Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030428.1| alpha-actinin-1 [Bos taurus]. 501 e-142
Alignment gi|NP_001091521.1| alpha-actinin-4 [Bos taurus]. 448 e-126
Alignment gi|NP_001069625.1| alpha-actinin-3 [Bos taurus]. 437 e-123
Alignment gi|NP_001029807.1| alpha-actinin-2 [Bos taurus]. 429 e-120
Alignment gi|NP_001179205.1| spectrin beta chain, brain 1 [Bos taurus]. 244 9e-65
Alignment gi|XP_002691372.1| PREDICTED: spectrin, beta, non-erythrocytic ... 244 9e-65
Alignment gi|NP_001179839.1| spectrin beta chain, brain 3 [Bos taurus]. 239 4e-63
Alignment gi|XP_002695037.1| PREDICTED: spectrin, beta, non-erythrocytic ... 239 4e-63
Alignment gi|XP_002699440.1| PREDICTED: spectrin, beta, non-erythrocytic ... 238 8e-63
Alignment gi|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bo... 203 2e-52
>ref|NP_001030428.1| alpha-actinin-1 [Bos taurus].
Length = 892
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|NP_001091521.1| alpha-actinin-4 [Bos taurus].
Length = 911
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 30 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 89
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 90 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 149
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 150 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 209
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 210 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 264
>ref|NP_001069625.1| alpha-actinin-3 [Bos taurus].
Length = 901
Score = 437 bits (1125), Expect = e-123
Identities = 210/235 (89%), Positives = 224/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+YM+ EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLLE
Sbjct: 25 EYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLE 84
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL +P++GKMR HKI+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTI
Sbjct: 85 VISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 144
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVN+QNFH SWKDGL CALIHRHRP+L
Sbjct: 145 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL 204
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
IDY KLRKDDP+ NLNTAF+VAEKYLDIPKMLDAEDIV T +PDEKAIMTYVS F
Sbjct: 205 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 259
>ref|NP_001029807.1| alpha-actinin-2 [Bos taurus].
Length = 894
Score = 429 bits (1103), Expect = e-120
Identities = 206/238 (86%), Positives = 223/238 (93%)
Frame = +3
Query: 297 QTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLML 476
+ ++YM EE+WDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLML
Sbjct: 15 EDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLML 74
Query: 477 LLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMI 656
LLEVISGERL KP+RGKMR HKI+NVNKALD+IASKGVKLVSIGAEEIVDGNVKMTLGMI
Sbjct: 75 LLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMI 134
Query: 657 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHR 836
WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVNIQNFH SWKDGLG CALIHRHR
Sbjct: 135 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHR 194
Query: 837 PELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
P+LIDY KL KDDP+ N+N A ++AEK+LDIPKMLDAEDIV T +PDE+AIMTYVS F
Sbjct: 195 PDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCF 252
>ref|NP_001179205.1| spectrin beta chain, brain 1 [Bos taurus].
Length = 2363
Score = 244 bits (623), Expect = 9e-65
Identities = 122/222 (54%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ D RDG L+ LLEV+SGERL KP +G+MR+H
Sbjct: 53 EAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG+IWTIILRF IQDISV E+
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEK 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVNI NF SW+DG+ F ALIH+HRP+LID+ KL+K +
Sbjct: 173 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AE++L + K+LD EDI PDEK+I+TYV ++
Sbjct: 233 NLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTY 273
>ref|XP_002691372.1| PREDICTED: spectrin, beta, non-erythrocytic 1 [Bos taurus].
Length = 2363
Score = 244 bits (623), Expect = 9e-65
Identities = 122/222 (54%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ D RDG L+ LLEV+SGERL KP +G+MR+H
Sbjct: 53 EAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG+IWTIILRF IQDISV E+
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEK 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVNI NF SW+DG+ F ALIH+HRP+LID+ KL+K +
Sbjct: 173 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AE++L + K+LD EDI PDEK+I+TYV ++
Sbjct: 233 NLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTY 273
>ref|NP_001179839.1| spectrin beta chain, brain 3 [Bos taurus].
Length = 2564
Score = 239 bits (609), Expect = 4e-63
Identities = 122/222 (54%), Positives = 157/222 (70%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + G I ++ D RDG L LLEV+SGE+L +P RG+MR+H
Sbjct: 61 EAVQKKTFTKWVNSHLARVGCHIGDLYTDLRDGFVLTRLLEVLSGEQLPRPTRGRMRIHS 120
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVE-----ET 707
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG++WTIILRF IQ I +E ET
Sbjct: 121 LENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQVIKIETEDNRET 180
Query: 708 -SAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y VNIQNF SW+DGL F ALIHRHRP+L+D+ KL K +
Sbjct: 181 RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDFSKLTKSNANY 240
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF AE++L + ++LD ED V PDEK+I+TYV SF
Sbjct: 241 NLQRAFRTAEQHLGLARLLDPED-VNMEAPDEKSIITYVVSF 281
>ref|XP_002695037.1| PREDICTED: spectrin, beta, non-erythrocytic 4 [Bos taurus].
Length = 2564
Score = 239 bits (609), Expect = 4e-63
Identities = 122/222 (54%), Positives = 157/222 (70%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + G I ++ D RDG L LLEV+SGE+L +P RG+MR+H
Sbjct: 61 EAVQKKTFTKWVNSHLARVGCHIGDLYTDLRDGFVLTRLLEVLSGEQLPRPTRGRMRIHS 120
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVE-----ET 707
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG++WTIILRF IQ I +E ET
Sbjct: 121 LENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQVIKIETEDNRET 180
Query: 708 -SAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y VNIQNF SW+DGL F ALIHRHRP+L+D+ KL K +
Sbjct: 181 RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDFSKLTKSNANY 240
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF AE++L + ++LD ED V PDEK+I+TYV SF
Sbjct: 241 NLQRAFRTAEQHLGLARLLDPED-VNMEAPDEKSIITYVVSF 281
>ref|XP_002699440.1| PREDICTED: spectrin, beta, non-erythrocytic 2-like [Bos taurus].
