 310
Query: 1096 KRPLALQREAHGLRGEQGLEQPFWVSSVAALLNTDLIATGSHNNSVRLWQCGEGFRQLDL 1275
K H L G V++V I TGSH+ ++RLW G ++ L
Sbjct: 311 K------ASVHTLSGHTNA-----VATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTL 359
Score = 54.3 bits (129), Expect = 3e-07
Identities = 32/172 (18%), Positives = 74/172 (43%)
Frame = +1
Query: 448 IRILRGHQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKLHVIPRAKKGAEGQPPGH 627
IR GH ++ L + P + + ++D T W V + +H + GH
Sbjct: 272 IRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDVRTKASVHTL-----------SGH 320
Query: 628 SSHILCMAISSDGKYLASGDRSKLILIWEAQSCRHLYTFTGHRDAVSGLAFRRGTHQLYS 807
++ + + + + +G I +W+ + + T T H+ +V + H ++
Sbjct: 321 TNAVATVRCQAAEPQIITGSHDTTIRLWDLVAGKTRVTLTNHKKSVRAVVL-HPRHYTFA 379
Query: 808 TSHDRSVKVWNVAENSYVETLFGHQDAVAALDALSRECCVTAGGRDGTVRVW 963
+ ++K W + S+++ L GH + L ++ + + +G +GT+ +W
Sbjct: 380 SGSPDNIKQWKFPDGSFIQNLSGHNAIINTL-TVNSDGVLVSGADNGTMHLW 430
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 53,299,026
Number of extensions: 1605400
Number of successful extensions: 9984
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 8876
Number of HSP's successfully gapped: 267
Length of query: 462
Length of database: 18,297,164
Length adjustment: 106
Effective length of query: 356
Effective length of database: 14,802,980
Effective search space: 5269860880
Effective search space used: 5269860880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008783
(1388 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr13 293 1e-76
>Sscrofa_Chr13
|| Length = 218635234
Score = 293 bits (148), Expect = 1e-76
Identities = 148/148 (100%)
Strand = Plus / Minus
Query: 1067 gctctgtggccttgtggggcctctccaagaagcggccgcttgccctgcagcgtgaggccc 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265387 gctctgtggccttgtggggcctctccaagaagcggccgcttgccctgcagcgtgaggccc 37265328
Query: 1127 atgggctgcggggggagcagggcttggagcagcccttctgggtgtcgtcagtggcggccc 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265327 atgggctgcggggggagcagggcttggagcagcccttctgggtgtcgtcagtggcggccc 37265268
Query: 1187 tgctcaacacagacctcatagccacagg 1214
||||||||||||||||||||||||||||
Sbjct: 37265267 tgctcaacacagacctcatagccacagg 37265240
Score = 270 bits (136), Expect = 2e-69
Identities = 136/136 (100%)
Strand = Plus / Minus
Query: 870 cttcgggcaccaggatgctgtggctgcactggatgccctgagcagggagtgctgcgtgac 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265817 cttcgggcaccaggatgctgtggctgcactggatgccctgagcagggagtgctgcgtgac 37265758
Query: 930 agcggggggccgggatgggactgtgcgtgtgtggaagatccctgaggagtctcagcttgt 989
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265757 agcggggggccgggatgggactgtgcgtgtgtggaagatccctgaggagtctcagcttgt 37265698
Query: 990 cttctacggccaccag 1005
||||||||||||||||
Sbjct: 37265697 cttctacggccaccag 37265682
Score = 258 bits (130), Expect = 7e-66
Identities = 130/130 (100%)
Strand = Plus / Minus
Query: 422 agatccaggccccagccccagccgacatccgaatcttacggggccaccagctttccatca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37267430 agatccaggccccagccccagccgacatccgaatcttacggggccaccagctttccatca 37267371
Query: 482 catgtttggttatcacccctgacgacctggccatcttttctgccgccaaagactgcacca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37267370 catgtttggttatcacccctgacgacctggccatcttttctgccgccaaagactgcacca 37267311
Query: 542 ttattaagtg 551
||||||||||
Sbjct: 37267310 ttattaagtg 37267301
Score = 250 bits (126), Expect = 2e-63
Identities = 126/126 (100%)
Strand = Plus / Minus
Query: 551 ggagcgtggagagtggacggaagcttcatgtcatccctcgagccaagaagggtgctgagg 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266694 ggagcgtggagagtggacggaagcttcatgtcatccctcgagccaagaagggtgctgagg 37266635
Query: 611 ggcagccccctggccacagcagccacatcctttgcatggccatctcttctgatggcaagt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266634 ggcagccccctggccacagcagccacatcctttgcatggccatctcttctgatggcaagt 37266575
Query: 671 acctgg 676
||||||
Sbjct: 37266574 acctgg 37266569
Score = 238 bits (120), Expect = 7e-60
Identities = 120/120 (100%)
Strand = Plus / Minus
Query: 2 ctcggtgttagctgcaaggcatagtgggcgacatgtcggcgaccgtggcggctcgaaagc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37271919 ctcggtgttagctgcaaggcatagtgggcgacatgtcggcgaccgtggcggctcgaaagc 37271860
