Search to RefSeqBP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: RefSeq49_BP.fasta
33,088 sequences; 17,681,374 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029673.1| grpE protein homolog 1, mitochondrial precur... 335 3e-92
Alignment gi|NP_001069142.1| grpE protein homolog 2, mitochondrial precur... 153 2e-37
Alignment gi|NP_001071518.1| GrpE-like 2, mitochondrial-like [Bos taurus]. 144 8e-35
>ref|NP_001029673.1| grpE protein homolog 1, mitochondrial precursor [Bos taurus].
Length = 217
Score = 335 bits (859), Expect = 3e-92
Identities = 172/217 (79%), Positives = 177/217 (81%)
Frame = +3
Query: 39 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 218
MAA CVR+ CTA KQKNNGQNLEEDAGQNEQKTDLPSTEKT
Sbjct: 1 MAARCVRLARGSLPAFALSLRSSPRLLCTAAKQKNNGQNLEEDAGQNEQKTDLPSTEKTL 60
Query: 219 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 398
MEKYKRALADTEN RQRSQKLVEEAKLYGIQGFCKDLLEVADILEK
Sbjct: 61 MEEKVKLEEQLKETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 120
Query: 399 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 578
ATQ VP+EEIRDDNPHLK+LYEGL+MTE QIQKVFTKHGLLRL+PLGAKFDPYEHEALFH
Sbjct: 121 ATQCVPQEEIRDDNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLNPLGAKFDPYEHEALFH 180
Query: 579 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 689
TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVK A
Sbjct: 181 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKGA 217
>ref|NP_001069142.1| grpE protein homolog 2, mitochondrial precursor [Bos taurus].
Length = 224
Score = 153 bits (387), Expect = 2e-37
Identities = 75/143 (52%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+RA+AD+EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 78 RYQRAVADSENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEETEPADQKL 137
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ GL + EA+++ VF KHGL ++ P+G K+DP+EHE + H P G +PGTVA V
Sbjct: 138 TLEKIFRGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVAFV 197
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 198 RQDGYKLHGRTIRLAQVEVAVES 220
>ref|NP_001071518.1| GrpE-like 2, mitochondrial-like [Bos taurus].
Length = 194
Score = 144 bits (364), Expect = 8e-35
Identities = 72/143 (50%), Positives = 102/143 (71%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+ A+ D+EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 48 RYQTAVGDSENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEETEPADQKL 107
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ GL + EA+++ VF KH L ++ P+G K DP+EHE + H P G +PGTVA V
Sbjct: 108 TLEKIFRGLSLLEAKLKSVFAKHVLEKMTPIGDKHDPHEHELICHVPAGVGVQPGTVAFV 167
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 168 RQDGYKLHGRTIRLAQVEVAVES 190
Database: RefSeq49_BP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 17,681,374
Number of sequences in database: 33,088
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33088
Number of Hits to DB: 25,638,249
Number of extensions: 601934
Number of successful extensions: 2174
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2170
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,681,374
Length adjustment: 101
Effective length of query: 194
Effective length of database: 14,339,486
Effective search space: 2781860284
Effective search space used: 2781860284
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: RefSeq49_CP.fasta
33,336 sequences; 18,874,504 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545902.2| PREDICTED: similar to GrpE protein homolog 1, m... 322 4e-88
Alignment gi|XP_546313.2| PREDICTED: similar to GrpE protein homolog 2, m... 153 2e-37
>ref|XP_545902.2| PREDICTED: similar to GrpE protein homolog 1, mitochondrial
precursor (Mt-GrpE#1) (HMGE) [Canis familiaris].
Length = 294
Score = 322 bits (824), Expect = 4e-88
Identities = 161/190 (84%), Positives = 170/190 (89%)
Frame = +3
Query: 120 CTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTXXXXXXXXXXXXXXAMEKYKRALADTEN 299
CTATKQKN G+NLEED GQNEQKTD PSTEKT +EKYKRALADTEN
Sbjct: 106 CTATKQKN-GRNLEEDVGQNEQKTDTPSTEKTLMDEKVKLEEQLKETVEKYKRALADTEN 164
Query: 300 FRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEIRDDNPHLKNLYEGLLMT 479
RQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEE++DDNPHLKNLYEGL+MT
Sbjct: 165 LRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKEEVKDDNPHLKNLYEGLVMT 224
Query: 480 EAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLR 659
E QIQKVFTKHGLLRL+P+GA+FDPYEHEALFHTPVEGKEPGTVALV+KVGYKLHGRTLR
Sbjct: 225 EVQIQKVFTKHGLLRLNPVGARFDPYEHEALFHTPVEGKEPGTVALVSKVGYKLHGRTLR 284
Query: 660 PALVGVVKEA 689
PALVGVVKEA
Sbjct: 285 PALVGVVKEA 294
>ref|XP_546313.2| PREDICTED: similar to GrpE protein homolog 2, mitochondrial
precursor (Mt-GrpE#2) [Canis familiaris].