Length = 1068
Score = 238 bits (606), Expect = 8e-63
Identities = 116/222 (52%), Positives = 161/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + ++ ++ D RDG L+ LLEV+SGE L KP +G+MR+H
Sbjct: 63 EAVQKKTFTKWVNSHLARVTCRVGDLYSDLRDGRNLLRLLEVLSGETLPKPTKGRMRIHC 122
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG++WTIILRF IQDISV E+
Sbjct: 123 LENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLVWTIILRFQIQDISVETEDNKEK 182
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVN+ NF SW+DGL F A++H+HRP+L+D+ L+K +
Sbjct: 183 KSAKDALLLWCQMKTAGYPNVNVNNFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHY 242
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AEK L + K+LD ED V +PDEK+I+TYV+++
Sbjct: 243 NLQNAFNLAEKELGLTKLLDPED-VNVDQPDEKSIITYVATY 283
>ref|NP_001137332.1| microtubule-actin cross-linking factor 1 [Bos taurus].
Length = 5422
Score = 203 bits (516), Expect = 2e-52
Identities = 113/238 (47%), Positives = 153/238 (64%), Gaps = 14/238 (5%)
Frame = +3
Query: 336 RDLLLDPAW----------EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+D +LDPA ++ Q+KTFT W N HL K I ++ ED RDG L+ LLE
Sbjct: 58 QDSVLDPAERAVVRVADERDRVQKKTFTKWANKHLMKVRKHINDLYEDLRDGHNLISLLE 117
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
V+SG +L + E+G+MR H++ NV ALDF+ + VKLV+I ++I DGN K+TLG+IWTI
Sbjct: 118 VLSGIKLPR-EKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTI 176
Query: 666 ILRFAIQDISVE----ETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRH 833
IL F I DI + + SAKE LLLW Q+ TA Y + NF W DG F ALIHR+
Sbjct: 177 ILHFQISDIYISGESGDMSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRY 236
Query: 834 RPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSS 1007
RP+L+D +++ NL AF+VAE+ L + ++LDAED V PDEK+++TYVSS
Sbjct: 237 RPDLVDMERVQIQSNRENLEQAFEVAER-LGVTRLLDAED-VDVPSPDEKSVITYVSS 292
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 34,548,858
Number of extensions: 936526
Number of successful extensions: 3492
Number of sequences better than 1.0e-05: 64
Number of HSP's gapped: 3397
Number of HSP's successfully gapped: 70
Length of query: 337
Length of database: 17,681,374
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,273,310
Effective search space: 3339954540
Effective search space used: 3339954540
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866971.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866962.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866953.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866940.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866931.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866918.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_853103.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866895.1| PREDICTED: similar to Alpha-actinin 1 (Alpha-ac... 501 e-142
Alignment gi|XP_866885.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
Alignment gi|XP_866874.1| PREDICTED: similar to actinin, alpha 1 isoform ... 501 e-142
>ref|XP_866971.1| PREDICTED: similar to actinin, alpha 1 isoform 10 [Canis familiaris].
Length = 887
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866962.1| PREDICTED: similar to actinin, alpha 1 isoform 9 [Canis familiaris].
Length = 927
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866953.1| PREDICTED: similar to actinin, alpha 1 isoform 8 [Canis familiaris].
Length = 921
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866940.1| PREDICTED: similar to actinin, alpha 1 isoform 7 [Canis familiaris].
Length = 923
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866931.1| PREDICTED: similar to actinin, alpha 1 isoform 6 [Canis familiaris].
Length = 917
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866918.1| PREDICTED: similar to actinin, alpha 1 isoform 5 [Canis familiaris].
Length = 915
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_853103.1| PREDICTED: similar to actinin, alpha 1 isoform 1 [Canis familiaris].
Length = 914
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866895.1| PREDICTED: similar to Alpha-actinin 1 (Alpha-actinin cytoskeletal
isoform) (Non-muscle alpha-actinin 1) (F-actin cross
linking protein) isoform 4 [Canis familiaris].
Length = 831
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866885.1| PREDICTED: similar to actinin, alpha 1 isoform 3 [Canis familiaris].
Length = 831
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_866874.1| PREDICTED: similar to actinin, alpha 1 isoform 2 [Canis familiaris].
Length = 892
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 36,031,635
Number of extensions: 955177
Number of successful extensions: 3864
Number of sequences better than 1.0e-05: 149
Number of HSP's gapped: 3644
Number of HSP's successfully gapped: 152
Length of query: 337
Length of database: 18,874,504
Length adjustment: 103
Effective length of query: 234
Effective length of database: 15,440,896
Effective search space: 3613169664
Effective search space used: 3613169664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001229990.1| alpha-actinin-1 [Sus scrofa]. 501 e-142
Alignment gi|XP_003127168.2| PREDICTED: alpha-actinin-4-like isoform 1 [S... 448 e-126
Alignment gi|XP_003355932.1| PREDICTED: alpha-actinin-4-like isoform 3 [S... 448 e-126
Alignment gi|XP_003355931.1| PREDICTED: alpha-actinin-4-like isoform 2 [S... 448 e-126
Alignment gi|XP_003355933.1| PREDICTED: alpha-actinin-4-like isoform 4 [S... 446 e-126
Alignment gi|XP_003122540.1| PREDICTED: alpha-actinin-3-like isoform 1 [S... 437 e-123
Alignment gi|XP_003122525.1| PREDICTED: alpha-actinin-3-like isoform 1 [S... 437 e-123
Alignment gi|NP_001230595.1| alpha-actinin-2 [Sus scrofa]. 429 e-120
Alignment gi|XP_003354869.1| PREDICTED: spectrin beta chain, brain 1 isof... 244 4e-65
Alignment gi|XP_003125192.2| PREDICTED: spectrin beta chain, brain 1 isof... 244 6e-65
>ref|NP_001229990.1| alpha-actinin-1 [Sus scrofa].
Length = 887
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|XP_003127168.2| PREDICTED: alpha-actinin-4-like isoform 1 [Sus scrofa].
Length = 933
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 30 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 89
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 90 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 149
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 150 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 209
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 210 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 264
>ref|XP_003355932.1| PREDICTED: alpha-actinin-4-like isoform 3 [Sus scrofa].
Length = 906
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 30 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 89
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 90 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 149
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 150 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 209
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 210 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 264
>ref|XP_003355931.1| PREDICTED: alpha-actinin-4-like isoform 2 [Sus scrofa].