Query: 62 ggggaaagtcagcctcaggagccggggctggtgcgggggccggcaagcggcggcgaaagg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37271859 ggggaaagtcagcctcaggagccggggctggtgcgggggccggcaagcggcggcgaaagg 37271800
Score = 202 bits (102), Expect = 4e-49
Identities = 102/102 (100%)
Strand = Plus / Minus
Query: 768 ggggctggcgttccgtagaggcacccaccagctctacagcacgtcccatgaccgctccgt 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266000 ggggctggcgttccgtagaggcacccaccagctctacagcacgtcccatgaccgctccgt 37265941
Query: 828 gaaggtgtggaatgtggcagagaactcctacgtggagacact 869
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265940 gaaggtgtggaatgtggcagagaactcctacgtggagacact 37265899
Score = 188 bits (95), Expect = 6e-45
Identities = 95/95 (100%)
Strand = Plus / Minus
Query: 675 ggcctcaggtgaccgcagcaagctcattctcatctgggaggcgcagagctgccggcacct 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37266488 ggcctcaggtgaccgcagcaagctcattctcatctgggaggcgcagagctgccggcacct 37266429
Query: 735 gtacaccttcacaggacaccgggacgccgtgtcgg 769
|||||||||||||||||||||||||||||||||||
Sbjct: 37266428 gtacaccttcacaggacaccgggacgccgtgtcgg 37266394
Score = 170 bits (86), Expect = 1e-39
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1211 caggctcccacaacaactctgtgcggctctggcagtgcggggagggcttccggcagcttg 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265158 caggctcccacaacaactctgtgcggctctggcagtgcggggagggcttccggcagcttg 37265099
Query: 1271 accttctctgcgacatccccttggtg 1296
||||||||||||||||||||||||||
Sbjct: 37265098 accttctctgcgacatccccttggtg 37265073
Score = 168 bits (85), Expect = 5e-39
Identities = 85/85 (100%)
Strand = Plus / Minus
Query: 119 agggcgactcttctggggacaagggcaagtccaagggtggcggcaagatgaatgaggaaa 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37271576 agggcgactcttctggggacaagggcaagtccaagggtggcggcaagatgaatgaggaaa 37271517
Query: 179 tatccagtgactcggaaaatgaaag 203
|||||||||||||||||||||||||
Sbjct: 37271516 tatccagtgactcggaaaatgaaag 37271492
Score = 151 bits (76), Expect = 1e-33
Identities = 76/76 (100%)
Strand = Plus / Minus
Query: 1293 ggtgggctttatcaatagtctcaagttctccagtgctggggacttcctggtggccggggt 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37264412 ggtgggctttatcaatagtctcaagttctccagtgctggggacttcctggtggccggggt 37264353
Query: 1353 ggggcaggagcacagg 1368
||||||||||||||||
Sbjct: 37264352 ggggcaggagcacagg 37264337
Score = 147 bits (74), Expect = 2e-32
Identities = 74/74 (100%)
Strand = Plus / Minus
Query: 240 agagttggaagagactgcacaggagaagaagttgcgcttggccaagctttatcttgagca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37268339 agagttggaagagactgcacaggagaagaagttgcgcttggccaagctttatcttgagca 37268280
Query: 300 gctcaagcagcaag 313
||||||||||||||
Sbjct: 37268279 gctcaagcagcaag 37268266
Score = 139 bits (70), Expect = 5e-30
Identities = 70/70 (100%)
Strand = Plus / Minus
Query: 312 agaggaggagaaggctgaggcccgtgaatttgaggaggaccaggtggcgggaaaactgaa 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37267878 agaggaggagaaggctgaggcccgtgaatttgaggaggaccaggtggcgggaaaactgaa 37267819
Query: 372 ggaggacgtg 381
||||||||||
Sbjct: 37267818 ggaggacgtg 37267809
Score = 125 bits (63), Expect = 7e-26
Identities = 63/63 (100%)
Strand = Plus / Minus
Query: 1005 gggctccatcgacagcatccagctcatcaacgaggagcacatggtgtcaggtgctgatga 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37265599 gggctccatcgacagcatccagctcatcaacgaggagcacatggtgtcaggtgctgatga 37265540
Query: 1065 tgg 1067
|||
Sbjct: 37265539 tgg 37265537
Score = 85.7 bits (43), Expect = 6e-14
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 381 gctcgagcagaggggcaggctgcagaagtcggtggcaaaggag 423
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37267727 gctcgagcagaggggcaggctgcagaagtcggtggcaaaggag 37267685
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 36,246,942
Number of extensions: 239
Number of successful extensions: 239
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 14
Length of query: 1388
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 1367
Effective length of database: 2,808,413,156
Effective search space: 3839100784252
Effective search space used: 3839100784252
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)