Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035634.1| BAG family molecular chaperone regulator 5 [... 673 0.0
Alignment gi|NP_001075940.1| BAG family molecular chaperone regulator 3 [... 74 5e-13
Alignment gi|NP_001104002.1| BAG family molecular chaperone regulator 4 [... 67 3e-11
>ref|NP_001035634.1| BAG family molecular chaperone regulator 5 [Bos taurus].
Length = 447
Score = 673 bits (1737), Expect = 0.0
Identities = 342/413 (82%), Positives = 369/413 (89%)
Frame = +2
Query: 344 MAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEG 523
M MGNQHPSISRLQEIQKEVKSIEQQV FSGLSDDK YKKLERILTKQLFEIDSVDTEG
Sbjct: 1 MEMGNQHPSISRLQEIQKEVKSIEQQVLGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG 60
Query: 524 KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVPFHSGGSCVT 703
KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQ+IFQEAQ+LVKEK+VPF++GG+CVT
Sbjct: 61 KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQNIFQEAQALVKEKVVPFYNGGNCVT 120
Query: 704 EEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLPLSADAH 883
+EFEEGIQDVILRLT VKTGG+ SLRKARYHTLTK+CAVQEIIE+C +K PSLPLS DAH
Sbjct: 121 DEFEEGIQDVILRLTHVKTGGKVSLRKARYHTLTKICAVQEIIENCMKKQPSLPLSEDAH 180
Query: 884 PSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCGHTEIRN 1063
PSVAKINSVMC+VN+ RGTLIALLMGV++ ETCRHLSCVLSGLMADLDALDVCGHTEIRN
Sbjct: 181 PSVAKINSVMCEVNKTRGTLIALLMGVNNKETCRHLSCVLSGLMADLDALDVCGHTEIRN 240
Query: 1064 YRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKNELLRAQNPA 1243
YRKEVVEDIN+LL+YLDLEEEADTT+AFDLGQNHSILKIEKVL R+REIK ELL+AQNP
Sbjct: 241 YRKEVVEDINQLLRYLDLEEEADTTHAFDLGQNHSILKIEKVLKRMREIKTELLQAQNPP 300
Query: 1244 ELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREALEKRRALAS 1423
ELYLS+KTELQGLIGQLDEVSLEKNPCI QTLITY+DL+EALEKR+ LA
Sbjct: 301 ELYLSAKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLLAC 360
Query: 1424 AEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDAVD 1582
EHPS AVW +LG+LSEIQ EVL+FDGNRTDKNYIR DAVD
Sbjct: 361 EEHPSHKAVWDVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVD 413
Score = 68.2 bits (165), Expect = 2e-11
Identities = 58/267 (21%), Positives = 129/267 (48%), Gaps = 12/267 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+++ +T + L +L+ + ++D++D G +I+
Sbjct: 180 HPSVAKINSVMCEVNKTRGTLIALLMGVNNKETCRHLSCVLSGLMADLDALDVCGHTEIR 239
Query: 539 QARKRAAQETERLLK--ELEQNANHPHR---------LEIQHIFQEAQSLVKEKIVPFHS 685
RK ++ +LL+ +LE+ A+ H L+I+ + + + + E + +
Sbjct: 240 NYRKEVVEDINQLLRYLDLEEEADTTHAFDLGQNHSILKIEKVLKRMREIKTELLQAQNP 299
Query: 686 GGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLP 865
++ + E +Q +I +L V +R+AR + +V + I+
Sbjct: 300 PELYLSAKTE--LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKL 357
Query: 866 LSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCG 1045
L+ + HPS + V+ +++ +G +++ G +D+ L +L+ + LDA+D G
Sbjct: 358 LACEEHPSHKAVWDVLGNLSEIQGEVLSF-DGNRTDKNYIRLEELLTKQLLALDAVDPQG 416
Query: 1046 HTEIRNYRKEVVEDINKLLKYLDLEEE 1126
+ + RK+ V+ +L YLDL+ +
Sbjct: 417 EEKCKAARKQAVKLAQNILSYLDLKSD 443
Score = 57.4 bits (137), Expect = 4e-08
Identities = 27/78 (34%), Positives = 47/78 (60%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HPS + ++ + I+ +V +F G DK Y +LE +LTKQL +D+VD +G+ +
Sbjct: 362 EHPSHKAVWDVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCK 421
Query: 539 QARKRAAQETERLLKELE 592
ARK+A + + +L L+
Sbjct: 422 AARKQAVKLAQNILSYLD 439
>ref|NP_001075940.1| BAG family molecular chaperone regulator 3 [Bos taurus].
Length = 585
Score = 73.6 bits (179), Expect = 5e-13
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + +++ I ++V+ +EQ V F G DK Y +E LTK+L +DSVD EG+ D++
Sbjct: 431 KHPGVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVR 490
Query: 539 QARKRAAQETERLLKELEQNA-----------NHPHRLEIQHIFQEAQSLVKEK 667
QAR+ ++ + +L++LEQ A P LE QE + +K
Sbjct: 491 QARRDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSSLETDQPLQEIMEMAADK 544
>ref|NP_001104002.1| BAG family molecular chaperone regulator 4 [Bos taurus].