Length = 884
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 3 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 62
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 63 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 122
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 123 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 182
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 183 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 237
>ref|XP_003355933.1| PREDICTED: alpha-actinin-4-like isoform 4 [Sus scrofa].
Length = 906
Score = 446 bits (1148), Expect = e-126
Identities = 218/235 (92%), Positives = 225/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 30 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 89
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 90 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 149
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 150 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 209
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIVGT RPDEKAIMTYVS F
Sbjct: 210 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVGTLRPDEKAIMTYVSCF 264
>ref|XP_003122540.1| PREDICTED: alpha-actinin-3-like isoform 1 [Sus scrofa].
Length = 902
Score = 437 bits (1125), Expect = e-123
Identities = 210/235 (89%), Positives = 224/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+YM+ EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLLE
Sbjct: 26 EYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLE 85
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL +P++GKMR HKI+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTI
Sbjct: 86 VISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 145
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVN+QNFH SWKDGL CALIHRHRP+L
Sbjct: 146 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL 205
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
IDY KLRKDDP+ NLNTAF+VAEKYLDIPKMLDAEDIV T +PDEKAIMTYVS F
Sbjct: 206 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 260
>ref|XP_003122525.1| PREDICTED: alpha-actinin-3-like isoform 1 [Sus scrofa].
Length = 902
Score = 437 bits (1125), Expect = e-123
Identities = 210/235 (89%), Positives = 224/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+YM+ EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLLE
Sbjct: 26 EYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLE 85
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL +P++GKMR HKI+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTI
Sbjct: 86 VISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 145
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVN+QNFH SWKDGL CALIHRHRP+L
Sbjct: 146 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL 205
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
IDY KLRKDDP+ NLNTAF+VAEKYLDIPKMLDAEDIV T +PDEKAIMTYVS F
Sbjct: 206 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 260
>ref|NP_001230595.1| alpha-actinin-2 [Sus scrofa].
Length = 894
Score = 429 bits (1103), Expect = e-120
Identities = 206/238 (86%), Positives = 223/238 (93%)
Frame = +3
Query: 297 QTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLML 476
+ ++YM EE+WDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLML
Sbjct: 15 EDDEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLML 74
Query: 477 LLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMI 656
LLEVISGERL KP+RGKMR HKI+NVNKALD+IASKGVKLVSIGAEEIVDGNVKMTLGMI
Sbjct: 75 LLEVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMI 134
Query: 657 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHR 836
WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVNIQNFH SWKDGLG CALIHRHR
Sbjct: 135 WTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHR 194
Query: 837 PELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
P+LIDY KL KDDP+ N+N A ++AEK+LDIPKMLDAEDIV T +PDE+AIMTYVS F
Sbjct: 195 PDLIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCF 252
>ref|XP_003354869.1| PREDICTED: spectrin beta chain, brain 1 isoform 2 [Sus scrofa].
Length = 2155
Score = 244 bits (624), Expect = 4e-65
Identities = 128/248 (51%), Positives = 171/248 (68%), Gaps = 6/248 (2%)
Frame = +3
Query: 285 YDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 464
Y Q +Y Q E + + L E Q+KTFT W NSHL + +I ++ D RDG
Sbjct: 17 YTGQVPYNYNQLEGRFKQ---LQDEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGR 73
Query: 465 KLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMT 644
L+ LLEV+SGERL KP +G+MR+H + NV+KAL F+ + V L ++G+ +IVDGN ++T
Sbjct: 74 MLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLT 133
Query: 645 LGMIWTIILRFAIQDISV------EETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGL 806
LG+IWTIILRF IQDISV E+ SAK+ LLLWCQ KTA Y NVNI NF SW+DG+
Sbjct: 134 LGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGM 193
Query: 807 GFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKA 986
F ALIH+HRP+LID+ KL+K + NL AF++AE++L + K+LD EDI PDEK+
Sbjct: 194 AFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKS 252
Query: 987 IMTYVSSF 1010
I+TYV ++
Sbjct: 253 IITYVVTY 260
>ref|XP_003125192.2| PREDICTED: spectrin beta chain, brain 1 isoform 1 [Sus scrofa].
Length = 2364
Score = 244 bits (623), Expect = 6e-65
Identities = 122/222 (54%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ D RDG L+ LLEV+SGERL KP +G+MR+H
Sbjct: 53 EAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG+IWTIILRF IQDISV E+
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEK 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVNI NF SW+DG+ F ALIH+HRP+LID+ KL+K +
Sbjct: 173 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AE++L + K+LD EDI PDEK+I+TYV ++
Sbjct: 233 NLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTY 273
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 22,445,600
Number of extensions: 625712
Number of successful extensions: 2263
Number of sequences better than 1.0e-05: 46
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 50
Length of query: 337
Length of database: 11,343,932
Length adjustment: 100
Effective length of query: 237
Effective length of database: 8,854,232
Effective search space: 2098452984
Effective search space used: 2098452984
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598917.1| alpha-actinin-1 [Mus musculus]. 498 e-141
Alignment gi|NP_068695.1| alpha-actinin-4 [Mus musculus]. 448 e-126
Alignment gi|NP_038484.1| alpha-actinin-3 [Mus musculus]. 437 e-123
Alignment gi|NP_150371.4| alpha-actinin-2 [Mus musculus]. 429 e-120
Alignment gi|NP_033286.2| spectrin beta chain, brain 1 isoform 2 [Mus mus... 244 6e-65
Alignment gi|NP_787030.2| spectrin beta chain, brain 1 isoform 1 [Mus mus... 244 8e-65
Alignment gi|NP_067262.1| spectrin beta chain, brain 2 [Mus musculus]. 242 3e-64
Alignment gi|NP_115999.2| spectrin beta 4 isoform sigma1 [Mus musculus]. 237 9e-63
Alignment gi|NP_038703.3| spectrin beta chain, erythrocyte [Mus musculus]. 236 2e-62
Alignment gi|NP_958796.2| plectin isoform 1a [Mus musculus]. 211 7e-55
>ref|NP_598917.1| alpha-actinin-1 [Mus musculus].
Length = 892
Score = 498 bits (1282), Expect = e-141
Identities = 243/245 (99%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAE++LDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAERFLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|NP_068695.1| alpha-actinin-4 [Mus musculus].
Length = 912
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 31 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 90
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 91 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 150
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 151 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 210
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 211 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 265
>ref|NP_038484.1| alpha-actinin-3 [Mus musculus].