Length = 281
Score = 153 bits (386), Expect = 2e-37
Identities = 76/143 (53%), Positives = 106/143 (74%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 135 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTEYISEETEPGDQKL 194
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ GL + EA+++ VF KHGL ++ P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 195 TLEKIFRGLSLLEAKLKSVFAKHGLEKMTPIGDKYDPHEHELICHVPAGVGVQPGTVALV 254
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 255 RQDGYKLHGRTIRLARVEVAVES 277
Database: RefSeq49_CP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,874,504
Number of sequences in database: 33,336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33336
Number of Hits to DB: 26,792,635
Number of extensions: 623424
Number of successful extensions: 2212
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2208
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 18,874,504
Length adjustment: 102
Effective length of query: 193
Effective length of database: 15,474,232
Effective search space: 2986526776
Effective search space used: 2986526776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: RefSeq49_SP.fasta
24,897 sequences; 11,343,932 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003356895.1| PREDICTED: grpE protein homolog 1, mitochond... 379 e-106
Alignment gi|XP_003124132.1| PREDICTED: grpE protein homolog 2, mitochond... 147 8e-36
Alignment gi|XP_003124131.1| PREDICTED: grpE protein homolog 2, mitochond... 147 8e-36
>ref|XP_003356895.1| PREDICTED: grpE protein homolog 1, mitochondrial-like [Sus scrofa].
Length = 230
Score = 379 bits (974), Expect = e-106
Identities = 196/229 (85%), Positives = 196/229 (85%)
Frame = +3
Query: 3 PVARAGLTAAAVMAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNE 182
PVARAGLTAAAVMAAPCVRV CTATKQKNNGQNLEEDAGQNE
Sbjct: 2 PVARAGLTAAAVMAAPCVRVARRSLSALALSLRPSPRLLCTATKQKNNGQNLEEDAGQNE 61
Query: 183 QKTDLPSTEKTXXXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFC 362
QKTDLPSTEKT AMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFC
Sbjct: 62 QKTDLPSTEKTLMEEKVKLEEQLKEAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFC 121
Query: 363 KDLLEVADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGA 542
KDLLEVADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGA
Sbjct: 122 KDLLEVADILEKATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGA 181
Query: 543 KFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 689
KFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA
Sbjct: 182 KFDPYEHEALFHTPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 230
>ref|XP_003124132.1| PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 2
[Sus scrofa].
Length = 210
Score = 147 bits (371), Expect = 8e-36
Identities = 74/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVAD+LEK +E E D
Sbjct: 64 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADLLEKTAGCASEEAEPGDQKL 123
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ L + EA+++ VF KHGL ++ PLGA++DP+EHE + H P G +PGTVALV
Sbjct: 124 VLEKIFRALSLLEAKLKSVFAKHGLEKMTPLGAQYDPHEHELICHVPAGAGVQPGTVALV 183
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 184 RQDGYKLHGRTIRLARVEVAVES 206
>ref|XP_003124131.1| PREDICTED: grpE protein homolog 2, mitochondrial-like isoform 1
[Sus scrofa].
Length = 220
Score = 147 bits (371), Expect = 8e-36
Identities = 74/143 (51%), Positives = 103/143 (72%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVAD+LEK +E E D
Sbjct: 74 RYQRAVADGENIRRRTQRCVEDAKIFGIQSFCKDLVEVADLLEKTAGCASEEAEPGDQKL 133
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ L + EA+++ VF KHGL ++ PLGA++DP+EHE + H P G +PGTVALV
Sbjct: 134 VLEKIFRALSLLEAKLKSVFAKHGLEKMTPLGAQYDPHEHELICHVPAGAGVQPGTVALV 193
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 194 RQDGYKLHGRTIRLARVEVAVES 216
Database: RefSeq49_SP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 11,343,932
Number of sequences in database: 24,897
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24897
Number of Hits to DB: 16,541,179
Number of extensions: 389391
Number of successful extensions: 1423
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1417
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 11,343,932
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,904,026
Effective search space: 1754093122
Effective search space used: 1754093122
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)
Search to RefSeqMP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: RefSeq49_MP.fasta
30,036 sequences; 15,617,559 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077798.1| grpE protein homolog 1, mitochondrial precursor... 318 3e-87
Alignment gi|NP_067271.1| grpE protein homolog 2, mitochondrial precursor... 150 1e-36
>ref|NP_077798.1| grpE protein homolog 1, mitochondrial precursor [Mus musculus].