Length = 457
Score = 67.4 bits (163), Expect = 3e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 365 PSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQQA 544
PSI ++ + ++V+ +EQ+V F G DK Y LE +LTK+L E+DSV+T G+ ++QA
Sbjct: 378 PSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQA 437
Query: 545 RKRAAQETERLLKELEQ 595
RK A + + +L++LE+
Sbjct: 438 RKEAVCKIQAILEKLEK 454
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 49,778,959
Number of extensions: 1238543
Number of successful extensions: 5841
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5830
Number of HSP's successfully gapped: 5
Length of query: 528
Length of database: 17,681,374
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,140,958
Effective search space: 5953343318
Effective search space used: 5953343318
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_537562.2| PREDICTED: similar to BCL2-associated athanogen... 695 0.0
Alignment gi|XP_544046.2| PREDICTED: similar to BAG-family molecular chap... 72 1e-12
Alignment gi|XP_849918.1| PREDICTED: similar to BAG-family molecular chap... 67 4e-11
>ref|XP_537562.2| PREDICTED: similar to BCL2-associated athanogene 5 isoform a [Canis
familiaris].
Length = 576
Score = 695 bits (1793), Expect = 0.0
Identities = 352/422 (83%), Positives = 382/422 (90%)
Frame = +2
Query: 317 ACETEHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLF 496
AC+TEHN+SM MGNQHPSISRLQEIQKEVKSIEQQV FSGLSDDK YKKLERILTKQLF
Sbjct: 121 ACKTEHNKSMDMGNQHPSISRLQEIQKEVKSIEQQVIGFSGLSDDKNYKKLERILTKQLF 180
Query: 497 EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVP 676
EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHR+EIQ+IF+EAQ+LVKEKIVP
Sbjct: 181 EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFKEAQALVKEKIVP 240
Query: 677 FHSGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPP 856
F+SGG+CVT+EFEEGIQD+ILRLT VKTGG+ SLRKARYHTLTK+CAVQEIIEDC +K P
Sbjct: 241 FYSGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCVKKQP 300
Query: 857 SLPLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALD 1036
SLPLS DAHPSVAKINSVMC+VN+ARGTLIALLMGV+++ETCRHLSCVLSGL+ADLDALD
Sbjct: 301 SLPLSEDAHPSVAKINSVMCEVNKARGTLIALLMGVNNNETCRHLSCVLSGLIADLDALD 360
Query: 1037 VCGHTEIRNYRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKN 1216
VCG TEIRNYR+EVVEDIN+LLKYLDLEEEADTT+AFDLGQNHSILKIEKVL R+REIKN
Sbjct: 361 VCGRTEIRNYRREVVEDINQLLKYLDLEEEADTTHAFDLGQNHSILKIEKVLKRMREIKN 420
Query: 1217 ELLRAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREA 1396
ELL+AQNPAELYLSSKTELQGLIGQLDEVSLEKNPCI QTLITY+DL+EA
Sbjct: 421 ELLQAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEA 480
Query: 1397 LEKRRALASAEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDA 1576
LEKR++ AS EHPS AVW ILG+LSEIQ EVL+FDGNRTDKNYIR DA
Sbjct: 481 LEKRKSFASEEHPSHKAVWNILGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDA 540
Query: 1577 VD 1582
VD
Sbjct: 541 VD 542
Score = 71.2 bits (173), Expect = 3e-12
Identities = 56/267 (20%), Positives = 132/267 (49%), Gaps = 12/267 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+++++T + L +L+ + ++D++D G+ +I+
Sbjct: 309 HPSVAKINSVMCEVNKARGTLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIR 368
Query: 539 QARKRAAQETERLLK--ELEQNANHPHR---------LEIQHIFQEAQSLVKEKIVPFHS 685
R+ ++ +LLK +LE+ A+ H L+I+ + + + + E + +
Sbjct: 369 NYRREVVEDINQLLKYLDLEEEADTTHAFDLGQNHSILKIEKVLKRMREIKNELLQAQNP 428
Query: 686 GGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLP 865
++ + E +Q +I +L V +R+AR + +V + I+
Sbjct: 429 AELYLSSKTE--LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKS 486
Query: 866 LSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCG 1045
+++ HPS + +++ +++ +G +++ G +D+ L +L+ + LDA+D G
Sbjct: 487 FASEEHPSHKAVWNILGNLSEIQGEVLSF-DGNRTDKNYIRLEELLTKQLLALDAVDPQG 545
Query: 1046 HTEIRNYRKEVVEDINKLLKYLDLEEE 1126
+ + RK+ V+ +L YLDL+ +
Sbjct: 546 EEKCKAARKQAVKLAQNILSYLDLKSD 572
Score = 57.4 bits (137), Expect = 4e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 329 EHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDS 508
E +S A +HPS + I + I+ +V +F G DK Y +LE +LTKQL +D+
Sbjct: 482 EKRKSFA-SEEHPSHKAVWNILGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDA 540
Query: 509 VDTEGKGDIQQARKRAAQETERLLKELE 592
VD +G+ + ARK+A + + +L L+
Sbjct: 541 VDPQGEEKCKAARKQAVKLAQNILSYLD 568
>ref|XP_544046.2| PREDICTED: similar to BAG-family molecular chaperone regulator-3
(BCL-2 binding athanogene-3) (BAG-3) (Bcl-2-binding
protein Bis) (Docking protein CAIR-1) [Canis
familiaris].