Length = 900
Score = 437 bits (1125), Expect = e-123
Identities = 210/235 (89%), Positives = 224/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+YM+ EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLLE
Sbjct: 24 EYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLE 83
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL +P++GKMR HKI+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTI
Sbjct: 84 VISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 143
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVN+QNFH SWKDGL CALIHRHRP+L
Sbjct: 144 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL 203
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
IDY KLRKDDP+ NLNTAF+VAEKYLDIPKMLDAEDIV T +PDEKAIMTYVS F
Sbjct: 204 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 258
>ref|NP_150371.4| alpha-actinin-2 [Mus musculus].
Length = 894
Score = 429 bits (1102), Expect = e-120
Identities = 206/236 (87%), Positives = 222/236 (94%)
Frame = +3
Query: 303 NDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLL 482
++YM EE+WDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLL
Sbjct: 17 DEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLL 76
Query: 483 EVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWT 662
EVISGERL KP+RGKMR HKI+NVNKALD+IASKGVKLVSIGAEEIVDGNVKMTLGMIWT
Sbjct: 77 EVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWT 136
Query: 663 IILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPE 842
IILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVNIQNFH SWKDGLG CALIHRHRP+
Sbjct: 137 IILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPD 196
Query: 843 LIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
LIDY KL KDDP+ N+N A ++AEK+LDIPKMLDAEDIV T +PDE+AIMTYVS F
Sbjct: 197 LIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCF 252
>ref|NP_033286.2| spectrin beta chain, brain 1 isoform 2 [Mus musculus].
Length = 2154
Score = 244 bits (624), Expect = 6e-65
Identities = 128/248 (51%), Positives = 171/248 (68%), Gaps = 6/248 (2%)
Frame = +3
Query: 285 YDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 464
Y Q +Y Q E + + L E Q+KTFT W NSHL + +I ++ D RDG
Sbjct: 17 YTGQVPYNYNQLEGRFKQ---LQDEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGR 73
Query: 465 KLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMT 644
L+ LLEV+SGERL KP +G+MR+H + NV+KAL F+ + V L ++G+ +IVDGN ++T
Sbjct: 74 MLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLT 133
Query: 645 LGMIWTIILRFAIQDISV------EETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGL 806
LG+IWTIILRF IQDISV E+ SAK+ LLLWCQ KTA Y NVNI NF SW+DG+
Sbjct: 134 LGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGM 193
Query: 807 GFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKA 986
F ALIH+HRP+LID+ KL+K + NL AF++AE++L + K+LD EDI PDEK+
Sbjct: 194 AFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKS 252
Query: 987 IMTYVSSF 1010
I+TYV ++
Sbjct: 253 IITYVVTY 260
>ref|NP_787030.2| spectrin beta chain, brain 1 isoform 1 [Mus musculus].
Length = 2363
Score = 244 bits (623), Expect = 8e-65
Identities = 122/222 (54%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ D RDG L+ LLEV+SGERL KP +G+MR+H
Sbjct: 53 EAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG+IWTIILRF IQDISV E+
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEK 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVNI NF SW+DG+ F ALIH+HRP+LID+ KL+K +
Sbjct: 173 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AE++L + K+LD EDI PDEK+I+TYV ++
Sbjct: 233 NLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTY 273
>ref|NP_067262.1| spectrin beta chain, brain 2 [Mus musculus].
Length = 2388
Score = 242 bits (618), Expect = 3e-64
Identities = 123/258 (47%), Positives = 172/258 (66%), Gaps = 18/258 (6%)
Frame = +3
Query: 291 SQQTNDYMQPEEDWDRDLLLDPAWEKQ------------QRKTFTAWCNSHLRKAGTQIE 434
S N + P+ DWD D +E+ Q+KTFT W NSHL + ++
Sbjct: 20 SDINNRWDLPDSDWDNDSSSARLFERSRIKALADEREAVQKKTFTKWVNSHLARVTCRVG 79
Query: 435 NIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAE 614
++ D RDG L+ LLEV+SGE L KP +G+MR+H + NV+KAL F+ + V L ++G+
Sbjct: 80 DLYSDLRDGRNLLRLLEVLSGETLPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSH 139
Query: 615 EIVDGNVKMTLGMIWTIILRFAIQDISV------EETSAKEGLLLWCQRKTAPYKNVNIQ 776
+IVDGN ++TLG++WTIILRF IQDISV E+ SAK+ LLLWCQ KTA Y NVN+
Sbjct: 140 DIVDGNHRLTLGLVWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVH 199
Query: 777 NFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDI 956
NF SW+DGL F A++H+HRP+L+D+ L+K + NL AF++AEK L + K+LD ED
Sbjct: 200 NFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPED- 258
Query: 957 VGTARPDEKAIMTYVSSF 1010
V +PDEK+I+TYV+++
Sbjct: 259 VNVDQPDEKSIITYVATY 276
>ref|NP_115999.2| spectrin beta 4 isoform sigma1 [Mus musculus].
Length = 2561
Score = 237 bits (605), Expect = 9e-63
Identities = 122/222 (54%), Positives = 156/222 (70%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + G I ++ D RDG L LLEV+SGE+L +P RG+MR+H
Sbjct: 61 EAVQKKTFTKWVNSHLARVGCHIGDLYADLRDGFVLTRLLEVLSGEQLPRPTRGRMRIHS 120
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVE-----ET 707
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG++WTIILRF IQ I +E ET
Sbjct: 121 LENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQVIKIETEDNRET 180
Query: 708 -SAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y VNIQNF SW+DGL F ALIHRHRP+L+D KL K +
Sbjct: 181 RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDLSKLTKSNANY 240
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF AE++L + ++LD ED V PDEK+I+TYV SF
Sbjct: 241 NLQRAFRTAEQHLGLARLLDPED-VNMEAPDEKSIITYVVSF 281
>ref|NP_038703.3| spectrin beta chain, erythrocyte [Mus musculus].