Length = 217
Score = 318 bits (816), Expect = 3e-87
Identities = 163/217 (75%), Positives = 173/217 (79%)
Frame = +3
Query: 39 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 218
MAA CVR+ CTATKQKNNGQNL+ED G E KTD PS +KT
Sbjct: 1 MAARCVRLARRSLPALALSFRPSPRLLCTATKQKNNGQNLDEDLGHCEPKTDPPSADKTL 60
Query: 219 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 398
MEKYKRALADTEN RQRSQKLVEEAKLYGIQGFCKDLLEVADILEK
Sbjct: 61 LEEKAKLEEQLRETMEKYKRALADTENLRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 120
Query: 399 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 578
ATQSVPKEEI ++NPHLK+LYEGL+MTE QIQKVFTKHGLLRLDP+GAKFDPYEHEALFH
Sbjct: 121 ATQSVPKEEISNNNPHLKSLYEGLVMTEVQIQKVFTKHGLLRLDPIGAKFDPYEHEALFH 180
Query: 579 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 689
TPVEGKEPGTVALV+KVGYKLHGRTLRPALVGVVK+A
Sbjct: 181 TPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVKDA 217
>ref|NP_067271.1| grpE protein homolog 2, mitochondrial precursor [Mus musculus].
Length = 224
Score = 150 bits (379), Expect = 1e-36
Identities = 75/143 (52%), Positives = 105/143 (73%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPK-EEIRDDNP 443
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK + + E D
Sbjct: 78 RYQRAVADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTAKCCSEGAEPEDHRR 137
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ +++GL + EA+++ VFTKHGL ++ P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 138 TLEKVFQGLSLLEARLKSVFTKHGLEKMTPIGDKYDPHEHELICHMPAGVGVQPGTVALV 197
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 198 RQDGYKLHGRTIRLAQVEVAVES 220
Database: RefSeq49_MP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 15,617,559
Number of sequences in database: 30,036
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 30036
Number of Hits to DB: 22,187,353
Number of extensions: 503157
Number of successful extensions: 1908
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1905
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 15,617,559
Length adjustment: 101
Effective length of query: 194
Effective length of database: 12,583,923
Effective search space: 2441281062
Effective search space used: 2441281062
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel49
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: RefSeq49_HP.fasta
32,964 sequences; 18,297,164 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079472.1| grpE protein homolog 1, mitochondrial precursor... 322 2e-88
Alignment gi|NP_689620.2| grpE protein homolog 2, mitochondrial precursor... 157 9e-39
>ref|NP_079472.1| grpE protein homolog 1, mitochondrial precursor [Homo sapiens].
Length = 217
Score = 322 bits (826), Expect = 2e-88
Identities = 163/217 (75%), Positives = 175/217 (80%)
Frame = +3
Query: 39 MAAPCVRVXXXXXXXXXXXXXXXXXXXCTATKQKNNGQNLEEDAGQNEQKTDLPSTEKTX 218
MAA CVR+ CTATKQKN+GQNLEED GQ+EQK D P+TEKT
Sbjct: 1 MAAQCVRLARRSLPALALSLRPSPRLLCTATKQKNSGQNLEEDMGQSEQKADPPATEKTL 60
Query: 219 XXXXXXXXXXXXXAMEKYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEK 398
+EKYKRALADTEN RQRSQKLVEEAKLYGIQ FCKDLLEVAD+LEK
Sbjct: 61 LEEKVKLEEQLKETVEKYKRALADTENLRQRSQKLVEEAKLYGIQAFCKDLLEVADVLEK 120
Query: 399 ATQSVPKEEIRDDNPHLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFH 578
ATQ VPKEEI+DDNPHLKNLYEGL+MTE QIQKVFTKHGLL+L+P+GAKFDPYEHEALFH
Sbjct: 121 ATQCVPKEEIKDDNPHLKNLYEGLVMTEVQIQKVFTKHGLLKLNPVGAKFDPYEHEALFH 180
Query: 579 TPVEGKEPGTVALVNKVGYKLHGRTLRPALVGVVKEA 689
TPVEGKEPGTVALV+KVGYKLHGRTLRPALVGVVKEA
Sbjct: 181 TPVEGKEPGTVALVSKVGYKLHGRTLRPALVGVVKEA 217
>ref|NP_689620.2| grpE protein homolog 2, mitochondrial precursor [Homo sapiens].