Length = 579
Score = 72.4 bits (176), Expect = 1e-12
Identities = 32/81 (39%), Positives = 53/81 (65%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + +++ I + V+ +EQ V F G DK Y +E LTK+L +DSVD EG+ D++
Sbjct: 422 KHPGVLKVEAILQNVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVR 481
Query: 539 QARKRAAQETERLLKELEQNA 601
QAR+ ++ + +L++LEQ A
Sbjct: 482 QARRDGVRKVQTILEKLEQKA 502
>ref|XP_849918.1| PREDICTED: similar to BAG-family molecular chaperone regulator-4
(BCL2-associated athanogene 4) (BAG-4) (Silencer of
death domains) [Canis familiaris].
Length = 457
Score = 67.4 bits (163), Expect = 4e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 365 PSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQQA 544
PSI ++ + ++V+ +EQ+V F G DK Y LE +LTK+L E+DSV+T G+ ++QA
Sbjct: 378 PSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQA 437
Query: 545 RKRAAQETERLLKELEQ 595
RK A + + +L++LE+
Sbjct: 438 RKEAVCKIQAILEKLEK 454
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 51,831,992
Number of extensions: 1226709
Number of successful extensions: 6120
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 6113
Number of HSP's successfully gapped: 5
Length of query: 528
Length of database: 18,874,504
Length adjustment: 107
Effective length of query: 421
Effective length of database: 15,307,552
Effective search space: 6444479392
Effective search space used: 6444479392
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003362218.1| PREDICTED: BAG family molecular chaperone re... 736 0.0
Alignment gi|XP_001929035.1| PREDICTED: BAG family molecular chaperone re... 74 3e-13
>ref|XP_003362218.1| PREDICTED: BAG family molecular chaperone regulator 5-like, partial
[Sus scrofa].
Length = 422
Score = 736 bits (1900), Expect = 0.0
Identities = 383/422 (90%), Positives = 383/422 (90%)
Frame = +2
Query: 317 ACETEHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLF 496
ACETEHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLF
Sbjct: 1 ACETEHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLF 60
Query: 497 EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVP 676
EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVP
Sbjct: 61 EIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVP 120
Query: 677 FHSGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPP 856
FHSGGS GIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPP
Sbjct: 121 FHSGGSXXXXXXXXGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPP 180
Query: 857 SLPLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALD 1036
SLPLSADAHPSVAKINSVMCDV ALLMGVSSDETCRHLSCVLSGLMADLDALD
Sbjct: 181 SLPLSADAHPSVAKINSVMCDVXXXXXXXXALLMGVSSDETCRHLSCVLSGLMADLDALD 240
Query: 1037 VCGHTEIRNYRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKN 1216
VCGHTEIRNYRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKN
Sbjct: 241 VCGHTEIRNYRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKN 300
Query: 1217 ELLRAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREA 1396
ELLRAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCI QTLITYVDLREA
Sbjct: 301 ELLRAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVVEVQTLITYVDLREA 360
Query: 1397 LEKRRALASAEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDA 1576
LEKRRALASAEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIR DA
Sbjct: 361 LEKRRALASAEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRLEELLTKQLLALDA 420
Query: 1577 VD 1582
VD
Sbjct: 421 VD 422
>ref|XP_001929035.1| PREDICTED: BAG family molecular chaperone regulator 3 [Sus scrofa].
Length = 574
Score = 73.6 bits (179), Expect = 3e-13
Identities = 38/114 (33%), Positives = 62/114 (54%), Gaps = 11/114 (9%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + +++ I ++V+ +EQ V F G DK Y +E LTK+L +DSVD EG+ D++
Sbjct: 420 KHPGVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVR 479
Query: 539 QARKRAAQETERLLKELEQNA-----------NHPHRLEIQHIFQEAQSLVKEK 667
QAR+ ++ + +L++LEQ A P LE QE + +K
Sbjct: 480 QARRDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSSLETDQPLQEIMEMAADK 533
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 32,624,660
Number of extensions: 877874
Number of successful extensions: 3670
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3661
Number of HSP's successfully gapped: 2
Length of query: 528
Length of database: 11,343,932
Length adjustment: 104
Effective length of query: 424
Effective length of database: 8,754,644
Effective search space: 3711969056
Effective search space used: 3711969056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_081680.1| BAG family molecular chaperone regulator 5 [Mus... 642 0.0
Alignment gi|NP_038891.4| BAG family molecular chaperone regulator 3 [Mus... 74 2e-13
Alignment gi|NP_080397.1| BAG family molecular chaperone regulator 4 [Mus... 67 3e-11
>ref|NP_081680.1| BAG family molecular chaperone regulator 5 [Mus musculus].