Length = 2329
Score = 236 bits (603), Expect = 2e-62
Identities = 121/222 (54%), Positives = 157/222 (70%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ +D RDG L+ LLEV+SGE L +P +GKMR+H
Sbjct: 53 EVVQKKTFTKWVNSHLARVSCRISDLYKDLRDGRMLIKLLEVLSGEMLPRPTKGKMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++ LG+IWTIILRF IQDI V E
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDIVVQTQEGRET 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y +VN+ NF SWKDGL F ALIH+HRP+LID+ KL+ +
Sbjct: 173 RSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRPDLIDFDKLKDSNARH 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AFDVAE+ L I +LD ED+ T PDEK+I+TYV +F
Sbjct: 233 NLEHAFDVAERQLGIIPLLDPEDVF-TENPDEKSIITYVVAF 273
>ref|NP_958796.2| plectin isoform 1a [Mus musculus].
Length = 4543
Score = 211 bits (537), Expect = 7e-55
Identities = 112/219 (51%), Positives = 149/219 (68%), Gaps = 4/219 (1%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
++ Q+KTFT W N HL KA I ++ ED RDG L+ LLEV+SG+ L + E+G+MR HK
Sbjct: 41 DRVQKKTFTKWVNKHLIKAQRHISDLYEDLRDGHNLISLLEVLSGDSLPR-EKGRMRFHK 99
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV----EETS 710
+ NV ALD++ + VKLV+I ++I DGN K+TLG+IWTIIL F I DI V E+ +
Sbjct: 100 LQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVSGQSEDMT 159
Query: 711 AKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNL 890
AKE LLLW QR Y+ + NF SW+DG F A+IHRH+P LID K+ + L NL
Sbjct: 160 AKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAIIHRHKPMLIDMNKVYRQTNLENL 219
Query: 891 NTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSS 1007
+ AF VAE+ L + ++LD ED V +PDEK+I+TYVSS
Sbjct: 220 DQAFSVAERDLGVTRLLDPED-VDVPQPDEKSIITYVSS 257
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 29,852,340
Number of extensions: 775151
Number of successful extensions: 2944
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 2826
Number of HSP's successfully gapped: 70
Length of query: 337
Length of database: 15,617,559
Length adjustment: 102
Effective length of query: 235
Effective length of database: 12,553,887
Effective search space: 2950163445
Effective search space used: 2950163445
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001123477.1| alpha-actinin-1 isoform c [Homo sapiens]. 501 e-142
Alignment gi|NP_001123476.1| alpha-actinin-1 isoform a [Homo sapiens]. 501 e-142
Alignment gi|NP_001093.1| alpha-actinin-1 isoform b [Homo sapiens]. 501 e-142
Alignment gi|NP_004915.2| alpha-actinin-4 [Homo sapiens]. 448 e-126
Alignment gi|NP_001095.1| alpha-actinin-3 [Homo sapiens]. 437 e-123
Alignment gi|NP_001094.1| alpha-actinin-2 [Homo sapiens]. 429 e-120
Alignment gi|NP_842565.2| spectrin beta chain, brain 1 isoform 2 [Homo sa... 244 7e-65
Alignment gi|NP_003119.2| spectrin beta chain, brain 1 isoform 1 [Homo sa... 244 9e-65
Alignment gi|NP_008877.1| spectrin beta chain, brain 2 [Homo sapiens]. 241 6e-64
Alignment gi|NP_066022.2| spectrin beta chain, brain 3 isoform sigma1 [Ho... 238 5e-63
>ref|NP_001123477.1| alpha-actinin-1 isoform c [Homo sapiens].
Length = 887
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|NP_001123476.1| alpha-actinin-1 isoform a [Homo sapiens].
Length = 914
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|NP_001093.1| alpha-actinin-1 isoform b [Homo sapiens].
Length = 892
Score = 501 bits (1289), Expect = e-142
Identities = 245/245 (100%), Positives = 245/245 (100%)
Frame = +3
Query: 276 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 455
MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR
Sbjct: 1 MDHYDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR 60
Query: 456 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 635
DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV
Sbjct: 61 DGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNV 120
Query: 636 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 815
KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC
Sbjct: 121 KMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFC 180
Query: 816 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 995
ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT
Sbjct: 181 ALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMT 240
Query: 996 YVSSF 1010
YVSSF
Sbjct: 241 YVSSF 245
>ref|NP_004915.2| alpha-actinin-4 [Homo sapiens].
Length = 911
Score = 448 bits (1152), Expect = e-126
Identities = 219/235 (93%), Positives = 226/235 (96%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
DYM E+DWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENI+EDFRDGLKLMLLLE
Sbjct: 30 DYMAQEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIDEDFRDGLKLMLLLE 89
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL KPERGKMRVHKI+NVNKALDFIASKGVKLVSIGAEEIVDGN KMTLGMIWTI
Sbjct: 90 VISGERLPKPERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTI 149
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVN+QNFHISWKDGL F ALIHRHRPEL
Sbjct: 150 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRPEL 209
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
I+Y KLRKDDP+TNLN AF+VAEKYLDIPKMLDAEDIV TARPDEKAIMTYVSSF
Sbjct: 210 IEYDKLRKDDPVTNLNNAFEVAEKYLDIPKMLDAEDIVNTARPDEKAIMTYVSSF 264
>ref|NP_001095.1| alpha-actinin-3 [Homo sapiens].
Length = 901
Score = 437 bits (1125), Expect = e-123
Identities = 210/235 (89%), Positives = 224/235 (95%)
Frame = +3
Query: 306 DYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLE 485
+YM+ EEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLLE
Sbjct: 25 EYMEQEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLLE 84
Query: 486 VISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTI 665
VISGERL +P++GKMR HKI+NVNKALDFIASKGVKLVSIGAEEIVDGN+KMTLGMIWTI
Sbjct: 85 VISGERLPRPDKGKMRFHKIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTI 144
Query: 666 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPEL 845
ILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVN+QNFH SWKDGL CALIHRHRP+L
Sbjct: 145 ILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRPDL 204
Query: 846 IDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
IDY KLRKDDP+ NLNTAF+VAEKYLDIPKMLDAEDIV T +PDEKAIMTYVS F
Sbjct: 205 IDYAKLRKDDPIGNLNTAFEVAEKYLDIPKMLDAEDIVNTPKPDEKAIMTYVSCF 259
>ref|NP_001094.1| alpha-actinin-2 [Homo sapiens].