Length = 225
Score = 157 bits (398), Expect = 9e-39
Identities = 78/143 (54%), Positives = 107/143 (74%), Gaps = 2/143 (1%)
Frame = +3
Query: 267 KYKRALADTENFRQRSQKLVEEAKLYGIQGFCKDLLEVADILEKATQSVPKE-EIRDDNP 443
+Y+RA+AD EN R+R+Q+ VE+AK++GIQ FCKDL+EVADILEK T+ + +E E D
Sbjct: 79 RYQRAIADCENIRRRTQRCVEDAKIFGIQSFCKDLVEVADILEKTTECISEESEPEDQKL 138
Query: 444 HLKNLYEGLLMTEAQIQKVFTKHGLLRLDPLGAKFDPYEHEALFHTPV-EGKEPGTVALV 620
L+ ++ GLL+ EA+++ VF KHGL +L P+G K+DP+EHE + H P G +PGTVALV
Sbjct: 139 TLEKVFRGLLLLEAKLKSVFAKHGLEKLTPIGDKYDPHEHELICHVPAGVGVQPGTVALV 198
Query: 621 NKVGYKLHGRTLRPALVGVVKEA 689
+ GYKLHGRT+R A V V E+
Sbjct: 199 RQDGYKLHGRTIRLARVEVAVES 221
Database: RefSeq49_HP.fasta
Posted date: Oct 17, 2011 1:42 PM
Number of letters in database: 18,297,164
Number of sequences in database: 32,964
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 32964
Number of Hits to DB: 26,269,015
Number of extensions: 608023
Number of successful extensions: 2224
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2220
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 18,297,164
Length adjustment: 102
Effective length of query: 193
Effective length of database: 14,934,836
Effective search space: 2882423348
Effective search space used: 2882423348
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to Sscrofa10_2
BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20110601C-008792
(886 letters)
Database: Sscrofa_10.2.fasta
4582 sequences; 2,808,509,378 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Sscrofa_Chr08 1007 0.0
Sscrofa_Chr06 266 2e-68
>Sscrofa_Chr08
|| Length = 148491826
Score = 1007 bits (508), Expect = 0.0
Identities = 536/543 (98%), Gaps = 2/543 (0%)
Strand = Plus / Minus
Query: 345 ggcattcagggcttctgcaaggacctgctggaggtcgcagacatcttggagaaggcgaca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398367 ggcattcagggcttctgcaaggacctgctggaggtcgcagacatcttggagaaggcgaca 3398308
Query: 405 cagtctgtcccgaaggaagagatcagagacgacaacccccacctgaagaacctctacgag 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398307 cagtctgtcccgaaggaagagatcagagacgacaacccccacctgaagaacctctacgag 3398248
Query: 465 gggctcctgatgaccgaggcccagatccagaaggtgttcaccaagcacggcttgctccgc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398247 gggctcctgatgaccgaggcccagatccagaaggtgttcaccaagcacggcttgctccgc 3398188
Query: 525 ctggaccccctgggcgccaagttcgacccgtacgagcacgaggccttgttccacacgccg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398187 ctggaccccctgggcgccaagttcgacccgtacgagcacgaggccttgttccacacgccg 3398128
Query: 585 gtggagggcaaggagccgggcacggtggcgctggttaacaaagtgggctacaagctgcac 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398127 gtggagggcaaggagccgggcacggtggcgctggttaacaaagtgggctacaagctgcac 3398068
Query: 645 gggcgcaccctgaggcccgccctggtgggggtggtgaaggaggcctagccgccgccaggg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398067 gggcgcaccctgaggcccgccctggtgggggtggtgaaggaggcctagccgccgccaggg 3398008
Query: 705 ctgctggcgtttgcaggtgactctcagaaagccggttgtctttgctcctgccagtgcttt 764
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3398007 ctgctggcgtttgcaggtgactctcagaaggccggttgtctttgctcctgccagtgcttt 3397948
Query: 765 ggactttccctgacccccgttggaaggcttcnngtca-aacggcgccacagaacagcaag 823
| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 3397947 gacctttccctgacccccgttggaaggcttc-ggtcaccacggcgccacagaacagcaag 3397889
Query: 824 ccagttgcgcagtcgtgtcaacagactggagctggggagtcgttcgttgattttccatgc 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3397888 ccagttgcgcagtcgtgtcaacagactggagctggggagtcgttcgttgattttccatgc 3397829
Query: 884 ata 886
|||
Sbjct: 3397828 ata 3397826
Score = 329 bits (166), Expect = 2e-87
Identities = 166/166 (100%)