Length = 447
Score = 642 bits (1657), Expect = 0.0
Identities = 326/413 (78%), Positives = 358/413 (86%)
Frame = +2
Query: 344 MAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEG 523
M MGNQHPSISRLQEIQ+EVK+IE QV FSGLSDDK YK+LERILTKQLFEIDSVDTEG
Sbjct: 1 MDMGNQHPSISRLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEG 60
Query: 524 KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVPFHSGGSCVT 703
KGDIQQARKRAAQETERLLKELEQNANHPHR+EIQ+IF+EAQ+LVK+KIVPF+SGG+CVT
Sbjct: 61 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFKEAQALVKDKIVPFYSGGNCVT 120
Query: 704 EEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLPLSADAH 883
+EFEEGIQD+ILRLT VKTGG+ SLRKARY TLTK+CAVQE+IEDC +K PSLPLS D H
Sbjct: 121 DEFEEGIQDIILRLTHVKTGGKVSLRKARYRTLTKICAVQEVIEDCMKKQPSLPLSEDVH 180
Query: 884 PSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCGHTEIRN 1063
PSVAKINSVMC+VN+ARGTLIALLMGV S ETCRHLSCVLSGL+ADLDALDVCG TEIRN
Sbjct: 181 PSVAKINSVMCEVNKARGTLIALLMGVDSSETCRHLSCVLSGLIADLDALDVCGRTEIRN 240
Query: 1064 YRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKNELLRAQNPA 1243
YR+EVVEDINKLLKYLDLEEEAD+T+AFDLGQNHSI+KIE VL R+REIKNELL+AQ+P
Sbjct: 241 YRREVVEDINKLLKYLDLEEEADSTHAFDLGQNHSIIKIENVLKRMREIKNELLQAQSPP 300
Query: 1244 ELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREALEKRRALAS 1423
ELYL +KTELQGLIGQLDEVSLEKNPCI Q LITY+DL+EALEKR+
Sbjct: 301 ELYLRAKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQILITYLDLKEALEKRKLFPC 360
Query: 1424 AEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDAVD 1582
EHP AVW ILG+LSEI EVL+F GNRTDKNYIR DAVD
Sbjct: 361 EEHPPHKAVWEILGNLSEILGEVLSFGGNRTDKNYIRLEELLTKQLLALDAVD 413
Score = 62.0 bits (149), Expect = 1e-09
Identities = 53/267 (19%), Positives = 124/267 (46%), Gaps = 12/267 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+ +T + L +L+ + ++D++D G+ +I+
Sbjct: 180 HPSVAKINSVMCEVNKARGTLIALLMGVDSSETCRHLSCVLSGLIADLDALDVCGRTEIR 239
Query: 539 QARKRAAQETERLLK--ELEQNANHPHR---------LEIQHIFQEAQSLVKEKIVPFHS 685
R+ ++ +LLK +LE+ A+ H ++I+++ + + +K +++ S
Sbjct: 240 NYRREVVEDINKLLKYLDLEEEADSTHAFDLGQNHSIIKIENVLKRMRE-IKNELLQAQS 298
Query: 686 GGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLP 865
E +Q +I +L V +R+AR + +V + ++
Sbjct: 299 PPELYLRAKTE-LQGLIGQLDEVSLEKNPCIREARRRAVIEVQILITYLDLKEALEKRKL 357
Query: 866 LSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCG 1045
+ HP + ++ +++ G +++ G +D+ L +L+ + LDA+D G
Sbjct: 358 FPCEEHPPHKAVWEILGNLSEILGEVLSF-GGNRTDKNYIRLEELLTKQLLALDAVDPQG 416
Query: 1046 HTEIRNYRKEVVEDINKLLKYLDLEEE 1126
+ + RK+ V+ +L YLD++ +
Sbjct: 417 EEKCKAARKQAVKLAQNILSYLDMKSD 443
Score = 55.8 bits (133), Expect = 9e-08
Identities = 28/82 (34%), Positives = 47/82 (57%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + EI + I +V +F G DK Y +LE +LTKQL +D+VD +G+ +
Sbjct: 362 EHPPHKAVWEILGNLSEILGEVLSFGGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCK 421
Query: 539 QARKRAAQETERLLKELEQNAN 604
ARK+A + + +L L+ ++
Sbjct: 422 AARKQAVKLAQNILSYLDMKSD 443
>ref|NP_038891.4| BAG family molecular chaperone regulator 3 [Mus musculus].
Length = 577
Score = 74.3 bits (181), Expect = 2e-13
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 14/133 (10%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + +++ I ++V+ +EQ V +F G DK Y +E LTK+L +DSVD EG+ D++
Sbjct: 423 KHPGVLKVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVR 482
Query: 539 QARKRAAQETERLLKELEQNA-----------NHPHRLEIQHIFQEAQSLV---KEKIVP 676
QAR+ ++ + +L++LEQ A P LE + QE V K+K P
Sbjct: 483 QARRDGVRKVQTILEKLEQKAIDVPGQVQVYELQPSNLEAEQPLQEIMGAVVADKDKKGP 542
Query: 677 FHSGGSCVTEEFE 715
+ +++ E
Sbjct: 543 ENKDPQTESQQLE 555
>ref|NP_080397.1| BAG family molecular chaperone regulator 4 [Mus musculus].