Length = 894
Score = 429 bits (1102), Expect = e-120
Identities = 206/236 (87%), Positives = 222/236 (94%)
Frame = +3
Query: 303 NDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLL 482
++YM EE+WDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFR+GLKLMLLL
Sbjct: 17 DEYMIQEEEWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRNGLKLMLLL 76
Query: 483 EVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWT 662
EVISGERL KP+RGKMR HKI+NVNKALD+IASKGVKLVSIGAEEIVDGNVKMTLGMIWT
Sbjct: 77 EVISGERLPKPDRGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWT 136
Query: 663 IILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPE 842
IILRFAIQDISVEETSAKEGLLLWCQRKTAPY+NVNIQNFH SWKDGLG CALIHRHRP+
Sbjct: 137 IILRFAIQDISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRPD 196
Query: 843 LIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
LIDY KL KDDP+ N+N A ++AEK+LDIPKMLDAEDIV T +PDE+AIMTYVS F
Sbjct: 197 LIDYSKLNKDDPIGNINLAMEIAEKHLDIPKMLDAEDIVNTPKPDERAIMTYVSCF 252
>ref|NP_842565.2| spectrin beta chain, brain 1 isoform 2 [Homo sapiens].
Length = 2155
Score = 244 bits (624), Expect = 7e-65
Identities = 128/248 (51%), Positives = 171/248 (68%), Gaps = 6/248 (2%)
Frame = +3
Query: 285 YDSQQTNDYMQPEEDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGL 464
Y Q +Y Q E + + L E Q+KTFT W NSHL + +I ++ D RDG
Sbjct: 17 YTGQVPYNYNQLEGRFKQ---LQDEREAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGR 73
Query: 465 KLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMT 644
L+ LLEV+SGERL KP +G+MR+H + NV+KAL F+ + V L ++G+ +IVDGN ++T
Sbjct: 74 MLIKLLEVLSGERLPKPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLT 133
Query: 645 LGMIWTIILRFAIQDISV------EETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGL 806
LG+IWTIILRF IQDISV E+ SAK+ LLLWCQ KTA Y NVNI NF SW+DG+
Sbjct: 134 LGLIWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGM 193
Query: 807 GFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKA 986
F ALIH+HRP+LID+ KL+K + NL AF++AE++L + K+LD EDI PDEK+
Sbjct: 194 AFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKS 252
Query: 987 IMTYVSSF 1010
I+TYV ++
Sbjct: 253 IITYVVTY 260
>ref|NP_003119.2| spectrin beta chain, brain 1 isoform 1 [Homo sapiens].
Length = 2364
Score = 244 bits (623), Expect = 9e-65
Identities = 122/222 (54%), Positives = 162/222 (72%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + +I ++ D RDG L+ LLEV+SGERL KP +G+MR+H
Sbjct: 53 EAVQKKTFTKWVNSHLARVSCRITDLYTDLRDGRMLIKLLEVLSGERLPKPTKGRMRIHC 112
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISV------EE 704
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG+IWTIILRF IQDISV E+
Sbjct: 113 LENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQDISVETEDNKEK 172
Query: 705 TSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y NVNI NF SW+DG+ F ALIH+HRP+LID+ KL+K +
Sbjct: 173 KSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHY 232
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF++AE++L + K+LD EDI PDEK+I+TYV ++
Sbjct: 233 NLQNAFNLAEQHLGLTKLLDPEDI-SVDHPDEKSIITYVVTY 273
>ref|NP_008877.1| spectrin beta chain, brain 2 [Homo sapiens].
Length = 2390
Score = 241 bits (616), Expect = 6e-64
Identities = 123/258 (47%), Positives = 172/258 (66%), Gaps = 18/258 (6%)
Frame = +3
Query: 291 SQQTNDYMQPEEDWDRDLLLDPAWEKQ------------QRKTFTAWCNSHLRKAGTQIE 434
S N + P+ DWD D +E+ Q+KTFT W NSHL + ++
Sbjct: 20 SDINNRWDLPDSDWDNDSSSARLFERSRIKALADEREAVQKKTFTKWVNSHLARVTCRVG 79
Query: 435 NIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAE 614
++ D RDG L+ LLEV+SGE L KP +G+MR+H + NV+KAL F+ + V L ++G+
Sbjct: 80 DLYSDLRDGRNLLRLLEVLSGEILPKPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSH 139
Query: 615 EIVDGNVKMTLGMIWTIILRFAIQDISV------EETSAKEGLLLWCQRKTAPYKNVNIQ 776
+IVDGN ++TLG++WTIILRF IQDISV E+ SAK+ LLLWCQ KTA Y NVN+
Sbjct: 140 DIVDGNHRLTLGLVWTIILRFQIQDISVETEDNKEKKSAKDALLLWCQMKTAGYPNVNVH 199
Query: 777 NFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLTNLNTAFDVAEKYLDIPKMLDAEDI 956
NF SW+DGL F A++H+HRP+L+D+ L+K + NL AF++AEK L + K+LD ED
Sbjct: 200 NFTTSWRDGLAFNAIVHKHRPDLLDFESLKKCNAHYNLQNAFNLAEKELGLTKLLDPED- 258
Query: 957 VGTARPDEKAIMTYVSSF 1010
V +PDEK+I+TYV+++
Sbjct: 259 VNVDQPDEKSIITYVATY 276
>ref|NP_066022.2| spectrin beta chain, brain 3 isoform sigma1 [Homo sapiens].