Strand = Plus / Minus
Query: 99 aggccctctccccggctgctgtgcacagccacaaaacagaagaacaacggccagaacttg 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410825 aggccctctccccggctgctgtgcacagccacaaaacagaagaacaacggccagaacttg 3410766
Query: 159 gaagaggacgcgggtcagaatgaacagaagacagatcttccctctacagagaagaccctc 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410765 gaagaggacgcgggtcagaatgaacagaagacagatcttccctctacagagaagaccctc 3410706
Query: 219 atggaggagaaggtcaagctggaagagcagctgaaggaggccatgg 264
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410705 atggaggagaaggtcaagctggaagagcagctgaaggaggccatgg 3410660
Score = 200 bits (101), Expect = 9e-49
Identities = 101/101 (100%)
Strand = Plus / Minus
Query: 1 tgcctgtggcgcgcgcagggctgacggcggcggcagtcatggcggctccgtgtgtgaggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413660 tgcctgtggcgcgcgcagggctgacggcggcggcagtcatggcggctccgtgtgtgaggg 3413601
Query: 61 tggcgcggcgcagcctctcggctttagcgttgtctctcagg 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 3413600 tggcgcggcgcagcctctcggctttagcgttgtctctcagg 3413560
Score = 167 bits (84), Expect = 1e-38
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 263 ggaaaaatacaagcgagcgttggcagatactgagaactttcggcagaggagccaaaaatt 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3409172 ggaaaaatacaagcgagcgttggcagatactgagaactttcggcagaggagccaaaaatt 3409113
Query: 323 ggtggaggaagctaaactctatgg 346
||||||||||||||||||||||||
Sbjct: 3409112 ggtggaggaagctaaactctatgg 3409089
>Sscrofa_Chr06
|| Length = 157765593
Score = 266 bits (134), Expect = 2e-68
Identities = 324/384 (84%), Gaps = 10/384 (2%)
Strand = Plus / Minus
Query: 129 acaaaacagaagaacaacggccagaacttggaagaggacgcgggtcagaatgaacagaag 188
|||||||| ||||||| |||||||||| ||| |||| |||||||||||||||||||
Sbjct: 98879462 acaaaacaaaagaacagtggccagaactcggacgagggtatgggtcagaatgaacagaag 98879403
Query: 189 acagatcttccctctacagagaagaccctcatggaggagaaggtcaagctggaagagcag 248
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct: 98879402 acagatcttccctctacagagaagacactcatggaggagaaggtcaaggtggaagagcag 98879343
Query: 249 ctgaaggaggccatggaaaaatacaagcgagcgttggcagatactgagaactttcggcag 308
|| | ||| ||| || |||||| |||| ||| |||||||||||||||||||| | ||||
Sbjct: 98879342 ctaagagagaccacgggaaaatataagcaagctttggcagatactgagaacttgcagcag 98879283
Query: 309 aggagccaaaaattggtggaggaagc--taaactctatggcattcagggcttctgcaagg 366
| |||||||||||||||||||| ||| ||||| || ||||||||||||||||| ||||
Sbjct: 98879282 aagagccaaaaattggtggaggtagcaaaaaactatagggcattcagggcttctg-aagg 98879224
Query: 367 acctgctggaggtcgcagacatcttggagaaggcgacacagtctgtcccgaaggaagaga 426
| ||||||| || | |||||||| ||| |||||||| ||| || ||||||||||
Sbjct: 98879223 atgtgctggaagttg----catcttgg---aggtgacacagtgtgttccaaaggaagaga 98879171
Query: 427 tcagagacgacaacccccacctgaagaacctctacgaggggctcctgatgaccgaggccc 486
| ||||| || |||||||||||||||||||| ||| | || | ||||||| | | ||
Sbjct: 98879170 ttagagatgataacccccacctgaagaacctttacaaaggaattgtgatgactggagtcc 98879111
Query: 487 agatccagaaggtgttcaccaagc 510
||||||||||||||||||| ||||
Sbjct: 98879110 agatccagaaggtgttcacaaagc 98879087
Database: Sscrofa_10.2.fasta
Posted date: Nov 16, 2011 10:34 AM
Number of letters in database: 2,808,509,378
Number of sequences in database: 4582
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4582
Number of Hits to DB: 22,860,902
Number of extensions: 128
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 7
Length of query: 886
Length of database: 2,808,509,378
Length adjustment: 21
Effective length of query: 865
Effective length of database: 2,808,413,156
Effective search space: 2429277379940
Effective search space used: 2429277379940
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 18 (36.2 bits)
S2: 29 (58.0 bits)