Length = 457
Score = 67.4 bits (163), Expect = 3e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 365 PSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQQA 544
PSI ++ + ++V+ +EQ+V F G DK Y LE +LTK+L E+DSV+T G+ ++QA
Sbjct: 378 PSIKKIIHVLEKVQFLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQA 437
Query: 545 RKRAAQETERLLKELEQ 595
RK A + + +L++LE+
Sbjct: 438 RKEAVCKIQAILEKLEK 454
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 42,584,648
Number of extensions: 985488
Number of successful extensions: 4616
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4606
Number of HSP's successfully gapped: 5
Length of query: 528
Length of database: 15,617,559
Length adjustment: 106
Effective length of query: 422
Effective length of database: 12,433,743
Effective search space: 5247039546
Effective search space used: 5247039546
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001015049.1| BAG family molecular chaperone regulator 5 i... 685 0.0
Alignment gi|NP_004864.1| BAG family molecular chaperone regulator 5 isof... 665 0.0
Alignment gi|NP_001015048.1| BAG family molecular chaperone regulator 5 i... 665 0.0
Alignment gi|NP_004272.2| BAG family molecular chaperone regulator 3 [Hom... 73 8e-13
Alignment gi|NP_001191807.1| BAG family molecular chaperone regulator 4 i... 67 4e-11
Alignment gi|NP_004865.1| BAG family molecular chaperone regulator 4 isof... 67 4e-11
>ref|NP_001015049.1| BAG family molecular chaperone regulator 5 isoform a [Homo sapiens].
Length = 488
Score = 685 bits (1768), Expect = 0.0
Identities = 347/423 (82%), Positives = 377/423 (89%)
Frame = +2
Query: 314 SACETEHNQSMAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQL 493
SACETEHN+SM MGNQHPSISRLQEIQKEVKS+EQQV FSGLSDDK YKKLERILTKQL
Sbjct: 32 SACETEHNKSMDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQL 91
Query: 494 FEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIV 673
FEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHR+EIQ+IF+EAQSLV+EKIV
Sbjct: 92 FEIDSVDTEGKGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIV 151
Query: 674 PFHSGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKP 853
PF++GG+CVT+EFEEGIQD+ILRLT VKTGG+ SLRKARYHTLTK+CAVQEIIEDC +K
Sbjct: 152 PFYNGGNCVTDEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQ 211
Query: 854 PSLPLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDAL 1033
PSLPLS DAHPSVAKIN VMC+VN+ARG LIALLMGV+++ETCRHLSCVLSGL+ADLDAL
Sbjct: 212 PSLPLSEDAHPSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDAL 271
Query: 1034 DVCGHTEIRNYRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIK 1213
DVCG TEIRNYR+EVVEDINKLLKYLDLEEEADTT AFDL QNHSILKIEKVL R+REIK
Sbjct: 272 DVCGRTEIRNYRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIK 331
Query: 1214 NELLRAQNPAELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLRE 1393
NELL+AQNP+ELYLSSKTELQGLIGQLDEVSLEKNPCI QTLITY+DL+E
Sbjct: 332 NELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKE 391
Query: 1394 ALEKRRALASAEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXD 1573
ALEKR+ A EHPS AVW +LG+LSEIQ EVL+FDGNRTDKNYIR D
Sbjct: 392 ALEKRKLFACEEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALD 451
Query: 1574 AVD 1582
AVD
Sbjct: 452 AVD 454
Score = 65.9 bits (159), Expect = 1e-10
Identities = 58/268 (21%), Positives = 130/268 (48%), Gaps = 13/268 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+++++T + L +L+ + ++D++D G+ +I+
Sbjct: 221 HPSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIR 280
Query: 539 QARKRAAQETERLLK--ELEQNA----------NHPHRLEIQHIFQEAQSLVKEKIVPFH 682
R+ ++ +LLK +LE+ A NH L+I+ + + + + E + +
Sbjct: 281 NYRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSI-LKIEKVLKRMREIKNELLQAQN 339
Query: 683 SGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSL 862
++ + E +Q +I +L V +R+AR + +V + I+
Sbjct: 340 PSELYLSSKTE--LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRK 397
Query: 863 PLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVC 1042
+ + HPS + +V+ +++ +G +++ G +D+ L +L+ + LDA+D
Sbjct: 398 LFACEEHPSHKAVWNVLGNLSEIQGEVLSF-DGNRTDKNYIRLEELLTKQLLALDAVDPQ 456
Query: 1043 GHTEIRNYRKEVVEDINKLLKYLDLEEE 1126
G + + RK+ V +L YLDL+ +
Sbjct: 457 GEEKCKAARKQAVRLAQNILSYLDLKSD 484
Score = 56.6 bits (135), Expect = 6e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HPS + + + I+ +V +F G DK Y +LE +LTKQL +D+VD +G+ +
Sbjct: 403 EHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCK 462
Query: 539 QARKRAAQETERLLKELE 592
ARK+A + + +L L+
Sbjct: 463 AARKQAVRLAQNILSYLD 480
>ref|NP_004864.1| BAG family molecular chaperone regulator 5 isoform b [Homo sapiens].