Length = 2564
Score = 238 bits (608), Expect = 5e-63
Identities = 122/222 (54%), Positives = 157/222 (70%), Gaps = 6/222 (2%)
Frame = +3
Query: 363 EKQQRKTFTAWCNSHLRKAGTQIENIEEDFRDGLKLMLLLEVISGERLAKPERGKMRVHK 542
E Q+KTFT W NSHL + G I ++ D RDG L LLEV+SGE+L +P RG+MR+H
Sbjct: 60 EAVQKKTFTKWVNSHLARVGCHIGDLYVDLRDGFVLTRLLEVLSGEQLPRPTRGRMRIHS 119
Query: 543 ISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQDISVE-----ET 707
+ NV+KAL F+ + V L ++G+ +IVDGN ++TLG++WTIILRF IQ I +E ET
Sbjct: 120 LENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQVIKIETEDNRET 179
Query: 708 -SAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRPELIDYGKLRKDDPLT 884
SAK+ LLLWCQ KTA Y VNIQNF SW+DGL F ALIHRHRP+L+D+ KL K +
Sbjct: 180 RSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRPDLVDFSKLTKSNANY 239
Query: 885 NLNTAFDVAEKYLDIPKMLDAEDIVGTARPDEKAIMTYVSSF 1010
NL AF AE++L + ++LD ED V PDEK+I+TYV SF
Sbjct: 240 NLQRAFRTAEQHLGLARLLDPED-VNMEAPDEKSIITYVVSF 280
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 35,327,434
Number of extensions: 935082
Number of successful extensions: 3424
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 3302
Number of HSP's successfully gapped: 84
Length of query: 337
Length of database: 18,297,164
Length adjustment: 103
Effective length of query: 234
Effective length of database: 14,901,872
Effective search space: 3487038048
Effective search space used: 3487038048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008787
(1012 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr07 178 4e-42
Sscrofa_Chr02 127 1e-26
Sscrofa_Chr06 121 8e-25
Sscrofa_Chr14 105 5e-20
>Sscrofa_Chr07
|| Length = 134764511
Score = 178 bits (90), Expect = 4e-42
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 701 agagacttcggccaaggaaggactgctcttgtggtgtcagagaaagacagccccttacaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98877970 agagacttcggccaaggaaggactgctcttgtggtgtcagagaaagacagccccttacaa 98878029
Query: 761 gaatgtcaatatccagaacttccacataag 790
||||||||||||||||||||||||||||||
Sbjct: 98878030 gaatgtcaatatccagaacttccacataag 98878059
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 868 aggatgacccactgacaaatctgaacacggccttcgatgtggcagagaagtacctggaca 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98882560 aggatgacccactgacaaatctgaacacggccttcgatgtggcagagaagtacctggaca 98882619
Query: 928 tcccgaagatgctggatgcggaag 951
||||||||||||||||||||||||
Sbjct: 98882620 tcccgaagatgctggatgcggaag 98882643
Score = 163 bits (82), Expect = 2e-37
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 789 agctggaaggacggcctgggcttctgtgccttgatccaccgacaccggcctgagctgatt 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98878588 agctggaaggacggcctgggcttctgtgccttgatccaccgacaccggcctgagctgatt 98878647
Query: 849 gactatgggaagctgcggaagg 870
||||||||||||||||||||||
Sbjct: 98878648 gactatgggaagctgcggaagg 98878669
Score = 125 bits (63), Expect = 5e-26
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 950 agacatcgtcggaactgcccgtcctgatgagaaagctatcatgacttatgtatccagctt 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98884070 agacatcgtcggaactgcccgtcctgatgagaaagctatcatgacttatgtatccagctt 98884129
Query: 1010 cta 1012
|||
Sbjct: 98884130 cta 98884132
>Sscrofa_Chr02
|| Length = 162569375
Score = 127 bits (64), Expect = 1e-26
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 627 gggaacgtgaaaatgaccctgggcatgatctggaccatcatcctccgctttgccatccag 686
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4830993 gggaacctgaagatgaccctgggcatgatctggaccatcatcctccgcttcgccatccag 4831052
Query: 687 gacatctccgtggaag 702
||||||||||||||||
Sbjct: 4831053 gacatctccgtggaag 4831068
Score = 127 bits (64), Expect = 1e-26
Identities = 73/76 (96%)
Strand = Plus / Minus
Query: 627 gggaacgtgaaaatgaccctgggcatgatctggaccatcatcctccgctttgccatccag 686
|||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4944963 gggaacctgaagatgaccctgggcatgatctggaccatcatcctccgcttcgccatccag 4944904
Query: 687 gacatctccgtggaag 702
||||||||||||||||
Sbjct: 4944903 gacatctccgtggaag 4944888
Score = 105 bits (53), Expect = 5e-20
Identities = 104/121 (85%)
Strand = Plus / Plus
Query: 379 agacattcacagcatggtgcaactcccacctccggaaggcaggcacgcagatcgagaaca 438
|||| ||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||
Sbjct: 4830268 agaccttcactgcctggtgcaactcgcacctgcgcaaggctggcacccagatcgagaaca 4830327
Query: 439 tcgaggaggacttccgggacggcctgaagctgatgctgctgctggaggtcatctcaggtg 498
|||||||||| ||||| | ||||| || || |||||||| ||||||||||| |||||||
Sbjct: 4830328 tcgaggaggatttccgcaatggcctcaaactcatgctgctcctggaggtcatttcaggtg 4830387
Query: 499 a 499
|
Sbjct: 4830388 a 4830388
Score = 105 bits (53), Expect = 5e-20
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 379 agacattcacagcatggtgcaactcccacctccggaaggcaggcacgcagatcgagaaca 438
|||| ||||| || ||||||||||| ||||| || ||||| ||||| |||||||||||||
Sbjct: 4945688 agaccttcactgcctggtgcaactcgcacctgcgcaaggctggcacccagatcgagaaca 4945629
Query: 439 tcgaggaggacttccgggacggcctgaagctgatgctgctgctggaggtcatctcaggtg 498
|||||||||| ||||| | ||||| || || |||||||| ||||||||||| |||||||
Sbjct: 4945628 tcgaggaggatttccgcaatggcctcaaactcatgctgctcctggaggtcatttcaggtg 4945569
Query: 499 a 499
|
Sbjct: 4945568 a 4945568
Score = 81.8 bits (41), Expect = 7e-13
Identities = 80/93 (86%)
Strand = Plus / Plus
Query: 512 gccggagagaggcaagatgagagtgcacaagatttccaacgtcaacaaggccttggactt 571
|||||| | |||||||||| | | ||||| ||| |||| |||||||||||| | |||||
Sbjct: 4830578 gccggacaaaggcaagatgcgtttccacaaaattgccaatgtcaacaaggccctcgactt 4830637
Query: 572 catagccagcaagggcgtcaagctggtgtccat 604
||| |||||||||||||| ||||||||||||||