Length = 447
Score = 665 bits (1717), Expect = 0.0
Identities = 338/413 (81%), Positives = 367/413 (88%)
Frame = +2
Query: 344 MAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEG 523
M MGNQHPSISRLQEIQKEVKS+EQQV FSGLSDDK YKKLERILTKQLFEIDSVDTEG
Sbjct: 1 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG 60
Query: 524 KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVPFHSGGSCVT 703
KGDIQQARKRAAQETERLLKELEQNANHPHR+EIQ+IF+EAQSLV+EKIVPF++GG+CVT
Sbjct: 61 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT 120
Query: 704 EEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLPLSADAH 883
+EFEEGIQD+ILRLT VKTGG+ SLRKARYHTLTK+CAVQEIIEDC +K PSLPLS DAH
Sbjct: 121 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH 180
Query: 884 PSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCGHTEIRN 1063
PSVAKIN VMC+VN+ARG LIALLMGV+++ETCRHLSCVLSGL+ADLDALDVCG TEIRN
Sbjct: 181 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN 240
Query: 1064 YRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKNELLRAQNPA 1243
YR+EVVEDINKLLKYLDLEEEADTT AFDL QNHSILKIEKVL R+REIKNELL+AQNP+
Sbjct: 241 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS 300
Query: 1244 ELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREALEKRRALAS 1423
ELYLSSKTELQGLIGQLDEVSLEKNPCI QTLITY+DL+EALEKR+ A
Sbjct: 301 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC 360
Query: 1424 AEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDAVD 1582
EHPS AVW +LG+LSEIQ EVL+FDGNRTDKNYIR DAVD
Sbjct: 361 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVD 413
Score = 65.9 bits (159), Expect = 1e-10
Identities = 58/268 (21%), Positives = 130/268 (48%), Gaps = 13/268 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+++++T + L +L+ + ++D++D G+ +I+
Sbjct: 180 HPSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIR 239
Query: 539 QARKRAAQETERLLK--ELEQNA----------NHPHRLEIQHIFQEAQSLVKEKIVPFH 682
R+ ++ +LLK +LE+ A NH L+I+ + + + + E + +
Sbjct: 240 NYRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSI-LKIEKVLKRMREIKNELLQAQN 298
Query: 683 SGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSL 862
++ + E +Q +I +L V +R+AR + +V + I+
Sbjct: 299 PSELYLSSKTE--LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRK 356
Query: 863 PLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVC 1042
+ + HPS + +V+ +++ +G +++ G +D+ L +L+ + LDA+D
Sbjct: 357 LFACEEHPSHKAVWNVLGNLSEIQGEVLSF-DGNRTDKNYIRLEELLTKQLLALDAVDPQ 415
Query: 1043 GHTEIRNYRKEVVEDINKLLKYLDLEEE 1126
G + + RK+ V +L YLDL+ +
Sbjct: 416 GEEKCKAARKQAVRLAQNILSYLDLKSD 443
Score = 56.6 bits (135), Expect = 6e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HPS + + + I+ +V +F G DK Y +LE +LTKQL +D+VD +G+ +
Sbjct: 362 EHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCK 421
Query: 539 QARKRAAQETERLLKELE 592
ARK+A + + +L L+
Sbjct: 422 AARKQAVRLAQNILSYLD 439
>ref|NP_001015048.1| BAG family molecular chaperone regulator 5 isoform b [Homo sapiens].
Length = 447
Score = 665 bits (1717), Expect = 0.0
Identities = 338/413 (81%), Positives = 367/413 (88%)
Frame = +2
Query: 344 MAMGNQHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEG 523
M MGNQHPSISRLQEIQKEVKS+EQQV FSGLSDDK YKKLERILTKQLFEIDSVDTEG
Sbjct: 1 MDMGNQHPSISRLQEIQKEVKSVEQQVIGFSGLSDDKNYKKLERILTKQLFEIDSVDTEG 60
Query: 524 KGDIQQARKRAAQETERLLKELEQNANHPHRLEIQHIFQEAQSLVKEKIVPFHSGGSCVT 703
KGDIQQARKRAAQETERLLKELEQNANHPHR+EIQ+IF+EAQSLV+EKIVPF++GG+CVT
Sbjct: 61 KGDIQQARKRAAQETERLLKELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVT 120
Query: 704 EEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSLPLSADAH 883
+EFEEGIQD+ILRLT VKTGG+ SLRKARYHTLTK+CAVQEIIEDC +K PSLPLS DAH
Sbjct: 121 DEFEEGIQDIILRLTHVKTGGKISLRKARYHTLTKICAVQEIIEDCMKKQPSLPLSEDAH 180
Query: 884 PSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVCGHTEIRN 1063
PSVAKIN VMC+VN+ARG LIALLMGV+++ETCRHLSCVLSGL+ADLDALDVCG TEIRN
Sbjct: 181 PSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIRN 240
Query: 1064 YRKEVVEDINKLLKYLDLEEEADTTYAFDLGQNHSILKIEKVLTRVREIKNELLRAQNPA 1243
YR+EVVEDINKLLKYLDLEEEADTT AFDL QNHSILKIEKVL R+REIKNELL+AQNP+
Sbjct: 241 YRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSILKIEKVLKRMREIKNELLQAQNPS 300
Query: 1244 ELYLSSKTELQGLIGQLDEVSLEKNPCIXXXXXXXXXXXQTLITYVDLREALEKRRALAS 1423
ELYLSSKTELQGLIGQLDEVSLEKNPCI QTLITY+DL+EALEKR+ A
Sbjct: 301 ELYLSSKTELQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRKLFAC 360
Query: 1424 AEHPSLAAVWTILGHLSEIQEEVLAFDGNRTDKNYIRXXXXXXXXXXXXDAVD 1582
EHPS AVW +LG+LSEIQ EVL+FDGNRTDKNYIR DAVD
Sbjct: 361 EEHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVD 413
Score = 65.9 bits (159), Expect = 1e-10
Identities = 58/268 (21%), Positives = 130/268 (48%), Gaps = 13/268 (4%)
Frame = +2
Query: 362 HPSISRLQEIQKEVKSIEQQVTAF-SGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
HPS++++ + EV + A G+++++T + L +L+ + ++D++D G+ +I+
Sbjct: 180 HPSVAKINFVMCEVNKARGVLIALLMGVNNNETCRHLSCVLSGLIADLDALDVCGRTEIR 239
Query: 539 QARKRAAQETERLLK--ELEQNA----------NHPHRLEIQHIFQEAQSLVKEKIVPFH 682
R+ ++ +LLK +LE+ A NH L+I+ + + + + E + +
Sbjct: 240 NYRREVVEDINKLLKYLDLEEEADTTKAFDLRQNHSI-LKIEKVLKRMREIKNELLQAQN 298
Query: 683 SGGSCVTEEFEEGIQDVILRLTRVKTGGRTSLRKARYHTLTKVCAVQEIIEDCGRKPPSL 862
++ + E +Q +I +L V +R+AR + +V + I+
Sbjct: 299 PSELYLSSKTE--LQGLIGQLDEVSLEKNPCIREARRRAVIEVQTLITYIDLKEALEKRK 356
Query: 863 PLSADAHPSVAKINSVMCDVNRARGTLIALLMGVSSDETCRHLSCVLSGLMADLDALDVC 1042
+ + HPS + +V+ +++ +G +++ G +D+ L +L+ + LDA+D
Sbjct: 357 LFACEEHPSHKAVWNVLGNLSEIQGEVLSF-DGNRTDKNYIRLEELLTKQLLALDAVDPQ 415
Query: 1043 GHTEIRNYRKEVVEDINKLLKYLDLEEE 1126
G + + RK+ V +L YLDL+ +
Sbjct: 416 GEEKCKAARKQAVRLAQNILSYLDLKSD 443
Score = 56.6 bits (135), Expect = 6e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HPS + + + I+ +V +F G DK Y +LE +LTKQL +D+VD +G+ +
Sbjct: 362 EHPSHKAVWNVLGNLSEIQGEVLSFDGNRTDKNYIRLEELLTKQLLALDAVDPQGEEKCK 421
Query: 539 QARKRAAQETERLLKELE 592
ARK+A + + +L L+
Sbjct: 422 AARKQAVRLAQNILSYLD 439
>ref|NP_004272.2| BAG family molecular chaperone regulator 3 [Homo sapiens].
Length = 575
Score = 72.8 bits (177), Expect = 8e-13
Identities = 32/81 (39%), Positives = 54/81 (66%)
Frame = +2
Query: 359 QHPSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQ 538
+HP + +++ I ++V+ +EQ V F G DK Y +E LTK+L +DSVD EG+ D++
Sbjct: 418 KHPGVLKVEAILEKVQGLEQAVDNFEGKKTDKKYLMIEEYLTKELLALDSVDPEGRADVR 477
Query: 539 QARKRAAQETERLLKELEQNA 601
QAR+ ++ + +L++LEQ A
Sbjct: 478 QARRDGVRKVQTILEKLEQKA 498
>ref|NP_001191807.1| BAG family molecular chaperone regulator 4 isoform 2 [Homo
sapiens].
Length = 421
Score = 67.4 bits (163), Expect = 4e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 365 PSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQQA 544
PSI ++ + ++V+ +EQ+V F G DK Y LE +LTK+L E+DSV+T G+ ++QA
Sbjct: 342 PSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQA 401
Query: 545 RKRAAQETERLLKELEQ 595
RK A + + +L++LE+
Sbjct: 402 RKEAVCKIQAILEKLEK 418
>ref|NP_004865.1| BAG family molecular chaperone regulator 4 isoform 1 [Homo
sapiens].
Length = 457
Score = 67.4 bits (163), Expect = 4e-11
Identities = 32/77 (41%), Positives = 53/77 (68%)
Frame = +2
Query: 365 PSISRLQEIQKEVKSIEQQVTAFSGLSDDKTYKKLERILTKQLFEIDSVDTEGKGDIQQA 544
PSI ++ + ++V+ +EQ+V F G DK Y LE +LTK+L E+DSV+T G+ ++QA
Sbjct: 378 PSIKKIIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQDSVRQA 437
Query: 545 RKRAAQETERLLKELEQ 595
RK A + + +L++LE+
Sbjct: 438 RKEAVCKIQAILEKLEK 454
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 50,555,798
Number of extensions: 1188480
Number of successful extensions: 5499
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5484
Number of HSP's successfully gapped: 12
Length of query: 528
Length of database: 18,297,164
Length adjustment: 107
Effective length of query: 421
Effective length of database: 14,770,016
Effective search space: 6218176736
Effective search space used: 6218176736
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008785
(1584 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|GL896465.1| Sus scrofa unplaced genomic scaffold chrU_scaffol... 1265 0.0
>gb|GL896465.1| Sus scrofa unplaced genomic scaffold chrU_scaffold802
Length = 27258
Score = 1265 bits (638), Expect = 0.0
Identities = 638/638 (100%)
Strand = Plus / Plus
Query: 947 gccctcctgatgggcgtgagcagtgacgagacctgcaggcacctgtcgtgtgtgctctcg 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6785 gccctcctgatgggcgtgagcagtgacgagacctgcaggcacctgtcgtgtgtgctctcg 6844
Query: 1007 gggctgatggcggatctggacgctttggatgtgtgcgggcacacggaaatcaggaactat 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6845 gggctgatggcggatctggacgctttggatgtgtgcgggcacacggaaatcaggaactat 6904