Sbjct: 4830638 cattgccagcaagggcgtgaagctggtgtccat 4830670
Score = 81.8 bits (41), Expect = 7e-13
Identities = 80/93 (86%)
Strand = Plus / Minus
Query: 512 gccggagagaggcaagatgagagtgcacaagatttccaacgtcaacaaggccttggactt 571
|||||| | |||||||||| | | ||||| ||| |||| |||||||||||| | |||||
Sbjct: 4945378 gccggacaaaggcaagatgcgtttccacaaaattgccaatgtcaacaaggccctcgactt 4945319
Query: 572 catagccagcaagggcgtcaagctggtgtccat 604
||| |||||||||||||| ||||||||||||||
Sbjct: 4945318 cattgccagcaagggcgtgaagctggtgtccat 4945286
Score = 79.8 bits (40), Expect = 3e-12
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 888 ctgaacacggccttcgatgtggcagagaagtacctggacatcccgaagatgctggatgcg 947
|||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 4831863 ctgaacaccgcctttgaggtggcagaaaagtacctggacatccccaagatgctggatgca 4831922
Query: 948 gaag 951
||||
Sbjct: 4831923 gaag 4831926
Score = 79.8 bits (40), Expect = 3e-12
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 888 ctgaacacggccttcgatgtggcagagaagtacctggacatcccgaagatgctggatgcg 947
|||||||| ||||| || |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 4944093 ctgaacaccgcctttgaggtggcagaaaagtacctggacatccccaagatgctggatgca 4944034
Query: 948 gaag 951
||||
Sbjct: 4944033 gaag 4944030
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 324 gaggactgggatcgagatctgctcctggacccagcctgggagaagcagcagag 376
||||||||||| || || ||||| |||||||| ||||||||||||||||||||
Sbjct: 4826414 gaggactgggaccgcgacctgctgctggacccggcctgggagaagcagcagag 4826466
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 324 gaggactgggatcgagatctgctcctggacccagcctgggagaagcagcagag 376
||||||||||| || || ||||| |||||||| ||||||||||||||||||||
Sbjct: 4949543 gaggactgggaccgcgacctgctgctggacccggcctgggagaagcagcagag 4949491
>Sscrofa_Chr06
|| Length = 157765593
Score = 121 bits (61), Expect = 8e-25
Identities = 106/121 (87%)
Strand = Plus / Plus
Query: 379 agacattcacagcatggtgcaactcccacctccggaaggcaggcacgcagatcgagaaca 438
|||| |||||||| ||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct: 43099517 agaccttcacagcctggtgcaactcccacctgcgcaaggccggcacacagatcgagaaca 43099576
Query: 439 tcgaggaggacttccgggacggcctgaagctgatgctgctgctggaggtcatctcaggtg 498
|||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| || ||||
Sbjct: 43099577 tcgacgaggacttccgagacgggctcaagctcatgcttctcctggaggtcatttccggtg 43099636
Query: 499 a 499
|
Sbjct: 43099637 a 43099637
Score = 91.7 bits (46), Expect = 7e-16
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 639 atgaccctgggcatgatctggaccatcatcctccgctttgccatccaggacatctccgtg 698
||||| ||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 43103293 atgacgctgggcatgatctggaccatcatcctcaggttcgccatccaggacatctccgtg 43103352
Query: 699 ga 700
||
Sbjct: 43103353 ga 43103354
Score = 75.8 bits (38), Expect = 4e-11
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 888 ctgaacacggccttcgatgtggcagagaagtacctggacatcccgaagatgctggatgcg 947
||||||| |||||||| ||||| ||||||||||| |||||||| |||||||||||||||
Sbjct: 43106206 ctgaacaatgccttcgaagtggctgagaagtacctagacatccccaagatgctggatgcg 43106265
Query: 948 ga 949
||
Sbjct: 43106266 ga 43106267
Score = 61.9 bits (31), Expect = 6e-07
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 522 ggcaagatgagagtgcacaagatttccaacgtcaacaaggccttggacttcatagccagc 581
||||||||||| ||||| ||||| ||| || |||||||| |||||||||| ||||||
Sbjct: 43099826 ggcaagatgagggtgcataagatcaacaatgtgaacaaggcactggacttcatcgccagc 43099885
Query: 582 aagggcgtcaagctggtgtccat 604
|| || ||||||||||| |||||
Sbjct: 43099886 aaaggagtcaagctggtctccat 43099908
>Sscrofa_Chr14
|| Length = 153851969
Score = 105 bits (53), Expect = 5e-20
Identities = 104/121 (85%)
Strand = Plus / Minus
Query: 379 agacattcacagcatggtgcaactcccacctccggaaggcaggcacgcagatcgagaaca 438
|||| ||||| || ||||| |||||||||||| |||| || ||||| |||||||||||||
Sbjct: 58691137 agaccttcaccgcctggtgtaactcccacctcaggaaagctggcactcagatcgagaaca 58691078
Query: 439 tcgaggaggacttccgggacggcctgaagctgatgctgctgctggaggtcatctcaggtg 498
||||||| |||||||| | ||||| ||||| |||||||| |||| |||||||||||||
Sbjct: 58691077 tcgaggaagacttccgaaatggccttaagctcatgctgcttttggaagtcatctcaggtg 58691018
Query: 499 a 499
|
Sbjct: 58691017 a 58691017
Score = 87.7 bits (44), Expect = 1e-14
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 624 gatgggaacgtgaaaatgaccctgggcatgatctggaccatcatcctccgctttgccatc 683
||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||| ||
Sbjct: 58689259 gatggcaacgtgaaaatgacgctgggcatgatctggaccattatcctgcgctttgctatt 58689200
Query: 684 caggacat 691
||||||||
Sbjct: 58689199 caggacat 58689192
Score = 71.9 bits (36), Expect = 7e-10
Identities = 51/56 (91%)
Strand = Plus / Minus
Query: 549 aacgtcaacaaggccttggacttcatagccagcaagggcgtcaagctggtgtccat 604
||||||||||| |||||||||| |||||||||||| ||||| || |||||||||||
Sbjct: 58690093 aacgtcaacaaagccttggactacatagccagcaaaggcgtgaaactggtgtccat 58690038
Score = 65.9 bits (33), Expect = 4e-08
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 324 gaggactgggatcgagatctgctcctggacccagcctgggagaagcagcagag 376
||||| ||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct: 58717031 gaggagtgggaccgcgacctgctcctggacccggcctgggagaagcagcagag 58716979
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 24,447,208
Number of extensions: 221
Number of successful extensions: 221
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 22
Length of query: 1012
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 991
Effective length of database: 2,808,413,156
Effective search space: 2783137437596
Effective search space used: 2783137437596
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)