Query: 1067 cggaaggaggtggtggaggatatcaacaagctgctgaagtacttggacttggaggaggag 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6905 cggaaggaggtggtggaggatatcaacaagctgctgaagtacttggacttggaggaggag 6964
Query: 1127 gcagataccacttacgccttcgacctgggccagaaccactccattctaaagatagagaag 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6965 gcagataccacttacgccttcgacctgggccagaaccactccattctaaagatagagaag 7024
Query: 1187 gtcctcacgcgagtgagagaaataaaaaacgagctcctccgagcccagaatcccgccgag 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7025 gtcctcacgcgagtgagagaaataaaaaacgagctcctccgagcccagaatcccgccgag 7084
Query: 1247 ctgtacctgagctccaaaacggaactgcagggcttgatcggtcagctggacgaggtcagt 1306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7085 ctgtacctgagctccaaaacggaactgcagggcttgatcggtcagctggacgaggtcagt 7144
Query: 1307 cttgagaagaacccctgcatccgggaagccaggagacgggcggtggttgaggtgcagact 1366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7145 cttgagaagaacccctgcatccgggaagccaggagacgggcggtggttgaggtgcagact 7204
Query: 1367 ctcatcacctacgtggacctgagggaggccctggagaagagacgggccctggccagcgcg 1426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7205 ctcatcacctacgtggacctgagggaggccctggagaagagacgggccctggccagcgcg 7264
Query: 1427 gagcacccctcgctcgcggccgtctggaccatcctggggcacttgtcagagatccaggag 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7265 gagcacccctcgctcgcggccgtctggaccatcctggggcacttgtcagagatccaggag 7324
Query: 1487 gaggtgctcgccttcgacggcaaccgaaccgataagaactacatccggctggaggagctg 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7325 gaggtgctcgccttcgacggcaaccgaaccgataagaactacatccggctggaggagctg 7384
Query: 1547 ctcaccaagcagctgctggcgctggacgccgtcgaccc 1584
||||||||||||||||||||||||||||||||||||||
Sbjct: 7385 ctcaccaagcagctgctggcgctggacgccgtcgaccc 7422
Score = 759 bits (383), Expect = 0.0
Identities = 383/383 (100%)
Strand = Plus / Plus
Query: 314 agtgcttgtgaaactgaacacaaccaaagtatggcgatgggaaaccagcatccttctata 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5992 agtgcttgtgaaactgaacacaaccaaagtatggcgatgggaaaccagcatccttctata 6051
Query: 374 agtcggctccaggagatccaaaaggaggtaaaaagcatagaacagcaagtaactgctttc 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6052 agtcggctccaggagatccaaaaggaggtaaaaagcatagaacagcaagtaactgctttc 6111
Query: 434 agtggcctgtcagacgacaagacgtacaagaaactggagaggattctaacgaaacaactc 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6112 agtggcctgtcagacgacaagacgtacaagaaactggagaggattctaacgaaacaactc 6171
Query: 494 tttgaaatagactctgtagatacggaaggcaagggagatattcagcaagcgcggaagagg 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6172 tttgaaatagactctgtagatacggaaggcaagggagatattcagcaagcgcggaagagg 6231
Query: 554 gcggcccaggagacggagcgtcttctcaaagagctggagcagaatgcaaaccacccccac 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6232 gcggcccaggagacggagcgtcttctcaaagagctggagcagaatgcaaaccacccccac 6291
Query: 614 cggctcgagatccagcacattttccaagaagcacagtccctggtgaaagagaagatcgtg 673
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6292 cggctcgagatccagcacattttccaagaagcacagtccctggtgaaagagaagatcgtg 6351
Query: 674 ccctttcacagcggcggcagctg 696
|||||||||||||||||||||||
Sbjct: 6352 ccctttcacagcggcggcagctg 6374
Score = 412 bits (208), Expect = e-112
Identities = 208/208 (100%)
Strand = Plus / Plus
Query: 717 agggcatccaggacgtcatcctgcggctgacgcgcgtcaagacgggcggccggacctcct 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6477 agggcatccaggacgtcatcctgcggctgacgcgcgtcaagacgggcggccggacctcct 6536
Query: 777 tgcggaaggcgcggtatcacaccctaaccaaggtctgcgccgtgcaggagatcatcgagg 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6537 tgcggaaggcgcggtatcacaccctaaccaaggtctgcgccgtgcaggagatcatcgagg 6596
Query: 837 actgcgggagaaagccgccctcgctgccgctctccgccgacgcgcacccctcggtggcca 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6597 actgcgggagaaagccgccctcgctgccgctctccgccgacgcgcacccctcggtggcca 6656
Query: 897 agatcaactccgtgatgtgtgacgtgaa 924
||||||||||||||||||||||||||||
Sbjct: 6657 agatcaactccgtgatgtgtgacgtgaa 6684
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 33,374,114
Number of extensions: 144
Number of successful extensions: 144
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 3
Length of query: 1584
Length of database: 2,808,509,378
Length adjustment: 22
Effective length of query: 1562
Effective length of database: 2,808,408,574
Effective search space: 4386734192588
Effective search space used: 4386734192588
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 30 (60.0 bits)